forthcoming articles
The following articles are a selection of those recently accepted for publication in IUCr journals.
![]() | Acta Crystallographica Section A Acta Crystallographica Section A FOUNDATIONS AND ADVANCES |
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![]() | Acta Crystallographica Section B Acta Crystallographica Section B STRUCTURAL SCIENCE, CRYSTAL ENGINEERING AND MATERIALS |
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Substitutional/positional disorder of biguanide and guanylurea in a stable 3-D network in the structure of a double/triple salt decavanadate complex [(Bg)(HV10O285−)]0.4[(HGU+)(V10O286−)]0.6 (H2Met2+)2(H3O+)·8H2O
In a new example of a previously reported charge-stabilized framework involving diprotonated metformin, decavanadate, and waters of hydration, monoprotonated guanylurea and biguanide are substitutionally disordered in the 3-D network's spaces. This disorder necessitates two charge balance situations in the network. Biguanide has seven concerted hydrogen-bonds to the decavanadate anion, suggesting a biguanide-decavanadate synthon similarto the previously reported guanylurea-decavanadate synthon.
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New insights into the magnetism and magnetic structure of LuCrO3 perovskite
The magnetic structure of LuCrO3 has G-type antiferromagnetic ordering, with Cr3+ moments approximately aligned along the b axis, and a subtle canting along the c direction. The Néel temperature increases from 112.6 K to 116.0 K upon external pressure (up to 1.45 GPa).
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Importance of powder diffraction raw data archival in a curated database for materials science applications
Powder diffraction finds application in phase identification, quantitative analysis and microstructure characterization. Conventional d-spacing and relative intensity data found in the Powder Diffraction File database are enhanced with the inclusion of raw diffraction data, especially in characterizing samples with poor crystallinity, disorder, and interesting microstructure.
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Solvatomorphism in a series of copper(II) complexes with the 5-phenylimidazole/perchlorate system as ligands
The reactions of Cu(ClO4)2·6H2O and L′H in a variety of solvents have provided access to 12 solvatomorphs of the general formula [Cu(ClO4)2(LH)4]·x(solvent); the effect of the solvents on the packing of the complexes is critically discussed.
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Orientational and crystallographic relationships in thin films of yttrium orthoferrite on sapphire substrates
An algorithm is proposed for determining the orientational relationships and crystal unit-cell parameters of thin films using a laboratory X-ray diffractometer and stereographic projections. It is illustrated by the treatment of experimental data obtained for yttrium orthoferrite YFeO3 films on single crystalline sapphire (Al2O3) substrates.
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Contrasting conformational behaviors of molecules XXXI and XXXII in the seventh blind test of crystal structure prediction
The conformational energies and crystal energy landscapes for molecules XXXI and XXXII from the seventh blind test of crystal structure prediction are investigated with a variety of electronic structure methods. Whereas molecule XXXI can be modeled relatively straightforwardly, molecule XXXII proves challenging even for state-of-the-art quantum chemistry techniques.
![]() | Acta Crystallographica Section C Acta Crystallographica Section C STRUCTURAL CHEMISTRY |
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Formation of a diiron–(μ-η1:η1-CN) complex from acetonitrile solution
A diiron end-on μ2-η1:η1-CN-bridged complex is obtained from a crystallization experiment of an open-chain iron–NHC complex. The cyanide appears to originate from the acetonitrile (MeCN) solvent by C—C bond cleavage or through C—H oxidation.
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Ruthenium(II) 10,10-dimethyl-5,15-bis(pentafluorophenyl)biladiene dicarbonyl: discovery of the first ruthenium tetrapyrrole cis-dicarbonyl complex
The structure of a CO2 reduction photocatalyst prototype, the first cis-dicarbonyl ruthenium(II) tetrapyrrole complex, has been determined by X-ray and electron diffraction to have an unprecedented seesaw-coordinated biladiene ligand.
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Further evaluation of the shape of atomic Hirshfeld surfaces: M⋯H contacts and homoatomic bonds
The sensitivity of atomic Hirshfeld surfaces is further validated through the evaluation of contacts of type M⋯H and through the variations in curvature for C—C bonds depending on the hybridization of the C atoms.
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A luminescent Cu2I2P2S2-type binuclear complex and its fluorescence sensing for pyridine
In the title Cu2I2P2S2-type binuclear complex, Cu2I2TPP2TU2, TPP (triphenylphosphine) and TU (thiourea) adopt terminal coordinations, and the two CuI centres are bridged by two μ2-I ligands. After composite processing, the paper-based film based on the title complex exhibits obvious luminescence light-up sensing for pyridine and 4-methylpyridine.
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Occupational modulation in the (3+1)-dimensional incommensurate structure of (2S,3S)-2-amino-3-hydroxy-3-methyl-4-phenoxybutanoic acid dihydrate
The (3+1)-dimensional incommensurate structure of (2S,3S)-2-amino-3-hydroxy-3-methyl-4-phenoxybutanoic acid dihydrate (I·2H2O), in which one of the water molecules is disordered over two positions and each position exhibits occupational modulation, can be well refined in superspace, and in the average and supercell approximations. The occupational modulation of the disordered solvent water molecule results from the competition between the different hydrogen-bonding motifs associated with the two disorder positions of the water molecule.
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The influence of the axial group on the crystal structures of boron subphthalocyanines
The crystal structures of an array of 16 boron subphthalocyanines with structurally diverse axial groups were analyzed and compared based on their intermolecular interactions, axial bond lengths and bowl depths.
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Concerning the structures of Lewis base adducts of titanium(IV) hexafluoroisopropoxide
The reaction of titanium(IV) chloride with sodium hexafluoroisopropoxide, carried out in hexafluoroisopropanol, produces titanium(IV) hexafluoroisopropoxide, which is a liquid at room temperature. Recrystallization from coordinating solvents, such as acetonitrile or tetrahydrofuran, results in the formation of bis-solvate complexes. These compounds are of interest as possible Ziegler–Natta polymerization catalysts.
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![]() | Acta Crystallographica Section D Acta Crystallographica Section D STRUCTURAL BIOLOGY |
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Likelihood-based interactive local docking into cryo-EM maps in ChimeraX
Likelihood-based cryo-EM docking using the emplace_local software is faster and more sensitive than the related em_placement software when the approximate location of a component is known. It is conveniently available through a plugin to the ChimeraX visualization software.
![]() | Acta Crystallographica Section E Acta Crystallographica Section E CRYSTALLOGRAPHIC COMMUNICATIONS |
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Synthesis, crystal structure and Hirshfeld surface of ethyl 2-[2-(methylsulfanyl)-5-oxo-4,4-diphenyl-4,5-dihydro-1H-imidazol-1-yl]acetate (thiophenytoin derivative)
The dihydroimidazole ring in the title molecule is slightly distorted and the lone pair on the tri-coordinate nitrogen atom is involved in intra-ring π bonding. In the crystal, C—H⋯O hydrogen bonds form inversion dimers, which are connected along the a- and c-axis directions by additional C—H⋯O hydrogen bonds, forming layers parallel to the ac plane.
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Crystal structures of seven gold(III) complexes of the form LAuX3 (L = substituted pyridine, X = Cl or Br)
The structures of seven complexes of general formula LAuX3 (L = methylpyridines or dimethylpyridines, X = Cl or Br) are presented. In the crystal packing, a frequent feature is the offset-stacked and approximately rectangular dimeric moiety (Au—X)2, linked by Au⋯X contacts.
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Variable temperature studies of tetrapyridinesilver(I) hexafluorophosphate and tetrapyridinesilver(I) hexafluoroantimonate
Structures of tetrapyridinesilver(I) hexafluorophosphate and tetrapyridine silver(I) hexafluoroantimonate are reported from data collected at 300 K and 100 K.
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Structural multiplicity in a multi-component solvated crystal of the antiretroviral protease inhibitor Lopinavir
The multi-component solvated Lopinavir crystal was prepared using evaporative methods. The crystal structure is unusual in that although Lopinavir was crystallized in ethylene glycol (ethane-1,2-diol) alone, the unit cell contains four different components, totalling 18 molecules. The stoichiometric ratio of this crystal is eight lopinavir molecules, two ethane-1,2-diol molecules, one (E)-ethene-1,2-diol (C2H4O2) and seven water molecules.
![]() | Acta Crystallographica Section F Acta Crystallographica Section F STRUCTURAL BIOLOGY COMMUNICATIONS |
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Crystallographic fragment screen of the c-di-AMP-synthesizing enzyme CdaA from Bacillus subtilis
The crystal structure determination of CdaA enzymes from Streptococcus pneumoniae, Bacillus subtilis and Enterococcus faecium is reported. Additionally, the structural results of a fragment screen of B. subtilis CdaA are presented, along with a subsequent in silico drug-repurposing screen conducted using the OpenEye suite.
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Structures of Brucella ovis leucine-, isoleucine-, valine-, threonine- and alanine-binding protein reveal a conformationally flexible peptide-binding cavity
B. ovis leucine-, isoleucine-, valine-, threonine- and alanine-binding protein structures have a prototypical bacterial periplasmic amino acid-binding protein topology with a conformationally flexible peptide-binding cavity in the absence of peptide.
![]() | Journal of Applied Crystallography Journal of Applied Crystallography |
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Laboratory-based 3D X-ray standing-wave analysis of nanometre-scale gratings
3D X-ray Standing Waves (XSW) is a new method for characterization of the 3D atomic profiles of planar periodic nano-structures, like nm-sized gratings or pillar arrays. Here we demonstrate the laboratory 3D XSW analysis of TiN gratings with nm-sized pitches.
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NIPDS: a comprehensive database on the molecular interactions in protein dimer structures
We have developed a comprehensive database that comprises protein dimeric structures and their respective interactions. This database provides valuable insights into the medium of interaction, including water, small molecules, and direct interactions. The information contained in this database can be particularly useful for researchers and professionals alike who are working in the field of protein studies.
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Practical courses on advanced methods in macromolecular crystallization: 20 years of history and the future perspective
Since 2004, the University of South Bohemia has been establishing a tradition in protein crystallography through practical crystallization courses organized under the auspices of the Federation of Biochemical Societies.
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Revisit of the `magic condition' based on the Takagi–Taupin theory
Takagi–Taupin dynamical X-ray diffraction simulations of cylindrically bent Laue crystals show that, in specific diffraction geometries, the focusing behaviour of bent Laue crystals is significantly influenced by dynamical effects, causing the foci of different energies to deviate from the predictions of the `magic condition' derived from geometric optics theory.
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Ptychographic phase retrieval via deep-learning-assisted iterative algorithm
This paper proposes a ptychographic phase retrieval algorithm combined with a deep neural network (DNN). The proposed method allows the measurement model to be explicitly incorporated into the DNN-based approach, improving imaging capability and robustness to changes in experimental conditions.
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Revealing nanoscale sorption mechanisms of gases in highly porous silica aerogel
This research uses contrast-matching SANS to investigate adsorption behaviour of deuterated methane in silica aerogel in the pressure range from 0 to 1 kbar. The results reveal a classical reversible two-phase adsorption in the 2.5–50 nm pore size region and no evidence of condensation in the sub-nanometre pores.
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The effect of specimen displacement in X-ray powder diffraction measurements with laboratory diffractometers
The effect of specimen displacement for different experimental geometries has been investigated. The new results allow the accurate analysis of data collected with large displacements.
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AutoRefl: active learning in neutron reflectometry for fast data acquisition
AutoRefl is an active learning algorithm for neutron reflectometry measurements that maximizes the information acquisition rate in specific model parameters, thereby improving measurement speeds. Its forecasting capability is particularly useful for integration with data acquisition systems without loss of data quality.
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![]() | Journal of Synchrotron Radiation Journal of Synchrotron Radiation |
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Prediction of the treatment effect of FLASH radiotherapy with Circular Electron-Positron Collider (CEPC) synchrotron radiation
CEPC synchrotron radiation beam can be considered as one of the best beams for FLASH radiotherapy after using a physicochemical model to predict the macroscopic therapeutic effect.
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The soft X-ray spectromicroscopy beamline BL08U1A upgrade at SSRF
The upgrading of BL08U1A has been conducted recently. The energy range reaches 180~2050 eV; the energy resolution reaches 16333 @244 eV, 12730 @401 eV; the photon flux measured in the experimental station is over 2.45×109 photons s-1 (E/ΔE = 6440@244 eV).
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Development of a flat jet delivery system for soft X-ray spectroscopy at MAX IV
Our work presents recent advancements in 3D-printed nozzles for liquid jet spectroscopy, made possible by the availability of nozzle development and testing facilities at EuXFEL, Germany. We also demonstrate the performance of one of these custom-designed nozzles in a new flat jet system under commissioning at MAX IV Laboratory in Lund, Sweden, introducing a new injection method to analyze flat liquid surfaces and opening new possibilities for the spectroscopy community.
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Hyperspectral full-field Quick-EXAFS imaging at the ROCK beamline for monitoring micrometre-sized heterogeneity of functional materials under process conditions
FF hyperspectral XAS imaging implemented at a Quick-EXAFS beamline offers the capability to add micrometre-scale information to second time resolution for operando monitoring of functional materials under process condition.
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Correcting angular distortions in Bragg coherent X-ray diffraction imaging
In our study, we have developed an algorithm that effectively corrects and tracks these angular distortions, enabling BCDI to work much more robustly and accurately in a wider range of challenging experimental scenarios.
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Phase quantification using deep neural network processing of XRD patterns
A deep neural network approach to the identification and quantification of powder X-ray diffraction patterns was applied and proved successful for the quantitative description of complex mineralogical assemblages consisting of up to 4 minerals having different structures, including different space groups for which data augmentation cannot be performed straightforwardly.
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On the structure refinement of metal complexes against 3D electron diffraction data using multipolar scattering factors
We apply for the first time Transferable Aspherical Atom Model (TAAM) for the refinement of a metal complex structure against 3D ED data. Our results show that TAAM significantly outperforms the Independent Atom Model (IAM) by more accurately depicting the electrostatic potential, particularly in low-resolution ranges. We found that using TAAM for the organic ligand is more important than accurate description of the metal centre in refinement against 3D ED data.
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Binding structures of SERF1a with NT17-polyQ peptides of huntingtin exon 1 revealed by SEC-SWAXS, NMR and molecular simulation
Binding structures of SERF1a with the N-terminal fragment of huntingtin exon 1 and NT17-polyQ peptides are revealed using an integrated analysis of size-exclusion-column-based small- and wide-angle X-ray scattering (SEC-SWAXS), NMR, and molecular simulation.
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Bridging length scales in hard materials with ultra-small angle X-ray scattering – a critical review
This review examines the use of ultra-small angle X-ray scattering (USAXS), a nondestructive technique for analyzing the multi-scale microstructures of hard materials such as ceramics, metals and composites. It discusses the principles, benefits and challenges of USAXS, along with its potential to advance materials development and optimize manufacturing processes, while also considering future enhancements through multimodal characterization and machine learning.
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![]() | IUCrData IUCrData |
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(η6-Benzene)chlorido[(S)-2-(4-isopropyl-4,5-dihydrooxazol-2-yl)phenolato]ruthenium(II)
The title compound, [Ru(C12H14NO2)Cl(η6-C6H6)], exhibits a half-sandwich tripod stand structure and crystallizes in the orthorhombic space group P212121. The arene group is η6 π-coordinated to the Ru atom with a centroid-to-metal distance of 1.6590 (5) Å, with the (S)-2-(4-isopropyl-4,5-dihydrooxazol-2-yl)phenolate chelate ligand forming a bite angle of 86.88 (19)° through its N and phenolate O atoms.
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