forthcoming articles
The following articles are a selection of those recently accepted for publication in IUCr journals.
| Acta Crystallographica Section A Acta Crystallographica Section A FOUNDATIONS AND ADVANCES |
Determination of the one-electron reduced Wigner function for a molecular crystal
The first reconstruction of an experimental one-particle reduced Wigner function for electrons in molecular crystals is reported. It relies on an ensemble N-representable model jointly refined from the X-ray diffraction and Compton scattering data.
Predominantly pentagonal ice bilayers: energetics and self-assembly properties
The stability factors of ice bilayers with different arrangements and hydrogen atoms in hydrogen bonds are established. A topological condition for the assembly of bilayers from individual fragments is proposed. Methods for producing bilayers and the main challenges are described.
On the diffraction spectrum of two-dimensional random substitutions
We investigate the spectral properties of two distinct classes of two-dimensional random substitutions: a family of constant-shape block random substitutions and the random Fibonacci direct product variation, which is a nonconstant-shape but geometrically compatible random inflation rule.
| Acta Crystallographica Section B Acta Crystallographica Section B STRUCTURAL SCIENCE, CRYSTAL ENGINEERING AND MATERIALS |
Sheared structure Pb4Sr14Fe23O52 solved by three-dimensional electron diffraction combined with atomic scale STEM imaging
The crystal structure of Pb4Sr14Fe23O52, a phase synthesized in 2006 whose structure remained unsolved so far, has been fully determined by combining three-dimensional electron diffraction with atomic resolution STEM imaging. The study reveals a commensurately modulated sheared structure derived from the parent ferrite Sr4Fe6O13–δ.
| Acta Crystallographica Section C Acta Crystallographica Section C STRUCTURAL CHEMISTRY |
Neutron diffraction investigation of the crystal structure of ammonium molybdate tetrahydrate
The crystal structure of ammonium molybdate tetrahydrate was investigated using time-of-flight neutron diffraction. Three of the six ammonium ions exhibited hydrogen-site disorder in the asymmetric unit, which was correlated with the surrounding hydrogen-bonding network.
| Acta Crystallographica Section D Acta Crystallographica Section D STRUCTURAL BIOLOGY |
Beyond monofunctionality: structural perspectives on phenol oxidase side activity in a catalase
Structural and biochemical characterization of the extracellular fungal catalase ClCPO uncovers an unexpected phenol oxidase promiscuity. Crystal structures, substrate docking and electron-transfer pathway analysis identify ligand-binding regions and support a working mechanistic model for catalase-associated phenol oxidase activity.
Radiation damage in serial femtosecond crystallography studied in hemoglobin
Protein structures determined by serial femtosecond crystallography are indistinguishable when measured with 3 and 10 fs X-ray pulses, indicating no structural benefit from further shortening the pulse duration under the studied conditions.
| Acta Crystallographica Section E Acta Crystallographica Section E CRYSTALLOGRAPHIC COMMUNICATIONS |
Reaction products of lithium metal with N,N-dimethylacetamide and tetramethylurea
Reaction of lithium metal with dry N,N-dimethylacetamide and N,N-tetramethylurea produced crystals of the lithium N,N-dimethylacetoacetamidate and N,N-tetramethylurea produces crystals of the lithium bis-1,2-(N,N-dimethylamino)ethan-1-one-2-olate.
Synthesis, crystal structure and thermal properties of catena-poly[[[bis(μ-2,3-dimethylpyrazine-κN1)cadmium(II)]-di-μ-chlorido] monohydrate]
In the crystal structure of the title compound, the cadmium cations are linked by μ-1,1 bridging chloride anions into chains that are additionally connected by O—H⋯N hydrogen bonding via the water molecules of crystallization into layers.
Crystal structure and Hirshfeld analysis of di-μ-bromido-bis[(1-{[dimethyl(phenylthiomethyl)silyl]methyl}piperidine-κ2N,S)copper(I)] and di-μ-iodido-bis[(1-{[dimethyl(phenylthiomethyl)silyl]methyl}piperidine-κ2N,S)copper(I)]
The dinuclear S,N-chelate title complexes feature a halide-bridged rhomboid-shaped Cu(μ2-X)Cu (X = I, Br) core with Cu⋯Cu contacts of 2.8249 (5) and 2.7631 (6) Å, respectively. The two isostructural complexes crystallize in the triclinic space group P1 with half molecule in the asymmetric unit.
Crystal structure of a copper complex derivated to [or containing?] the 4-bromo-2-{[(2-hydroxyethyl)imino]methyl}phenol base Schiff ligand
The asymmetric unit contains two mononuclear units of the complex, each consisting of one deprotonated ligand, one thiocyanate anion (SCN−) coordinated through its nitrogen atom, one free water molecule, and one free 5-bromosalicylaldehyde molecule, forming a co-crystal. The copper atom is four-coordinate, adopting a slightly distorted square-planar geometry defined by the tridentate ligand and the nitrogen atom of the thiocyanate anion. The water molecule plays a key role in linking the two complex units through O–H⋯O hydrogen bonds. In the crystal, C—H⋯O and C—H⋯Br hydrogen bonds allow the free 5-bromosalicylaldehyde molecule to form a bridge between two adjacent layers.
Crystal structures of products from the BBr3-promoted demethylation of 3-(methoxymethyl)-6-phenyl-1,2,4,5-tetrazine
A (methoxymethyl)-substituted 1,2,4,5-tetrazine was treated with BBr3 to obtain both the (hydroxymethyl)- and (bromomethyl)-substituted 1,2,4,5-tetrazine; all three compounds were characterized by single-crystal X-ray diffraction measurements, which revealed the formation of intermolecular π–π stacks for all tetrazines, as well as hydrogen-bonded dimers of the tetrazine alcohol.
Molecular and crystal structure of (Z)-N-allyl-3-(allylimino)-3H-isoindol-1-amine
The title molecule is present in its 3-imino-3H-isoindol-1-amine tautomeric form. In the crystal, intermolecular N—H⋯N hydrogen bonds lead to the formation of infinite chains propagating parallel to [001].
Lamellar crystal structure of the trigonal mixed-metal phosphate RbCoFe(PO4)2
In the title compound, all the cations occupy tetrahedral sites, with the exception of rubidium, whose coordination number is twelve. The three types of tetrahedra are linked at their vertices to form double layers stacked along the c-axis direction. The planes occupied by the rubidium ions are sandwiched between these layers.
| Acta Crystallographica Section F Acta Crystallographica Section F STRUCTURAL BIOLOGY COMMUNICATIONS |
Recombinant versus native botulinum neurotoxin type A: structural and pharmacodynamic comparison
For the first time, the recombinant core BoNT/A expressed in Escherichia coli and nicked in vitro is shown to be structurally identical to native BoNT/A from Clostridium botulinum, enabling direct activity comparison between the recombinant product and the native toxin.
Crystal structure of the bifunctional enzyme phosphoribosyl isomerase A from Mycobacterium tuberculosis with bound light-controllable inhibitor
We have determined the crystal structure of an isomerase catalyzing two steps in histidine and tryptophan biosynthesis with a bound light-switchable competitive inhibitor. The work identifies explains the mode of action of the inhibitor and describes the discovery of an hitherto unknown third phosphate-binding site of the enzyme.
| Journal of Applied Crystallography Journal of Applied Crystallography |
Site-specific dispersion factors in Fe3O4 determined through a Kramers–Kronig-constrained approach to Rietveld refinement
We describe a means to enable site-specific X-ray absorption spectra from Rietveld refinement of powder diffraction across an absorption edge using a variational approach to ensure Kramers–Kronig consistency.
Quantitative three-dimensional reconstruction of periodic hole patterns via grazing-incidence small-angle X-ray scattering
This work demonstrates that higher-order Bragg diffraction peaks in grazing-incidence small-angle X-ray scattering provide enhanced sensitivity to lateral structural parameters. Exploiting this information enables accurate three-dimensional reconstruction of hole patterns from limited-angle data, reducing acquisition time requirements for laboratory-scale X-ray metrology.
Magnetic small-angle neutron scattering by a nanocrystalline ferromagnet with an anisotropic exchange interaction
A micromagnetic framework of magnetic small-angle neutron scattering (SANS) is developed, which incorporates weak symmetric anisotropic exchange and predicts new angular harmonics in magnetic SANS cross sections of polycrystalline ferromagnets.
Stroboscopic neutron scattering measurements using Raspberry Pi-based sample environment event mode
An inexpensive device based on a Raspberry Pi can give neutron scattering instruments the ability to carry out stroboscopic measurements in a relatively simple and flexible fashion. Stroboscopic measurements can be used to study fast kinetic processes in condensed matter systems.
PolymCrystRefine: a workflow for diffraction analysis of polymer crystals
An automated workflow, PolymCrystRefine, has been developed for polymer crystal structure refinement from fiber diffraction data, combining joint force-field and intensity-gradient optimization, a region-of-interest-based data exploitation scheme, and a genetic algorithm guided by fiber-specific constraints.
QuickProcess2: an integrated package for crystallography data visualization, processing and management at the GM/CA Structural Biology Facility
QuickProcess2 (QP2) unifies real-time image visualization, automated multi-pipeline data processing and experiment management into a single open-source platform for synchrotron macromolecular crystallography beamlines, enabling live quality assessment and concurrent data reduction for both standard rotation and serial crystallography experiments.
Iterative phase retrieval in macromolecular crystal diffraction using the gradients of intensities
Incorporating molecular intensity gradients into an iterative projection algorithm enables model-free electron-density reconstruction even for low-solvent macromolecular crystals.
Determination of partial atomic charges from single-crystal X-ray diffraction by refinement of occupancy of spherical atoms
Experimental measurement of partial atomic charge using standard crystallographic data is accessible to a wide range of experimental practitioners of single-crystal X-ray diffraction without the need for high-angle data or specialized software.
Development of advanced borosilicate glass coating for surface modification of neutron experimental tools
Sodium-free borosilicate glass thin films synthesized from diphenylborosiloxane exhibit enhanced hydrophobicity, offering a promising solution for durable surface modification of neutron experimental tools.
more ...
| Journal of Synchrotron Radiation Journal of Synchrotron Radiation |
DanMAX – a beamline for materials science using powder X-ray diffraction, total scattering, and full-field tomographic imaging Graphical abstract
The DanMAX beamline at the MAX IV laboratory is designed for in situ and in operando studies using powder X-ray diffraction, total scattering, and full-field imaging in the 15–35 keV energy range.
From Analytical to Data-Driven: Multi-Method Optimization of a Bendable Mirror System for Dynamic Focusing
A small-radius-of-curvature bendable mirror system is developed for dynamic focusing in X-ray free-electron laser and synchrotron radiation beamlines, and a transfer-learning neural-network and differential-evolution framework is used for force-to-shape modeling and inverse optimization. The method achieves nanometre-level surface-profile prediction and sub-newton end-force recovery, which provides an efficient route for rapid and repeatable tuning of active X-ray focusing mirrors.
Towards data-driven predictive maintenance for vacuum ion pumps at European XFEL
This paper presents a machine-learning-based approach for early fault detection in vacuum ion pumps at European XFEL by analyzing pressure data to detect fault precursors. The developed method enables predictive maintenance, reducing unplanned downtime and improving operational reliability.
High-resolution monochromator for the 8.41 keV 169Tm nuclear resonance
A high-resolution monochromator for the 8.41 keV 169Tm nuclear resonance is presented enabling nuclear resonant scattering on Tm compounds at PETRA III beamline P01. Hyperfine parameters and phonon densities of states of metallic Tm and Tm2O3 are studied.
Mirror alignment by particle swarm optimization for synchrotron radiation beamlines
A particle swarm optimization-based automated two-mirror alignment method was developed to restore high-flux beams in approximately 5 min, and its 15 month deployment demonstrated its robustness and reliability.
A femtosecond time-resolved Bragg coherent diffraction imaging experimental setup at PAL-XFEL for nanoscale lattice dynamics studies
The XSS beamline at PAL-XFEL provides a femtosecond time-resolved Bragg coherent X-ray diffraction imaging setup, optimized for tracking transient lattice dynamics and nanoscale strain fields within single crystals during dynamic processes.

CryoQSeg: robust particle segmentation for cryo-EM with Qwen-Image-Edit
CryoQSeg, a novel cryo-EM particle segmentation algorithm harnessing the state-of-the-art Qwen-Image-Edit visual large model fine-tuned on the CryoPPP dataset, demonstrates outstanding particle picking and segmentation performance for cryo-EM imaging data.
Quantification in wavelength-resolved neutron imaging: exemplified using polyethylene to mimic hydrogen in stainless steel
We have developed a comprehensive quantitative methodology for analysing wavelength-resolved neutron transmission spectra and demonstrate its application to metallic alloys. The approach integrates Monte Carlo simulations, which serve as a digital twin of the experiment, with NCrystal-based least-squares fitting. By using open-source software, this method resolves and quantifies trace element contributions, as demonstrated here for detecting hydrogen-equivalent concentrations below 10 wt p.p.m. in stainless steel.
The overlooked ZIF: reviving [Cu(imidazolato)2] from 1960's literature
This study investigates [Cu(im)2], a zeolitic imidazolate framework (ZIF) originally discovered in the 1960s but widely overlooked, by characterizing its B polymorph with a sodalite topology. By measuring its first gas adsorption isotherms, we demonstrate that the origins of modern ZIFs lie much earlier than previously recognized.
New frontiers in the structural analysis of nanomaterials: a deep-learning leap to bridge the gap in crystalline order
We address the challenge of solving ab initio crystal structures from X-ray powder diffraction (XRPD) data acquired from nanomaterials. Our approach employs artificial intelligence to pre-process XRPD profiles with the aim of recovering information lost by lack of crystalline order.
Variable resolution maps (VRMs) in CCTBX and Phenix: accounting for local resolution in cryoEM
New tools implemented in CCTBX and Phenix allow the calculation of variable resolution maps through a sum of finite-resolution atomic images expressed as analytic functions of all atomic parameters, along with their associated local resolution.
Lighting up materials with X-rays: advanced X-ray excited optical luminescence probe at the BM08-XAFS/XRF beamline, SESAME
An advanced X-ray excited optical luminescence experimental probe has been developed and commissioned at the BM08-XAFS/XRF beamline, SESAME. The setup is now available to users for measuring emission spectra and performing hyperspectral mapping of a wide range of optical materials over the 200–950 nm spectral range, under monochromatic X-ray beam and laser (UV–Vis/NIR) excitation.
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