forthcoming articles
The following articles are a selection of those recently accepted for publication in Acta Crystallographica Section D: Structural Biology.
See also Forthcoming articles in all IUCr journals.
Structural basis for T-cell receptor recognition of p53Y220D, a human cancer neoantigen
We determined crystal structures of TCR 4414 A bound to HLA-A2â"presented p53Y220D and of the corresponding unbound wild-type and mutant p53â"HLA-A2 ligands, revealing that the Y220D driver mutation reshapes the peptide and renders a normally cryptic self-epitope visible to T cells. These structures explain how TCR 4414 A achieves high specificity for mutant p53 by minimizing interactions with conserved peptide regions and instead focusing on the central Y220D mutation, providing a structural basis for mutation-specific TCR immunotherapy.
Single-crystal X-ray and in crystallo XANES studies resolve cobalt coordination in cobalamin and rule out radiation-induced ligand loss in human intrinsic factor
Ultra-high-resolution crystallography combined with in-crystallo Co K-edge XANES shows that cobalamin retains octahedral cobalt coordination in both oxidized and reduced states. These results rule out radiation-induced Coâ"CN cleavage as the cause of the missing axial ligand in intrinsic factorâ"bound cobalamin.
Structure and allostery in major facilitator superfamily symport mechanisms
Conformational dynamics in the melibiose/Na+ cotransporter MelB significantly influence the binding of the primary sugar substrate but have minimal effect on the co-substrate Na+. Na+ acts as an allosteric activator, increasing sugar affinity by stabilizing the inner barrier and constraining conformational flexibility.
Towards routine accurate electron-density studies of biological macromolecules
Here we describe the determination of the highest resolution structure in the PDB at 0.43 Å resolution. Electron density maps reveal extensive deformation electron density that is completely accounted for by performing transferable aspherical atom refinements using the DiSCaMB library in BUSTER.
Avoiding pitfalls when modelling ligands in macromolecular crystallography
Flawed protein-ligand X-ray structures can misdirect drug discovery based on PDB-deposited models. This review uses publicly available PDB examples to highlight potential pitfalls—from absent ligands to incorrect chemistry—and presents a practical validation approach to improve model reliability.
Room-temperature crystal structure of a metal-dependent W-formate dehydrogenase by serial synchrotron crystallography
We report a room-temperature serial synchrotron X-ray (SSX) crystallography structure analysis of the Nitratidesulfovibrio vulgaris formate dehydrogenase AB (NvFdhAB), an enzyme that reduces CO2 to formate.
Replacement soaking for human tankyrase 2 enables studies on substrate analogues and inhibitors
Replacement soaking, also known as cross-soaking, is a compelling method for solving complex structures in cases where traditional soaking and co-crystallization approaches fail. This method is demonstrated with human tankyrase 2, and new crystal structures of complexes with nanomolar inhibitors and an analogue of the substrate NAD+ are reported.
Advances in the nanostructure characterization of biological hydrogels formed by the prion-like domain of EARLY FLOWERING 3
In biological systems, hydrogels often arise through liquid–liquid phase separation, where biomolecular condensates can age into gel-like states. SAXS is a key technique to probe the molecular organization of these samples. This study introduces an in-vacuum Gel-Cell for SAXS-based structural analysis of a biologically derived hydrogel formed by the thermosensory prion-like domain of EARLY FLOWERING 3 and presents a three-component model to interpret the obtained data.
Influence of heme and pH on the oligomeric states of Brucella melitensis bacterioferritin
The oligomerization of B. melitensis bacterioferritin (BmBfr) was studied using X-ray crystallography, size-exclusion chromatography and thermal shift analysis. These techniques allowed the characterization of both apo and holo BmBfr, highlighting the impact of heme and pH on the oligomerization mechanism.
An unattended image-processing pipeline for on-the-fly quality assessment and 3D exploration in cryo-EM
We present a fully automated, unattended cryo-EM pipeline that serves as an on-the-fly diagnostic tool, enabling rapid data-quality assessment and informed decision-making to maximize data-collection efficiency.
Dose-dependent structural and electron-density features in the lytic polysaccharide monooxygenase NcAA9D
A series of 36 structures of the Neurospora crassa LPMO NcAA9D were refined against X-ray crystal datasets collected with increasing dose from a single crystal to provide insights into dose-dependent structural changes at the active site of the enzyme. The findings underscore the importance of minimizing accumulated dose during cryo-X-ray crystallographic studies of lytic polysaccharide monooxygenases to prevent the misinterpretation of radiation damage-related electron-density features.
Crystal structure of pilus-specific sortase from Enterococcus faecalis reveals both open and closed conformations: insights into loop dynamics and substrate recognition
The open and closed lid conformational states of class C sortase, which catalyzes the polymerization of endocarditis and biofilm-associated pili in E. faecalis, were captured in a single crystal. Communication between the flexible lid and the dynamic active-site (β7–β8) loop, along with their synchronized motions, regulates access to the active site for primary- and secondary-substrate binding.

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