forthcoming articles
The following articles are a selection of those recently accepted for publication in IUCr journals.
| Acta Crystallographica Section A Acta Crystallographica Section A FOUNDATIONS AND ADVANCES |
Quasicrystals from the edge: extreme environments, impact craters and the quest in other celestial bodies
Natural quasicrystals from the Khatyrka meteorite reveal that hypervelocity impacts can generate and preserve quasiperiodic phases under extreme non-equilibrium conditions. Their occurrence highlights [the role of] quasicrystals as robust markers of shock processes, offering new insights into the collisional and chemical evolution of planetary bodies.
| Acta Crystallographica Section B Acta Crystallographica Section B STRUCTURAL SCIENCE, CRYSTAL ENGINEERING AND MATERIALS |
The Ammann-Kramer-Neri tiling model of P-ZnMgEr Bergman-type quasicrystal based on in-house X-ray diffraction
Here, we present a structural solution of the primitive icosahedral ZnMgEr quasicrystal representing Bergman-type family. The structure model is based on the atomic decoration of the Ammann-Kramer-Neri tiling.
CRYSP: construction and visualization of crystal shapes in natural habits and on planar substrates
CRYSP is a software tool for the construction and visualization of crystal shapes in both natural habits and on planar substrates. It also supports morphologies associated with non-crystallographic point groups.
Growth of sea-urchin-like platinum nanoparticles and their applications
The tunable synthesis of sea-urchin-like platinum nanoparticles via fluoride-assisted galvanic replacement is demonstrated, revealing how nanospike morphology directly influences crystallinity, surface wettability, and surface-enhanced Raman scattering (SERS) performance. By tuning the reaction time, the morphology of Pt nanoparticles can be controlled to enhance SERS and optical performance, thereby, advancing plasmonic sensing and antireflective surfaces.
Elastic and piezoelectric properties of (R)-3-quinuclinidol under pressure: a quantum crystallography study
Electron density distribution in the intermolecular space of (R)-3-quinuclidinol under external pressure is studied in relation to the deformation of hydrogen bonds, hydrostatic compressibility, macroscopic elastic and piezoelectric properties.
Spatial distribution of 6s2 lone electron pair in Pb4Na(PO4)3 and stereochemical activity of the 6s2 electron cloud in lead-bearing apatites
In lacunary apatite structure-type Pb4Na(PO4)3, residual density attributable to the deformed 6s2 electron cloud is found in the vicinity of A2-site Pb2+ on equilateral triangle A2 normal to c. Systematic comparison on the size of the A2 triangle with other apatite-type compounds indicates limited stereochemical activity of the orbital.
Phase formation of LiB3O5 and other lithium borates in the multicomponent system NaF–B2O3–Li2O–MoO3
The phase equilibria in the LiB3O5–NaF–Li2Mo4O13 and LiB3O5–NaF–Li4Mo5O17 systems were studied. The presence of NaF results in an increase in the viscosity of borate systems that contain LiB3O5. The weight yield percentage of LBO[LiB3O5] can reach up to 60%.
| Acta Crystallographica Section C Acta Crystallographica Section C STRUCTURAL CHEMISTRY |
Comprehensive structural analysis of bromine-substituted ferrocenyl chalcones
Three novel crystal structures for bromine-substituted ferrocenyl chalcones are reported, as well as an in-depth structural study that includes five structures within the series of compounds. The effect of bromine substitution on the aromatic ring and enone connectivity of the ferrocenyl chalcones was evaluated over crystal structure and supramolecular features. A Hirshfeld surface analysis is also developed.
| Acta Crystallographica Section D Acta Crystallographica Section D STRUCTURAL BIOLOGY |
Quantifying distributions of cryo-EM projections
We propose a numerical measure to quantify the deviation of a distribution of cryo-EM 2D views from the uniform distribution. This approach allows the traditional two-dimensional projection diagrams to be complemented with quantitative characteristics and simple, easily generated curves that are straightforward to analyze.
Probing the statistics of sequence-dependent DNA conformations in solution using SAXS
This paper demonstrates how SAXS data on different dsDNA oligonucleotides can be analysed using a polymer model to determine the statistical properties of the local conformations in solution. Orienting the conformations produced by the model with respect to the sequence allows the precise determination of sequence-dependent structural effects.
| Acta Crystallographica Section E Acta Crystallographica Section E CRYSTALLOGRAPHIC COMMUNICATIONS |
Hexakis[dimethyltin(IV) difluoride] potassium iodide, 6Me2SnF2·KI: linear rods of potassium iodide penetrating the pores in planar layers of dimethyltin(IV) difluoride
In the solid state, hexakis[dimethyltin(IV) difluoride] potassium iodide, (Me2SnF2)6·KI, consists of planar layers of corner-linked {Me2SnF4/2} octahedra in a snub hexagonal tiling (sr{3,6}) arrangement, which leads to the formation of hexagonal pores in which potassium cations are located. The latter are linearly connected to iodide anions perpendicular to the layers.
Synthesis and crystal structure of ethyl 2-(1,3-benzothiazol-2-yl)-1-oxo-1H-pyrido[2,1-b][1,3]benzothiazole-4-carboxylate
Two short intramolecular S⋯O=C contacts and one intramolecular ‘weak' C—H⋯O=C hydrogen bond cause most of the molecule to be approximately planar. The main secondary interactions are a ‘weak' hydrogen bond, stacked pairs of molecules and a C—H⋯π contact.
Synthesis and structure of {methyl (Z)-2-[4-(dimethylamino)benzylidene]hydrazine-1-carbodithioate-κ2N2,S}bis(triphenylphosphine-κP)copper(I) nitrate carbon tetrachloride monosolvate
In the title compound, the carbon tetrachloride solvent molecule is presumed to have originated as an impurity in the chloroform solvent used. In the extended structure, the cation and anion are linked by an N—H⋯O hydrogen bond. Along with electrostatic forces, C—H⋯N, C—H⋯S and C—H⋯O hydrogen bonds help to consolidate the crystal packing.
ZnPCl7: a compositionally and structurally unprecedented metal–phosphorus halide
The reaction of ZnCl2 with PCl5 in a 1:1 molar ratio at 623 K produced single crystals of ZnPCl7, which crystallizes in the orthorhombic space group Ama2. Its extended structure features isolated [PCl4]+ tetrahedra and one-dimensional chains of corner-sharing ZnCl2Cl2/2 tetrahedra.
Syntheses, crystal structures and Hirshfeld surface analyses of (E)-1-[2,2-dichloro-1-(2,3-dimethoxyphenyl)ethen-1-yl]-2-phenyldiazene and (E)-1-(4-chlorophenyl)-2-[2,2-dichloro-1-(2,3-dimethoxyphenyl)ethen-1-yl]diazene
The crystal structures and Hirshfeld surface analyses of two similar azo compounds are reported. In the first, the molecules form layers parallel to the (010) plane through C—H⋯π and C—Cl⋯π interactions and van der Waals interactions between these layers consolidate the packing. In the other, the molecules are connected by C—H⋯O and C—H⋯Cl hydrogen bonds, forming a three-dimensional network. C—Cl⋯π interactions also contribute to the packing.
Crystal structure and Hirshfeld surface analyses, interaction energy calculations and energy frameworks of 2-(anthracen-10-yl)-1H-benzo[d]imidazole
The benzimidazole and anthracene moieties in the title compound contains are oriented at a dihedral angle of 46.00 (2)°. In the crystal, N—H⋯N hydrogen bonds link the molecules into infinite chains along the b-axis direction. In addition, C—H⋯π interactions contribute to the consolidation of the packing.
Synthesis and structure of 2-amino-4-nitro-1H-imidazol-3-ium chloride
Single crystals of 2-amino-4-nitroimidazole hydrochloride were synthesized by slow evaporation and characterized by X-ray diffraction. The crystal structure features a planar imidazolium cation and a chloride anion, forming a three-dimensional supramolecular network via N—H⋯Cl and N—H⋯O hydrogen bonds.
| Acta Crystallographica Section F Acta Crystallographica Section F STRUCTURAL BIOLOGY COMMUNICATIONS |
Sample purification and characterization of the α- and β-crustacyanin pigments from the American lobster for crystallographic and cryo-EM studies
The striking blue colour of the American lobster is caused by proteins that interact with the red pigment astaxanthin, causing its colour change. We have purified and characterized the pigments from the American lobster for crystallographic and cryo-EM studies.
A new crystal form of the DNA-free full-length XPD helicase from Thermoplasma acidophilum
We present a 2.13 Å resolution structure of DNA-free XPD from T. acidophilum in a novel orthorhombic lattice obtained under high ionic strength conditions. Compared with prior hexagonal forms, this structure features fewer crystal contacts and uniquely resolves loop 510–514. Interestingly, Tyr425 adopts an inward-facing conformation that would clash with DNA, suggesting a possible autoinhibitory role. These findings highlight how crystallization conditions influence lattice stability and reveal functionally relevant conformations.
| Journal of Applied Crystallography Journal of Applied Crystallography |
Software for SANS contrast variation experiment planning and data analysis
The development of a new contrast software suite for small-angle neutron scattering (SANS) contrast variation (CV) experiments is reported. This new platform, integrated into the SASSIE-web framework, streamlines experiment planning, simulation, and data analysis to improve the accessibility and efficiency of SANS CV studies for multi-component biological complexes.
Thermodynamic and crystal-chemical conditions for the formation of rotationally ordered phases in rare earth perovskites
On the basis of phenomenological theory, taking into account the crystal chemical properties of the compounds, the factors determining the formation of rotationally ordered phases in a large group of rare earth perovskites have been identified. It has been shown that the tendency to bend cation–anion bonds generates two types of rotational ordering, the specificity of the interaction of which determines the structure and arrangement of the ordered phases.
Non-reciprocal magnons beyond the skyrmion-paramagnetic phase transition in MnSi
Inelastic neutron scattering shows that the non-reciprocal nature of the magnons in the skyrmion phase of MnSi is maintained for high temperatures well beyond the skyrmion-paramagnetic phase transition.
A user-friendly goniometer-compatible fixed-target platform for macromolecular crystallography at synchrotrons
A user-friendly fixed-target platform for serial synchrotron crystallography is described that allows low-background X-ray diffraction data collection, in situ crystallization and transportation of protein microcrystals at room temperature.
Total-reflection Kirkpatrick–Baez nanofocusing mirror system and its preliminary imaging and ptychography experiments
A total-reflection Kirkpatrick–Baez nanofocusing mirror system at the Shanghai Synchrotron Radiation Facility achieves a two-dimensional spot of about 50 nm, with preliminary imaging and ptychography experiments demonstrating sub-50 nm resolution. This advancement enhances high-resolution experimental applications in materials science and nanotechnology.
Describing neutron spin echo data from undulating lipid vesicles: recent advances
We present results and practical considerations for the analysis of neutron spin echo data from vesicles with undulating membranes using a framework that was recently published [Granek et al. (2024). Eur. Phys. J. E 47, 12]. We show the importance of vesicle diffusion, size, lamellarity and osmotic pressure as well as the effects of membrane viscosity on the quantitative value for the bending rigidity.
Quantum refinement with electron diffraction and X-ray free-electron laser data: comparative study of ribonucleotide reductase dimetal site
For the first time quantum refinement has been performed with X-ray free-electron laser and microcrystal electron diffraction data for the dinuclear iron site in the R2a protein of ribonuclease reductase. The method is shown to work well and can be used to determine the protonation state of the bridging solvent molecule and deduce photoreduction in two of the structures.
Guanosine hydrogel as a new injection matrix for protein serial X-ray crystallography
A new carrier matrix for the high-viscosity injection of protein microcrystals during serial crystallography experiments is presented and characterized. Its suitability is validated by crystallographic data collection at the SACLA XFEL and further characterization at the ESRF synchrotron.
more ...
| Journal of Synchrotron Radiation Journal of Synchrotron Radiation |
Machine learning assisted masking of parasitic signals in Bragg coherent diffraction imaging
Bragg coherent diffraction imaging measurement sometimes require manual and time-consuming cleaning of parasitic signals like "aliens" from nearby particles that can affect the phase retrieval reconstruction. Here, we propose using clustering technique to speed up this process while keeping the resolution of the reconstructed object high. A user-friendly python Jupyter notebook code is available on Github.
Demonstration of a family of X-ray dark-field retrieval approaches on a common set of samples
Two samples are imaged using four X-ray dark-field imaging setups: propagation-based, single-grid, and single- and multiple-exposure speckle-based imaging. Dark-field retrieval algorithms have recently been developed by the authors to analyse data acquired on each of these setups, and these algorithms are applied to the corresponding datasets. These algorithms vary in both the number of required input images and their computational strategies, operating either globally on entire images or locally within sub-image-sized analysis windows. Despite these differences, all the approaches belong to the family of dark-field retrieval techniques that directly resolve local blurring or visibility changes in the measured images to recover the dark-field signal. This family of techniques is particularly suitable for high-resolution X-ray imaging, where the pixel size is already comparable with the characteristic width of this dark-field blurring. The strengths and limitations of each imaging setup and retrieval method are discussed, but most importantly, the paper demonstrates agreement across the techniques in terms of the extracted dark-field signal, all consistently isolating areas of small-angle scattering from unresolved microstructures. Finally, we discuss the complementarity of the presented techniques, and in which applications each technique can provide the most advantage.
Defocused illumination with beam-shaping condenser for uniform wide-field X-ray imaging
A defocused illumination method based on a beam-shaping condenser to suppress fringe artifacts arising from rectangular aperture diffraction and sub-grating interference is developed, providing an effective and practical approach for achieving wide-field and uniform illumination in X-ray microscopy.
Experimental control system of the X-ray magnetic circular dichroism endstation at Hefei Light Source-II
An Experimental Control System leveraging Bluesky and EPICS has been developed for the X-ray Magnetic Circular Dichroism endstation at Hefei Light Source-II. The design of a simulation debugging environment and the performance of three distinct scan modes have also been discussed.
Errors in reconstruction of dichroic X-ray orientation tomography due to polarization rotation of the incident beam
Linear dichroic X-ray tomography is a technique in which the linear dichroism of anisotropic materials is used to image crystal orientation in three dimensions. We show that the reconstruction of tomograms is subject to errors due to the change in polarization on propagation through the material and propose strategies for mitigating these effects.
Time-resolved 3D imaging opportunities with XMPI at ForMAX
The first implementation of X-ray multi-projection imaging (XMPI) at the ForMAX beamline (MAX IV) enables the acquisition of multiple projections simultaneously without requiring sample rotation. This approach facilitates volumetric studies of fast dynamics at frame rates of 12.5 kHz with micrometre resolution, with the potential of even higher speeds, surpassing the limitations of state-of-the-art methods like time-resolved tomography.
Simultaneous lasing of Ni Kα and Cu Kα lasers from an alloy foil irradiated with an intense X-ray free-electron laser pulse
We successfully achieved simultaneous lasing of 7.48 keV Ni Kα1 and 8.05 keV Cu Kα1 emissions using an intense X-ray free-electron laser (XFEL) pulse. This achievement – the realization of simultaneous two-color X-ray lasing using a single-color XFEL pulse – is expected to advance the development of X-ray lasers and their applications.
more ...

| IUCrData IUCrData |

menu



