forthcoming articles
The following articles are a selection of those recently accepted for publication in IUCr journals.
| Acta Crystallographica Section A Acta Crystallographica Section A FOUNDATIONS AND ADVANCES |
| Acta Crystallographica Section B Acta Crystallographica Section B STRUCTURAL SCIENCE, CRYSTAL ENGINEERING AND MATERIALS |
From mystery to modulation: the structural story of Rb2[Si2O5]
The crystal structure of Rb2[Si2O5] has been solved and refined as an incommensurately modulated phase. Each [SiO4] tetrahedron of the phyllosilicate adopts one of two distinct orientations, and the positions of their constitute silicon and oxygen atoms are modeled using a combination of crenel and harmonic positional modulation functions.
KNaSiF6: a non-centrosymmetric deep ultraviolet optical crystal
Deep ultraviolet (DUV) optical materials with wide bandgaps and noncentrosymmetric structures are critical for advanced optoelectronic applications such as DUV lithography, high-resolution spectroscopy, and nonlinear optics. The combination of a deep-UV transparency window, a wide bandgap, and a noncentrosymmetric structure renders Pna21-KNaSiF6 a promising candidate for next generation DUV optical windows and nonlinear optical crystals.
| Acta Crystallographica Section C Acta Crystallographica Section C STRUCTURAL CHEMISTRY |
Multicomponent crystals of nitroimidazole drugs with trithiocyanuric acid: two competing drug–coformer supramolecular motifs
Trithiocyanuric acid forms either R22(8) dimers or linear chain motifs in nitroimidazole cocrystals, giving rise to two competing drug–coformer supramolecular binding schemes.
When the crucible contributes: serendipitous formation, flux reactivity, and crystal and electronic structures of two aluminium-bearing mixed-metal oxides
Alumina crucibles act as unintended aluminium sources in Pb-flux syntheses, yielding two heavily disordered metal oxides, with Pb3GeAl10O20- and BaZnGeO4-related structures.
Uranyl derivatives: discovering features by comparing related crystal structures
A brief overview of the existing data on related UO22+-containing crystal structures uncovered some peculiarities about three new derivatives. The first crystal structure with simultaneously present H3O+ and Be2+ cations was solved. The rigidity of topology to the change of the nature of the fragments and ways to control the atom environment via the ratio of the reagents are discussed.
Tuning helical chirality and physical properties in chiral lactate-based coordination polymers by varying metal centres and auxiliary ligands
By altering the metal centre and auxiliary ligand, two chiral lactate-based coordination polymers exhibit distinct helical chirality expressions and properties.
Synthesis, structural characterization, and electronic structure of monoclinic α-[SeCl3][MoOCl4]
Moisture-sensitive trichloridoselenium tetrachloridooxidomolybdate, α-[SeCl3][MoOCl4], was synthesized from MoOCl4 and Se2Cl2, and structurally characterized by single-crystal X-ray diffraction, revealing a layered ionic solid comprising [SeCl3]+ cations and dimeric [Mo2O2Cl8]2− anions linked through secondary Se⋯Cl interactions, with electronic structure analysis indicating semiconducting behavior.
Water-bridged tetrameric supramolecular synthons in a novel tetrasubstituted imidazole–phenylalanine derivative synthesized via a Debus–Radziszewski reaction
A new imidazole derivative of phenylalanine was synthesized, the crystals displaying dimeric and/or tetrameric structures with unusual water double bridges.
YK-4-250, a synthetic telmisartan–tempol conjugate: crystal structure of a stabilized free radical containing an angiotensin AT1 receptor inhibitor
The first crystal structure of the telmisartan–tempol conjugate YK-4-250 is reported, revealing the intramolecular C–H⋯π interactions that stabilize the nitroxide radical while preserving the angiotensin AT1 receptor antagonist pharmacophore.
Peculiarity of atomic displacements in garnets discovered through a single-crystal X-ray diffraction study of the Na-bearing vanadate garnet series
Garnets where the mean-square displacements of the tetrahedral cations are largest in the direction of adjacent dodecahedral cations were discovered through structure refinements of the Na-bearing vanadate garnet series. This peculiar atomic displacement behaviour occurs when the dodecahedral sites are occupied by different cation species with different valences and largely different sizes.
| Acta Crystallographica Section D Acta Crystallographica Section D STRUCTURAL BIOLOGY |
QwenCryoMarker: a universal post-processing framework for contamination-aware particle cleaning
QwenCryoMarker is a universal post-processing framework that removes contamination-induced false positives from any cryo-EM particle picker. Built on the Qwen Image Edit vision-language model, it generates high-precision masks of carbon, ice and impurities, and then filters raw particle coordinates with negligible loss of true particles. Validated on five CryoPPP datasets with four representative particle pickers, QwenCryoMarker consistently improves precision and F1-score, and outperforms the state-of-the-art contamination segmentation tool by 14.2% in mean intersection over union. It is plug-and-play, dataset-independent and ready for integration into mainstream cryo-EM workflows.
Single-crystal X-ray and in crystallo XANES studies resolve cobalt coordination in cobalamin and rule out radiation-induced ligand loss in human intrinsic factor
Ultrahigh-resolution crystallography combined with in crystallo Co K-edge XANES shows that cobalamin retains octahedral cobalt coordination in both oxidized and reduced states. These results rule out radiation-induced Co–CN cleavage as the cause of the missing axial ligand in intrinsic factor-bound cobalamin.
Structure and allostery in major facilitator superfamily symport mechanisms
Conformational dynamics in the melibiose/Na+ cotransporter MelB significantly influence the binding of the primary sugar substrate but have minimal effect on the co-substrate Na+. Na+ acts as an allosteric activator, increasing sugar affinity by stabilizing the inner barrier and constraining conformational flexibility.
| Acta Crystallographica Section E Acta Crystallographica Section E CRYSTALLOGRAPHIC COMMUNICATIONS |
Synthesis and crystal structures of three silicon complexes with N-[(2-hydroxynaphthalen-1-yl)methylidene]alanine
The reaction of the Schiff base ligand N-[(2-hydroxynaphthalen-1-yl)methylidene]alanine, H2L, with dichlorodiorganosilicon compounds, Cl2SiR2, yields pentacoordinated silicon complexes LSiR2.
Synthesis, structure and computational study of N-acetyl-N′-(4-chlorophenyl)thiourea
The title compound consists of a chlorophenyl ring and acetyl moiety bridged over a thiourea functional group. In the crystal, N—H⋯S and N—H⋯O hydrogen bonds link the molecules into infinite chains along the a-axis direction. Neither π–π nor C—H⋯π(ring) interactions are observed.
Trigonal crystal structure of a phosphate belonging to the ABW-type zeolite family: RbCoFe(PO4)2
In the title phosphate, all of the cations are located on tetrahedral sites, and the three different tetrahedra are linked by their vertices to form a double layer stacked along the c-axis direction. The plane formed by the rubidium atoms is sandwiched between the double layers.
| Acta Crystallographica Section F Acta Crystallographica Section F STRUCTURAL BIOLOGY COMMUNICATIONS |
Structural and functional analysis of peptidyl-tRNA hydrolase 2 from Candidatus Lokiarchaeum sp. GC14_75
The crystal structure of peptidyl-tRNA hydrolase 2 from Candidatus Lokiarchaeum sp. GC14_75 (LokiPth2) shows conformational rearrangements that may be associated with substrate recognition and catalysis. In addition, analysis of the optimal temperature for LokiPth2 activity suggests that this archaeon is a moderate thermophile.
| Journal of Applied Crystallography Journal of Applied Crystallography |
PolymCrystRefine: A Workflow for Diffraction Analysis of Polymer Crystals
An automated workflow, PolymCrystRefine, has been developed for polymer crystal structure refinement from fiber diffraction data, combining joint force field and intensity-gradient optimization, an ROI-based data exploitation scheme, and a genetic algorithm guided by fiber-specific constraints.
PolarEyes with enhanced digital imaging, a high throughput solution for locating and grading crystals
An open-source program for the calculation and visualisation of polarisation-derived properties of crystalline material is described, alongside the integration of a polarising image sensor into a DIY, high-throughput, imaging setup.
Enhancing microstructural fidelity in near-field high-energy diffraction microscopy reconstruction with Noise2Void denoising
A self-supervised deep learning model, Noise2Void (N2V), denoises near-field high-energy diffraction microscopy diffraction images without requiring unobtainable clean data. These images allow for lower segmentation thresholds and detection of smaller and weaker diffraction peaks, often discarded or overlooked with conventional image processing methods. The result is a ∼9% increase in reconstruction confidence and a more accurate representation of fine microstructural features.
A unified resolution and multiple-scattering correction framework for Spallation Neutron Source ultra-small-angle neutron scattering and complementary small-angle neutron scattering
A practical and resolution-consistent data-reduction framework is established for ultra-small-angle neutron scattering, guiding users in correcting slit-geometry smearing and multiple scattering to obtain reliable intrinsic scattering profiles across combined ultra-small-angle and small-angle neutron scattering measurements.
Absorption correction for plate samples in transmission X-ray powder diffraction: improved reliability of atomic displacement parameters
An analytical absorption correction for powder X-ray diffraction of flat plate samples in transmission geometry is presented. Independent determination of the optical thickness enables reliable refinement of atomic displacement parameters.
AES-Debye: an accurate, efficient and scalable engine for Debye scattering calculations
AES-Debye is an accurate, efficient and scalable engine for evaluating the Debye scattering equation that enables total scattering calculations for large atomistic models. Corrected pair-distance binning and numerically robust accumulation suppress discretization artifacts, while parallel CPU/GPU execution enables efficient computation of scattering intensities and pair distribution functions for structural analysis.
Isopoints in small-angle scattering. I. Form factors of inhomogeneous quasi-spherical particles under contrast variation
A general solution of the problem of observing isoscattering points in the form factors of quasi-spherical particles under contrast variation in a small-angle scattering experiment is presented. It uses the approach of basic functions extended to the practical area by considering experimental isopoints as caustic-type nodes.
Depth-resolved X-ray residual stress analysis on samples with cylindrically shaped surface topography
Modifications of the fundamental equation of X-ray stress analysis are proposed that allow correction of the hoop and longitudinal stresses obtained from sin2ψ measurements on samples featuring an inhomogeneous surface topography. The formalism is verified by angle- and energy-dispersive measurements performed on a ferritic steel sample with cylindrically shaped regions with different central angles.
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| Journal of Synchrotron Radiation Journal of Synchrotron Radiation |
A femtosecond time-resolved Bragg coherent diffraction imaging experimental setup at PAL-XFEL for nanoscale lattice dynamics studies
The XSS beamline at PAL-XFEL provides a femtosecond time-resolved Bragg coherent X-ray diffraction imaging setup, optimized for tracking transient lattice dynamics and nanoscale strain fields within single crystals during dynamic processes.
SMAXI: a machine-learning-powered open-source software for multidimensional full-field X-ray image analysis
SMAXI, a fully open-source, GPU-accelerated software platform that integrates state-of-the-art machine learning and large language model techniques into a unified workflow for X-ray image analysis is presented. SMAXI simplifies high-throughput data processing workflows and overcomes manual image analysis bottlenecks.
XAFS measurement system using undulator synchronized on-the-fly monochromator scan at SPring-8 BL36XU
Nonlinear scanning of a compact channel-cut monochromator synchronized with an undulator-gap movement system enables fast high-flux X-ray absorption fine structure measurements.
Shorter X-ray refractive lens design: a large-aperture single-lens dual-focus kinoform lens based on an oval curved surface
This paper presents a novel kinoform refractive lens and utilizes the beam propagation method to simulate the focusing performance of the lens. The results demonstrate that this lens not only enhances the gain and reduces the FWHM, but also reduces the lens length.
Single-shot hard X-ray spectrometer with uniform spatial and spectral response
We demonstrate a single-shot hard X-ray spectrometer based on small-angle scattering from glassy carbon that is insensitive to X-ray free electron laser beam-dependent spatial and spectral variations. Comparison with established X-ray Thomson scattering diagnostics using stochastic correlation X-ray spectroscopy demonstrates full-bandwidth coverage with millielectronvolt-scale spectral resolution, enabling reliable single-shot spectroscopic measurements.
Synchrotron-based multi-scale biological imaging inside biocontainment environments
Orion, the first BSL-4 synchrotron-based research complex, advances pathogen research by integrating cutting-edge, multi-scale imaging to enhance the understanding of infectious diseases and inform global health policies.
An efficient wave-optics framework for partially coherent pink X-ray beam simulation and analysis
This article proposes a new calculation method and framework for simulating a pink X-ray beam, significantly improving computational efficiency. By comparing it with the experimental data from the beamline, the simulation method is consistent with the actual situation.
Single-shot third-harmonic spectral diagnostics for tender X-ray FEL pulses using a bent-crystal spectrometer
Third-harmonic spectral monitoring with an existing bent-crystal spectrometer provides single-shot bandwidth diagnostics and real-time machine tuning for tender X-ray free-electron laser operation, and can be made non-invasive when combined with a suitable beam-sampling grating.
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Interpreting wide-angle X-ray scattering data using DNA duplexes as model systems
Wide-angle X-ray scattering (WAXS) profiles of DNA duplexes reveal peaks and troughs that reflect real-space, periodic structural features. We draw on information-theory-limited Fourier transforms, atomistic modeling, and residue-index correlation maps, to link the observed WAXS peaks to known structural features of DNA duplexes, introducing a new way to characterize nucleic acid structures.
A discussion of cryo-EM terminology as the outreach and number of PDB entries expand
Single-particle cryo-EM will soon equal the number of yearly entries in the Protein Data Bank from structures determined by X-ray crystallography. Considering the growing outreach of cryo-EM, it is timely to remind users of and define typical terms important for understanding the underlying fundamental physical concepts and key basics of single-particle cryo-EM and image processing, which are particularly relevant for the expanding cryo-EM community, including for newcomers and scientists joining from related fields.
Simple and robust aqueous sheet jets in vacuum
A novel vacuum-compatible liquid sheet jet nozzle, utilizing a second gas sheath, successfully generates stable aqueous films under 100 nm in thickness, overcoming previous freezing limitations in vacuum environments. This development simplifies operations and is demonstrated to be viable for high-repetition-rate X-ray scattering measurements at X-ray free-electron laser sources, broadening the applications for studying matter in solution.
Magnetic order in Tsai-type icosahedral quasicrystals and periodic approximants
This review summarizes recent experimental and theoretical advances in the magnetism of quasicrystals and their approximant crystals, and formulates three complementary and hierarchical design principles – valence electron concentration, crystal electric field-induced anisotropy and structural control of magnetic frustration – as primary tools for systematically tuning the magnetic ground states in these compounds.
Post-acquisition super resolution for cryo-electron microscopy
Post-acquisition super resolution (PASR) is a pre-processing step which can be utilized to exceed the resolution limit of already-acquired data if the limit is reached. It is designed to be as minimally invasive to all general single particle workflows as possible, allowing users to choose which suite they prefer.
| IUCrData IUCrData |
10a-Hydroxy-9-[2-(trifluoromethyl)phenyl]-3,4,5,6,7,8a,9,10a-octahydro-1H-xanthene-1,8(2H)-dione
The title compound, C20H19F3O4, crystallizes with two independent molecules with similar geometry. In both molecules the tetrahydropyran, cyclohexene and cyclohexane rings of the xanthene moiety adopt half-chair, half-boat and chair conformations, respectively.

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