forthcoming articles
The following articles are a selection of those recently accepted for publication in IUCr journals.
| Acta Crystallographica Section A Acta Crystallographica Section A FOUNDATIONS AND ADVANCES |
Revisiting Becker–Coppens (1974): updated recipes for estimating extinction factors in spherical crystallites
A technical update of the Becker–Coppens (1974) recipe for estimating extinction factors in spherical crystallites or grains is provided, addressing limitations in scenarios with higher Bragg angles or stronger extinction effects, as well as providing improved precision in general. The work utilizes modern computing capabilities and improved recipes are provided for easy community adoption.
| Acta Crystallographica Section B Acta Crystallographica Section B STRUCTURAL SCIENCE, CRYSTAL ENGINEERING AND MATERIALS |
Quantitative analysis of facet growth during directional solidification of salol
This study offers a comprehensive analysis of facet growth during directional solidification of salol, focusing on the dynamic evolution of the solid–liquid interface. A novel strategy was developed to identify the crystallographic nature of the observed facets[faces] [here and throughout the paper], whose growth is mainly governed by two-dimensional nucleation, with deviations attributed to competitive growth processes.
Understanding and rationalizing the structure of ionic solids by computational application of Beck's extended coordination number rule
Crystal chemical rules are powerful tools to understand and rationalize inorganic crystal chemical structures. Using an automated approach, Beck's extended coordination number rule is proven to correctly rationalize the coordination within 82.2% of all ternary fluorides.
Structure evolution and high-temperature luminescence versus negative thermal expansion of Ho,Tm-doped Yb2Mo3O12 crystals
Phase transformations and the nature of negative thermal expansion (NTE) was studied at the atomic level usingin-situ single-crystal and powder X-ray diffraction of Ho,Tm-doped Yb2Mo3O12 crystals grown by the flux-melt technique. The thermally enhanced emission was attributed to the NTE of the crystal structure. The high-temperature luminescence study shows the potential of Yb3+, Ho3+, Tm3+-doped crystalline systems for developing a highly sensitive ratiometric optical thermometer by exploiting efficient energy transfer.
Dehydration, polymorphism and ionic conductivity of sodium hypodiphosphates
Hydrated sodium hypodiphosphates, Nax(H4–xP2O6)·nH2O (x = 1–3) were obtained by solution crystallization. Post-crystallization dehydration was used to obtain new crystalline anhydrous forms. This approach resulted in a systematic description of 12 different crystalline forms in sodium–hypodiphosphate–water system.
Sodium dodecyl sulfate induced formation of a messy structure methane hydrate: a molecular dynamics simulation study
The molecular dynamics method was used to confirm that SDS can act as a hydrate promoter, and it was demonstrated that SDS causes the structure of hydrates to be different from the standard Type I structure.
| Acta Crystallographica Section C Acta Crystallographica Section C STRUCTURAL CHEMISTRY |
A new nickel coordination polymer electrode material for hybrid supercapacitors
A new nickel coordination polymer electrode material for hybrid supercapacitors, Ni–mba–K(Na) (where H2mba is 2-mercaptobenzoic acid), has been prepared successfully. As a hybrid capacitor electrode material, Ni–mba–K(Na) exhibits the characteristics of battery-type electrode materials but demonstrates a capacitor-level power density and cycling stability. This structure and performance have rarely been investigated.
New dithiolene derivatives as coordination chromophores: structural, spectroscopic, electrochemical, Hirshfeld surface analyses, and in-vitro cytotoxicity
Seven substituted dithiolene compounds featuring diverse functional groups were synthesized through nucleophilic substitution, cyclocondensation, and transchalcogenation reactions. Structural characterization by single-crystal X-ray diffraction revealed distinct crystallographic systems and intermolecular interactions, further supported by Hirshfeld surface and 2D fingerprint plot analyses. Selected derivatives were evaluated for antiproliferative activity against the NCI-60 cancer cell line panel, exhibiting the lowest cell-growth percentages and negligible toxicity against normal cells.
Preparation and powder X-ray diffraction study of tecovirimat hydrate solid forms
Methods for the reproducible preparation of three hydrated solid forms of the antiviral compound tecovirimat (forms I, III and V) are presented and their phase purity was verified by powder X-ray diffraction using Rietveld refinement. Two previously unknown crystal structures (forms I and V) were determined. A comparative analysis was made of the hydrogen-bonding motifs and packing architectures.
| Acta Crystallographica Section D Acta Crystallographica Section D STRUCTURAL BIOLOGY |
Crystal structures of Fsc1, a novel autophagy factor that mediates autophagosome–vacuole fusion in fission yeast
Crystal structures of the autophagy protein Fsc1 reveal conserved fasciclin features and a stable dimer interface that illuminate its possible role as a scaffold in autophagosome–vacuole membrane fusion.
The crystal structure of human transport and Golgi organization 2 homolog (TANGO2) suggests a cysteine N-terminal nucleophile (Ntn) hydrolase
This study reports the first crystal structure of human TANGO2, mutations of which are responsible for TANGO2 deficiency disorder. The crystallographic analysis demonstrates that interactions between heme and TANGO2 are nonspecific, helping address ongoing questions about TANGO2's role as a heme-trafficking protein.
Automated workflows for strategy computation and data collection at synchrotron beamlines
The paper presents and explains a workflow program for automatically deriving, optimizing and executing complex multi-sweep diffraction experiments for macromolecular crystallography at synchrotron beamlines.
Molecular structure and nickel-binding capacity of Proteus mirabilis UreE
This study presents a 2.0 Å crystal structure and determined the nickel binding capacity of the Proteus mirabilis nickel chaperone, UreE. UreE is essential for the delivery of nickel to the metalloenzyme, urease, which is key for the ability of P. mirabilis to cause urinary tract infections.
Generation and modulation of catalytically relevant states of a dye-decolourizing peroxidase using time-resolved SFX with drop-on-chip mixing and X-ray-driven reduction
We characterize the formation of a ferryl state of a dye-decolourizing peroxidase by drop-on-chip serial femtosecond crystallography and also by modulation of the heme redox state using dose-resolved serial synchrotron crystallography.
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| Acta Crystallographica Section E Acta Crystallographica Section E CRYSTALLOGRAPHIC COMMUNICATIONS |
Crystal structures of the homologues diethyl and dimethyl (10H-indeno[1,2-b]quinoxalin-11-yl)phosphonate: use of non-spherical scattering factors
The tetracyclic ring systems of the two title structures are essentially planar. Molecules are linked by hydrogen bonds N—H⋯O=P, forming rings of graph set R22(12).
Crystal structure of (dibenzo-21-crown-7)diiodidosamarium(II) 1,2-dimethoxyethane hemisolvate
The title compound, [SmI2(C22H28O7)]·0.5C4H10O2 or Sm(dibenzo-21-crown-7)I2, was obtained as a minor product by layering dimethoxyethane solutions of SmI2 and dibenzo-21-crown-7. The asymmetric unit consists of one Sm(dibenzo-21-crown-7)I2 moiety and half a dimethoxyethane solvent molecule in the outer sphere.
Crystal structure of a π-conjugated N-donor ligand-bridged anionic bismuth(III) iodide one-dimensional coordination polymer
A π-conjugated N-donor ligand links μ2-iodido-bridged dinuclear [Bi2I8]2− units to afford a rare one-dimensional anionic iodidobismuth(III) coordination polymer, which was synthesized and structurally characterized by single-crystal X-ray diffraction.
| Acta Crystallographica Section F Acta Crystallographica Section F STRUCTURAL BIOLOGY COMMUNICATIONS |
X ray analysis of the complexes of carbonic anhydrase II in complex with 1,3-oxazole-containing sulfonamide derivatives elucidates the structural basis for exceptionally high inhibitory potency
High-resolution X-ray structures of carbonic anhydrase II in complex with two 1,3-oxazole-containing sulfonamide inhibitors define the interactions responsible for their exceptional inhibitory potency and reveal how subtle ligand instability can influence electron-density interpretation and model refinement.
Crystallization and 1.6 Å resolution crystal structure of an acylated GLP-1/GIP analogue peptide
Herein, 1.6 Å diffraction and subsequent structure solution of an acylated GLP-1/GIP analogue lipopeptide is reported. This represents the first published data on the crystal structure of an unbound GLP-1 and/or GIP analogue lipopeptide.
Optimized bacterial expression of a synthetic BRIL antibody
Here, we document the generation of a T7 Express ΔcybC strain allowing contaminant-free expression of the anti-BRIL Fab BAG2. We also report the crystal structure of BAG2 in complex with native cytochrome b562, a complex arising from expression in canonical Escherichia coli strains.
| Journal of Applied Crystallography Journal of Applied Crystallography |
Towards improving the PF1B beamline McStas model through simulations of a beam characterization experiment
McStas simulations of a recent time-of-flight characterization of the PF1B instrument at the Institut Laue-Langevin show good agreement with the current beamline model, while also highlighting some opportunities to refine parameters of the simulation using the collected time-of-flight data as a benchmark.
One-dimensional Trench-MWPC detector for the D20 powder diffractometer at the ILL
The first one-dimensional implementation of the Trench-MWPC technology was carried out in a large (1.5 m radius and 160° angular coverage) curved 3He-based detector for the D20 high-resolution high-intensity neutron diffractometer at the Institute Laue Langevin.
LaueMatching: a tool for rapid and robust indexing of Laue diffraction patterns
This paper introduces LaueMatching, a rapid and robust algorithm for indexing Laue diffraction patterns using a pre-computed simulation library. It employs pattern-correlation matching, overcoming challenges like weak signals, missing peaks and highly distorted peaks from complex microstructures often faced by traditional peak-finding methods.
Vitess 3.8: a modernized framework for Monte Carlo neutron tracing simulations
VITESS 3.8 introduces modernized neutron-source modeling with new artificial-intelligence-based and KDSource modules, plus expanded component support including a prism module and NCrystal-integrated sample module. It also delivers major upgrades to existing modules and multiple new features, advancing the simulation framework.
Dynamic flat-field correction for high-quality PDF data
This study demonstrates that static flat-field calibration is insufficient for high-energy X-ray scattering measurements of dilute samples due to pixel-level instabilities in CdTe detectors. By introducing a dynamic flat-field correction using periodic water reference measurements, the method improves pair distribution function data quality by nearly 50%, enabling more precise characterization of weakly scattering systems.
On the investigation of the boron-implantation-induced transition from β-Ga2O3 to γ-Ga2O3
This paper reports the structure of the ultrawide-bandgap semiconductor β-Ga2O3:Fe subjected to B+ implantation. Advanced methodological issues in the use of complementary high-resolution X-ray diffraction, X-ray reflectometry and high-resolution transmission electron microscopy in the analysis of the β→γ phase transformation in an irradiated monocrystal of β-Ga2O3 are considered.
LamelODF: a MATLAB-based toolbox for orientation distribution analysis and mapping of lamellar minerals for laboratory and synchrotron X-ray diffractometers
LamelODF is a MATLAB-based toolbox aimed at simplifying the automated extraction of orientation distribution functions (ODFs) from 2D X-ray diffraction data of lamellar minerals in transmission mode. It accommodates both laboratory and synchrotron data formats, providing an integrated pipeline from raw data to spatially resolved textural maps, enabling robust quantification of orientation parameters and mineral phase discrimination.
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| Journal of Synchrotron Radiation Journal of Synchrotron Radiation |
Denoising framework for X-ray absorption spectroscopy data
We introduce a high-performance Python-based XAS denoising package called XASDenoise, which implements our newly developed stationarity warping method and advanced denoising techniques based on Gaussian Process regression and a convolutional autoencoder.
Simultaneous measurements of HERFD-XANES, RXES, and RIXS of caesium using a transition-edge sensor
A transition-edge sensor (TES) enables simultaneous measurements of HERFD-XANES, RXES, and RIXS with a high-energy resolution. This study employed a TES to investigate caesium (Cs) compounds at the Cs LII-edge (5359 eV).
The Hard X-ray Ptychography endstation at the Taiwan Photon Source
This report introduces the newly commissioned hard X-ray ptychography endstation at the Taiwan Photon Source, TPS 25A2, detailing the instrumental specifications and demonstrating a benchmark spatial resolution of 6.9 nm in 2D, showcased through the imaging of a standard test pattern, inorganic nanoparticles, and a complex biological structure.
Demonstration of a diamond anvil cell platform at the Linac Coherent Light Source: capabilities and outlook
A setup for fielding high-pressure samples contained in diamond anvil cells (DACs) at the LCLS X-ray free electron laser is described and example powder X-ray diffraction data presented. Future prospects for experimental capabilities in DACs enabled by the LCLS such as short pulse laser interactions and multiple pulse modes are discussed.
Effect of soft tissue sample preparation techniques for scanning small-angle X-ray scattering experiments
The effect of tissue processing techniques, including fixation and embedding, on the structural information obtained from scanning small-angle X-ray scattering of muscle and connective tissue has been studied. This provides a framework for sSAXS users working with soft tissues to make an informed choice on the sample preservation method, tailored to their own requirements.
Non-destructive orientation tracking of individual β-Sn grains in die-attach solder joints
This study introduces inclined scanning three-dimensional X-ray diffraction microscopy (i-S3DXRD) that enables three-dimensional orientation mapping of planar polycrystalline materials, revealing the thermal fatigue mechanism of Pb-free solder joints.
Absolute scaling of small- and wide-angle X-ray scattering images recorded with short duration X-ray pulses on a large area fiber-taper X-ray detector
An X-ray scattering setup designed to capture small- and wide-angle X-ray scattering scattering on a single, large area detector features a partially transmissive beamstop that facilitates non-invasive recording of X-ray beam position and intensity during acquisition of X-ray scattering images. The integrated transmitted intensity allows different datasets to be put on the same absolute scale and thereby achieve accurate differencing.
High resolution in-beam video rate imaging with the ClearXCam for synchrotron beamlines
The ClearXCam is a diamond-based camera for synchrotron X-ray beams. This imaging detector has 2304 pixels for real-time X-ray beam monitoring with frame rates as fast as 100 Hz. The system provides quantitative beam diagnostics for synchrotron facilities, enabling rapid beam focusing and continuous monitoring of beam position and structure and may facilitate beamline automation efforts.
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AXIS: a Lab-In-The-Loop machine learning approach for generalized detection of macromolecular crystals
AXIS (AI-based Crystal Identification System) combines artificial intelligence with an iterative Lab-In-The-Loop approach for automated crystal detection. AXIS ensures high performance in crystal detection, requires small size training datasets and facilitates rapid adaptation to local and changing conditions at any given facility.
| IUCrData IUCrData |
On the crystal structure of tribenzyltin(IV) iodide, Bz3SnI: a correction
Single crystals of tribenzyltin(IV) iodide, prepared from hexabenzyldistannoxane, Bz3SnOSnBz3, and hydroiodic acid, have been characterized by single-crystal X-ray diffraction in order to clarify some inconsistencies in the original structure determination. In particular, the present study provides a significantly longer tin–iodide distance, which corresponds much better with those in related structural studies.

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