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![[Figure 2]](gm5124fig2mag.jpg)
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Figure 2
Violin plots comparing the distribution of undamaged (n = 2278) and damaged cysteines (n = 202) in the GAPDH dataset, depending on (top) RSZD, RSCC, number of peaks, minimum r.m.s.d. of local difference-density peaks and minimum distance of a difference-density peak to cysteine SG and (bottom) maximum distance of a difference-density peak to cysteine SG, Bnet-percentile (undamaged n = 2132, damaged n = 173), sigma level of the cysteine BDamage relative to the rest of the structure (undamaged n = 2249, damaged n = 202), temperature (undamaged n = 2231, damaged n = 195) and resolution. 3.0σ is marked (dashed line) for RSZD as the suggested threshold by Tickle (2012  ). Evidently, although some distributions are statistically significantly different [RSCC, σ(BDamage) and temperature], their distributions do not lend themselves to setting threshold levels for damage prediction. The Kolmogorov–Smirnov P-value for each comparison is reported for each plot (unless otherwise stated n = 2480, ns = no significant difference), Dashed and dotted lines within each violin represent the median and quartiles, respectively. This figure was prepared using GraphPad Prism (version 10.6.0), GraphPad Software, Boston, Massachusetts, USA; https://www.graphpad.com. |
![[Figure 2]](gm5124fig2.jpg)
 | STRUCTURAL BIOLOGY |
ISSN: 2059-7983
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