organic compounds
Powder diffraction study of 1,2:3,4-dibenzanthracene
aDepartment of Pharmaceutical Sciences, University of Strathclyde, 27 Taylor Street, Glasgow G4 0NR, Scotland, and bISIS Facility, Rutherford Appleton Laboratory, Chilton, Didcot, Oxfordshire OX11 0QX, England
*Correspondence e-mail: [email protected]
The of 1,2:3,4-dibenzanthracene, C22H14, was solved by simulated annealing from laboratory X-ray powder diffraction data collected at room temperature to 1.8 Å resolution. Subsequent Rietveld refinement yielded an Rwp value of 0.036. The molecules crystallize in P21 with two independent molecules in the which pack in a stacked arrangement along the b axis.
Comment
The title compound, (I)
, was used as supplied and its crystal structure was solved by simulated annealing using laboratory X-ray powder diffraction data (Fig. 1
). The compound crystallizes in space group P21 with two independent molecules in the (Fig. 2
).
The crystal packing adopts a γ-type structure, with molecules stacked in the direction of the b axis (Desiraju & Gavezzotti, 1989
). The distance between the centres of mass of neighbouring molecules within each stack (Rn) equals the shortest cell axis, 5.062 Å, and the perpendicular distance between the molecular planes within each stack (Rip) is 3.740 Å, with an offset angle α = 43° (Fig. 3
).
| Figure 1 Final observed (points), calculated (line) and difference [(yobs − ycalc)/σ(yobs)] profiles for the Rietveld refinement of (I) . |
| Figure 2 The atomic arrangement in (I) , showing the two molecules in the asymmetric unit. The dihedral angle between the least-squares planes through each of the molecules is 47.8 (8)°. Isotropic displacement spheres are shown at the 50% probability level. |
| Figure 3 Top: view showing the molecular stacking along the b axis in (I) for both unique molecules. Molecules within each stack form offset face-to-face attractive contacts (Hunter et al., 1990 ). Bottom: view down the b axis onto the ac plane. The crystal packing arrangement is stabilized by a series of C—H⋯π contacts between adjacent stacks, with H⋯ring-centroid (Cg) distances in the range 2.9 (5)–3.3 (5) Å. Dashed lines represent three of these contacts. (1) C4A—H26A⋯Cg of the ring C1–C6 in the molecule at (x, 1 + y, z) [H26A⋯Cg 2.9 (5) Å], (2) C2A—H24A⋯Cg of the ring C5A–C10A in the molecule at (1 − x, + y, 1 − z) [H24A⋯Cg 3.2 (6) Å] and (3) the symmetry equivalent of (1), where H26A and Cg are in the molecules at (1 − x, + y, 1 − z). |
Experimental
1,2:3,4-Dibenzanthracene (Sigma–Aldrich) was lightly ground in a mortar, loaded into a 0.7 mm borosilicate glass capillary and mounted on the diffractometer. Data were collected from a sample in a rotating 0.7 mm borosilicate glass capillary using a variable count time scheme (Hill & Madsen, 2002
).
Crystal data
|
Data collection
|
Refinement
|
The diffraction pattern indexed to a monoclinic cell [F(25) = 210.1, M(25) = 71.8; DICVOL-91 (Boultif & Louer, 1991
)], and space group P21 was assigned from volume considerations and a statistical consideration of the The data set was background-subtracted and truncated to 2θ = 51.9° for Pawley fitting (Pawley, 1981
; χPawley2 = 3.96), and the structure was solved using the simulated annealing (SA) global optimization procedure of David et al. (1998
), as implemented in the DASH computer program (David et al., 2001
). The SA structure solution involved the optimization of two independent fragments in the asymmetric unit, totalling 12 degrees of freedom. The best SA solution had a favourable χSA2/χPawley2 ratio of 4.53 and a chemically reasonable packing arrangement, and exhibited no significant misfit to the data. The solved structure was then refined with the full data set (2θ 4–69.8°) using a restrained (Rietveld, 1969
), as implemented in TOPAS (Coelho, 2003
), with the value of Rwp falling from 0.146 to 0.036 during the The y coordinate of atom C1 was fixed and all remaining atomic positions (including H atoms) were refined, subject to a series of restraints on bond lengths, bond angles and planarity. Inclusion of a March–Dollase (Dollase, 1986
) preferred orientation correction indicated the presence of mild (1.16) preferred orientation along the [010] direction, and a spherical harmonics correction of intensities for preferred orientation was applied in the final refinement. The observed and calculated diffraction patterns for the refined crystal structure are shown in Fig. 1
.
Data collection: DIFFRAC plus XRD Commander (Kienle & Jacob, 2003); cell TOPAS (Coelho, 2003
); data reduction: DASH (David et al., 2001
); structure solution: DASH; structure refinement: TOPAS; molecular graphics: PLATON (Spek, 2003
); publication software: enCIFer (Allen et al., 2004
).
Supporting information
contains datablocks global, I. DOI: https://doi.org/10.1107/S1600536805012171/lh6405sup1.cif
Rietveld powder data: contains datablock I. DOI: https://doi.org/10.1107/S1600536805012171/lh6405Isup2.rtv
Data collection: D8-Advance Control Software; cell Please provide missing details; data reduction: DASH (David et al., 2001); program(s) used to solve structure: DASH; program(s) used to refine structure: TOPAS (Coelho, 2003); molecular graphics: Please provide missing details; software used to prepare material for publication: Please provide missing details.
| C22H14 | F(000) = 584 |
| Mr = 278.33 | Dx = 1.311 Mg m−3 |
| Monoclinic, P21 | Melting point: 500 K |
| Hall symbol: P 2yb | Cu Kα1 radiation, λ = 1.54056 Å |
| a = 18.2966 (5) Å | µ = 0.56 mm−1 |
| b = 5.06225 (10) Å | T = 295 K |
| c = 15.7245 (4) Å | Particle morphology: visual estimate, flat plates |
| β = 104.5574 (15)° | pale-yellow |
| V = 1409.68 (6) Å3 | cylinder, 10 × 0.7 mm |
| Z = 4 | Specimen preparation: Prepared at 295 K |
| Bruker D8 Advance diffractometer | Data collection mode: transmission |
| Radiation source: sealed X-ray tube, Bruker D8 | Scan method: step |
| Primary focussing, Ge 111 monochromator | 2θmin = 4°, 2θmax = 69.8°, 2θstep = 0.014° |
| Specimen mounting: 0.7 mm borosilicate capillary |
| Least-squares matrix: selected elements only | 214 restraints |
| Rp = 0.036 | 1 constraint |
| Rwp = 0.036 | Only H-atom coordinates refined |
| Rexp = 0.014 | Weighting scheme based on measured s.u.'s 1/σ(Yobs)2 |
| 4544 data points | (Δ/σ)max = 0.011 |
| Profile function: Fundamental parameters with axial divergence correction | Background function: Chebyshev polynomial |
| 241 parameters | Preferred orientation correction: A spherical harmonics-based preferred orientation correction was applied with TOPAS during the Rietveld refinement. |
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All e.s.d.'s are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles |
| x | y | z | Uiso*/Ueq | ||
| C1 | 0.305 (3) | −0.06763 | 0.781 (5) | 0.0465 (10)* | |
| C2 | 0.235 (3) | −0.011 (17) | 0.724 (3) | 0.0465 (10)* | |
| C3 | 0.283 (3) | 0.274 (16) | 0.880 (3) | 0.0465 (10)* | |
| C4 | 0.331 (2) | 0.085 (17) | 0.857 (3) | 0.0465 (10)* | |
| C5 | 0.211 (3) | 0.323 (15) | 0.824 (3) | 0.0465 (10)* | |
| C6 | 0.187 (3) | 0.179 (16) | 0.746 (4) | 0.0465 (10)* | |
| C7 | 0.115 (3) | 0.228 (15) | 0.690 (3) | 0.0465 (10)* | |
| C8 | 0.163 (3) | 0.513 (13) | 0.847 (3) | 0.0465 (10)* | |
| C9 | 0.092 (3) | 0.562 (14) | 0.791 (4) | 0.0465 (10)* | |
| C10 | 0.067 (3) | 0.419 (14) | 0.712 (3) | 0.0465 (10)* | |
| C11 | −0.052 (3) | 0.658 (16) | 0.679 (4) | 0.0465 (10)* | |
| C12 | −0.005 (3) | 0.467 (17) | 0.656 (4) | 0.0465 (10)* | |
| C13 | −0.029 (3) | 0.323 (16) | 0.578 (4) | 0.0465 (10)* | |
| C14 | −0.100 (3) | 0.372 (16) | 0.522 (3) | 0.0465 (10)* | |
| C15 | −0.148 (3) | 0.561 (16) | 0.545 (4) | 0.0465 (10)* | |
| C16 | −0.123 (3) | 0.706 (16) | 0.622 (4) | 0.0465 (10)* | |
| C17 | 0.044 (3) | 0.752 (17) | 0.813 (4) | 0.0465 (10)* | |
| C18 | −0.028 (3) | 0.801 (14) | 0.757 (4) | 0.0465 (10)* | |
| C19 | −0.075 (3) | 0.991 (18) | 0.780 (4) | 0.0465 (10)* | |
| C20 | −0.050 (3) | 1.136 (17) | 0.858 (4) | 0.0465 (10)* | |
| C21 | 0.021 (3) | 1.084 (17) | 0.915 (3) | 0.0465 (10)* | |
| C22 | 0.068 (3) | 0.896 (16) | 0.891 (4) | 0.0465 (10)* | |
| H23 | 0.34 (3) | −0.19 (11) | 0.76 (3) | 0.0760* | |
| H24 | 0.22 (3) | −0.11 (9) | 0.67 (3) | 0.0760* | |
| H25 | 0.30 (3) | 0.37 (11) | 0.93 (2) | 0.0760* | |
| H26 | 0.38 (2) | 0.05 (10) | 0.90 (3) | 0.0760* | |
| H27 | 0.10 (3) | 0.13 (10) | 0.64 (3) | 0.0760* | |
| H28 | 0.18 (2) | 0.61 (12) | 0.90 (3) | 0.0760* | |
| H29 | 0.00 (2) | 0.20 (11) | 0.56 (3) | 0.0760* | |
| H30 | −0.12 (2) | 0.28 (9) | 0.47 (3) | 0.0760* | |
| H31 | −0.196 (17) | 0.59 (8) | 0.51 (3) | 0.0760* | |
| H32 | −0.16 (2) | 0.83 (9) | 0.64 (3) | 0.0760* | |
| H33 | −0.12 (2) | 1.03 (12) | 0.74 (3) | 0.0760* | |
| H34 | −0.08 (2) | 1.26 (10) | 0.87 (3) | 0.0760* | |
| H35 | 0.04 (3) | 1.18 (12) | 0.97 (3) | 0.0760* | |
| H36 | 0.12 (2) | 0.86 (9) | 0.93 (3) | 0.0760* | |
| C1A | 0.393 (3) | 0.174 (16) | 0.616 (3) | 0.0465 (10)* | |
| C2A | 0.421 (3) | 0.133 (15) | 0.542 (4) | 0.0465 (10)* | |
| C3A | 0.308 (3) | 0.511 (18) | 0.538 (4) | 0.0465 (10)* | |
| C4A | 0.337 (3) | 0.364 (18) | 0.614 (3) | 0.0465 (10)* | |
| C5A | 0.335 (3) | 0.470 (15) | 0.463 (3) | 0.0465 (10)* | |
| C6A | 0.391 (3) | 0.281 (15) | 0.465 (4) | 0.0465 (10)* | |
| C7A | 0.419 (3) | 0.240 (17) | 0.390 (5) | 0.0465 (10)* | |
| C8A | 0.306 (3) | 0.618 (17) | 0.387 (4) | 0.0465 (10)* | |
| C9A | 0.333 (3) | 0.577 (15) | 0.312 (4) | 0.0465 (10)* | |
| C10A | 0.389 (3) | 0.388 (17) | 0.313 (3) | 0.0465 (10)* | |
| C11A | 0.386 (3) | 0.498 (19) | 0.161 (4) | 0.0465 (10)* | |
| C12A | 0.416 (3) | 0.349 (16) | 0.237 (4) | 0.0465 (10)* | |
| C13A | 0.472 (3) | 0.159 (16) | 0.237 (3) | 0.0465 (10)* | |
| C14A | 0.499 (3) | 0.122 (17) | 0.163 (4) | 0.0465 (10)* | |
| C15A | 0.469 (3) | 0.271 (16) | 0.087 (4) | 0.0465 (10)* | |
| C16A | 0.413 (3) | 0.460 (15) | 0.086 (4) | 0.0465 (10)* | |
| C17A | 0.303 (3) | 0.726 (16) | 0.236 (3) | 0.0465 (10)* | |
| C18A | 0.330 (3) | 0.687 (15) | 0.161 (4) | 0.0465 (10)* | |
| C19A | 0.300 (3) | 0.838 (16) | 0.085 (4) | 0.0465 (10)* | |
| C20A | 0.244 (3) | 1.027 (17) | 0.086 (3) | 0.0465 (10)* | |
| C21A | 0.217 (3) | 1.063 (17) | 0.161 (5) | 0.0465 (10)* | |
| C22A | 0.247 (3) | 0.91 (2) | 0.236 (4) | 0.0465 (10)* | |
| H23A | 0.41 (2) | 0.08 (10) | 0.67 (2) | 0.0760* | |
| H24A | 0.46 (3) | 0.01 (11) | 0.54 (3) | 0.0760* | |
| H25A | 0.27 (2) | 0.64 (9) | 0.54 (3) | 0.0760* | |
| H26A | 0.32 (2) | 0.39 (11) | 0.67 (3) | 0.0760* | |
| H27A | 0.46 (2) | 0.11 (10) | 0.39 (3) | 0.0760* | |
| H28A | 0.27 (2) | 0.75 (11) | 0.39 (3) | 0.0760* | |
| H29A | 0.49 (2) | 0.06 (9) | 0.29 (2) | 0.0760* | |
| H30A | 0.54 (2) | −0.01 (10) | 0.16 (3) | 0.0760* | |
| H31A | 0.49 (2) | 0.24 (11) | 0.04 (3) | 0.0760* | |
| H32A | 0.39 (3) | 0.56 (10) | 0.04 (2) | 0.0760* | |
| H33A | 0.32 (2) | 0.81 (10) | 0.03 (3) | 0.0760* | |
| H34A | 0.22 (2) | 1.13 (9) | 0.03 (3) | 0.0760* | |
| H35A | 0.18 (2) | 1.19 (11) | 0.16 (3) | 0.0760* | |
| H36A | 0.23 (2) | 0.94 (12) | 0.29 (3) | 0.0760* |
| C1—C2 | 1.40 (9) | C1A—C2A | 1.40 (8) |
| C1—C4 | 1.40 (9) | C1A—C4A | 1.40 (10) |
| C2—C6 | 1.40 (10) | C2A—C6A | 1.41 (9) |
| C3—C4 | 1.41 (9) | C3A—C4A | 1.39 (9) |
| C3—C5 | 1.41 (8) | C3A—C5A | 1.40 (8) |
| C5—C6 | 1.40 (9) | C5A—C6A | 1.40 (9) |
| C5—C8 | 1.41 (9) | C5A—C8A | 1.40 (9) |
| C6—C7 | 1.41 (8) | C6A—C7A | 1.41 (9) |
| C7—C10 | 1.41 (9) | C7A—C10A | 1.41 (10) |
| C8—C9 | 1.41 (8) | C8A—C9A | 1.40 (9) |
| C9—C10 | 1.41 (8) | C9A—C10A | 1.40 (10) |
| C9—C17 | 1.39 (10) | C9A—C17A | 1.40 (9) |
| C10—C12 | 1.40 (8) | C10A—C12A | 1.42 (7) |
| C11—C12 | 1.41 (10) | C11A—C12A | 1.40 (10) |
| C11—C16 | 1.40 (8) | C11A—C16A | 1.40 (9) |
| C11—C18 | 1.40 (9) | C11A—C18A | 1.40 (10) |
| C12—C13 | 1.40 (10) | C12A—C13A | 1.41 (9) |
| C13—C14 | 1.40 (8) | C13A—C14A | 1.38 (8) |
| C14—C15 | 1.41 (10) | C14A—C15A | 1.40 (10) |
| C15—C16 | 1.39 (9) | C15A—C16A | 1.40 (10) |
| C17—C18 | 1.40 (8) | C17A—C18A | 1.40 (8) |
| C17—C22 | 1.40 (10) | C17A—C22A | 1.38 (11) |
| C18—C19 | 1.41 (10) | C18A—C19A | 1.41 (9) |
| C19—C20 | 1.40 (10) | C19A—C20A | 1.40 (10) |
| C20—C21 | 1.41 (8) | C20A—C21A | 1.40 (9) |
| C21—C22 | 1.40 (10) | C21A—C22A | 1.40 (11) |
| C1—H23 | 1.0 (5) | C1A—H23A | 1.0 (3) |
| C2—H24 | 1.0 (4) | C2A—H24A | 1.0 (5) |
| C3—H25 | 0.9 (5) | C3A—H25A | 1.0 (4) |
| C4—H26 | 0.9 (5) | C4A—H26A | 1.0 (5) |
| C7—H27 | 0.9 (4) | C7A—H27A | 1.0 (4) |
| C8—H28 | 0.9 (6) | C8A—H28A | 0.9 (5) |
| C13—H29 | 0.9 (4) | C13A—H29A | 1.0 (3) |
| C14—H30 | 0.9 (4) | C14A—H30A | 1.0 (4) |
| C15—H31 | 0.9 (3) | C15A—H31A | 0.9 (4) |
| C16—H32 | 1.0 (5) | C16A—H32A | 0.9 (4) |
| C19—H33 | 0.9 (4) | C19A—H33A | 1.0 (4) |
| C20—H34 | 0.9 (5) | C20A—H34A | 1.0 (4) |
| C21—H35 | 1.0 (6) | C21A—H35A | 0.9 (5) |
| C22—H36 | 1.0 (5) | C22A—H36A | 1.0 (5) |
| C2—C1—C4 | 120 (5) | C2A—C1A—C4A | 120 (5) |
| C1—C2—C6 | 121 (5) | C1A—C2A—C6A | 119 (6) |
| C4—C3—C5 | 120 (5) | C4A—C3A—C5A | 120 (6) |
| C1—C4—C3 | 120 (4) | C1A—C4A—C3A | 120 (5) |
| C3—C5—C6 | 120 (6) | C3A—C5A—C6A | 120 (6) |
| C3—C5—C8 | 120 (5) | C3A—C5A—C8A | 120 (6) |
| C6—C5—C8 | 120 (5) | C6A—C5A—C8A | 120 (5) |
| C2—C6—C5 | 120 (5) | C2A—C6A—C5A | 121 (5) |
| C2—C6—C7 | 121 (6) | C2A—C6A—C7A | 120 (6) |
| C5—C6—C7 | 120 (6) | C5A—C6A—C7A | 120 (6) |
| C6—C7—C10 | 121 (5) | C6A—C7A—C10A | 120 (6) |
| C5—C8—C9 | 120 (5) | C5A—C8A—C9A | 120 (6) |
| C8—C9—C10 | 120 (6) | C8A—C9A—C10A | 120 (6) |
| C8—C9—C17 | 120 (6) | C8A—C9A—C17A | 119 (6) |
| C10—C9—C17 | 120 (5) | C10A—C9A—C17A | 120 (5) |
| C7—C10—C9 | 120 (5) | C7A—C10A—C9A | 120 (5) |
| C7—C10—C12 | 120 (5) | C7A—C10A—C12A | 120 (6) |
| C9—C10—C12 | 120 (6) | C9A—C10A—C12A | 120 (6) |
| C12—C11—C16 | 119 (6) | C12A—C11A—C16A | 120 (7) |
| C12—C11—C18 | 119 (5) | C12A—C11A—C18A | 120 (5) |
| C16—C11—C18 | 121 (6) | C16A—C11A—C18A | 120 (6) |
| C10—C12—C11 | 120 (6) | C10A—C12A—C11A | 120 (6) |
| C10—C12—C13 | 121 (6) | C10A—C12A—C13A | 120 (6) |
| C11—C12—C13 | 120 (6) | C11A—C12A—C13A | 120 (5) |
| C12—C13—C14 | 120 (6) | C12A—C13A—C14A | 120 (6) |
| C13—C14—C15 | 120 (5) | C13A—C14A—C15A | 121 (6) |
| C14—C15—C16 | 120 (5) | C14A—C15A—C16A | 120 (6) |
| C11—C16—C15 | 121 (6) | C11A—C16A—C15A | 120 (6) |
| C9—C17—C18 | 120 (6) | C9A—C17A—C18A | 120 (6) |
| C9—C17—C22 | 120 (6) | C9A—C17A—C22A | 120 (5) |
| C18—C17—C22 | 120 (6) | C18A—C17A—C22A | 121 (6) |
| C11—C18—C17 | 121 (6) | C11A—C18A—C17A | 121 (6) |
| C11—C18—C19 | 119 (6) | C11A—C18A—C19A | 120 (6) |
| C17—C18—C19 | 120 (6) | C17A—C18A—C19A | 120 (6) |
| C18—C19—C20 | 120 (6) | C18A—C19A—C20A | 119 (5) |
| C19—C20—C21 | 120 (7) | C19A—C20A—C21A | 121 (6) |
| C20—C21—C22 | 119 (6) | C20A—C21A—C22A | 119 (7) |
| C17—C22—C21 | 121 (5) | C17A—C22A—C21A | 120 (6) |
| C2—C1—H23 | 118 | C2A—C1A—H23A | 124 |
| C4—C1—H23 | 121 | C4A—C1A—H23A | 116 |
| C1—C2—H24 | 118 | C1A—C2A—H24A | 124 |
| C6—C2—H24 | 121 | C6A—C2A—H24A | 117 |
| C4—C3—H25 | 119 | C4A—C3A—H25A | 117 |
| C5—C3—H25 | 121 | C5A—C3A—H25A | 123 |
| C1—C4—H26 | 122 | C1A—C4A—H26A | 117 |
| C3—C4—H26 | 118 | C3A—C4A—H26A | 123 |
| C6—C7—H27 | 118 | C6A—C7A—H27A | 122 |
| C10—C7—H27 | 121 | C10A—C7A—H27A | 119 |
| C5—C8—H28 | 119 | C5A—C8A—H28A | 117 |
| C9—C8—H28 | 120 | C9A—C8A—H28A | 123 |
| C12—C13—H29 | 123 | C12A—C13A—H29A | 117 |
| C14—C13—H29 | 117 | C14A—C13A—H29A | 123 |
| C13—C14—H30 | 124 | C13A—C14A—H30A | 123 |
| C15—C14—H30 | 116 | C15A—C14A—H30A | 116 |
| C14—C15—H31 | 121 | C14A—C15A—H31A | 116 |
| C16—C15—H31 | 119 | C16A—C15A—H31A | 124 |
| C11—C16—H32 | 120 | C11A—C16A—H32A | 114 |
| C15—C16—H32 | 118 | C15A—C16A—H32A | 126 |
| C18—C19—H33 | 119 | C18A—C19A—H33A | 120 |
| C20—C19—H33 | 121 | C20A—C19A—H33A | 121 |
| C19—C20—H34 | 118 | C19A—C20A—H34A | 120 |
| C21—C20—H34 | 121 | C21A—C20A—H34A | 120 |
| C20—C21—H35 | 123 | C20A—C21A—H35A | 119 |
| C22—C21—H35 | 118 | C22A—C21A—H35A | 122 |
| C17—C22—H36 | 119 | C17A—C22A—H36A | 120 |
| C21—C22—H36 | 121 | C21A—C22A—H36A | 120 |
Acknowledgements
The authors thank the CCLRC Centre for Molecular Structure and Dynamics for studentship funding for PF and the EPSRC for grant No. GR/N07462/01.
References
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