forthcoming articles

The following articles are a selection of those recently accepted for publication in IUCr journals.

Journal logoActa Crystallographica Section A
Acta Crystallographica
Section A
FOUNDATIONS AND ADVANCES
Journal logoActa Crystallographica Section B
Acta Crystallographica
Section B
STRUCTURAL SCIENCE, CRYSTAL ENGINEERING AND MATERIALS
Accepted 19 June 2024

Solvatomorphism in a series of copper(II) complexes with the 5-phenyl­imidazole/perchlorate system as ligands

The reactions of Cu(ClO4)2·6H2O and L′H in a variety of solvents have provided access to twelve solvatomorphs of the general formula [Cu(ClO4)2(LH)4]·xsolvent; the effect of the solvents on the packing of the complexes is critically discussed.

Accepted 13 June 2024

Orientational and crystallographic relationships in thin films of yttrium orthoferrite on sapphire substrates

An algorithm is proposed for determining the orientational relationships and crystal unit-cell parameters of thin films using a laboratory X-ray diffractometer and stereographic projections. It is illustrated by the treatment of experimental data obtained for the yttrium orthoferrite YFeO3 films on the single crystalline sapphire (Al2O3) substrates.

Accepted 6 June 2024

Following the guidelines for communicating commensurate magnetic structures: real case examples

Different examples are described on how to follow the Guidelines when reporting a commensurate magnetic structure.

Accepted 31 May 2024

A comparative study of the effect of high-pressure and low temperature on the crystal structure of lithium xanthinate hydrate

Anisotropic structural changes in crystalline lithium xanthinate hydrate on cooling to 100 K and under compression to 5.3 GPa are compared. A phase transition at ∼4 GPa was observed.

Accepted 29 May 2024

Supramolecular architectures in multicomponent crystals of imidazole-based drugs and tri­thio­cyanuric acid

The structures of three distinct forms (cocrystal, salt and a hybrid cocrystal of salt) of multicomponent crystals of imidazole-based drugs (metronidazole, ketoconazole and miconazole) with tri­thio­cyanuric acid as coformer are characterized. Their supramolecular architectures reflect the interplay between different molecular species.

Accepted 29 May 2024

New ion radii for oxides and oxysalts, fluorides, chlorides and nitrides


Accepted 27 March 2024

Assessment of the exchange-hole dipole moment dispersion correction for the energy ranking stage of the seventh crystal structure prediction blind test

Density-functional calculations using numerical atomic orbitals and the exchange-hole dipole moment dispersion model were applied to the energy ranking stage of the seventh crystal structure prediction blind test. This methodology gave successful predictions of the experimentally isolated polymorphs as being low in energy for three of the compounds considered, and for one additional compound upon inclusion of a vibrational free-energy correction.
Journal logoActa Crystallographica Section C
Acta Crystallographica
Section C
STRUCTURAL CHEMISTRY

Accepted 24 June 2024

3-[(Benzo-1,3-dioxol-5-yl)amino]-4-meth­oxy­cyclo­but-3-ene-1,2-dione: polymorphism and twinning of a precursor to an anti­mycobacterial squaramide

3-[(Benzo-1,3-dioxol-5-yl)amino]-4-meth­oxy­cyclo­but-3-ene-1,2-dione forms concomitant polymorphs, namely, block-shaped crystals of a monoclinic form I (space group P21/c, Z = 8, Z′ = 2) and needle-shaped crystals of a triclinic form II (space group P[\overline{1}], Z = 4, Z′ = 2), the latter of which exhibits twinning by pseudomerohedry.

Accepted 24 June 2024

Supra­molecular inter­actions in cocrystals of benzoic acid derivatives with selective COX-2 inhibitor etoricoxib

The structures of three 1:1 cocrystal forms of etoricoxib (ETR) with benzoic acid, 4-fluoro­benzoic acid and 4-nitro­benzoic acid were characterized by X-ray diffraction (single crystal and powder) and thermal differential scanning calorimetry–thermogravimetry techniques. Due to the influence of the different acids, ETR shows different conformations.

Accepted 24 June 2024

Crystal structure of the cytotoxic macrocyclic trichothecene Isororidin A

The absolute configuration of Isororidin A, isolated from the fungus Myrothesium verrucaria, has been determined by X-ray crystallography.

Accepted 21 June 2024

Synthesis, spectroscopic and crystallographic characterization of various cymantrenyl thio­ethers [Mn{C5HxBry(SMe)z}(PPh3)(CO)2]

Several manganese com­plexes of the type [MnCp(PPh3)(CO)2] containing a cyclo­penta­dienyl (Cp) ligand with one to five SMe substituents were prepared and studied by X-ray crystallography. In these structures, a few S⋯S and/or S⋯Br inter­actions occur, and these are sometimes of significant importance for the arrangement of the mol­ecules in the crystal.

Accepted 17 June 2024

Crystal structure and Hirshfeld surface analysis of two iHOFs based on CH⋯NC hydrogen bonding

One of the relatively weak inter­molecular inter­actions is the CH⋯NC hydrogen-bonding inter­action of multiple cyanide groups in pyridinium-functionalized building blocks. This provides an opportunity to design ionic hydrogen-bonded organic frameworks (iHOFs) triggered by template counter-ions with hierarchical self-assembly.

Accepted 31 May 2024

Using cocrystals as a tool to study non-crystallizing mol­ecules: crystal structure, Hirshfeld surface analysis and com­putational study of the 1:1 cocrystal of (E)-N-(3,4-di­fluoro­phen­yl)-1-(pyridin-4-yl)methanimine and acetic acid

Using a cocrystal of a mol­ecule that does not crystallize, we reveal that π–π inter­actions between aromatic rings are present with only two F atoms in the aromatic ring.
Journal logoActa Crystallographica Section D
Acta Crystallographica
Section D
STRUCTURAL BIOLOGY

Accepted 27 June 2024

Protonation of histidine rings using quantum-mechanical methods

Histidine protonation is fraught, but a new quantum-mechanical method can provide insight into choices.

Accepted 18 June 2024

The crystal structure of Shethna protein II (FeSII) from Azotobacter vinelandii suggests a domain swap

The A. vinelandii FeSII protein forms an oxygen-resistant complex with the nitrogenase MoFe and Fe proteins.

Accepted 13 June 2024

Managing macromolecular crystallographic data with a laboratory information management system

It is discussed how the metadata for the workflow from protein crystallization to the deposition of crystal structures can best be captured by using a dedicated but flexible laboratory information management system that can be either a standalone installation or a hosted service to mitigate the IT risks.

Accepted 11 June 2024

A snapshot love story: what serial crystallography has done and will do for us

This article gives an overview on current trends and challenges in serial crystallography, with a focus results from time-resolved experiments.
Journal logoActa Crystallographica Section E
Acta Crystallographica
Section E
CRYSTALLOGRAPHIC COMMUNICATIONS

Accepted 28 June 2024

Synthesis, structural studies and Hirshfeld surface analysis of 2-[(4-phenyl-1H-1,2,3-triazol-1-yl)methyl]pyridin-1-ium hexa­kis­(nitrato-κ2O,O′)thorate

The complex 2-[(4-phenyl-1H-1,2,3-triazol-1-yl)meth­yl]pyridin-1-ium hexa­kis­(nitrato-O,O′)thorate was synthesized from layered solutions of Th(NO3)4·5H2O and 2-[(4-phenyl-1H-1,2,3-triazol-1-yl)meth­yl]pyridine (L).

Accepted 14 June 2024

Rerefinement of the crystal structure of BiF5

Redetermination of the crystal structure of BiF5 to a much higher precision and quantum chemical calculations allowed for an assignment of the Raman and IR bands.

Accepted 28 May 2024

Crystal structure of Staudtienic acid, a diterpenoid from Staudtia kamerunensis Warb. (Myristicaceae)

This work presents the crystal structure of a natural diterpenoid, Staudtienic acid, isolated from the stem bark of Staudtia kamerunensis Warb (Myristicaceae). This work confirmed the results previously obtained from NOE spectroscopy.

Accepted 6 May 2024

Structural multiplicity in a multi-component solvated crystal of the anti­retroviral protease inhibitor Lopinavir

The multi-component solvated Lopinavir crystal was prepared using evaporative methods. The crystal structure is unusual in that although Lopinavir was crystallized in ethyl­ene glycol (ethane-1,2-diol) alone, the unit cell contains four different components, totalling 18 mol­ecules. The stoichiometric ratio of this crystal is eight lopinavir mol­ecules, two ethane-1,2-diol mol­ecules, one (E)-ethene-1,2-diol (C2H4O2) and seven water mol­ecules.
Journal logoActa Crystallographica Section F
Acta Crystallographica
Section F
STRUCTURAL BIOLOGY COMMUNICATIONS

Accepted 24 June 2024

Preparing research samples for safe arrival at Centers and Facilities: recipes for successful experiments

Shipping of biomacromolecules to synchrotrons, cryoEM and sample-preparation facilities is often overlooked and has the potential to erase months and years of hard work. Here, guidelines and procedures are provided to ensure that samples arrive intact and safely to their destination.

Accepted 21 June 2024

The impact of exchanging the light and heavy chains on the structures of bovine ultralong antibodies

Complementary-determining region 3 (CDR3) of the light chain interacts with the extended CDR3 of the paired heavy chain in bovine ultralong antibodies. Exchanging light chains between two different ultralong antibodies induced a small axial twist in the CDR3H β-ribbon stalk region; however, comparative crystallographic interface analysis indicates that the ultralong loops have flexibility and their positioning is affected by crystal packing.
Journal logoJournal of Applied Crystallography Journal of Applied
Crystallography

Accepted 19 June 2024

What has scripting ever done for us? The CSD Python application programming interface (API)

A paper that illustrates the use of the CSD Python API in the community and showcases some example cases.

Accepted 13 June 2024

Exploring the X-ray optical device with nanostructures for improved spatial resolution in laboratory X-ray diffraction imaging

X-ray optical device with fine nanostructures was fabricated using an electrochemical approach. This contributed to improvement of spatial resolution as an optical element for X-ray diffraction imaging.

Accepted 12 June 2024

Operando pair distribution function analysis of nanocrystalline functional materials: the case of TiO2-bronze nanocrystals in Li-ion battery electrodes

Demonstration of tools for operando pair distribution function analysis of nanocrystalline functional materials. The particular case being 3 nm TiO2-bronze nanocrystals as active electrode material in a Li-ion battery.

Accepted 7 June 2024

DFT2FEFFIT: a DFT-based structural toolkit to analyze EXAFS spectra

This paper presents DFT2FEFFIT, an open-source Python-based software that regresses theoretical EXAFS spectra calculated from DFT structure models against experimental EXAFS spectra. DFT2FEFFIT could be of use for researchers involved in various fields of solid-state chemistry, physics and mineralogy.

Accepted 6 June 2024

Magnetic contrast layers with functional SiO2 coatings for soft matter studies with polarized neutron reflectometry

Substrates with switchable magnetic contrast layers can significantly improve PNR investigation of soft matter objects.

Accepted 6 June 2024

Resonant neutron scattering lengths

Function and coefficients for computing resonant neutron scattering lengths for selected elements and isotopes are described.

Accepted 31 May 2024

Rapid detection of rare events from in situ X-ray diffraction data using machine learning

This paper demonstrates the `rare-event-indicator', a robust machine learning framework to detect the onset of plastic deformation in polycrystalline materials.

Accepted 29 May 2024

Determination of the degree of crystallinity of polyphenyl­ene sulfide (PPS) composited with crystalline and noncrystalline fillers by applying the direct derivation method

A procedure for determining the degree of crystallography of composite materials has been developed, and its application to partially crystallized PPS samples, composited with CaCO3 as a crystalline filler and e-glass as a non-crystalline filler, is demonstrated. The inverse application of the direct derivation method for quantitative phase analysis is used to separate the halo pattern intensity into the non-crystalline part of the polymer and the non-crystalline filler.

Accepted 28 May 2024

On the feasibility of time-resolved X-ray powder diffraction of macromolecules using laser-driven ultrafast X-ray sources

This article presents an investigation into the feasibility of X-ray powder diffraction of macromolecules with laser-driven X-ray sources, which may enable in-house sub-picosecond time-resolved structural studies of macromolecules.

Accepted 20 May 2024

Subgradient-projection-based stable phase-retrieval algorithm for X-ray ptychography

This paper proposes a superior phase-retrieval algorithm for X-ray ptychography with almost the same computational efficiency as the conventional methods. It exploits an optimization technique, subgradient projection, which has an interesting property that means it can be expected to avoid yielding poor images.

more ...
Journal logoJournal of Synchrotron Radiation Journal of
Synchrotron Radiation

Accepted 17 June 2024

Development of a high-performance and cost-effective in-vacuum undulator

A high-performance in-vacuum undulator has been developed in a cost-effective manner.


Accepted 5 June 2024

TEMPUS, a Timepix4-based system for the event-based detection of X-rays

A full description of the TEMPUS system for photon science is given in this paper. The detector takes advantage of the new Timepix4 readout chip and, in particular, implement the use of the time-stamping mode for high resolution timing applications.

Accepted 5 June 2024

Spectral area normalization of HERFD-XANES spectra

We show that normalization of XANES data to the spectral area is a viable normalization method with an error of a few percent as evaluated by comparing to calculated spectra and spectra normalized to the edge-jump.

Accepted 4 June 2024

BEATS: BEAmline for synchrotron X-ray microTomography at SESAME

The recently inaugurated beamline ID10-BEATS for hard X-ray full-field tomography at the SESAME synchrotron in Jordan is presented. The report illustrates the design, performance, and scientific applications of the beamline, which was developed within the European Horizon 2020 project BEAmline for Tomography at SESAME. The recently inaugurated beamline ID10-BEATS for hard X-ray full-field tomography at the SESAME synchrotron in Jordan is presented. The report illustrates the design, performance, and scientific applications of the beamline, which was developed within the European Horizon 2020 project BEAmline for Tomography at SESAME.

Accepted 3 June 2024

Hard X-ray imaging and tomography at the Biomedical Imaging and Therapy beamlines of Canadian Light Source

The current state of the Biomedical Imaging and Therapy beamlines of the Canadian Light Source is described and new capabilities are presented.

Accepted 30 May 2024

StreamSAXS: a Python-based workflow platform for processing streaming SAXS/WAXS data

StreamSAXS has been developed as a Python-based desktop application within the SAXS/WAXS analysis system. It features a plug-in framework and seamless integration into large-scale acquisition systems for full-lifecycle data management.

Accepted 29 May 2024

High angular sensitivity X-ray phase-contrast microtomography of soft-tissue through a two-directional beam-tracking synchrotron set-up


Accepted 26 May 2024

X-ray lens figure errors retrieved by deep learning from several beam intensity images

We demonstrate that a neural network trained with a few thousand simulations using random errors can predict accurately the lens error profile that accounts for all aberrations of a compound refractive lens in a synchrotron beamline.


more ...IUCrJ
Accepted 27 June 2024

Bridging Length Scales in Hard Materials with Ultra-Small Angle X-ray Scattering – A Critical Review

This review examines the use of ultra-small angle X-ray scattering (USAXS), a nondestructive technique for analyzing the multi-scale microstructures of hard materials such as ceramics, metals, and composites. It discusses USAXS's principles, benefits, and challenges, along with its potential to advance materials development and optimize manufacturing processes, while also considering future enhancements through multimodal characterization and machine learning.

Accepted 18 June 2024

Refinement of cryo-EM 3D maps with self-supervised denoising model: crefDenoiser


Accepted 14 June 2024

In some cases more complicated approaches to refinement of macromolecular structures are not necessary

The manuscript `Modeling a unit cell: crystallographic refinement procedure using the biomolecular MD simulation platform Amber' presents a novel protein structure refinement method claimed to offer improvements over traditional techniques like Refmac5 and Phenix. Our re-evaluation suggests that while the new method provides improvements, traditional methods achieve comparable results with less computational effort.

Accepted 14 June 2024

In situ serial crystallography facilitates 96-well plate for structural analysis at low symmetry

The determination of a challenging structure in the P1 space group, the lowest-symmetry possible, shows how our in situ serial crystallography approach expands the application of crystallization plates as a robust sample delivery method.

Accepted 11 June 2024

Capturing the blue-light activated state of the Phot-LOV1 domain from Chlamydomonas reinhardtii using time-resolved serial synchrotron crystallography

CrLOV1 crystalline sample was optimized for serial crystallography. Time-resolved serial synchrotron crystallography provides high-resolution insights into structural changes of CrLOV1 from Δt = 2.5 ms up to Δt = 95 ms post-photoactivation, resolving the geometry of the thio­ether adduct and alteration of the C-terminal region implicated in the signal transduction.

Accepted 11 June 2024

Fixed-target pump–probe SFX: eliminating the scourge of light contamination

Time-resolved serial femtosecond crystallography experiments can be performed with samples delivered on solid supports. Sample consumption is significantly reduced when compared with the popular crystal delivery via high-viscosity extrusion.

Accepted 10 June 2024

Structure of Aquifex aeolicus lumazine synthase by cryo-electron microscopy to 1.42 Å resolution

A near-atomic resolution map was obtained for lumazine synthase while benchmarking a new microscope. At this resolution, waters, ligands and hydrogens were visible. A detailed outline of the methods used is presented that can employed for any single-particle cryo-EM experiment.

Accepted 5 June 2024

Crystallographic phase identifier of a convolutional self-attention neural network (CPICANN) on powder diffraction patterns

The development of CPICANN, a novel convolutional self-attention neural network, represents a groundbreaking approach in materials informatics. By leveraging the convolutional self-attention mechanism, CPICANN automates and significantly enhances the efficiency of crystal phase identification from whole X-ray powder diffraction patterns, marking a substantial advancement over traditional time-consuming methods.

Accepted 5 June 2024

Many locks to one key: N-acetyl­neuraminic acid binding to proteins

In structural biology, the analogy of a key (ligand) fitting a lock (protein) is commonly used to describe the binding process. In this context, we illustrate the evolutionary development of diverse locks that exhibit specific binding to a shared key: Neu5Ac. The intricate specificity of the interaction between various locks and the common key (Neu5Ac) is explored in our review.

Accepted 30 May 2024

Bridging the microscopic divide: a comprehensive overview of micro-crystallization and in vivo crystallography

The 26th IUCr congress held in Melbourne brought discussions on micro-crystallization and in vivo crystallography within structural biology to the forefront, highlighting innovative approaches and collaborative efforts to advance macromolecular research.

more ...
Journal logoIUCrData
IUCrData

Accepted 27 June 2024

Poly[[μ3-2-(benzotriazol-1-yl)acetato-κ3O:O′:N3]chlorido­(ethanol-κO)cobalt(II)]

The reaction of 2-(benzotriazol-1-yl) acetic acid with CoCl2 at room temperature in ethanol generates the title three-dimensional cobalt-based coordination polymer.


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