forthcoming articles
The following articles are a selection of those recently accepted for publication in IUCr journals.
Acta Crystallographica Section A Acta Crystallographica Section A FOUNDATIONS AND ADVANCES |
research papers
research papers
Permissible domain walls in monoclinic ferroelectrics. Part II. The case of MC phases
Following the previous work [Biran & Gorfman (2024). Acta Cryst. A80, 112–128], all the possibilities for permissible (mismatch-free) walls between monoclinic domains of pseudocubic ferroelectric perovskites of MC type are analyzed. The study yields analytical expressions for the orientation of such walls, the orientation relationship between the lattice vectors and for the separation between Bragg peaks diffracted from matched domains.
research papers
Bond topology of chain, ribbon and tube silicates. Part II. Geometrical analysis of infinite 1D arrangements of (TO4)n− tetrahedra
It is shown that all possible topologically distinct chain graphs of tetrahedra may be embedded into 3D Euclidean space. In minerals, separations between linked T cations are 3.06 (15) Å and between unlinked T cations are >3.71 Å, and these distances constrain the ability of embedded chain graphs to occur as structural entities in crystals. Software (GraphT-T) allows this embedding to be tested for stereochemical viability.
Acta Crystallographica Section B Acta Crystallographica Section B STRUCTURAL SCIENCE, CRYSTAL ENGINEERING AND MATERIALS |
feature articles
research papers
Ultrasound-assisted synthesis of a Eu3+-functionalized ZnII coordination polymer as a fluorescent dual detection probe for highly sensitive recognition of HgII and L-Cys
The essay introduces a novel dual-detection fluorescent sensing platform, Eu@nZCP, for highly selective sensing of mercury (Hg) and L-Cysteine (L-Cys) in aqueous media. The platform is based on a new nanoscale ZnII coordination polymer (nZCP) synthesized using ultrasound irradiations, incorporating Eu3+ ions into its host lattice (Eu@nZCP). The analog single crystal (ZCP) was also prepared and using SXRD, its structure determined as a 2D porous CP with distinctive 63 network.
research papers
Assessment of XDM-corrected density functionals for the energy ranking stage of the seventh CSP blind test
Density-functional calculations using numerical atomic orbitals and the exchange-hole dipole moment dispersion model were applied to the energy ranking stage of the [for the]seventh crystal structure prediction blind test. This methodology gave successful predictions of the experimentally isolated polymorphs as being low in energy for three of the compounds considered, and for one additional compound upon inclusion of a vibrational free-energy correction.
research papers
Crystal structure[s] of two novel[new?] high-pressure oxynitrides with composition SnGe4N4O4, from single-crystal electron diffraction
A novel ternary oxynitride SnGe4N4O4 has been synthesized under high-pressure high-temperature conditions in a large-volume press. Its crystal structure (P63mc) and the crystal structure of a 6R polytype (R3m) were determined by three-dimensional electron diffraction from submicrometer-sized crystals.
research papers
research papers
research papers
Polymorph sampling with coupling to extended variables: enhanced sampling of polymorph energy landscapes and free energy perturbation of polymorph ensembles
A design is tested for a polymorph search algorithm relevant for enhanced sampling of crystal structures based on the relation between internal molecular structure variables and corresponding crystal polymorphs as representative of the inherent vapor to crystal transitions that exist in nature. Molecules are represented as extended variables within a thermal reservoir. Unit-cell variables are generated using pseudo-random sampling incorporating a harmonic coupling to extended variables.
Acta Crystallographica Section C Acta Crystallographica Section C STRUCTURAL CHEMISTRY |
research papers
Synthesis, structure and photoluminescence properties of heterometallic-based coordination polymers
Three heterometallic coordination polymers (CPs) have been synthesized and characterized, employing trimesic acid as the organic linker. Upon complexation with mixed metal ions, the doubly and fully deprotonated forms of the ligand exhibit distinct coordination modes, resulting in distinct structural dimensionalities of the final networks. One of the CPs is a promising candidate for targeted investigation as a luminescent sensor for the recognition and detection of small organic molecules.
research papers
Crystal structures, electron spin resonance, and thermogravimetric analysis of three mixed-valence copper cyanide polymers
The crystal structures of three mixed-valence copper cyanide polymers with similar polymeric CuCN networks are described, together with the results of electron spin resonance and thermogravimetric analyses.
research papers
Molecular structure and selective theophylline complexation by conformational change of diethyl N,N′-(1,3-phenylene)dicarbamate
The diethyl N,N′-(1,3-phenylene)dicarbamate–theophylline (1–TEO) complex was obtained by mechanochemistry involving the conformational change of one of the ethyl carbamate groups of 1 from the endo conformation to the exo conformation to allow the formation of intermolecular interactions.
research papers
Two metastable high hydrates of energetic material 3,3′,5,5′-tetranitro-4,4′-bipyrazole
Crystallization of 3,3′,5,5′-tetranitro-4,4′-bipyrazole obeys Ostwald's rule of stages and features the emergence of metastable highly hydrated phases prior to the formation of the stable monohydrate.
research papers
Relationship between synthesis method–crystal structure–melting properties in cocrystals: the case of caffeine–citric acid
A new polymorphic form of the caffeine–citric acid cocrystal, solved by powder X-ray diffraction thanks to synchrotron experiments, was compared with the already known forms. An analysis of the hydrogen bonding indicates that the cocrystal obtained here is less stable than the cocrystals already identified in the literature.
Acta Crystallographica Section D Acta Crystallographica Section D STRUCTURAL BIOLOGY |
research papers
Michaelis-like complex of mouse ketohexokinase isoform C
Thee structure of ketohexokinase C in complex with a natural substrate and product ADP mimicking the Michaelis complex is reported and a comparison with other structures with and without ligands shows that it undergoes a conformational change that places the enzyme into a catalytically competent form. These findings will be of interest to those in the area of enzymology, enzyme structure–function and drug discovery.
research papers
research papers
Identifying and avoiding radiation damage in macromolecular crystallography
This review covers the symptoms of radiation damage in macromolecular crystallography, how to avoid accruing radiation damage during data collection and how to identify and correct for radiation-damage artefacts in a solved structure.
research papers
A database overview of metal-coordination distances in metalloproteins
Through the analysis of more than 115 000 metal-binding sites in metalloproteins, experimentalists are offered useful reference data that improve the understanding of metal-binding interactions and protein coordination. Carboxylate coordination, which is common for a variety of metals, is especially highlighted.
Acta Crystallographica Section E Acta Crystallographica Section E CRYSTALLOGRAPHIC COMMUNICATIONS |
research communications (GO)
Crystal structure characterization, Hirshfeld surface analysis, and DFT calculation studies of 1-(6-amino-5-nitronaphthalen-2-yl)ethanone
The title compound, C12H10N2O3, was obtained by the deacetylation reaction of 1-(6-amino-5-nitronaphthalen-2-yl)ethanone in a concentrated sulfuric acid methanol solution. The molecule comprises a naphthalene ring system bearing an acetyl, amino and nitro groups. In the crystal, the molecules are assembled into a two-dimensional network by N⋯H/H⋯N and O⋯H/H⋯O hydrogen-bonding interactions. n–π and π–π* stacking interactions are the dominant interactions in the three-dimensional crystal packing.
research communications (GO)
Synthesis and crystal structures of 5,17-dibromo-26,28-dihydroxy-25,27-dipropynyloxycalix[4]arene, 5,17-dibromo-26,28-dipropyl-25,27-dipropynyloxycalix[4]arene and 25,27-bis(2-azidoethoxy)-5,17-dibromo-26,28-dihydroxycalix[4]arene
The title compounds are two calix[4]arenes with a pinched cone conformation and one with a 1,3-alternate conformation.
research communications (GM)
Synthesis, crystal structure and anticancer activity of the complex chlorido(η2-ethylene)(quinolin-8-olato-κ2N,O)platinum(II) by experimental and theoretical methods
In the complex [Pt(C9H6NO)Cl(C2H4)], ethylene coordinates with PtII in the η2 manner and in the trans position compared to the coordinating N atom. The in vitro anticancer activity was investigated and DFT calculations were performed to support its anticancer activity.
research communications (GO)
Synthesis, crystal structure and Hirshfeld surface analysis of 2-[(4-hydroxyphenyl)amino]-5,5-diphenyl-1H-imidazol-4(5H)-one
The five-membered ring is slightly ruffled and dihedral angles between the pendant six-membered rings and the central, five-membered ring vary between 50.78 (4) and 86.78 (10)°. In the crystal, O—H⋯N hydrogen bonds and weak π-stacking interactions form inversion dimers, which are linked into chains extending along the c-axis direction by two sets of N—H⋯O hydrogen bonds. The chains are connected into layers parallel to the bc plane by two sets of C—H⋯π(ring) interactions.
research communications (GI)
Synthesis and crystal structure of (NH4)[Ni3(HAsO4)(AsO4)(OH)2]
The crystal structure of the title compound consists of 2∞[Ni3As2(OH)6/3O18/3O1/1(OH)1/1] layers extending parallel to (001) and exhibits disorder of the (O/OH) units of the (hydrogen)arsenate anion; the ammonium counter-cations are sandwiched between adjacent layers.
research communications (GO)
Synthesis and crystal structures of N,2,4,6-tetramethylanilinium trifluoromethanesulfonate and N-isopropylidene-N,2,4,6-tetramethylanilinium trifluoromethanesulfonate
Two aniline-based trifluoromethylsulfonate (trifluoromethanesulfonate) salts, N,2,4,6-tetramethylanilinium trifluoromethanesulfonate and N-isopropylidene-N,2,4,6-tetramethylanilinium trifluoromethanesulfonate, were synthesized and characterized by single-crystal X-ray diffraction.
research communications (GI)
High-resolution crystal structure of the double nitrate hydrate [La(NO3)6]2[Ni(H2O)6]3·6H2O
Very large high-quality crystals of a new member of the family of double nitrates, namely, [La(NO3)6]2[Ni(H2O)6]3·6H2O, were crystallized in large amounts. The structure was determined via single-crystal X-ray diffraction to high resolution. Extensive structural information, including hydrogen-bonding details, was obtained at the same time.
research communications (GM)
Dimeric ethyltin(IV)–dibromide–hydroxide–N,N-dimethylformamide
The title compound exhibits the typical rhomboid-like four-membered Sn–OH ring found in all dimeric molecules of monoorganotin(IV)–dihalide–hydroxides, with acute bond angles at the Sn atom, obtuse bond angles at O atoms and shorter Sn—O bond lengths trans to the ethyl groups.
research communications (GO)
Crystal structure and Hirshfeld surface analysis of (Z)-4-({[2-(benzo[b]thiophen-3-yl)cyclopent-1-en-1-yl]methyl}(phenyl)amino)-4-oxobut-2-enoic acid
In the crystal, molecules are linked by C—H⋯π interactions, forming ribbons along the a axis. Intermolecular C—H⋯O hydrogen bonds connect these ribbons to each other, forming layers parallel to the (01) plane. The molecular packing is strengthened by van der Waals interactions between the layers.
research communications (GO)
Crystal structure of (E)-N-(4-bromophenyl)-2-cyano-3-[3-(2-methylpropyl)-1-phenyl-1H-pyrazol-4-yl]prop-2-enamide
The two independent molecules of C23H21BrN4O are closely similar and roughly planar except for the isopropyl groups. They are connected by hydrogen bonds of the types Namide—H⋯N≡C, Hphenyl⋯O=C and Hphenyl⋯Br.
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Acta Crystallographica Section F Acta Crystallographica Section F STRUCTURAL BIOLOGY COMMUNICATIONS |
Journal of Applied Crystallography Journal of Applied Crystallography |
research papers
Phase contrast neutron imaging compared to wave propagation- and McStas simulations
The article discusses the phase contrast effect and compare two simulation methods based on different theoretical frameworks. It demonstrates the ability to reproduce the phase effect in experimental data, using a well-known simulation framework McStas.
research papers
Reconstructing the reflectivity of liquid surfaces from grazing incidence X-ray off-specular scattering data
Reflectivity from liquid surfaces can be accurately obtained from the diffuse scattering signal around the specular reflection measured by grazing incidence off-specular scattering experiments along with the capillary wave model of diffuse scattering. This method allows for a much faster reflectivity profile acquisition and with an improved signal-noise ratio compared to conventional specular reflectometry.
research papers
High-pressure intrusion of double salt aqueous solution in pure silica chabazite: searching for cation selectivity
The intrusion of a ternary electrolyte solution (KCl+CaCl2) in pure silica chabazite is studied. The structural investigations reveal that the composition of the intruded species is different from those of the initial solution and that the K cations are separated from the Ca ones at the beginning of the intrusion. This seems to be due to different mechanisms of desolvation.
computer programs
iModel: an interactive 3D crystal structure visualization program
iModel is a 3D crystal structure visualization program that allows users to manipulate and customize models. Developed using LabVIEW and Python, it is a potentially powerful tool for crystal structure visualization.
computer programs
research papers
Synthesis and in-depth structure determination of a novel metastable high-pressure CrTe3 phase
High-p-T [pressure/high-temperature] experiments using monoclinic CrTe3 as a starting phase result in a novel structural polymorph identified as CrTe3 (P2/m) using dedicated methods of synchrotron X-ray diffraction and transmission electron microscopy. The magnetic properties of the novel CrTe3 phase were investigated through temperature- and field-dependent magnetization measurements and correlated with auxiliary theoretical investigations by first-principles electronic structure calculations and Monte Carlo simulations.
research papers
Bragg Spot Finder (BSF): a new machine-learning-aided approach to deal with spot finding for rapidly filtering diffraction pattern images
Bragg Spot Finder (BSF) is a UNet-based spotfinder with image preprocessing, a UNet segmentation backbone, and post-processing that includes artifact removal and Watershed segmentation. BSF is supported by the Bragg Spot Detection (BSD) benchmark image dataset containing more than 300 images with more than 66 000 spots.
research papers
Novel high-efficiency 2D position-sensitive ZnS:Ag/6LiF scintillator detector for neutron diffraction
A novel high-efficiency 2D position-sensitive WLSF ZnS:Ag/6LiF scintillator detector has been developed at ISIS for single-crystal diffraction applications. More than a factor of 3 improvement in efficiency was achieved with this detector compared with clear-fibre scintillator detectors. Software routines for further optimizations in position sensitivity and uniformity have been implemented for this type of detector. This new high-efficiency double-layer wavelength-shifting-fibre detector concept enables upgrades to the ISIS instrument suite and extends the scientific capabilities of the facility.
computer programs
research papers
Coupling between cation and anion disorder in β-K2Ca3(CO3)4
This report describes an `order–disorder' transition in the recently discovered K2Ca3(CO3)4 material and the disordered β modification with an unusual K–Ca isomorphism in cation sites. The appearance of mixed K/Ca sites, in turn, causes strong orientational disorder of anions and the emergence of an inversion center (the ordered α modification is non-centrosymmetric).
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Journal of Synchrotron Radiation Journal of Synchrotron Radiation |
research papers
research papers
teaching and education
Teaching about the Birth of Synchrotron Light: the Role of Frascati and a Missed Opportunity
A collection of personal reminiscences illuminates many widely unknown facts about the first steps of synchrotron radiation research. In particular, the events that brought Frascati close to world leadership in this domain.
research papers
research papers
Laminography as a tool for imaging large-size samples with high resolution
We present the laminography setup and software toolbox for efficient imaging of large-size samples. Applicability of the developed technique is demonstrated with imaging the slabs through the whole mouse brain sample stained with heavy elements.
research papers
research papers
topical review
Chromic soft crystals based on luminescent platinum(II) complexes
Platinum(II) complexes exhibit intense luminescence based on their molecular arrangement and chromic luminescence, which is a color change in response to gentle stimuli such as vapor exposure or weak mechanical forces. Both the molecular and crystal designs as soft crystals are critical to effectively control the chromic phenomenon of Pt(II) complexes.
research papers
Toward a quantitative description of solvation structure: an ansatz for differential solution scattering measurements
Total X-ray scattering measurements of dilute solutions are uniquely well suited to address the structural basis for the effects of solvation, exemplified by the success of small-/wide-angle X-ray scattering studies of macromolecules in solution. Herein, we extend this methodology to the high-energy X-ray regime by developing a theoretical framework to describe the differential solution scattering experiment, supported by numerical simulation and experiment.
IUCrData IUCrData |
data reports (HM)
data reports (HO)
4-(1H-2,3-Dihydronaphtho[1,8-de][1,3,2]diazaborinin-2-yl)-1-ethylpyridin-1-ium iodide monohydrate
The cation of the title hydrated salt is a diazaborinane featuring substitution at 1, 2, and 3 positions in the nitrogen–boron six-membered heterocycle. In the crystal, the cations stack along [100] in an alternating head-to-tail manner, while the iodide ion and water molecule form one-dimensional hydrogen-bonded chains beside the cation stack. The cation stacks and I−–water chains are crosslinked by N—H⋯I and N—H⋯O hydrogen bonds.
data reports (HO)
4-(1H-2,3-Dihydronaphtho[1,8-de][1,3,2]diazaborinin-2-yl)-1-ethylpyridin-1-ium iodide
The title compound is a diazaborinane featuring substitution at the 1, 2, and 3 positions of the nitrogen–boron six-membered heterocycle. In the crystal, molecules are stacked in a head-to-tail manner. The iodide ion makes close contacts with three organic molecules and supports the alternating stack.
data reports (HM)
(SC,RS)-Bromido(N-{4-methyl-1-[(4-methylphenyl)sulfanyl]pentan-2-yl}-N′-(pyridin-2-yl)imidazol-2-ylidene)palladium(II) bromide
The molecule of the title NCNHCS pincer N-heterocyclic carbene palladium(II) complex, [PdBr(C21H25N3S)]Br, exhibits a slightly distorted square-planar coordination at the palladium(II) atom, with the five-membered chelate ring nearly planar. The six-membered chelate ring adopts an envelope conformation. Upon chelation, the sulfur atom becomes a stereogenic centre with an RS configuration induced by the chiral carbon of the precursor imidazolium salt.
data reports (HO)
data reports (HO)
data reports (HO)
data reports (HM)
data reports (HM)
data reports (HM)
Bis[2,3-bis(thiophen-2-yl)pyrido[3,4-b]pyrazine]silver(I) perchlorate methanol disolvate
The structure of bis[2,3-bis(thiophen-2-yl)pyrido[3,4-b]pyrazine]silver(I) perchlorate methanol disolvate is monoclinic. The Ag atom coordinates pyrido N atoms and is two-coordinate; however, the Ag atom has nearby O atoms that can be assumed to be weakly bonding – one from the perchlorate anion and one from the methanol solvate. One of the thienyl groups of a 2,3-bis(thiophen-2-yl)pyrido[3,4-b]pyrazine is flipped disordered and was refined to occupancies of 68.4 (6) and 31.6 (6)%.
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