forthcoming articles

The following articles are a selection of those recently accepted for publication in IUCr journals.

Journal logoActa Crystallographica Section A
Acta Crystallographica
Section A
FOUNDATIONS AND ADVANCES
Accepted 18 July 2024

Superstructure reflections in tilted perovskites

Boolean conditions are derived from the structure-factor equation, relating distortions of a prototype perovskite structure to the emergence of superstructure reflections.

Accepted 12 June 2024

On uniform edge-n-colorings of tilings

A method is presented in this paper to arrive at uniform edge-n-colorings of uniform tilings using concepts in group theory and color symmetry theory.
Journal logoActa Crystallographica Section B
Acta Crystallographica
Section B
STRUCTURAL SCIENCE, CRYSTAL ENGINEERING AND MATERIALS

Accepted 15 July 2024

Substitutional/positional disorder of biguanide and guanylurea in a stable 3-D network in the structure of a double/triple salt decavanadate complex [(Bg)(HV10O285−)]0.4[(HGU+)(V10O286−)]0.6 (H2Met2+)2(H3O+)·8H2O

In a new example of a previously reported charge-stabilized framework involving diprotonated metformin, decavanadate, and waters of hydration, monoprotonated guanylurea and biguanide are substitutionally disordered in the 3-D network's spaces. This disorder necessitates two charge balance situations in the network. Biguanide has seven concerted hydrogen-bonds to the decavanadate anion, suggesting a biguanide-decavanadate synthon similarto the previously reported guanylurea-decavanadate synthon.

Accepted 9 July 2024

New insights into the magnetism and magnetic structure of LuCrO3 perovskite

The magnetic structure of LuCrO3 has G-type antiferromagnetic ordering, with Cr3+ moments approximately aligned along the b axis, and a subtle canting along the c direction. The Néel temperature increases from 112.6 K to 116.0 K upon external pressure (up to 1.45 GPa).

Accepted 5 July 2024

A short note on the use of irreducible representations for tilted octahedra in perovskites

Comment on the use of irreducible representations to denote tilting of octahedra in perovskites.

Accepted 4 July 2024

Importance of powder diffraction raw data archival in a curated database for materials science applications

Powder diffraction finds application in phase identification, quantitative analysis and microstructure characterization. Conventional d-spacing and relative intensity data found in the Powder Diffraction File database are enhanced with the inclusion of raw diffraction data, especially in characterizing samples with poor crystallinity, disorder, and interesting microstructure.

Accepted 19 June 2024

Solvatomorphism in a series of copper(II) complexes with the 5-phenyl­imidazole/perchlorate system as ligands

The reactions of Cu(ClO4)2·6H2O and L′H in a variety of solvents have provided access to 12 solvatomorphs of the general formula [Cu(ClO4)2(LH)4x(solvent); the effect of the solvents on the packing of the complexes is critically discussed.

Accepted 13 June 2024

Orientational and crystallographic relationships in thin films of yttrium orthoferrite on sapphire substrates

An algorithm is proposed for determining the orientational relationships and crystal unit-cell parameters of thin films using a laboratory X-ray diffractometer and stereographic projections. It is illustrated by the treatment of experimental data obtained for yttrium orthoferrite YFeO3 films on single crystalline sapphire (Al2O3) substrates.

Accepted 29 May 2024

Contrasting conformational behaviors of molecules XXXI and XXXII in the seventh blind test of crystal structure prediction

The conformational energies and crystal energy landscapes for molecules XXXI and XXXII from the seventh blind test of crystal structure prediction are investigated with a variety of electronic structure methods. Whereas molecule XXXI can be modeled relatively straightforwardly, molecule XXXII proves challenging even for state-of-the-art quantum chemistry techniques.
Journal logoActa Crystallographica Section C
Acta Crystallographica
Section C
STRUCTURAL CHEMISTRY

Accepted 22 July 2024

2,4-Di­aryl­pyrroles: synthesis, characterization and crystallographic insights

The crystallographic analysis of two novel pyrroles is reported. A nitrosyl derivative revealed strong hydrogen-bond inter­actions and bifurcated halogen bonds that lead to inter­stitial voids.

Accepted 18 July 2024

Formation of a di­iron–(μ-η11-CN) com­plex from aceto­nitrile solution

A di­iron end-on μ211-CN-bridged com­plex is obtained from a crystallization experiment of an open-chain iron–NHC com­plex. The cyanide appears to originate from the aceto­nitrile (MeCN) solvent by C—C bond cleavage or through C—H oxidation.

Accepted 18 July 2024

Ruthenium(II) 10,10-di­methyl-5,15-bis­(penta­fluoro­phen­yl)biladiene dicarbon­yl: discovery of the first ruthenium tetra­pyrrole cis-di­carbonyl complex

The structure of a CO2 reduction photo­catalyst prototype, the first cis-dicarbonyl ruthenium(II) tetra­pyrrole complex, has been determined by X-ray and electron diffraction to have an unprecedented seesaw-coordinated biladiene ligand.

Accepted 18 July 2024

Further evaluation of the shape of atomic Hirshfeld surfaces: M⋯H contacts and homoatomic bonds

The sensitivity of atomic Hirshfeld surfaces is further validated through the evaluation of contacts of type M⋯H and through the variations in curvature for C—C bonds depending on the hybridization of the C atoms.

Accepted 17 July 2024

A luminescent Cu2I2P2S2-type binuclear com­plex and its fluorescence sensing for pyridine

In the title Cu2I2P2S2-type binuclear com­plex, Cu2I2TPP2TU2, TPP (triphenylphosphine) and TU (thiourea) adopt terminal coordinations, and the two CuI centres are bridged by two μ2-I ligands. After com­posite processing, the paper-based film based on the title com­plex exhibits obvious luminescence light-up sensing for pyridine and 4-methyl­pyridine.

Accepted 17 July 2024

Occupational modulation in the (3+1)-dimensional incommensurate structure of (2S,3S)-2-amino-3-hy­droxy-3-methyl-4-phen­oxy­butanoic acid dihydrate

The (3+1)-dimensional incommensurate structure of (2S,3S)-2-amino-3-hy­droxy-3-methyl-4-phen­oxy­butanoic acid dihydrate (I·2H2O), in which one of the water mol­ecules is disordered over two positions and each position exhibits occupational modulation, can be well refined in superspace, and in the average and supercell approximations. The occupational modulation of the disordered solvent water mol­ecule results from the com­petition between the different hy­dro­gen-bonding motifs associated with the two disorder positions of the water mol­ecule.

Accepted 15 July 2024

The influence of the axial group on the crystal structures of boron sub­phthalo­cyan­ines

The crystal structures of an array of 16 boron sub­phthalo­cy­an­ines with structurally diverse axial groups were analyzed and com­pared based on their inter­molecular inter­actions, axial bond lengths and bowl depths.

Accepted 12 July 2024

Concerning the structures of Lewis base adducts of titanium(IV) hexa­fluoro­iso­pro­pox­ide

The reaction of titanium(IV) chloride with sodium hexa­fluoro­iso­pro­pox­ide, carried out in hexa­fluoro­iso­propanol, produces titanium(IV) hexa­fluoro­iso­pro­pox­ide, which is a liquid at room temperature. Recrystallization from coordinating solvents, such as aceto­nitrile or tetra­hydro­furan, results in the formation of bis-solvate com­plexes. These com­pounds are of inter­est as possible Ziegler–Natta polymerization catalysts.

Accepted 12 July 2024

A brief review on com­puter simulations of chal­copy­rite surfaces: structure and reactivity

Review of com­putational simulations of the chal­co­py­rite structure, oxidations and inter­actions with collectors.
Journal logoActa Crystallographica Section D
Acta Crystallographica
Section D
STRUCTURAL BIOLOGY

Accepted 10 July 2024

Likelihood-based interactive local docking into cryo-EM maps in ChimeraX

Likelihood-based cryo-EM docking using the emplace_local software is faster and more sensitive than the related em_placement software when the approximate location of a component is known. It is conveniently available through a plugin to the ChimeraX visualization software.
Journal logoActa Crystallographica Section E
Acta Crystallographica
Section E
CRYSTALLOGRAPHIC COMMUNICATIONS

Accepted 23 July 2024

Synthesis, crystal structure and Hirshfeld surface of ethyl 2-[2-(methyl­sulfan­yl)-5-oxo-4,4-di­phenyl-4,5-di­hydro-1H-imidazol-1-yl]acetate (thio­phenytoin derivative)

The di­hydro­imidazole ring in the title mol­ecule is slightly distorted and the lone pair on the tri-coordinate nitro­gen atom is involved in intra-ring π bonding. In the crystal, C—H⋯O hydrogen bonds form inversion dimers, which are connected along the a- and c-axis directions by additional C—H⋯O hydrogen bonds, forming layers parallel to the ac plane.

Accepted 22 July 2024

Crystal structures of seven gold(III) complexes of the form LAuX3 (L = substituted pyridine, X = Cl or Br)

The structures of seven complexes of general formula LAuX3 (L = methyl­pyridines or di­methyl­pyridines, X = Cl or Br) are presented. In the crystal packing, a frequent feature is the offset-stacked and approximately rectangular dimeric moiety (Au—X)2, linked by Au⋯X contacts.

Accepted 19 July 2024

Pyrazine-bridged polymetallic copper–iridium clusters

The title mol­ecule is centrosymmetric, with a pyrazine ligand bridging two {Cu10Ir3} cluster units that are arranged in an unusual shape containing 13 vertices, 22 faces, and 32 sides.

Accepted 17 July 2024

Variable temperature studies of tetra­pyridine­silver(I) hexa­fluoro­phosphate and tetra­pyridine­silver(I) hexa­fluoro­anti­monate

Structures of tetra­pyridine­silver(I) hexa­fluoro­phosphate and tetra­pyridine silver(I) hexa­fluoro­anti­monate are reported from data collected at 300 K and 100 K.

Accepted 6 May 2024

Structural multiplicity in a multi-component solvated crystal of the anti­retroviral protease inhibitor Lopinavir

The multi-component solvated Lopinavir crystal was prepared using evaporative methods. The crystal structure is unusual in that although Lopinavir was crystallized in ethyl­ene glycol (ethane-1,2-diol) alone, the unit cell contains four different components, totalling 18 mol­ecules. The stoichiometric ratio of this crystal is eight lopinavir mol­ecules, two ethane-1,2-diol mol­ecules, one (E)-ethene-1,2-diol (C2H4O2) and seven water mol­ecules.
Journal logoActa Crystallographica Section F
Acta Crystallographica
Section F
STRUCTURAL BIOLOGY COMMUNICATIONS

Accepted 17 July 2024

Crystallographic fragment screen of the c-di-AMP-synthesizing enzyme CdaA from Bacillus subtilis

The crystal structure determination of CdaA enzymes from Streptococcus pneumoniae, Bacillus subtilis and Enterococcus faecium is reported. Additionally, the structural results of a fragment screen of B. subtilis CdaA are presented, along with a subsequent in silico drug-repurposing screen conducted using the OpenEye suite.

Accepted 17 July 2024

Structures of Brucella ovis leucine-, isoleucine-, valine-, threonine- and alanine-binding protein reveal a conformationally flexible peptide-binding cavity

B. ovis leucine-, isoleucine-, valine-, threonine- and alanine-binding protein structures have a prototypical bacterial periplasmic amino acid-binding protein topology with a conformationally flexible peptide-binding cavity in the absence of peptide.
Journal logoJournal of Applied Crystallography Journal of Applied
Crystallography

Accepted 19 July 2024

Laboratory-based 3D X-ray standing-wave analysis of nanometre-scale gratings

3D X-ray Standing Waves (XSW) is a new method for characterization of the 3D atomic profiles of planar periodic nano-structures, like nm-sized gratings or pillar arrays. Here we demonstrate the laboratory 3D XSW analysis of TiN gratings with nm-sized pitches.

Accepted 18 July 2024

NIPDS: a comprehensive database on the molecular interactions in protein dimer structures

We have developed a comprehensive database that comprises protein dimeric structures and their respective interactions. This database provides valuable insights into the medium of interaction, including water, small molecules, and direct interactions. The information contained in this database can be particularly useful for researchers and professionals alike who are working in the field of protein studies.

Accepted 18 July 2024

Practical courses on advanced methods in macromolecular crystallization: 20 years of history and the future perspective

Since 2004, the University of South Bohemia has been establishing a tradition in protein crystallography through practical crystallization courses organized under the auspices of the Federation of Biochemical Societies.

Accepted 14 July 2024

Revisit of the `magic condition' based on the Takagi–Taupin theory

Takagi–Taupin dynamical X-ray diffraction simulations of cylindrically bent Laue crystals show that, in specific diffraction geometries, the focusing behaviour of bent Laue crystals is significantly influenced by dynamical effects, causing the foci of different energies to deviate from the predictions of the `magic condition' derived from geometric optics theory.

Accepted 13 July 2024

Ptychographic phase retrieval via deep-learning-assisted iterative algorithm

This paper proposes a ptychographic phase retrieval algorithm combined with a deep neural network (DNN). The proposed method allows the measurement model to be explicitly incorporated into the DNN-based approach, improving imaging capability and robustness to changes in experimental conditions.


Accepted 10 July 2024

Revealing nanoscale sorption mechanisms of gases in highly porous silica aerogel

This research uses contrast-matching SANS to investigate adsorption behaviour of deuterated methane in silica aerogel in the pressure range from 0 to 1 kbar. The results reveal a classical reversible two-phase adsorption in the 2.5–50 nm pore size region and no evidence of condensation in the sub-nanometre pores.

Accepted 9 July 2024

Simulating and modelling the detergent corona around the membrane protein MhsT based on SAXS data

A SAXS-based modelling of various detergents around MhsT correlates a variation in the shape of the detergent corona with the detergent tail length.

Accepted 2 July 2024

The effect of specimen displacement in X-ray powder diffraction measurements with laboratory diffractometers

The effect of specimen displacement for different experimental geometries has been investigated. The new results allow the accurate analysis of data collected with large displacements.

Accepted 1 July 2024

AutoRefl: active learning in neutron reflectometry for fast data acquisition

AutoRefl is an active learning algorithm for neutron reflectometry measurements that maximizes the information acquisition rate in specific model parameters, thereby improving measurement speeds. Its forecasting capability is particularly useful for integration with data acquisition systems without loss of data quality.

more ...
Journal logoJournal of Synchrotron Radiation Journal of
Synchrotron Radiation

Accepted 23 July 2024

Indirect detector for ultra-high speed X-ray micro-imaging with increased sensitivity to near-ultraviolet scintillator emission


Accepted 13 July 2024

Prediction of the treatment effect of FLASH radiotherapy with Circular Electron-Positron Collider (CEPC) synchrotron radiation

CEPC synchrotron radiation beam can be considered as one of the best beams for FLASH radiotherapy after using a physicochemical model to predict the macroscopic therapeutic effect.

Accepted 12 July 2024

Development of an advanced in-line multilayer deposition system at Diamond Light Source


Accepted 8 July 2024

Investigating the missing-wedge problem in small-angle X-ray scattering tensor tomography across real and reciprocal space


Accepted 8 July 2024

The soft X-ray spectromicroscopy beamline BL08U1A upgrade at SSRF

The upgrading of BL08U1A has been conducted recently. The energy range reaches 180~2050 eV; the energy resolution reaches 16333 @244 eV, 12730 @401 eV; the photon flux measured in the experimental station is over 2.45×109 photons s-1 (E/ΔE = 6440@244 eV).

Accepted 4 July 2024

Development of a flat jet delivery system for soft X-ray spectroscopy at MAX IV

Our work presents recent advancements in 3D-printed nozzles for liquid jet spectroscopy, made possible by the availability of nozzle development and testing facilities at EuXFEL, Germany. We also demonstrate the performance of one of these custom-designed nozzles in a new flat jet system under commissioning at MAX IV Laboratory in Lund, Sweden, introducing a new injection method to analyze flat liquid surfaces and opening new possibilities for the spectroscopy community.

Accepted 3 July 2024

Hyperspectral full-field Quick-EXAFS imaging at the ROCK beamline for monitoring micrometre-sized heterogeneity of functional materials under process conditions

FF hyperspectral XAS imaging implemented at a Quick-EXAFS beamline offers the capability to add micrometre-scale information to second time resolution for operando monitoring of functional materials under process condition.

Accepted 2 July 2024

Correcting angular distortions in Bragg coherent X-ray diffraction imaging

In our study, we have developed an algorithm that effectively corrects and tracks these angular distortions, enabling BCDI to work much more robustly and accurately in a wider range of challenging experimental scenarios.

Accepted 2 July 2024

Vibrational stability improvement of a mirror system using active mass damping

Active damping with internal absolute velocity feedback was implemented to damp the angular vibration of the mirror holder for free-electron laser beam transportation.

Accepted 2 July 2024

Using convolutional neural network denoising to reduce ambiguity in X-ray coherent diffraction imaging

Ambiguity, which is an intrinsic characteristic of coherent diffraction imaging during image retrieval, can be reduced using machine learning.

more ...IUCrJ
Accepted 24 July 2024

The crystal structure of olanzapine form III

This paper reports the crystal structure determination of olanzapine form III by 3D electron diffraction, the last unknown anhydrous polymorph in the olanzapine complex polytypism scenario.

Accepted 18 July 2024

CheckMyMetal (CMM): Validating Metal-Binding Sites in X-ray and Cryo-EM Data

Recent updates to CMM have significantly enhanced its capability to efficiently handle large datasets, including those generated from cryo-EM structural analyses.

Accepted 10 July 2024

Phase qu­antification using deep neural network processing of XRD patterns

A deep neural network approach to the identification and quantification of powder X-ray diffraction patterns was applied and proved successful for the quantitative description of complex mineralogical assemblages consisting of up to 4 minerals having different structures, including different space groups for which data augmentation cannot be performed straightforwardly.

Accepted 9 July 2024

On the structure refinement of metal complexes against 3D electron diffraction data using multipolar scattering factors

We apply for the first time Transferable Aspherical Atom Model (TAAM) for the refinement of a metal complex structure against 3D ED data. Our results show that TAAM significantly outperforms the Independent Atom Model (IAM) by more accurately depicting the electrostatic potential, particularly in low-resolution ranges. We found that using TAAM for the organic ligand is more important than accurate description of the metal centre in refinement against 3D ED data.

Accepted 27 June 2024

Binding structures of SERF1a with NT17-polyQ peptides of huntingtin exon 1 revealed by SEC-SWAXS, NMR and molecular simulation

Binding structures of SERF1a with the N-terminal fragment of huntingtin exon 1 and NT17-polyQ peptides are revealed using an integrated analysis of size-exclusion-column-based small- and wide-angle X-ray scattering (SEC-SWAXS), NMR, and molecular simulation.

Accepted 27 June 2024

Bridging length scales in hard materials with ultra-small angle X-ray scattering – a critical review

This review examines the use of ultra-small angle X-ray scattering (USAXS), a nondestructive technique for analyzing the multi-scale microstructures of hard materials such as ceramics, metals and composites. It discusses the principles, benefits and challenges of USAXS, along with its potential to advance materials development and optimize manufacturing processes, while also considering future enhancements through multimodal characterization and machine learning.

Accepted 24 June 2024

Exploring serial crystallography for drug discovery

In this work, serial crystallography is applied to a drug discovery target and the room-temperature ligand-bound complexes are used to explore temperature-dependent structural differences.

Accepted 18 June 2024

Refinement of cryo-EM 3D maps with a self-supervised denoising model: crefDenoiser

State-of-the-art 3D cryo-EM map denoising with a self-supervised neural network model optimized for theoretical noise-free maps is introduced.
Journal logoIUCrData
IUCrData

Accepted 21 July 2024

6-Benzene)­chlorido­[(S)-2-(4-iso­propyl-4,5-di­hydro­oxazol-2-yl)phenolato]ruthenium(II)

The title compound, [Ru(C12H14NO2)Cl(η6-C6H6)], exhibits a half-sandwich tripod stand structure and crystallizes in the ortho­rhom­bic space group P212121. The arene group is η6 π-coordinated to the Ru atom with a centroid-to-metal distance of 1.6590 (5) Å, with the (S)-2-(4-isopropyl-4,5-di­hydro­oxazol-2-yl)phenolate chelate ligand forming a bite angle of 86.88 (19)° through its N and phenolate O atoms.

Accepted 3 July 2024

Pinaverium bromide

The title compound is a morpholinium derivative with the positive charge located on the N atom.


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