metal-organic compounds
Bis(1,1,5,5-tetramethyl-2-thiobiuretato)nickel(II)
aDepartment of Chemistry, University of Hull, Cottingham Road, Kingston-upon-Hull HU6 7RX, England
*Correspondence e-mail: j.d.crane@hull.ac.uk
At 150 K, the title compound, [Ni(C6H12N3OS)2], comprises a cis square-planar nickel(II) ion with two anionic bidentate 1,1,5,5-tetramethyl-2-thiobiuretate ligands. All non-H atoms lie on a crystallographic mirror plane.
Comment
The title compound, (I), is the neutral homoleptic nickel(II) complex of the anionic bidentate 1,1,5,5-tetramethyl-2-thiobiuretate ligand. The complex is cis square-planar (Table 1) and all non-H atoms lie on a crystallographic mirror plane (Fig. 1).
In both of the ligands, the pattern of bond distances is similar to that observed for the corresponding homoleptic cobalt(III) complex reported by Crane & Whittingham (2004) and indicates that the formal negative charge is predominately localized on the S atom. The relatively long C—S and short C—O average bond lengths [1.747 (4) and 1.261 (3) Å] are consistent with mostly single- and double-bond character, respectively, and this bond localization is also reflected in the average C—N bond distances to the central N atom, viz. 1.323 (7) Å in the (iso)thiourea group and 1.348 (7) Å in the urea group.
The molecules are packed in layers (Figs. 3 and 4) perpendicular to the b axis, with an interlayer spacing of 3.5062 (3) Å. Of the shortest non-H interatomic contact distance between layers (Table 2), the shortest involving the S atoms is 3.5986 (5) Å for S2 and N5i [symmetry code: (i) −x, 1 − y, −z].
Experimental
The title compound, (I), was prepared by a variation of the method of Koenig et al. (1987). Dimethylcarbamyl chloride (1.08 g, 10 mmol) and potassium thiocyanate (0.97 g, 10 mmol) in acetonitrile (40 ml) were heated at reflux for 2 h. The solution was allowed to cool to room temperature and excess 40% aqueous dimethylamine (3.4 ml, 30 mmol) was added with stirring, followed after 15 min by nickel(II) acetate tetrahydrate (1.25 g, 5 mmol) and water (5 ml). After stirring for a further 15 min, the crude product was obtained as a purple powder by precipitation with methanol (200 ml), isolation by filtration and washing sequentially with water, methanol and diethyl ether. Suitable crystals were grown by recrystallization from dichloromethane/methanol: yield 1.07 g, 53%. Spectroscopic analysis: IR (KBr disk, cm−1): ν 2921 (w), 1540 (s), 1481 (s), 1389 (s), 1357 (s), 1266 (w), 1198 (w), 1115 (m), 1031 (m), 734 (m), 474 (w); 1H NMR (CDCl3, p.p.m.): δ 3.18 (br, s, 6H), 3.08 (br, s, 6H), 2.96 (s, 6H), 2.87 (s, 6H); 13C NMR (CDCl3, p.p.m.): δ 171.3, 163.1, 40.1, 39.7, 37.4, 35.9. Analysis calculated for C12H24N6NiO2S2: C 35.40, H 5.94, N 20.64, S 15.75%; found: C 35.49, H 6.03, N 20.49, S 15.71%.
Crystal data
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Refinement
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All H atoms were initially located in a difference Fourier map. The methyl H atoms were constrained to an ideal geometry, with a C—H distance of 0.98 Å, and Uiso(H) was set to 1.2Ueq(C), but each group was allowed to rotate freely about its X—C bond. In their final positions, none of the methyl groups accords with the crystallographic mirror symmetry and hence each methyl group is disordered 50:50 about the mirror plane.
Data collection: X-AREA (Stoe & Cie, 2001); cell X-AREA; data reduction: X-RED (Stoe & Cie, 2001); program(s) used to solve structure: X-STEP32 (Stoe & Cie, 2001) and WinGX (Farrugia, 1999); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX and PLATON (Spek, 2001).
Supporting information
https://doi.org/10.1107/S1600536804006294/lh6184sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536804006294/lh6184Isup2.hkl
Data collection: X-AREA (STOE 2001); cell
X-AREA; data reduction: X-RED (STOE 2001); program(s) used to solve structure: X-STEP32 (STOE 2001) and WinGX (Farrugia 1999); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEP-3 for Windows (Farrugia 1997); software used to prepare material for publication: WinGX and PLATON (Spek 2001).[Ni(C6H12N3OS)2] | F(000) = 856 |
Mr = 407.20 | Dx = 1.498 Mg m−3 |
Orthorhombic, Pnma | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ac 2n | Cell parameters from 10003 reflections |
a = 13.935 (1) Å | θ = 2.2–30.0° |
b = 7.0123 (5) Å | µ = 1.32 mm−1 |
c = 18.4739 (18) Å | T = 150 K |
V = 1805.2 (3) Å3 | Plate, purple |
Z = 4 | 0.20 × 0.18 × 0.02 mm |
Stoe IPDS-II area-detector diffractometer | 2820 independent reflections |
Radiation source: fine-focus sealed tube | 1936 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.065 |
ω scans | θmax = 30.0°, θmin = 2.2° |
Absorption correction: numerical (X-SHAPE; Stoe & Cie, 2001) | h = −16→19 |
Tmin = 0.630, Tmax = 0.751 | k = −9→9 |
18236 measured reflections | l = −25→25 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.030 | H-atom parameters constrained |
wR(F2) = 0.060 | w = 1/[σ2(Fo2) + (0.0271P)2] where P = (Fo2 + 2Fc2)/3 |
S = 0.87 | (Δ/σ)max = 0.001 |
2820 reflections | Δρmax = 0.36 e Å−3 |
148 parameters | Δρmin = −0.26 e Å−3 |
0 restraints | Extinction correction: SHELXL97, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0017 (3) |
Experimental. The crystal was mounted under the perfluoro-polyether PFO-XR75 (Lancaster Synthesis). A total of 180 frames (6 minute exposure) were collected (phi/omega: 45/0–180, delta-omega = 1 °.) |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
Ni1 | 0.25640 (2) | 0.7500 | −0.026041 (15) | 0.02336 (8) | |
S1 | 0.26181 (4) | 0.7500 | −0.14166 (3) | 0.03616 (15) | |
S2 | 0.10385 (4) | 0.7500 | −0.03869 (3) | 0.02723 (13) | |
O1 | 0.38951 (12) | 0.7500 | −0.01340 (9) | 0.0346 (4) | |
O2 | 0.25262 (13) | 0.7500 | 0.07478 (8) | 0.0401 (4) | |
N1 | 0.45995 (14) | 0.7500 | −0.12976 (11) | 0.0304 (5) | |
N2 | 0.39559 (15) | 0.7500 | −0.24175 (11) | 0.0341 (5) | |
N3 | 0.54773 (15) | 0.7500 | −0.02573 (13) | 0.0376 (5) | |
N4 | 0.09073 (15) | 0.7500 | 0.11138 (9) | 0.0262 (4) | |
N5 | −0.04648 (14) | 0.7500 | 0.04589 (10) | 0.0287 (5) | |
N6 | 0.21546 (17) | 0.7500 | 0.19149 (11) | 0.0362 (5) | |
C1 | 0.38142 (17) | 0.7500 | −0.16931 (12) | 0.0263 (5) | |
C2 | 0.45972 (17) | 0.7500 | −0.05643 (13) | 0.0287 (5) | |
C3 | 0.3186 (2) | 0.7500 | −0.29499 (13) | 0.0393 (6) | |
H3A | 0.3352 | 0.8364 | −0.3348 | 0.047* | 0.50 |
H3B | 0.2590 | 0.7930 | −0.2721 | 0.047* | 0.50 |
H3C | 0.3099 | 0.6206 | −0.3140 | 0.047* | 0.50 |
C4 | 0.4930 (2) | 0.7500 | −0.27118 (16) | 0.0517 (8) | |
H4A | 0.5362 | 0.8144 | −0.2372 | 0.062* | 0.50 |
H4B | 0.4935 | 0.8174 | −0.3177 | 0.062* | 0.50 |
H4C | 0.5144 | 0.6182 | −0.2784 | 0.062* | 0.50 |
C5 | 0.5585 (2) | 0.7500 | 0.05249 (16) | 0.0425 (7) | |
H5A | 0.6129 | 0.8311 | 0.0660 | 0.051* | 0.50 |
H5B | 0.5702 | 0.6195 | 0.0694 | 0.051* | 0.50 |
H5C | 0.4998 | 0.7993 | 0.0749 | 0.051* | 0.50 |
C6 | 0.6360 (2) | 0.7500 | −0.06748 (18) | 0.0501 (8) | |
H6A | 0.6641 | 0.6219 | −0.0670 | 0.060* | 0.50 |
H6B | 0.6814 | 0.8407 | −0.0461 | 0.060* | 0.50 |
H6C | 0.6221 | 0.7875 | −0.1175 | 0.060* | 0.50 |
C7 | 0.04920 (16) | 0.7500 | 0.04660 (12) | 0.0229 (4) | |
C8 | 0.18610 (19) | 0.7500 | 0.12095 (12) | 0.0276 (5) | |
C9 | −0.10292 (18) | 0.7500 | −0.02043 (13) | 0.0351 (6) | |
H9A | −0.1128 | 0.8816 | −0.0367 | 0.042* | 0.50 |
H9B | −0.1653 | 0.6900 | −0.0113 | 0.042* | 0.50 |
H9C | −0.0688 | 0.6784 | −0.0580 | 0.042* | 0.50 |
C10 | −0.10153 (19) | 0.7500 | 0.11318 (12) | 0.0348 (6) | |
H10A | −0.1191 | 0.6188 | 0.1258 | 0.042* | 0.50 |
H10B | −0.1599 | 0.8262 | 0.1068 | 0.042* | 0.50 |
H10C | −0.0626 | 0.8050 | 0.1521 | 0.042* | 0.50 |
C11 | 0.3170 (2) | 0.7500 | 0.20903 (15) | 0.0553 (9) | |
H11A | 0.3541 | 0.7137 | 0.1661 | 0.066* | 0.50 |
H11B | 0.3292 | 0.6585 | 0.2480 | 0.066* | 0.50 |
H11C | 0.3363 | 0.8778 | 0.2248 | 0.066* | 0.50 |
C12 | 0.1490 (2) | 0.7500 | 0.25251 (15) | 0.0445 (7) | |
H12A | 0.0857 | 0.7063 | 0.2362 | 0.053* | 0.50 |
H12B | 0.1435 | 0.8795 | 0.2720 | 0.053* | 0.50 |
H12C | 0.1729 | 0.6642 | 0.2903 | 0.053* | 0.50 |
U11 | U22 | U33 | U12 | U13 | U23 | |
Ni1 | 0.02122 (15) | 0.02998 (15) | 0.01888 (12) | 0.000 | −0.00043 (11) | 0.000 |
S1 | 0.0237 (3) | 0.0646 (4) | 0.0202 (2) | 0.000 | 0.0022 (2) | 0.000 |
S2 | 0.0231 (3) | 0.0417 (3) | 0.0169 (2) | 0.000 | 0.00057 (19) | 0.000 |
O1 | 0.0233 (8) | 0.0532 (12) | 0.0272 (8) | 0.000 | −0.0015 (7) | 0.000 |
O2 | 0.0283 (9) | 0.0740 (13) | 0.0180 (8) | 0.000 | −0.0008 (7) | 0.000 |
N1 | 0.0253 (10) | 0.0366 (12) | 0.0293 (10) | 0.000 | 0.0032 (8) | 0.000 |
N2 | 0.0313 (10) | 0.0455 (13) | 0.0255 (9) | 0.000 | 0.0070 (9) | 0.000 |
N3 | 0.0228 (10) | 0.0506 (14) | 0.0395 (12) | 0.000 | −0.0029 (9) | 0.000 |
N4 | 0.0312 (11) | 0.0288 (11) | 0.0185 (8) | 0.000 | 0.0028 (7) | 0.000 |
N5 | 0.0268 (10) | 0.0392 (13) | 0.0202 (9) | 0.000 | 0.0028 (7) | 0.000 |
N6 | 0.0403 (12) | 0.0494 (14) | 0.0189 (9) | 0.000 | −0.0059 (8) | 0.000 |
C1 | 0.0273 (12) | 0.0248 (12) | 0.0268 (11) | 0.000 | 0.0029 (8) | 0.000 |
C2 | 0.0231 (11) | 0.0299 (13) | 0.0331 (12) | 0.000 | −0.0008 (9) | 0.000 |
C3 | 0.0453 (15) | 0.0508 (16) | 0.0218 (11) | 0.000 | 0.0023 (11) | 0.000 |
C4 | 0.0396 (16) | 0.076 (2) | 0.0394 (15) | 0.000 | 0.0175 (12) | 0.000 |
C5 | 0.0342 (14) | 0.0494 (19) | 0.0439 (16) | 0.000 | −0.0106 (12) | 0.000 |
C6 | 0.0248 (13) | 0.070 (2) | 0.0558 (18) | 0.000 | −0.0017 (12) | 0.000 |
C7 | 0.0277 (11) | 0.0186 (10) | 0.0225 (10) | 0.000 | 0.0016 (8) | 0.000 |
C8 | 0.0358 (12) | 0.0270 (11) | 0.0199 (10) | 0.000 | −0.0017 (9) | 0.000 |
C9 | 0.0252 (12) | 0.0500 (16) | 0.0300 (12) | 0.000 | 0.0016 (10) | 0.000 |
C10 | 0.0304 (13) | 0.0446 (16) | 0.0293 (12) | 0.000 | 0.0089 (10) | 0.000 |
C11 | 0.0518 (18) | 0.085 (2) | 0.0290 (14) | 0.000 | −0.0181 (13) | 0.000 |
C12 | 0.0666 (19) | 0.0478 (16) | 0.0191 (11) | 0.000 | 0.0009 (11) | 0.000 |
Ni1—O1 | 1.8694 (17) | C3—H3A | 0.9800 |
Ni1—O2 | 1.8634 (15) | C3—H3B | 0.9800 |
Ni1—S1 | 2.1374 (7) | C3—H3C | 0.9800 |
Ni1—S2 | 2.1386 (7) | C4—H4A | 0.9800 |
S1—C1 | 1.743 (2) | C4—H4B | 0.9800 |
S2—C7 | 1.750 (2) | C4—H4C | 0.9800 |
O1—C2 | 1.261 (3) | C5—H5A | 0.9800 |
O2—C8 | 1.260 (3) | C5—H5B | 0.9800 |
N1—C1 | 1.316 (3) | C5—H5C | 0.9800 |
N1—C2 | 1.355 (3) | C6—H6A | 0.9800 |
N2—C1 | 1.353 (3) | C6—H6B | 0.9800 |
N2—C3 | 1.455 (3) | C6—H6C | 0.9800 |
N2—C4 | 1.462 (3) | C9—H9A | 0.9800 |
N3—C2 | 1.351 (3) | C9—H9B | 0.9800 |
N3—C6 | 1.452 (4) | C9—H9C | 0.9800 |
N3—C5 | 1.453 (4) | C10—H10A | 0.9800 |
N4—C7 | 1.329 (3) | C10—H10B | 0.9800 |
N4—C8 | 1.341 (3) | C10—H10C | 0.9800 |
N5—C7 | 1.333 (3) | C11—H11A | 0.9800 |
N5—C9 | 1.456 (3) | C11—H11B | 0.9800 |
N5—C10 | 1.461 (3) | C11—H11C | 0.9800 |
N6—C8 | 1.366 (3) | C12—H12A | 0.9800 |
N6—C11 | 1.452 (4) | C12—H12B | 0.9800 |
N6—C12 | 1.459 (4) | C12—H12C | 0.9800 |
S2···N5i | 3.5986 (5) | N6···C3iii | 3.5470 (6) |
C2···C5ii | 3.5161 (4) | N2···C12iv | 3.5622 (7) |
O1—Ni1—S1 | 95.16 (6) | N3—C5—H5A | 109.5 |
O2—Ni1—S2 | 94.65 (6) | N3—C5—H5B | 109.5 |
O1—Ni1—O2 | 84.45 (8) | H5A—C5—H5B | 109.5 |
S1—Ni1—S2 | 85.75 (3) | N3—C5—H5C | 109.5 |
O1—Ni1—S2 | 179.10 (6) | H5A—C5—H5C | 109.5 |
O2—Ni1—S1 | 179.60 (7) | H5B—C5—H5C | 109.5 |
C1—S1—Ni1 | 109.05 (8) | N3—C6—H6A | 109.5 |
C7—S2—Ni1 | 109.52 (8) | N3—C6—H6B | 109.5 |
C2—O1—Ni1 | 133.73 (16) | H6A—C6—H6B | 109.5 |
C8—O2—Ni1 | 134.24 (17) | N3—C6—H6C | 109.5 |
C1—N1—C2 | 123.6 (2) | H6A—C6—H6C | 109.5 |
C1—N2—C3 | 124.1 (2) | H6B—C6—H6C | 109.5 |
C1—N2—C4 | 120.2 (2) | N4—C7—N5 | 116.4 (2) |
C3—N2—C4 | 115.6 (2) | N4—C7—S2 | 128.39 (18) |
C2—N3—C6 | 123.1 (2) | N5—C7—S2 | 115.23 (17) |
C2—N3—C5 | 120.8 (2) | O2—C8—N4 | 129.8 (2) |
C6—N3—C5 | 116.1 (2) | O2—C8—N6 | 115.2 (2) |
C7—N4—C8 | 123.39 (19) | N4—C8—N6 | 115.0 (2) |
C7—N5—C9 | 123.27 (19) | N5—C9—H9A | 109.5 |
C7—N5—C10 | 121.1 (2) | N5—C9—H9B | 109.5 |
C9—N5—C10 | 115.62 (19) | H9A—C9—H9B | 109.5 |
C8—N6—C11 | 120.3 (2) | N5—C9—H9C | 109.5 |
C8—N6—C12 | 123.2 (2) | H9A—C9—H9C | 109.5 |
C11—N6—C12 | 116.5 (2) | H9B—C9—H9C | 109.5 |
N1—C1—N2 | 115.3 (2) | N5—C10—H10A | 109.5 |
N1—C1—S1 | 129.24 (18) | N5—C10—H10B | 109.5 |
N2—C1—S1 | 115.43 (18) | H10A—C10—H10B | 109.5 |
O1—C2—N3 | 116.1 (2) | N5—C10—H10C | 109.5 |
O1—C2—N1 | 129.2 (2) | H10A—C10—H10C | 109.5 |
N3—C2—N1 | 114.7 (2) | H10B—C10—H10C | 109.5 |
N2—C3—H3A | 109.5 | N6—C11—H11A | 109.5 |
N2—C3—H3B | 109.5 | N6—C11—H11B | 109.5 |
H3A—C3—H3B | 109.5 | H11A—C11—H11B | 109.5 |
N2—C3—H3C | 109.5 | N6—C11—H11C | 109.5 |
H3A—C3—H3C | 109.5 | H11A—C11—H11C | 109.5 |
H3B—C3—H3C | 109.5 | H11B—C11—H11C | 109.5 |
N2—C4—H4A | 109.5 | N6—C12—H12A | 109.5 |
N2—C4—H4B | 109.5 | N6—C12—H12B | 109.5 |
H4A—C4—H4B | 109.5 | H12A—C12—H12B | 109.5 |
N2—C4—H4C | 109.5 | N6—C12—H12C | 109.5 |
H4A—C4—H4C | 109.5 | H12A—C12—H12C | 109.5 |
H4B—C4—H4C | 109.5 | H12B—C12—H12C | 109.5 |
O1—Ni1—S1—C1 | 0.0 | C6—N3—C2—N1 | 0.000 (1) |
S2—Ni1—S1—C1 | 180.0 | C5—N3—C2—N1 | 180.0 |
O2—Ni1—S2—C7 | 0.0 | C1—N1—C2—O1 | 0.000 (1) |
S1—Ni1—S2—C7 | 180.0 | C1—N1—C2—N3 | 180.0 |
O2—Ni1—O1—C2 | 180.0 | C8—N4—C7—N5 | 180.0 |
S1—Ni1—O1—C2 | 0.0 | C8—N4—C7—S2 | 0.0 |
O1—Ni1—O2—C8 | 180.0 | C9—N5—C7—N4 | 180.0 |
S2—Ni1—O2—C8 | 0.0 | C10—N5—C7—N4 | 0.0 |
C2—N1—C1—N2 | 180.0 | C9—N5—C7—S2 | 0.0 |
C2—N1—C1—S1 | 0.000 (1) | C10—N5—C7—S2 | 180.0 |
C3—N2—C1—N1 | 180.0 | Ni1—S2—C7—N4 | 0.0 |
C4—N2—C1—N1 | 0.0 | Ni1—S2—C7—N5 | 180.0 |
C3—N2—C1—S1 | 0.0 | Ni1—O2—C8—N4 | 0.0 |
C4—N2—C1—S1 | 180.0 | Ni1—O2—C8—N6 | 180.0 |
Ni1—S1—C1—N1 | 0.0 | C7—N4—C8—O2 | 0.0 |
Ni1—S1—C1—N2 | 180.0 | C7—N4—C8—N6 | 180.0 |
Ni1—O1—C2—N3 | 180.0 | C11—N6—C8—O2 | 0.0 |
Ni1—O1—C2—N1 | 0.000 (1) | C12—N6—C8—O2 | 180.0 |
C6—N3—C2—O1 | 180.0 | C11—N6—C8—N4 | 180.0 |
C5—N3—C2—O1 | 0.000 (1) | C12—N6—C8—N4 | 0.0 |
Symmetry codes: (i) −x, −y+1, −z; (ii) −x+1, −y+1, −z; (iii) −x+1/2, −y+1, z+1/2; (iv) −x+1/2, −y+1, z−1/2. |
References
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