forthcoming articles
The following articles are a selection of those recently accepted for publication in IUCr journals.
| Acta Crystallographica Section A Acta Crystallographica Section A FOUNDATIONS AND ADVANCES |
Dynamics and entropy of dynamical systems arising from two-dimensional random substitutions
We study the dynamics and entropy of dynamical systems arising from two-dimensional random substitutions, exhibiting both local disorder and global order, as shown by positive topological entropy and the presence of non-trivial pure-point components in the diffraction spectrum.
| Acta Crystallographica Section B Acta Crystallographica Section B STRUCTURAL SCIENCE, CRYSTAL ENGINEERING AND MATERIALS |
Crystal structure of a new selenite-sulfate compound Ag4Cu(SeO3)2(SO4)
A new selenite-sulfate compound Ag4Cu(SeO3)2(SO4), was successfully obtained through a conventional hydrothermal method. The compound exhibits layered structures formed by the arrangement of 1D chains in the bc plane.
Crystal structure of eveslogite revealed by electron diffraction techniques: a titanosilicate mineral with structurally and compositionally distinct nanoscopic tubular units
The study of the mineral eveslogite reveals a unique structure based upon two types of nanoscopic heterosilicate-based tubules.
| Acta Crystallographica Section C Acta Crystallographica Section C STRUCTURAL CHEMISTRY |
Crystal structure, intermolecular interactions, Hirshfeld surface analysis, theoretical studies and biological evaluation of (E)-5-(benzyloxy)-2-{[(2,5-dimethoxyphenyl)imino]methyl}phenol, a new Schiff base
The title Schiff base compound was synthesized by the reaction of 4-(benzyloxy)-2-hydroxybenzaldehyde and 2,4-dimethoxyaniline in a 1:1 ratio. In the crystal, there are two independent molecules in the asymmetric unit and both molecules were refined as having a mixture of the imino–phenol and iminio–phenolate tautomeric forms. The compound exhibits significant inhibition properties.
Synthesis of a phenazine radical anion complex: structural and spectroscopic analysis of spin delocalization
The crystallographic bond metrics of a 1:1 cocrystal containing a potassium–phenazine adduct and a phenazine-bridged homobimetallic zinc(II) complex indicate that the bimetallic zinc component is singly reduced. However, the solution-state electron paramagnetic resonance of this system indicates two distinct phenazine radical environments.
| Acta Crystallographica Section D Acta Crystallographica Section D STRUCTURAL BIOLOGY |
A short history of Auto-Rickshaw
Auto-Rickshaw is an example of practical, decision-driven automated macromolecular structure determination from crystallographic diffraction data. This review traces its development at the EMBL Hamburg/DESY beamline environment, where rapid validation of diffraction experiments was essential, through its expansion into a general platform for automated structure solution and its continuing relevance to beamline automation.
Radiation damage in serial femtosecond crystallography studied in hemoglobin
Protein structures determined by serial femtosecond crystallography are indistinguishable when measured with 3 and 10 fs X-ray pulses, indicating no structural benefit from further shortening the pulse duration under the studied conditions.
Single-crystal X-ray and in crystallo XANES studies resolve cobalt coordination in cobalamin and rule out radiation-induced ligand loss in human intrinsic factor
High-resolution crystallography combined with in crystallo Co K-edge XANES shows that cobalamin retains octahedral cobalt coordination in both oxidized and reduced states. These results rule out radiation-induced Co–CN cleavage as the cause of the missing axial ligand in intrinsic factor-bound cobalamin.
| Acta Crystallographica Section E Acta Crystallographica Section E CRYSTALLOGRAPHIC COMMUNICATIONS |
2,2′-(Ethane-1,2-diyl)bis[3-(pyridin-2-yl)imidazo[1,5-a]pyridin-2-ium] dichloride hexahydrate
The title compound crystallizes as a two-component twin in space group P21/n with Z′ = 1, exhibiting hydrogen-bonding corrugated layers of chloride ions and water molecules that run approximately along the diagonal plane of the cell between columns of the stacked dications.
Synthesis and crystal structure of N-benzyl-5,6-epoxy-7-oxabicyclo[2.2.1]heptane-2,3-dicarboximide
The crystal structure of the title compound demonstrates a tetracyclic organic compound with defined stereochemistry. In the solid state, the compound organizes in a racemic chiral fashion with alternating N-benzyl units.
Byproduct identification: crystal structure of potassium 2-ethoxy-2-oxoacetate
The crystal structure of the title salt is made up from a potassium cation and a disordered 2-ethoxy-2-oxoacetate anion. The packing interactions are through electrostatic interactions between the potassium ions and the oxygen atoms.
Crystal structure of the pharmaceutical impurity 2-(4-chlorobenzoyl)pyridine
The title compound is a pharmaceutical impurity and possible intermediate in the synthesis of carbinoxamine. The aromatic rings of the molecule twist relative to one another resulting in an interplanar angle of 38.1 (1)°. In the extended structure, the molecules are packed into rippled sheets with offset face-to-face stacking of each aromatic ring with the equivalent ring in the neighboring molecule.
Crystal structure and Hirshfeld surface analysis of 2,5-dimethyl-1H-benzo[d]imidazole
The molecule exhibits whole-molecule disorder in a 0.849 (4)/0.151 (4) ratio. The bicyclic portion is planar. In the crystal, a layer structure is generated by N—H⋯N hydrogen bonds and C—H⋯π(ring) interactions.
Synthesis, crystal structure and Hirshfeld surface analysis of (Z)-2-({amino[6-phenyl-3-(4-methylphenyl)-1,2,4-triazin-5-yl]methylidene}amino)-6-methoxybenzo[d]thiazole-4,7-diyl diacetate
In the crystal, molecules are connected by intermolecular N—H⋯O interactions and π–π interactions [centroid–to-centroid distance = 3.8200 (12) Å], forming ribbons along the b-axis direction.
Crystal structure of a hydrate of 1,3,5-substituted 2,4,6-trialkylbenzene bearing hydroxymethyl and pyridinylamino groups
In the asymmetric unit, two molecules of the 1,3,5-substituted 2,4,6-trialkylbenzene and three water molecules are connected by hydrogen bonds, forming well-defined complexes that constitute the smallest supramolecular entities.
Synthesis and structure of dichlorido{(E)-4-methyl-N′-[1-(pyridin-2-yl)ethylidene]benzohydrazide}zinc(II)
The ligand in the title complex was obtained by a condensation reaction between p-tolyl hydrazide and 2-acetylpyridine. The ligand molecule bonds to the metal ion in a tridentate manner via its imino nitrogen atom, its carbonyl oxygen atom, and the nitrogen atom of the pyridine ring. In the extended structure, pairwise N—H⋯Cl hydrogen bonds generate inversion dimers and very weak C—H⋯Cl interactions link the dimers into sheets.
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| Acta Crystallographica Section F Acta Crystallographica Section F STRUCTURAL BIOLOGY COMMUNICATIONS |
Structure of recombinant Thermoascus aurantiacus xylanase TaXyn10 with an authentic N-terminal pyroglutamate
The high-resolution structure of the Thermoascus aurantiacus xylanase TaXyn10 expressed in Escherichia coli shows that recombinant production combined with split-intein-based purification recovers the native fold of TaXyn10 and permits formation of an N-terminal pyroglutamate. These results demonstrate that this approach can enable recombinant proteins to adopt their native mature state in E. coli, including physiologically relevant post-translational modifications such as N-terminal pyroglutamate formation.
Sulfate-compatible density marks an intratrimeric junction in the Escherichia coli dihydrolipoamide succinyltransferase catalytic domain
The F432 crystal structure of the catalytic domain of E. coli dihydrolipoamide succinyltransferase identifies a sulfate-compatible intratrimeric junction associated with Lys196 and α1-helix positioning near the active-site pocket.
Crystal structures of the sweet-tasting protein honey truffle active component from Mattirolomyces terfezioides
The crystal structures of the sweet-tasting protein honey truffle active component are reported to resolutions ranging from 1.23 to 1.70 Å. The structures correlate well with a previously reported NMR solution-phase protein structure and reveal side-chain configurations that are critical in binding of the protein to the human sweet taste receptor that are also involved in ligand interactions in solution and self-association.
Structural insights into a putative BLF1-like deamidase from Methylomonas sp. Kb3
The crystal structure of a putative BLF1-like deamidase from Methylomonas sp. Kb3 reveals conservation of the catalytic cysteine–histidine dyad despite extensive sequence variation. These findings expand the diversity of BLF1-like deamidases and provide a structural framework for understanding their evolution and potential functions.
| Journal of Applied Crystallography Journal of Applied Crystallography |
Elliptical neutron-focusing supermirrors with Ni–P-plated Al–Si alloy substrates for multi-incident-angle neutron reflectometry
Multi-incident-angle neutron reflectometry is realized using elliptical metallic supermirrors for dual-beam focusing. This approach presents new opportunities for efficient interface analysis.
PolymCrystRefine: A Workflow for Diffraction Analysis of Polymer Crystals
An automated workflow, PolymCrystRefine, has been developed for polymer crystal structure refinement from fiber diffraction data, combining joint force field and intensity-gradient optimization, an ROI-based data exploitation scheme, and a genetic algorithm guided by fiber-specific constraints.
Commissioning of a versatile grazing-incidence platform at a very small angle neutron scattering instrument for investigating nano-to-microscopic colloidal assembly
A grazing-incidence platform has been commissioned at the very small angle neutron scattering instrument of the China Spallation Neutron Source, with accessible length scales covering three orders of magnitude. The functions of this platform are validated by its ability to distinguish the in-plane assembly patterns of colloidal thin films fabricated by different coating techniques, and composed of structures with sizes ranging from 100 nm to several micrometres.
Determination of partial atomic charges from single-crystal X-ray diffraction by refinement of occupancy of spherical atoms
Experimental measurement of partial atomic charge using standard crystallographic data is accessible to a wide range of experimental practitioners of single-crystal X-ray diffraction without the need for high-angle data or specialized software.
Development of advanced borosilicate glass coating for surface modification of neutron experimental tools
Sodium-free borosilicate glass thin films synthesized from diphenylborosiloxane exhibit enhanced hydrophobicity, offering a promising solution for durable surface modification of neutron experimental tools.
Jungfraujoch: 38 GB s−1 real-time serial crystallography – data acquisition and live indexing feedback
Jungfraujoch is a single-node FPGA–GPU server that enables 38 GB s−1 real-time crystallography data acquisition using the PSI JUNGFRAU 9M detector at 2 kHz, with simultaneous on-the-fly processing, spot finding and indexing, and optional adaptive data reduction during continuous data streaming.
Deterministic segmentation of grains in dense Laue microdiffraction datasets
This work introduces a deterministic methodology for segmenting individual grain contributions from complex high-density Laue microdiffraction datasets by leveraging spatial correlations and clustering of peak appearance maps.
Determination of water permeability in stress-free lipid membranes through time-resolved SANS
Time-resolved small-angle neutron scattering with rapid contrast variation enables direct non-invasive measurement of water permeation kinetics and membrane structure under iso-osmotic conditions for lipid membranes.
The effect of Nb and O on the martensitic transformation in Ti–Nb–O alloys
Using a newly developed 2D X-ray diffraction orientation simulation approach to isolate overlapping martensitic reflections, this study demonstrates that niobium controls continuous lattice symmetry evolution, whereas interstitial oxygen induces localized strain fields that nonlinearly govern the structural competition between α″ martensite and the athermal ω phase.
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| Journal of Synchrotron Radiation Journal of Synchrotron Radiation |
High-resolution monochromator for the 8.41 keV 169Tm nuclear resonance
A high-resolution monochromator for the 8.41 keV 169Tm nuclear resonance is presented enabling nuclear resonant scattering on Tm compounds at PETRA III beamline P01. Hyperfine parameters and phonon densities of states of metallic Tm and Tm2O3 are studied.
XAS3DLive: an interactive X-ray absorption spectroscopy simulation/fitting platform for atomic 3D structure characterization
An interactive X-ray absorption spectroscopy (XAS) simulation/fitting platform for atomic 3D structure characterization integrates machine-learning-driven XAS simulation, 3D structure visualization and editing, and experimental XAS fitting into one unity for fast and user-friendly analysis.
Mirror alignment by particle swarm optimization for synchrotron radiation beamlines
A particle swarm optimization–based automated two-mirror alignment method was developed to restore high-flux beams in approximately 5 min, and its 15-month deployment demonstrated its robustness and reliability.
MIR2-Toolkit: a Python program for multiple-image radiography analysis with integrated silicon-crystal diffraction modeling tools
MIR2-Toolkit is an open-source Python program for analyzer-based multiple-image radiography analysis with integrated silicon-crystal diffraction modeling tools and a sample dataset for reproducible evaluation.
Systematic investigation of the diffraction efficiency of sub-15 nm resolution soft X-Ray zone plates via simulation and measurement
This study presents systematic measurements and rigorous coupled-wave analysis (RCWA) of relative and absolute diffraction efficiencies for sub-15 nm soft X-ray Fresnel zone plates. By decoupling intrinsic optical performance from practical beamline transmission losses, this work establishes a highly reliable metrology framework to support the development of next-generation high-resolution synchrotron optics.
Design and performance of a capacitor-based burn-through monitor for high-power X-ray beams at XFEL facilities
We present the results of testing 92 prototypes of a capacitor-based burn-through monitor at the LCLS XCS and XPP end stations. We quantify the beam energy density thresholds required to induce a detectable high-voltage electrical short prior to complete burn-through and demonstrate the reliability of this scalable, low-cost solution for machine and personnel protection at high-power light sources.
Polynomial-shaped electrodes for adaptive X-ray optics
A shaped electrode design for lithium niobate adaptive X-ray mirrors connects actuator degrees of freedom to specific polynomial orders, enabling general shape control and the correction of defocus, coma, and fourth-order aberrations with a limited number of inputs.
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New Frontiers in the Structural Analysis of Nanomaterials: A Deep Learning Leap to Bridge the Gap in Crystalline Order
We address the challenge of solving ab initio crystal structures from X-ray powder diffraction (XRPD) data acquired from nanomaterials. Our approach employs artificial intelligence to pre-process XRPD profiles with the aim of recovering information lost by lacking of crystalline order.
Lighting up materials with X-rays: advanced X-ray excited optical luminescence probe at BM08-XAFS/XRF beamline SESAME
An advanced X-ray excited optical luminescence experimental probe has been developed and commissioned at the BM08-XAFS/XRF beamline, SESAME. The setup is now available to users for measuring emission spectra and performing hyperspectral mapping of a wide range of optical materials over the 200–950 nm spectral range, under monochromatic X-ray beam and laser (UV–Vis/NIR) excitation.
Structure and spectroscopy of propane and propene in the solid state from neutron powder diffraction and inelastic neutron scattering
We have carried out a variable-temperature high-resolution neutron powder diffraction study of perdeuterated propane and propene, as well as an inelastic neutron spectroscopy study of both the protiated and deuterated isotopologues of each substance. Coupled with first-principles computer simulations, these provide new insights into the structure and properties of these cosmically abundant molecular solids.
| IUCrData IUCrData |
5-Cyclopropyl-1-[(4-methylbenzene)sulfonyl]indole-2-carbaldehyde
The crystal structure of 5-cyclopropyl-1-tosyl-1H-indole-2-carbaldehyde shows a nearly planar indole core, with slipped π–π stacking interactions contributing to the crystal packing. Hirshfeld surface analysis indicates that H⋯H, O⋯H/H⋯O and C⋯H/H⋯C contacts make the major contributions to the crystal packing.
4-[(E)-2-(4-{(E)-2-[4-((E)-2-{4-[(E)-2-(4-Cyanophenyl)ethenyl]phenyl}ethenyl)-2,5-bis(octyloxy)phenyl]ethenyl}phenyl)ethenyl]benzonitrile
The complete molecule of the title compound, which was prepared via a Horner olefination, is generated by a crystallographic centre of symmetry. Whereas the terminal cyanostilbene units are almost planar, the central dioctoxybenzene unit is substantially tilted, which limits conjugation. van der Waals forces between the alkyl chains connect the molecules, arranged in layers lying parallel to the ac plane.

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