forthcoming articles
The following articles are a selection of those recently accepted for publication in IUCr journals.
| Acta Crystallographica Section A Acta Crystallographica Section A FOUNDATIONS AND ADVANCES |
Adsorption of C60 on Al13Fe4(010): a theoretical study
Employing density functional theory calculations, we identify the complex adsorption energy landscape of C60 on Al13Fe4(010). We show that the most favorable adsorption sites are consistent with molecule–surface symmetry matching. We highlight the role of surface Al atoms in molecule–surface interactions.
| Acta Crystallographica Section B Acta Crystallographica Section B STRUCTURAL SCIENCE, CRYSTAL ENGINEERING AND MATERIALS |
Investigating the impact of molybdenum content on the room-temperature optical properties of Li2WO4 crystals grown by LTG Cz[low-thermal-gradient Czochralski technique]
Li2WO4 single crystals, both pure and molybdenum doped, were successfully grown, revealing that increasing Mo concentration, even as an inherent impurity, systematically alters their room-temperature optical and luminescence properties. This comprehensive characterization provides fundamental insights into how molybdenum influences luminescence mechanisms and crystal quality, which is vital for tailoring tungstate scintillators with desired performance.
Structural and magnetic investigations of the Weyl semimetal family CeAlSi1–xGex
A systematic investigation is reported of the structural and magnetic evolution in the CeAlSi1–xGex series, combining X-ray and neutron diffraction with magnetization measurements on polycrystalline samples and single crystals. Chemical substitution leads to a continuous lattice expansion and a suppression of the ferromagnetic ordering temperature without a structural phase transition, revealing a crossover towards antiferromagnetic behaviour and establishing CeAlSi1–xGex as a model system for compositionally tuned magnetism in noncentrosymmetric materials.
Maus's salts: an old family of iron sulfates with possible magnetic frustration
Structural investigations into Maus's salt derivatives reveal great sensitivity toward alkali metal and cocrystallized water content. Magnetic properties of the Maus's salt iron trimer are explored.
| Acta Crystallographica Section C Acta Crystallographica Section C STRUCTURAL CHEMISTRY |
Crystal structure and Hirshfeld surface analysis of the zero-dimensional hybrid perovskite 1,4-diazoniabicyclo[2.2.2]octane hexabromidostannate(IV)
The zero-dimensional (0D) perovskite 1,4-diazoniabicyclo[2.2.2]octane hexabromidostannate(IV) hemihydrate displays dominant H⋯Br/Br⋯H interactions, with smaller contributions from H⋯H, Br⋯Br and O⋯Br/Br⋯O contacts. These structural features underline the role of hydrogen bonding in stabilizing the 0D framework, highlighting its potential for light-emitting and photonic applications.
New dithiolene derivatives as coordination chromophores: structural, spectroscopic, electrochemical, Hirshfeld surface analyses, and in-vitro cytotoxicity
Seven substituted dithiolene compounds featuring diverse functional groups were synthesized through nucleophilic substitution, cyclocondensation, and transchalcogenation reactions. Structural characterization by single-crystal X-ray diffraction revealed distinct crystallographic systems and intermolecular interactions, further supported by Hirshfeld surface and 2D fingerprint plot analyses. Selected derivatives were evaluated for antiproliferative activity against the NCI-60 cancer cell line panel, exhibiting the lowest cell-growth percentages and negligible toxicity against normal cells.
| Acta Crystallographica Section D Acta Crystallographica Section D STRUCTURAL BIOLOGY |
A cryo-EM processing pipeline for microtubules using CryoSPARC
Cryo-EM reconstructions of microtubules are currently technically challenging and time consuming for average users. A cryo-EM processing pipeline for microtubules using CryoSPARC has been developed that overcomes many of these current issues.
Alphafuser: a parsimonious approach to predicting higher-order protein complexes
Alphafuser is a structure prediction pipeline that integrates experimental interaction data with AlphaFold-based modeling to systematically assemble multiprotein complexes in a computationally efficient manner. By implementing an ipTM-based pruning algorithm and validating against known structures and experimental assays, Alphafuser enables accurate identification of higher-order assemblies from large interactome datasets.
Cryo-EM reveals ArnA contamination during purification of a ciliary protein complex
ArnA contamination was independently observed during purification of a soluble, low-yield protein complex, leading to an unintended 3.23 Å cryo-EM structure. This work broadens recent findings and highlights ArnA as a recurrent His-tag-associated contaminant in E. coli purification workflows.
Mapping the effects of specific radiation damage and solvent radiolysis in buffers and crystals with online UV–Vis absorption spectroscopy
Radiation-induced changes during X-ray crystallographic data collection can compromise concurrent spectroscopic studies. Suitable protocols to detect and identify spectral artefacts from crystallization buffers and cryoprotectants are essential for reliable analysis of chromophoric ligands in macromolecules.
Radiation damage in sub-ångström resolution macromolecular crystallography: a low-dose study
This first systematic radiation-damage study at 0.55 Å resolution reveals extensive small conformational changes in response to dose. The findings demonstrate the benefits of using large crystals fully bathed in a large `top-hat' beam with a uniform fluence profile, together with low-dose data-collection protocols, for sub-ångström structure investigations on macromolecules.
A short story of the long road to cryo-EM in Portugal
This letter describes the development of cryo-EM in Portugal, highlighting a strategy based on research training and the establishment of a national facility with regional support nodes. Our experience demonstrates how access to European research infrastructures can enable the creation of sustainable national platforms without the investment in high-end microscopes.
Optimal 1TEL–target protein linker character is target protein-dependent
In this study, we examine the effect of short to medium-length flexible, semi-flexible and rigid linkers on the crystallization of a DARPin or the TNK1 UBA domain fused to the 1TEL protein crystallization chaperone, demonstrating that while rigid linkers can impair crystallization and reduce diffraction quality, the ideal linker character remains target protein-dependent.
more ...
| Acta Crystallographica Section E Acta Crystallographica Section E CRYSTALLOGRAPHIC COMMUNICATIONS |
Two (methylsulfanyl)benzyl-derivatized palladium–N-heterocyclic carbene complexes – same formula type but not isotypic
The two palladium–N-heterocyclic carbene (Pd–NHC) title complexes have the same formula type but crystallize in different space-group types, viz. the PdCl2 complex in P1 with Z = 4 and two molecules in the asymmetric unit, and the PdBr2 complex in C2/c with Z = 8 and one molecule in the asymmetric unit.
Synthesis, crystal structure and thermal properties of diaquabis(4-cyanopyridine)dithiocyanatonickel(II)
In the crystal structure of the title compound, the nickel cations are octahedrally coordinated by two terminal N-bonding thiocyanate anions, two 4-cyanopyridine ligands and two water molecules into discrete complexes that are linked by O—H⋯S hydrogen bonds into layers. These layers are further connected into a three-dimensional network by weak C—H⋯N interactions.
Synthesis and crystal structure of 1-{N′-[(4-chlorobenzene)sulfonyl]carbamimidoyl}-3-phenylthiourea dimethyl sulfoxide monosolvate
There are two formula units of the title compound, C14H13ClN4O2S2·C2H6OS, in the asymmetric unit. Both main molecules are closely similar except for minor differences in the orientations of the aromatic rings. The bond angles at the nitrogen atoms of the SC—NH—Cguanidine moiety are ca 130°. There are several intra- and intermolecular hydrogen bonds; the latter link the residues to form a ribbon parallel to the b axis.
Insights into [(2-phenoxyphenyl)lithium(THF)(TMEDA)] and diphenyl ether: structural influence of metalation on the aromatic system
The title compound, (2-phenoxyphenyl-κC1)(tetrahydrofuran-κO)(N,N,N′,N′-tetramethylethylenediamine-κ2N,N′)lithium, [Li(C12H9O)(C6H16N2)(C4H8O)] or [(2-phenoxyphenyl)lithium(THF)(TMEDA)] is a monomeric lithium complex in which tetrahydrofuran (THF) and N,N,N′,N′-tetramethylethylenediamine (TMEDA) play essential roles in stabilizing the lithium ion and promoting a monomeric aggregate. For comparison, diphenyl ether was also redetermined at 100 K.
Synthesis and crystal structure of bis[(1E,6E)-1,7-bis(4-acetyloxy-3-methoxyphenyl)hepta-1,6-diene-3,5-dionato(1−)-κ2O,O′](methanol)dioxidouranium(VI) toluene monosolvate
The first uranium–curcuminoid complex, [U(C25H23O8)2O2(CH3OH)]·C6H5CH3, features a uranyl(VI) center coordinated by two monoanionic bidentate 4,4′-diacetylcurcuminato ligands and one methanol molecule. The uranium atom adopts a distorted pentagonal–bipyramidal coordination geometry, with four O atoms from the β-diketonate moieties and one O atom from the methanol ligand defining the equatorial plane, while the two uranyl O atoms occupy the axial positions.
| Acta Crystallographica Section F Acta Crystallographica Section F STRUCTURAL BIOLOGY COMMUNICATIONS |
A first structural model for covalent dimerization of S100 proteins
The first molecular description of a disulfide-crosslinked S100 homodimer is revealed by the crystallographic structure of a S100A6 variant bound to the receptor for advanced glycation end-products (RAGE). Sequence conservation analyses and computational modeling suggest this covalent architecture may be adopted by other S100 proteins, thus representing a conserved mode of covalent dimerization within the S100 family.
Crystal structures of Escherichia coli glucokinase acetylation-mimicking variants and insights into the impact of acetylation
This work reports the crystal structures of E, coli glucokinase K214Q and K216Q variants, demonstrating a potential role of lysine acetylation in regulating glucokinase activity.
Crystal structure and functional characterization of an Asp49 phospholipase A2 from the bushmaster (Lachesis muta)
The crystal structure of an Asp49 phospholipase A2 from L. muta is reported, revealing a tetrameric assembly, catalytic conservation and a polarized electrostatic surface potentially linked to membrane targeting.
| Journal of Applied Crystallography Journal of Applied Crystallography |
CryoEM–microcrystal electron diffraction structural elucidation of cefadroxil: nanocrystallographic and neurotherapeutic insights into a β-lactam antibiotic
The first cryo-enabled microcrystal electron diffraction (MicroED) structure of the β-lactam antibiotic cefadroxil is reported, resolving its relative stereochemistry and confirming its known absolute configuration, hydrogen-bonding network and crystal packing at atomic resolution in the orthorhombic P212121 space group. This work establishes cryo-MicroED as a nanocrystallographic approach for high-fidelity structural characterization of pharmaceutical small molecules inaccessible to conventional X-ray crystallography.
Current Status of Multilayer Neutron Interferometer at J-PARC
A first measurement of the neutron scattering lengths of
and
using a multilayer-type neutron interferometer at J-PARC are reported, demonstrating the initial feasibility of the method with prospects for improved precision.
mcstas_gisans: combining ray tracing with distorted-wave Born approximation: McStas and BornAgain for virtual GISANS experiments
mcstas_gisans is a Python package that enables simulation of grazing-incidence small-angle neutron scattering experiments by integrating McStas and BornAgain into a single workflow.
Integrating simultaneous interfacial shear rheology with neutron reflectometry for structural and dynamic analysis of fluid interfacial systems
We present a new setup at the FIGARO horizontal neutron reflectometer enabling simultaneous measurement of the structural and mechanical properties of liquid interfaces, combining neutron reflectometry with interfacial shear rheology.
Computation and sensitivity analysis of the deformation gradient tensor reconstruction in dark-field X-ray microscopy
A computational method is developed for the explicit reconstruction of the full deformation gradient tensor from the measurement of three symmetry-equivalent reflections in dark-field X-ray microscopy. The computations are extended to develop the sensitivity and uncertainty analysis methodologies to give a quantitative understanding of the reconstruction.
Dynamic flat-field correction for high-quality PDF data
This study demonstrates that static flat-field calibration is insufficient for high-energy X-ray scattering measurements of dilute samples due to pixel-level instabilities in CdTe detectors. By introducing a dynamic flat-field correction using periodic water reference measurements, the method improves pair distribution function data quality by nearly 50%, enabling more precise characterization of weakly scattering systems.
| Journal of Synchrotron Radiation Journal of Synchrotron Radiation |
On the optimization of the geometric pattern for structured illumination based X-ray phase contrast and dark field imaging: a simulation study and its experimental validation
Single mask Phase Contrast and Dark-field imaging methods offer the great advantage of being simple to implement, translating most of the complexity to the numerical side. In this work, we study the impact of the modulation topology on the image quality retrieved both on numerical simulation and experiments.
F K-edge XAS as a tool to examine F environments in complex inorganic systems
Experimental and computational F K-edge X-ray absorption spectra of a range of complex inorganic materials are presented and analysed, with discussion as to what information on F speciation and environment can be obtained from the spectra. Observations and recommendations are made that will assist future research in the collection and analysis of high-quality F K-edge spectra.
Development of electron source feedback for enhanced X-ray beam stability at NSLS-II
An electron-source feedback method has been demonstrated at the NSLS-II Hard X-ray Nanoprobe, using X-ray beam position data to drive electron beam corrections. The approach suppresses dominant vibration peaks and significantly improves X-ray beam stability and ptychographic image quality.
A robotic goniometer exchanger for high-throughput single-crystal X-ray diffraction at SPring-8
A compact six-axis robotic arm has been implemented at the BL02B1 beamline of SPring-8 as a high-precision goniometer for single-crystal diffraction. Its programmable control enables automated sample handling and centring, advancing autonomous high-throughput diffraction in preparation for SPring-8-II.
Imaging gas in a combustion engine with high-energy X-ray Compton scattering
Compton-scattering imaging has been applied to a combustion engine under operation for the first time. With a time-resolved technique, a crank-angle dependency of Compton-scattered X-ray intensity is obtained at different positions in a combustion chamber.
Simultaneous measurements of HERFD-XANES, RXES and RIXS of caesium using a transition-edge sensor
A transition-edge sensor (TES) enables simultaneous measurements of HERFD-XANES, RXES and RIXS with a high-energy resolution. This study employed a TES to investigate caesium compounds at the Cs LII-edge (5359 eV).
more ...

Structural insights into MltB from Acinetobacter baumannii: a conserved catalytic tunnel with unique domain arrangement
We characterized MltB from the human pathogen Acinetobacter baumannii and unveiled its high-resolution crystal structure, revealing that abMltB features three domains forming a tunnel-like catalytic cavity. Structural comparison with related enzymes reveals conserved catalytic residues and a unique C-terminal domain orientation. Based on the current structural and biochemical studies, we modeled the working mechanism of abMltB.
3D atomic structure determination with ultrashort-pulse MeV electron diffraction
Using ultrashort-pulse MeV electron diffraction at the REGAE accelerator with increased penetration depth of the electrons significantly expands the applicable thickness range of samples, overcoming restrictions associated with traditional electron diffraction. We report the successful implementation of MeV electron diffraction for ab initio 3D structure determination of the quasi-2D material muscovite and the quantum material 1T-TaS2 at atomic resolution and open up new opportunities for in situ and time-resolved experiments.
Evaluating the Volta phase plate for improved tomogram alignment in cryo-electron tomography
We use sub-2 Å single-particle analysis and analytical contrast transfer function modeling to show that the Volta phase plate (VPP) boosts low-frequency signal relevant for cryo-electron tomography (cryo-ET) tilt-series alignment, improving contrast and alignment robustness in thick, crowded samples. Despite reduced subtomogram averaging resolution, these results establish the VPP's value for cryo-ET in thick, dense specimens, where tilt-series alignment is challenging and moderate-resolution information can still provide valuable biological insights.
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