forthcoming articles
The following articles are a selection of those recently accepted for publication in IUCr journals.
| Acta Crystallographica Section A Acta Crystallographica Section A FOUNDATIONS AND ADVANCES |
Surface-driven size scaling of the lattice parameter, Debye–Waller coefficient and microstrain in nanocrystals
This work develops three surface-driven nanoscale models for the diffraction-derived lattice parameter, Debye–Waller coefficient and microstrain, clarifying why their size dependences are not equally universal. Atomistic simulations and literature data show that lattice parameter trends depend strongly on capillarity, chemistry and defects, whereas the Debye–Waller coefficient and microstrain follow more robust surface-disorder and surface-stress gradient scaling laws.
| Acta Crystallographica Section B Acta Crystallographica Section B STRUCTURAL SCIENCE, CRYSTAL ENGINEERING AND MATERIALS |
| Acta Crystallographica Section C Acta Crystallographica Section C STRUCTURAL CHEMISTRY |
Structures of hexakis(antipyrine)lead(II) complexes: the first example of the stereochemically active and inactive 6s2 lone pair for one lead(II) complex
Single-crystal X-ray diffraction studies on [Pb(anti)6]X2 (anti = antopyrine; X = OTf− and ClO4−) compounds revealed for the triflate salt, the formation of two polymorphs with both holodirected regular octahedral geometry (eccentricity value ɛ = 0) and hemidirected symmetry of a ψ-pentagonal bipyramid (ɛ = 0.14). This work demonstrates, for the first time, that one lead(II) ion can exhibit both active or inactive 6s2 lone-pair character in a complex.
Water-bridged tetrameric supramolecular synthons in a novel tetrasubstituted imidazole–phenylalanine derivative synthesized via a Debus–Radziszewski reaction
A new imidazole derivative of phenylalanine was synthesized, the crystals displaying dimeric and/or tetrameric structures with unusual water double bridges.
Synthesis, crystal structure and green luminescence of a novel manganese(II)-based hybrid: bis[(tert-butoxycarbonyl)methyltriphenylphosphonium] tetrachloridomanganate(II)
A novel phosphonium-based manganese(II) hybrid crystal, (TBTP)2[MnCl4] [TBTP is (tert-butoxycarbonyl)methyltriphenylphosphonium], displays green luminescence with a millisecond-scale lifetime (515 nm, 2.83 ms), attributed to the Mn2+ 4T1→6A1 transition. Electronic structure analysis reveals a spatial separation of frontier orbitals, a structural feature that may aid in achieving the long-lived emission.
YK-4-250, a synthetic telmisartan–tempol conjugate: crystal structure of a stabilized free radical containing angiotensin AT1 receptor inhibitor
The first crystal structure of the telmisartan–tempol conjugate YK-4-250 is reported, revealing the intramolecular C–H⋯π interactions that stabilize the nitroxide radical while preserving the angiotensin AT1 receptor antagonist pharmacophore.
Peculiarity of atomic displacements in garnets discovered through a single-crystal X-ray diffraction study of the Na-bearing vanadate garnet series
Garnets where the mean-square displacements of the tetrahedral cations are largest in the direction of adjacent dodecahedral cations were discovered through structure refinements of the Na-bearing vanadate garnet series. This peculiar atomic displacement behaviour occurs when the dodecahedral sites are occupied by different cation species with different valences and largely different sizes.
| Acta Crystallographica Section D Acta Crystallographica Section D STRUCTURAL BIOLOGY |
Structural basis for T-cell receptor recognition of p53Y220D, a human cancer neoantigen
We determined crystal structures of TCR 4414 A bound to HLA-A2â"presented p53Y220D and of the corresponding unbound wild-type and mutant p53â"HLA-A2 ligands, revealing that the Y220D driver mutation reshapes the peptide and renders a normally cryptic self-epitope visible to T cells. These structures explain how TCR 4414 A achieves high specificity for mutant p53 by minimizing interactions with conserved peptide regions and instead focusing on the central Y220D mutation, providing a structural basis for mutation-specific TCR immunotherapy.
Single-crystal X-ray and in crystallo XANES studies resolve cobalt coordination in cobalamin and rule out radiation-induced ligand loss in human intrinsic factor
Ultra-high-resolution crystallography combined with in-crystallo Co K-edge XANES shows that cobalamin retains octahedral cobalt coordination in both oxidized and reduced states. These results rule out radiation-induced Coâ"CN cleavage as the cause of the missing axial ligand in intrinsic factorâ"bound cobalamin.
Structure and allostery in major facilitator superfamily symport mechanisms
Conformational dynamics in the melibiose/Na+ cotransporter MelB significantly influence the binding of the primary sugar substrate but have minimal effect on the co-substrate Na+. Na+ acts as an allosteric activator, increasing sugar affinity by stabilizing the inner barrier and constraining conformational flexibility.
Towards routine accurate electron-density studies of biological macromolecules
Here we describe the determination of the highest resolution structure in the PDB at 0.43 Å resolution. Electron density maps reveal extensive deformation electron density that is completely accounted for by performing transferable aspherical atom refinements using the DiSCaMB library in BUSTER.
Avoiding pitfalls when modelling ligands in macromolecular crystallography
Flawed protein-ligand X-ray structures can misdirect drug discovery based on PDB-deposited models. This review uses publicly available PDB examples to highlight potential pitfalls—from absent ligands to incorrect chemistry—and presents a practical validation approach to improve model reliability.
Room-temperature crystal structure of a metal-dependent W-formate dehydrogenase by serial synchrotron crystallography
We report a room-temperature serial synchrotron X-ray (SSX) crystallography structure analysis of the Nitratidesulfovibrio vulgaris formate dehydrogenase AB (NvFdhAB), an enzyme that reduces CO2 to formate.
Replacement soaking for human tankyrase 2 enables studies on substrate analogues and inhibitors
Replacement soaking, also known as cross-soaking, is a compelling method for solving complex structures in cases where traditional soaking and co-crystallization approaches fail. This method is demonstrated with human tankyrase 2, and new crystal structures of complexes with nanomolar inhibitors and an analogue of the substrate NAD+ are reported.
Advances in the nanostructure characterization of biological hydrogels formed by the prion-like domain of EARLY FLOWERING 3
In biological systems, hydrogels often arise through liquid–liquid phase separation, where biomolecular condensates can age into gel-like states. SAXS is a key technique to probe the molecular organization of these samples. This study introduces an in-vacuum Gel-Cell for SAXS-based structural analysis of a biologically derived hydrogel formed by the thermosensory prion-like domain of EARLY FLOWERING 3 and presents a three-component model to interpret the obtained data.
Influence of heme and pH on the oligomeric states of Brucella melitensis bacterioferritin
The oligomerization of B. melitensis bacterioferritin (BmBfr) was studied using X-ray crystallography, size-exclusion chromatography and thermal shift analysis. These techniques allowed the characterization of both apo and holo BmBfr, highlighting the impact of heme and pH on the oligomerization mechanism.
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| Acta Crystallographica Section E Acta Crystallographica Section E CRYSTALLOGRAPHIC COMMUNICATIONS |
| Acta Crystallographica Section F Acta Crystallographica Section F STRUCTURAL BIOLOGY COMMUNICATIONS |
Diverse DTPA-chelated lanthanides with relevance for nuclear medicine bound to an engineered lipocalin reveal conserved ligand geometry
Structural and binding studies of the engineered lipocalin CL31d towards the chelate complexes of 11 different lanthanide and main-group metal(III) ions, whose radioisotopes are useful for nuclear medicine, with a functionalized DTPA revealed a surprisingly broad tolerance towards varying ionic radii, thus enabling flexible radionuclide targeting strategies.
Crystal structure of the NKX2-1 homeodomain bound to a palindromic DNA recognition sequence
The crystal structure of the NKX2-1 homeodomain bound to DNA reveals the arrangement of two homeodomains on a palindromic NK2 recognition sequence and provides insight into disease-associated variants.
Structure of human aldehyde oxidase under tris(2-carboxyethyl)phosphine reducing conditions
We report and characterize a new crystallization condition in which human aldehyde oxidase 1 is pre-incubated with tris(2-carboxyethyl)phosphine, a sulfur-free reducing agent that does not inactivate the enzyme.
| Journal of Applied Crystallography Journal of Applied Crystallography |
Application of Electrostatic And Multi-layer Embedding in Hirshfeld Atom Refinements: A Cost-Effective Approach for Approximating Bulk Effects in Crystalline Environments
A new efficient embedding mechanism for molecule-in-a-crystal electron density calculations during Hirshfeld atom refinement is made available in NoSpherA2 and benchmarked.
Influence of solidification history and particle size on defect evolution in Al2024 alloy additive manufacturing powder
Findings are presented on the impact of solidification history on defect evolution in Al2024 alloy additive manufacturing powder. The results of this investigation suggest a trend of decreasing dislocation density in as-atomized samples as the particle size increases, with larger particles cooling more slowly, demonstrating the influence of particle size and solidification history on defect formation.
Tetragonal distortion of the multiferroic compound α-LiFe5O8 from first-principles calculations
This extensive study of first-principles calculations suggests the tetragonal space group P43212 for the multiferroic compound α-LiFe5O8, with a direct band gap of 2.050 eV for microstructure-free α-LiFe5O8 in the tetragonal space-group symmetry, smaller than that in its widely known cubic space group P4332. The tetragonal lattice distortion a > c is explained by relatively strong antiferromagnetic exchange interactions parallel to the c axis. Fe–O–Fe magnetic superexchange interactions, consistent with Fe 3d–O 2p hybridization, contribute to the tetragonal lattice distortion of α-LiFe5O8.
How a high rotational barrier enables packing-controlled stabilization of a conformational quasi-enantiomer
Variable-temperature NMR reveals a surprisingly high rotational barrier of ∼20 kcal mol−1[∼83.7 kJ mol−1] for (1,4-diacetoxy-3-methylnaphth-2-yl)diphenylphosphine oxide, stabilizing distinct conformers. This fourfold increase over theoretical predictions highlights the critical role of solvent-induced stabilization in maintaining conformational integrity in sterically congested systems.
Resolving ambiguity: an integrated approach to bending geometry identification in flexible organic crystals
This work introduces an integrated protocol that combines computational modeling, microscopy and directed diffraction to unambiguously identify the bending geometry in flexible organic crystals, overcoming the limitations of conventional methods. Applied to three model compounds, the protocol definitively resolved their active slip systems, providing a robust and generalizable framework essential for establishing reliable structure–property relationships in this field.
Gas-controlled capillary spinner for time-resolved powder X-ray diffraction under dynamic conditions
The newly developed gas-controlled capillary spinner enables continuous high-speed sample rotation during in situ powder X-ray diffraction under dynamic gas conditions. By improving the uniformity of the diffraction intensity, this system enables reliable millisecond time-resolved structural analysis for operando studies.
Separating the size distributions for interstitial and vacancy-type dislocation loops using integral X-ray diffuse scattering
A rigorous integral X-ray diffuse scattering (XRDS) method is presented for experimentally determining separate size distributions for interstitial and vacancy-type dislocation loops in irradiated single-crystalline materials. This new capability is facilitated by a numerical formulation for directly evaluating the integral XRDS intensities associated with individual defect clusters, and the technique is demonstrated by analyzing measurements of ion-irradiated tungsten that show distinct size distributions for the two loop types.
EQSANS-CLI: a natural-language agent-ready command-line tool for small-angle neutron scattering data reduction at EQ-SANS
EQSANS-CLI is a command-line tool for small-angle neutron scattering data reduction. It exposes the full reduction pipeline through two input surfaces, an interactive terminal that accepts both slash commands and natural language, and a headless JSON mode designed for external AI agents, both built on a shared command-handler layer.
Integrated analysis with iCM-SANS, SAXS and MD simulations for dynamics of multi-domain proteins
Segmental deuteration, combined with inverse contrast-matching small-angle neutron scattering (iCM-SANS) and small-angle X-ray scattering (SAXS), provides structural constraints that improve discrimination of conformation ensembles of multi-domain proteins derived from molecular dynamics (MD) simulations.
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| Journal of Synchrotron Radiation Journal of Synchrotron Radiation |
Single-shot hard X-ray spectrometer with uniform spatial and spectral response
We demonstrate a single-shot hard X-ray spectrometer based on small-angle scattering from glassy carbon that is insensitive to XFEL beam-dependent spatial and spectral variations. Comparison with established X-ray Thomson scattering diagnostics using stochastic correlation X-ray spectroscopy demonstrates full-bandwidth coverage with meV-scale spectral resolution, enabling reliable single-shot spectroscopic measurements.
GoniOwl: convolutional neural network-based sample state detection for collision prevention on synchrotron beamlines
GoniOwl, a lightweight CNN integrated into the EPICS control system, detects sample-pin presence from beamline camera images with>99% accuracy and fail-safe uncertainty handling, offering a transferable approach to vision-based collision prevention on synchrotron beamlines.
Monolithic integration of SiC diode detectors into scanning X-ray microscopy optical elements for in situ beam diagnostics
Silicon carbide detectors are monolithically integrated into order-sorting apertures and center-stops for in situ soft X-ray beam diagnostics in STXM. The functionalized components enable simultaneous monitoring of incident beam intensity and transverse position at sample-relevant locations without degrading optical performance.
Synchrotron-based multi-scale biological imaging inside biocontainment environments
Orion, the first BSL-4 synchrotron-based research complex, advances pathogen research by integrating cutting-edge, multi-scale imaging to enhance the understanding of infectious diseases and inform global health policies.
An efficient wave-optics framework for partially coherent pink X-ray beam simulation and analysis
This article proposes a new calculation method and framework for simulating pink X-ray beam, significantly improving computational efficiency. And by comparing with the experimental data of the beamline, the simulation method is consistent with the actual situation.
Focusing, collimation, and beam expansion of high-energy X-rays with diamond refractive lenses
The effectiveness and versatility of diamond refractive optics for high-energy X-rays (> 40 keV) is presented in applications to focusing, collimation, and beam expansion, along with design and implementation details.
ASCANIO: a backscattering X-ray multichannel spectrometer for synchrotron applications
This paper presents the development and commissioning of ASCANIO, an innovative multichannel backscattering X-ray spectrometer, including extensive testing on a synchrotron beamline, with highlights of the main results achieved.
Virtual commissioning of the Korea-4GSR Hard X-ray Nanoprobe beamline with multilingual natural language control
A pre-installation virtual commissioning platform for the Korea-4GSR ID10 hard X-ray nanoprobe couples browser-based Monte Carlo ray tracing, EPICS/Bluesky control and a multilingual natural-language agent (98.2% accuracy in Korean, English and Japanese) under a zero-change hardware transition principle, producing commissioning design inputs ahead of 2029 first light.
Time-resolved synchrotron X-ray total scattering of alkali-activated materials with high and low calcium contents
Synchrotron in situ high-energy X-ray total scattering/pair distribution function (PDF) quantifies the time-resolved structural evolution of high and low calcium alkali-activated binders, with PDF peak evolution tracking reaction progress and correlating with calorimetry (R2 > 0.97). The measurements resolve distinct medium-range ordering in the primary gels, demonstrating the sensitivity of synchrotron PDF for probing disordered cementitious phases.
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The use of machine learning interatomic potentials for the verification of experimental molecular crystal structures
Machine learning interatomic potentials (MLIPs) offer a significantly faster alternative to density functional theory for theoretical crystal structure calculations with comparable accuracy. Geometry-optimized structures generated using the Universal Models for Atoms MLIP, trained on the Open Molecular Crystals 2025 dataset, were used to verify 216 919 selected structures from the Cambridge Structural Database with the aim of detecting issues in both the interpretation of the original X-ray experiments and the performance of the used MLIP.
Considerations for FAIR data catalogs from DAPHNE4NFDI
Metadata catalogs are essential for implementing FAIR data principles in photon and neutron (PaN) science, enabling experimental data to become findable, accessible, and reusable. This work provides an analysis of current catalog systems in the PaN field and offers practical recommendations to advance interoperability and build a federated, FAIR-compliant data infrastructure.
Magnetic order in Tsai-type icosahedral quasicrystals and periodic approximants
This review summarizes recent experimental and theoretical advances in the magnetism of quasicrystals and their approximant crystals, and formulates two hierarchical design principles – valence electron concentration and crystal electric field-induced anisotropy – as primary tools for systematically tuning the magnetic ground states in these compounds.
Droplet-on-demand tape drive and X-ray emission spectroscopy prototypes for time-resolved serial crystallography on VMXi at Diamond Light Source
We describe proof-of-concept experiments towards correlated serial synchrotron crystallography (SSX) and X-ray emission spectroscopy (XES) from microcrystals on a microfocus synchrotron beamline. A droplet-on-demand tape drive system delivers microcrystals to the beam within well separated droplets with a volume of hundreds of picolitres, while XES allows validation of the redox states of metals within protein crystals.
Post-acquisition super resolution for cryo-electron microscopy
Post-acquisition super resolution (PASR) is a pre-processing step which can be utilized to exceed the resolution limit of already-acquired data if the limit is reached. It is designed to be as minimally invasive to all general single particle workflows as possible, allowing users to choose which suite they prefer.
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