forthcoming articles

The following articles are a selection of those recently accepted for publication in IUCr journals.

Journal logoActa Crystallographica Section A
Acta Crystallographica
Section A
FOUNDATIONS AND ADVANCES
Accepted 28 January 2025

Refuting `a new theory for X-ray diffraction' – a reciprocal-space approach

Journal logoActa Crystallographica Section B
Acta Crystallographica
Section B
STRUCTURAL SCIENCE, CRYSTAL ENGINEERING AND MATERIALS

Accepted 22 February 2025

Strain distribution in GaN/AlN superlattices grown on AlN/sapphire templates: comparison of X-ray diffraction and photoluminescence studies

Strain in GaN/AlN SLs decreases with increasing well/barrier thickness. Interface quality impacts SL properties, with optimal results at 3 nm. The quantum-confined Stark effect causes red-shift in PL spectra, confirmed by DFT calculations. Understanding strain and defects crucial for GaN/AlN SL device design.

Accepted 22 February 2025

Looking at high-pressure electrides through the lens of quantum crystallography: the case of simple cubic calcium

In our study, we used theoretical quantum crystallography (QCr) methods to analyze the electron density and bonding nature of Ca-sc under extreme pressures, up to 40 GPa. Through these techniques, we have studied the electronic structure through the pressure induced electronic transitions and when the multi-center bonding (MCB) formation characteristics emerge in this HPE, leveraging the chemical information that can be extracted from the topological analysis of the electron density and the indirect measurements of atomic electronegativities. These findings demonstrate the capability of QCr to reveal the complex bonding and electronic structures of HPEs, which have so far largely been studied through theoretical models alone. This work highlights the broader applicability of QCr in HPE research, addressing the challenges in experimentally validating these phases due to the difficulty of making direct observations under high-pressure conditions. The combination of quantum computational and crystallographic data, facilitated by QCr, could bridge the gap between theoretical predictions and experimental validation, enabling a more comprehensive understanding of materials in extreme environments. [Please reduce to 1-2 sentences]

Accepted 4 February 2025

Qu­antitative crystal structure analysis in tri­fluoro­methyl- and cyano-substituted N-phenyl­benzamides


Accepted 28 January 2025

Intrusion of quantum crystallography into classical lands

One hundred years after the quantum theory established position and momentum as incompatible quantities, quantum crystallography offers a way to visualize electron phase space behaviour in crystals.

Accepted 28 January 2025

A new crystal phase of calcium stannate CaSn2O4(OH)2 and its physico-chemical properties

At 623 K, the thermovapour treatment of calcium and tin oxides leads to the formation of the previously unknown CaSn2O4(OH)2 lamellar crystals. This phase is stable up to 973 K and has high catalytic activity and selectivity to C6+ products in the aldol condensation of acetone.

Accepted 23 January 2025

Disorder- and magnetism-driven structural changes in Sm2Mn1–xGa6–yGey

High-resolution single-crystal X-ray diffraction experiments were performed for Sm2Mn1–xGa6–yGey over a wide temperature range (180–430 K). The experiments revealed significant strucural changes that are caused by structural disorder and magnetic ordering.
Journal logoActa Crystallographica Section C
Acta Crystallographica
Section C
STRUCTURAL CHEMISTRY

Accepted 3 March 2025

Halogen-substituted benzyl­amine crown ether inclusion com­plexes

Four novel benzyl­amine-based crown ether inclusion com­plexes have been synthesized, [(4-XBA)(18-crown-6)][DMSA] [X = F, Cl, Br and I; BA= benzyl­amine; DMSA = di(methane­sulfony)amidate]. The effects of the different halogen atoms on the stacking within the crystals of the com­plexes are described.

Accepted 28 February 2025

Structural and supra­molecular insights into crystalline multicom­ponent systems of 2,4-di­amino-6-phenyl-1,3,5-tri­azine with various carb­oxy­lic acids

The supra­molecular inter­actions and Hirshfeld surfaces of three multicom­ponent systems, namely, 2,4-di­amino-6-phenyl-1,3,5-tri­a­z­ine–nicotinic acid, 2,4-di­amino-6-phenyl-1,3,5-triazin-1-ium hy­dro­gen malonate and 2,4-di­amino-6-phenyl-1,3,5-triazin-1-ium hy­dro­gen (+)-dibenzoyl-D-tartarate have been investigated.

Accepted 27 February 2025

7-(4-Chloro­phen­yl)-1-hy­droxy-5-methyl­pyrido[3,4-d]pyridazin-4(3H)-one: synthesis, solvatomorphism, in vitro anti-inflammatory and cytotoxic activity studies and in silico analysis


Accepted 27 February 2025

Mixed cocrystal approach influences the yield for a [2+2] cyclo­addition reaction within a halogen-bonded organic solid

The ability to control the yield for a [2+2] cyclo­addition photoreaction by using a mixed cocrystal approach is reported. The two isosteric halogen-bond donors allow for the formation of the cocrystal solid solution and as a result influences the extent of the photoreaction based upon their initial molar ratios.

Accepted 23 February 2025

Single-crystal structure of the spicy capsaicin

The crystal structure of capsaicin, the natural product responsible for the pungency of chilli peppers, was determined by low-temperature single-crystal X-ray diffraction.

Accepted 6 February 2025

Racemic mimics. Part 1. Nickel coordination com­pounds

There are very few examples of crystallographically well-documented racemic mimics. Therefore, this inter­esting class of crystalline mol­ecules, potentially having useful biological uses, is today one of those scientific orphans largely ignored in the crystallographic realm. Some suggestions are provided for searching for potential cases of such a crystallization mode using information already in print.
Journal logoActa Crystallographica Section D
Acta Crystallographica
Section D
STRUCTURAL BIOLOGY

Accepted 3 March 2025

InstaMap: Instant-NGP for cryo-EM density maps

Cryo-EM density map inference, with fixed pose and CTF, using a multi-resolution hash-encoding framework called instant-NGP. Extension to heterogeneity inference by bending space with a per-image vector field.

Accepted 27 February 2025

Duplicate entries in the Protein Data Bank: how to detect and handle them

A global analysis of protein crystal structures in the Protein Data Bank (PDB) reveals many pairs with (nearly) identical main-chain coordinates. Such cases are identified and analyzed, leading to a proposal about how the PDB could ameliorate the problem.
Journal logoActa Crystallographica Section E
Acta Crystallographica
Section E
CRYSTALLOGRAPHIC COMMUNICATIONS

Accepted 5 March 2025

Synthesis and crystal structure of 5-{(E)-[(1H-indol-3-ylformamido)­imino]­meth­yl}-2-meth­oxy­phenyl propane-1-sulfonate

The crystal structure is characterized by a three-dimensional hydrogen-bonding network. Chains formed through N—H⋯O contacts are linked by additional inter­molecular bonds to complete the structure.

Accepted 4 March 2025

Synthesis and structure of tris­(2-methyl-1H-imidazol-3-ium) 5-carb­oxy­benzene-1,3-di­carboxyl­ate 3,5-di­carb­oxy­benzoate

The structure of a tris­(2-methyl-1H-imidazol-3-ium) di­hydrogenetrimesate mono­hydrogentrimesate2− compound was determined by single-crystal X-ray diffraction. The compound is mixture of protonated and deprotonated mol­ecules.

Accepted 4 March 2025

Crystal structures and Hirshfeld surface analyses of methyl (2Z)-(4-bromo­phen­yl)[2-(4-methyl­phen­yl)hydrazinyl­idene]acetate, methyl (2Z)-(4-bromophen­yl)[2-(3,5-di­methyl­phen­yl)hydrazinyl­idene]acetate, methyl (2Z)-[2-(4-meth­oxy­phen­yl)hydrazinyl­idene](3-nitro­phen­yl)acetate, methyl (2E)-(4-chloro-phen­yl)(2-phenyl­hydrazinyl­idene)acetate and methyl (2Z)-[2-(4-bromo­phen­yl)hydrazinyl­idene](4-chloro­phen­yl)acetate

Mol­ecules (1), (2), (3) and (5) adopt a Z configuration with respect to the central C=N bond, while (4) adopts an E configuration.

Accepted 28 February 2025

Polymorphism and Hirshfeld surface analysis of tetra­oxa[2]perfluoro­arene[2]triazine

Tetra­oxa[2]perfluoro­arene[2]triazine (C20H6F8N6O6), composed of two tetra­fluoro­phenyl­ene and two triazine moieties connected by four oxygen atoms, was crystallized via slow evaporation of a di­chloro­methane solution, yielding two polymorphs with block- and plate-shaped crystals.

Accepted 11 February 2025

Crystal structure and Hirshfeld surface analyses, inter­molecular inter­action energies and energy frameworks of methyl 6-amino-5-cyano-2-(2-meth­oxy-2-oxoeth­yl)-4-(4-nitro­phen­yl)-4H-pyran-3-carboxyl­ate

The title compound contains pyran and phenyl rings, with the pyran ring in a flattened-boat conformation. In the crystal, inter­molecular N—H⋯N hydrogen bonds link the mol­ecules into centrosymmetric dimers, forming R22(12) ring motifs, which are linked by N—H⋯O hydrogen bonds into a three-dimensional architecture. In addition to van der Waals inter­actions and N—H⋯N and N—H⋯O hydrogen bonds, halogen bonds, tetrel bonds and pnictogen bonds also play an important role in the cohesion of the crystal structure.
Journal logoActa Crystallographica Section F
Acta Crystallographica
Section F
STRUCTURAL BIOLOGY COMMUNICATIONS

Accepted 28 February 2025

Crystal structure of cyclophilin 37 from Arabidopsis thaliana

The purification, crystallization, and structure at 1.95 Å resolution of cyclophilin 37 (CYP37) from Arabidopsis thaliana (AtCYP37) is reported. The structure, which is similar to AsCYPA and AtCYP38, is crucial for understanding how AtCYP37 interacts with the PetA subunit in Cyt b6f, which is involved in the photoprotective mechanism of plants under high light conditions.

Accepted 27 February 2025

Structures of Legionella pneumophila serogroup 1 peptide de­formylase bound to nickel(II) and actinonin

Peptide deformylases (PDFs) have been of interest as viable drug targets for the development of new antimicrobials. Two crystal structures of PDF from Legionella pneumophila serogroup 1, the causative agent of Legionnaires' disease, bound to Ni2+ or actinonin and Zn2+, were solved to 1.5 and 1.65 Å resolution, respectively.

Accepted 19 February 2025

High-throughput protein crystallography to empower natural product-based drug discovery

High-throughput protein crystallography is used at the heart of a pipeline to accelerate the discovery of bioactive natural products by capturing these hits with protein crystals directly from unpurified biota samples.

Accepted 19 February 2025

Crystal structure of the S-adenosylme­thionine-dependent mycolic acid synthase UmaA from Mycobacterium tuberculosis

The crystal structure of UmaA from M. tuberculosis was solved to 1.95 Å resolution in space group P3221.
Journal logoJournal of Applied Crystallography Journal of Applied
Crystallography

Accepted 24 February 2025

Optimal st-PMMA/C60 helical inclusion complexes via tunable energy landscapes for the application of an Ag SERS-active substrate

This study tunes the energy landscape of the st-PMMA/C60/toluene complex system and finds the efficient pathway to form the thermodynamically favored st-PMMA/C60 complex by temperature modulation. This st-PMMA/C60 complex architecture further acts as a photoreduction site for yielding the Ag SERS-active substrate for advanced chemical sensing applications.

Accepted 21 February 2025

Solvent annealing-induced microphase separation in polyether polyurethane: A small-angle X-ray scattering study

Small-angle X-ray scattering technique was applied to polyether polyurethane (PU) to investigate the effects of solvent vapor annealing on the microphase separation. Among the solvents studied, methyl ethyl ketone induced the greatest degree of phase separation in PU compared with the thermally annealed state.

Accepted 20 February 2025

Upgrade of the KWS-2 high-intensity/extended Q-range SANS diffractometer of JCNS for soft-matter and biophysics: in situ SEC, controlled in situ RH/T variation and WANS detection

Upgrades at the KWS-2 SANS diffractometer for an optimal sample quality for biological systems (in-beam SEC complementarity), controlled humidity and temperature on ionic conductive samples and biological membranes and diffraction capability (WANS) are reported.

Accepted 18 February 2025

Complete online database of maximal subgroups of subperiodic groups at the Bilbao Crystallographic Server

The complete maximal subgroups of subperiodic groups database of the Bilbao Crystallographic Server is presented. The program MAXSUB gives online access to all maximal non-isotypic as well as all maximal isotypic subgroups of indices up to 9, and to the series of maximal isotypic subgroups of subperiodic groups.

Accepted 16 February 2025

Texture tomography with high angular resolution utilizing sparsity

This article reports non-destructive 3D texture mapping of a wide range of polycrystalline materials using synchrotron X-rays and utilizing the sparsity of the reconstructed texture.

Accepted 14 February 2025

Rietveld refinement and NMR crystallographic investigations of multicomponent crystals containing alkali metal chlorides and urea

Three multicomponent crystals of the form MCl:Urea·xH2O (M = Li, Na, Cs) have been prepared with novel mechanochemical methods, and their crystal structures determined using an NMR crystallography-guided Rietveld refinement that features the combined use of multinuclear solid-state NMR of quadrupolar nuclei, plane-wave density functional theory calculations and synchrotron powder X-ray diffraction data.

Accepted 14 February 2025

A critical step toward far-field laboratory diffraction contrast tomography in Laue focusing geometry

A far-field laboratory diffraction contrast tomography (FF-LabDCT) technique is established and verified using conventional near-field LabDCT. Future directions to enhance FF-LabDCT as a versatile tool are outlined.

Accepted 13 February 2025

Chemical units of binary solid-solution alloys directly derived from short-range-order parameters

The present work provides a simple method to obtain the chemical unit of a solid-solution alloy directly using Cowley's short-range-order parameters α1 and α2.

Accepted 11 February 2025

Probing the out-of-equilibrium dynamics of driven colloids by X-ray photon correlation spectroscopy

This article presents an application of X-ray photon correlation spectroscopy (XPCS) to probe the out-of-equilibrium dynamics in a driven colloidal system. XPCS enables the investigation of direction-dependent non-equilibrium dynamics and the gradual return of the suspension to equilibrium Brownian behaviour. The influence of such transient non-equilibrium dynamics needs to be taken into consideration when dynamic scattering methods are used for micrometre-range particle measurement.

Accepted 2 February 2025

Computing virtual dark-field X-ray microscopy images of complex discrete dislocation structures from large-scale molecular dynamics simulations

A scalable forward model is developed to calculate virtual dark-field X-ray microscopy (DFXM) images of complex dislocation structures predicted by atomistic simulations, demonstrating the potential of DFXM to resolve features from dislocation multiplication and microstructural evolution.

more ...
Journal logoJournal of Synchrotron Radiation Journal of
Synchrotron Radiation

Accepted 23 February 2025

High-resolution in situ characterization of laser powder bed fusion via transmission X-ray microscopy at X-ray free-electron lasers

We describe the first implementation of an operando transmission X-ray microscopy to study laser melting at X-ray free-electron lasers. Our instrument used a novel pump-probe-probe scheme to image down to 940 nm spatial resolution with integration times <100 fs and up to 0.48 GHz frame rates to study the rapid dynamics and small-scale features in laser additive manufacturing.

Accepted 21 February 2025

Structural dependency of polymer dynamics by means of small-angle X-ray photon correlation spectroscopy and wide-angle X-ray scattering on the D2AM beamline

The BM02/D2AM beamline at the ESRF is shown to be suitable to perform X-ray Photon Correlation Spectroscopy (XPCS) experiments with a flux that prevents sample's irradiation effects, features particularly suitable for polymer-based materials.

Accepted 19 February 2025

Air artifact suppression in phase contrast micro-CT using conditional generative adversarial networks


Accepted 14 February 2025

A high-energy Laue X-ray emission spectrometer at the FXE instrument at the European XFEL

A new X-ray spectrometer for high photon energies based on Laue analyzer crystals is presented. Its performance in terms of energy resolution and efficiency is discussed. Niobium Kα and Kβ emission data collected with this Laue spectrometer are given.

Accepted 14 February 2025

Advances in macromolecular crystallography at the Photon Factory: automation from crystallization to structural determination

The Structural Biology Research Center at the High Energy Accelerator Research Organization has developed advanced systems for macromolecular crystallography, including an automated crystallization screening system, a long-wavelength crystallography beamline and an automated data-collection system.

Accepted 11 February 2025

The High Energy diffraction beamline at the Canadian Light Source

The performance of the High Energy beamline of the Brockhouse Sector of the Canadian Light Source is described in terms of flux, bandwidth, divergence, and focus of the beam. Its uses include high energy penetrating diffraction, high pressure diffraction, and pair distribution function studies.

Accepted 8 February 2025

The OÆSE endstation at BESSY II: operando X-ray absorption spectroscopy for energy materials

The OÆSE endstation on EMIL at the BESSY II synchrotron facility in Berlin allows real-time investigation of energy materials through operando X-ray absorption spectroscopy. The possibility to use soft, tender and hard X-rays combined with versatile operando sample environments enables the study of a wide range of energy materials under relevant operation conditions.

Accepted 6 February 2025

The macromolecular crystallography beamlines of the Helmholtz-Zentrum Berlin at the BESSY II storage ring: history, current status and future directions

The history, current state and future directions of the three MX beamlines BL14.1, BL14.2 and BL14.3 of the Helmholtz-Zentrum Berlin at the BESSY II electron storage ring are described.

Accepted 5 February 2025

Macromolecular crystallography at Elettra: current and future perspectives

The XRD2 beamline at Elettra-Sincrotrone Trieste has been in operation since 2018 and is dedicated to macromolecular crystallography for both academic and industrial research, a role partially fulfilled, before 2018, by XRD1, a general-purpose diffraction beamline. With the upcoming Elettra 2.0 upgrade, based on a six-bend enhanced achromat lattice, the synchrotron will offer a brighter, more powerful beam to address evolving challenges in crystallography.
IUCrJ
Accepted 5 March 2025

Peptide bonds revisited

High resolution crystal structures reveal that peptide bonds in α-helices exhibit a slightly more pronounced enol-like character than those in β-strands. This can go as far as peptide oxygen atoms in protein structures being protonated.

Accepted 24 February 2025

Code dependence of calculated crystalline electron densities. Possible lessons for quantum crystallography

The development of Quantum Crystallography rests on the availability of reliable theoretical electron densities. This work demonstrates a non-negligible code-dependence of these densities and warns about their blind use.

Accepted 19 February 2025

Prospects for coherent X-ray diffraction imaging at fourth-generation synchrotron sources

A review of plane-wave coherent X-ray diffraction imaging in small-angle X-ray scattering geometry is presented, together with a discussion of the new opportunities offered by fourth-generation synchrotron sources.

Accepted 18 February 2025

Small but mighty: the power of microcrystals in structural biology

Developments in macromolecular crystallography now allow the use of microcrystals for structural analysis through advanced beamlines and techniques such as microcrystal electron diffraction and room-temperature crystallography. This review addresses methods of matching microcrystal preparation and sample delivery. The use of microcrystals enhances the possibilities in fields such as time-resolved crystallography.

Accepted 17 February 2025

The origin of synthons and supramolecular motifs: beyond atoms and functional groups

This study establishes that hydrogen-, halogen- and chalcogen-bonding intermolecular and non-covalent intramolecular interactions are driven by a face-to-face orientation of electrophilic (charge-depleted) and nucleophilic (charge-concentrated) regions, being at the origin of the specific geometries found in synthons and supramolecular motifs.
Journal logoIUCrData
IUCrData

Accepted 28 February 2025

Bis[(2-meth­oxy­phen­yl)di­phenyl­phosphane-κP](nitrito-κ2O,O′)silver(I)

The synthesis and single-crystal structure description of a silver(I) diphenyl-2-meth­oxy­phenyl­phosphine nitrite complex is described.

Accepted 5 February 2025

Chlorido­{2-[(4-chloro­phen­yl)imino­meth­yl]pyridine-κ2N,N′}(η6-toluene)­ruthenium(II) hexa­fluoridophosphate

The crystal structure of an arene ruthenium(II) complex bearing a bidentate Schiff base ligand is reported.


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