organic compounds
A
of ethylenediammonium bis(3,5-dinitrobenzoate) and 3,5-dinitrobenzoic acidaColloids, Crystals and Interfaces Group, School of Chemical Engineering and Analytical Sciences, The University of Manchester, PO Box 88, Manchester M60 1QD, England
*Correspondence e-mail: h.jones-2@postgrad.manchester.ac.uk
The 2H10N22+·2C7H3N2O6−·2C7H4N2O6, has as the one 3,5-dinitrobenzoic acid molecule, one 3,5-dinitrobenzoate ion and one-half of the ethylenediammonium ion, as this cation lies on an inversion centre. Each ethylenediammonium ion is hydrogen bonded to four benzoate ions and two benzoic acid molecules.
of ethylenediammonium bis(3,5-dinitrobenzoate) and 3,5-dinitrobenzoic acid, namely ethylenediaminium–3,5-dinitrobenzoate–3,5-dinitrobenzoic acid (1/2/2), CComment
During experiments to measure the solubility of the monoclinic form of ethylenediammonium bis(3,5-dinitrobenzoate), cocrystals, (I), of this salt with 3,5-dinitrobenzoic acid were obtained.
To measure the solubility of ethylenediammonium bis(3,5-dinitrobenzoate) as a function of pH at 323 K, a suspension of the salt in water was prepared and allowed to equilibrate (Jones et al., 2005). In one experiment, the pH was found to be unusually low for a slurry of this salt and the experiment was stopped, but the sample continued to be held at 323 K. The cocrystals grew as pale-yellow prisms and were recovered on filtration of the slurry. Formation of these cocrystals was not observed in other solubility measurements at higher pH. Protonated 3,5-dinitrobenzoic acid is only expected to be present below pH 5 at 323 K (de Levie et al., 1999).
In the shows the structure and atom labelling.
both a protonated and a deprotonated 3,5-dinitrobenzoic acid molecule are present in the The ethylenediammonium ion lies on an inversion centre so that only one-half of the ion is in the Fig. 1Each ethylenediammonium ion is hydrogen bonded to four benzoate ions and two benzoic acid molecules (Fig. 2). The contains hydrogen-bonded chains of ethylenediammonium and benzoate ions along the a axis in the motif C22(6) (Fig. 3), hydrogen-bonded dimers of benzoate ions with benzoic acid molecules with an O—H⋯O hydrogen bond through atom H7 in the motif D11(2), and dimers of ethylenediammonium ions hydrogen bonded to the carbonyl group of a benzoic acid molecule in the motif D11(2). The benzoate ions in this structure all lie in one plane and the benzoic acid molecules all lie in another orientation.
Experimental
Monoclinic ethylenediaminium bis(3,5-dinitrobenzoate) was prepared by precipitation from a mixture of solutions of ethylenediamine (0.0145 mol) and 3,5-dinitrobenzoic acid (0.029 mol; supplied by Sigma–Aldrich, 99%) in ethanol (50 ml). An excess of monoclinic ethylenediammonium bis(3,5-dinitrobenzoate) (0.0145 mol) was suspended in water (40 ml) at 323 K with stirring. The solution pH was recorded as 3.79. After 20 h, stirring was stopped and the suspension was held at 323 K for 5 d. The suspension was filtered and pale-yellow prisms were observed in the powder of the monoclinic ethylenediammonium bis(3,5-dinitrobenzoate).
Crystal data
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Data collection
Refinement
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All H atoms attached to C and N atoms were fixed using a riding model, with C—H distances 0.93 Å (CArH) and 0.97 Å (CH2), and N—H distances 0.89 Å. The Uiso(H) values were set equal to 1.2Ueq of the for these H atoms. The hydroxy H atom was located in a Fourier difference map and the coordinates were refined with the O—H bond distance restrained to 0.82 (1) Å.
Data collection: COLLECT (Nonius, 2000); cell HKL SCALEPACK (Otwinowski & Minor, 1997); data reduction: HKL DENZO (Otwinowski & Minor, 1997) and SCALEPACK; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).
Supporting information
https://doi.org/10.1107/S1600536805015333/ng6162sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536805015333/ng6162Isup2.hkl
Data collection: Collect (Nonius, 2000); cell
HKL SCALEPACK (Otwinowski & Minor, 1997); data reduction: HKL DENZO (Otwinowski & Minor, 1997) and SCALEPACK; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).0.5C2H10N22+·C7H3N2O6−·C7H4N2O6 | Z = 2 |
Mr = 454.3 | F(000) = 466 |
Triclinic, P1 | Dx = 1.651 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 7.0452 (3) Å | Cell parameters from 5294 reflections |
b = 11.2345 (4) Å | θ = 1.0–25.0° |
c = 11.7627 (5) Å | µ = 0.15 mm−1 |
α = 91.838 (2)° | T = 293 K |
β = 96.230 (2)° | Prism, pale yellow |
γ = 98.710 (1)° | 0.3 × 0.2 × 0.1 mm |
V = 913.72 (6) Å3 |
Nonius KappaCCD diffractometer | 3241 independent reflections |
Radiation source: Enraf–Nonius FR590 | 2256 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.046 |
φ or ω scans? | θmax = 25.2°, θmin = 2.5° |
Absorption correction: multi-scan (Blessing, 1995) | h = −8→8 |
Tmin = 0.916, Tmax = 0.986 | k = −13→13 |
8852 measured reflections | l = −14→12 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.046 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.136 | w = 1/[σ2(Fo2) + (0.0776P)2] where P = (Fo2 + 2Fc2)/3 |
S = 1.01 | (Δ/σ)max < 0.001 |
3241 reflections | Δρmax = 0.20 e Å−3 |
294 parameters | Δρmin = −0.21 e Å−3 |
1 restraint | Extinction correction: SHELXL97, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.016 (4) |
Experimental. Solution pH was measured using an Accumet Basic AB15 pH meter with an Accumet glass calomel pH electrode and an ATC probe to compensate for temperature changes. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.3739 (2) | 0.04198 (13) | 0.75723 (14) | 0.0508 (4) | |
O2 | 0.6632 (3) | −0.01493 (13) | 0.76044 (15) | 0.0553 (5) | |
O3 | 0.7755 (3) | −0.38263 (14) | 0.94862 (14) | 0.0596 (5) | |
O4 | 0.6306 (3) | −0.42815 (15) | 1.09778 (14) | 0.0648 (5) | |
O5 | 0.0621 (3) | −0.26099 (18) | 1.15926 (16) | 0.0718 (6) | |
O6 | −0.0276 (3) | −0.12294 (18) | 1.05344 (18) | 0.0724 (6) | |
O7 | 0.5246 (3) | 0.24130 (15) | 0.69250 (16) | 0.0590 (5) | |
O8 | 0.2299 (3) | 0.26663 (15) | 0.62078 (17) | 0.0680 (5) | |
O9 | 0.1253 (3) | 0.66997 (17) | 0.50938 (18) | 0.0741 (6) | |
O10 | 0.3350 (3) | 0.82267 (16) | 0.5700 (2) | 0.0889 (7) | |
O11 | 0.9653 (3) | 0.76827 (14) | 0.73491 (15) | 0.0618 (5) | |
O12 | 1.0348 (3) | 0.58912 (16) | 0.75615 (16) | 0.0638 (5) | |
N1 | 0.6524 (3) | −0.37047 (16) | 1.01241 (16) | 0.0475 (5) | |
N2 | 0.0813 (3) | −0.19415 (18) | 1.07990 (18) | 0.0520 (5) | |
N3 | 0.2801 (3) | 0.71433 (18) | 0.55839 (17) | 0.0537 (5) | |
N4 | 0.9221 (3) | 0.65764 (17) | 0.72899 (16) | 0.0455 (5) | |
N5 | 0.9846 (3) | 0.05043 (17) | 0.65242 (17) | 0.0571 (6) | |
H5A | 0.8995 | 0.0265 | 0.7009 | 0.069* | |
H5B | 0.9863 | 0.1285 | 0.6413 | 0.069* | |
H5C | 1.1016 | 0.0382 | 0.6816 | 0.069* | |
C1 | 0.4465 (3) | −0.11491 (17) | 0.87777 (17) | 0.0371 (5) | |
C2 | 0.5689 (3) | −0.19825 (17) | 0.90467 (17) | 0.0394 (5) | |
H2 | 0.681 | −0.1975 | 0.8694 | 0.047* | |
C3 | 0.5229 (3) | −0.28228 (18) | 0.98423 (17) | 0.0403 (5) | |
C4 | 0.3618 (3) | −0.28528 (19) | 1.04054 (18) | 0.0433 (6) | |
H4 | 0.332 | −0.3427 | 1.0937 | 0.052* | |
C5 | 0.2463 (3) | −0.19926 (18) | 1.01452 (17) | 0.0400 (5) | |
C6 | 0.2833 (3) | −0.11494 (18) | 0.93258 (18) | 0.0395 (5) | |
H6 | 0.1998 | −0.0598 | 0.9151 | 0.047* | |
C7 | 0.5006 (3) | −0.02253 (17) | 0.79096 (18) | 0.0403 (5) | |
C8 | 0.4724 (3) | 0.43735 (17) | 0.65036 (16) | 0.0368 (5) | |
C9 | 0.3459 (3) | 0.51274 (18) | 0.60851 (17) | 0.0391 (5) | |
H9 | 0.2179 | 0.482 | 0.5824 | 0.047* | |
C10 | 0.4134 (3) | 0.63433 (18) | 0.60626 (17) | 0.0404 (5) | |
C11 | 0.5990 (3) | 0.68435 (18) | 0.64562 (17) | 0.0400 (5) | |
H11 | 0.6405 | 0.7669 | 0.6452 | 0.048* | |
C12 | 0.7218 (3) | 0.60689 (18) | 0.68589 (17) | 0.0375 (5) | |
C13 | 0.6631 (3) | 0.48361 (18) | 0.68852 (17) | 0.0382 (5) | |
H13 | 0.7496 | 0.4332 | 0.7152 | 0.046* | |
C14 | 0.3964 (4) | 0.30531 (19) | 0.65396 (18) | 0.0432 (6) | |
C15 | 0.9287 (3) | −0.01948 (18) | 0.54167 (18) | 0.0421 (5) | |
H15A | 0.8006 | −0.007 | 0.5102 | 0.051* | |
H15B | 0.9249 | −0.1048 | 0.5538 | 0.051* | |
H7 | 0.469 (5) | 0.1743 (18) | 0.709 (3) | 0.123 (14)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0486 (11) | 0.0417 (8) | 0.0650 (10) | 0.0101 (8) | 0.0127 (8) | 0.0141 (7) |
O2 | 0.0492 (11) | 0.0509 (9) | 0.0700 (11) | 0.0061 (8) | 0.0237 (9) | 0.0159 (8) |
O3 | 0.0678 (13) | 0.0629 (11) | 0.0573 (11) | 0.0291 (9) | 0.0207 (10) | 0.0089 (8) |
O4 | 0.0793 (14) | 0.0686 (11) | 0.0535 (11) | 0.0243 (10) | 0.0148 (9) | 0.0255 (8) |
O5 | 0.0613 (13) | 0.0999 (14) | 0.0587 (12) | 0.0094 (10) | 0.0249 (10) | 0.0247 (10) |
O6 | 0.0568 (13) | 0.0806 (13) | 0.0898 (15) | 0.0248 (10) | 0.0301 (11) | 0.0154 (10) |
O7 | 0.0558 (12) | 0.0416 (9) | 0.0771 (12) | 0.0025 (8) | 0.0011 (9) | 0.0145 (8) |
O8 | 0.0566 (13) | 0.0474 (9) | 0.0902 (14) | −0.0091 (9) | −0.0146 (10) | 0.0145 (8) |
O9 | 0.0581 (13) | 0.0767 (13) | 0.0840 (14) | 0.0186 (10) | −0.0189 (11) | 0.0052 (10) |
O10 | 0.0967 (18) | 0.0460 (12) | 0.1208 (19) | 0.0235 (11) | −0.0197 (14) | 0.0052 (10) |
O11 | 0.0587 (12) | 0.0467 (10) | 0.0724 (12) | −0.0097 (8) | −0.0015 (9) | 0.0027 (8) |
O12 | 0.0422 (11) | 0.0674 (11) | 0.0818 (13) | 0.0111 (9) | 0.0032 (9) | 0.0066 (9) |
N1 | 0.0557 (14) | 0.0459 (11) | 0.0427 (11) | 0.0130 (9) | 0.0059 (10) | 0.0060 (8) |
N2 | 0.0418 (13) | 0.0608 (13) | 0.0524 (13) | 0.0015 (10) | 0.0105 (10) | 0.0023 (10) |
N3 | 0.0579 (15) | 0.0534 (13) | 0.0521 (12) | 0.0192 (11) | 0.0023 (11) | 0.0025 (9) |
N4 | 0.0413 (12) | 0.0497 (12) | 0.0449 (11) | 0.0020 (10) | 0.0083 (9) | 0.0036 (8) |
N5 | 0.0560 (14) | 0.0594 (12) | 0.0518 (12) | −0.0124 (10) | 0.0190 (10) | −0.0014 (9) |
C1 | 0.0410 (13) | 0.0337 (10) | 0.0355 (11) | 0.0020 (9) | 0.0051 (9) | −0.0013 (8) |
C2 | 0.0416 (14) | 0.0407 (11) | 0.0364 (12) | 0.0055 (10) | 0.0084 (10) | −0.0011 (9) |
C3 | 0.0445 (14) | 0.0409 (11) | 0.0361 (12) | 0.0086 (10) | 0.0046 (10) | 0.0020 (9) |
C4 | 0.0466 (15) | 0.0454 (12) | 0.0368 (12) | 0.0013 (10) | 0.0072 (10) | 0.0036 (9) |
C5 | 0.0350 (13) | 0.0474 (12) | 0.0369 (12) | 0.0012 (10) | 0.0093 (10) | −0.0024 (9) |
C6 | 0.0379 (13) | 0.0394 (11) | 0.0407 (12) | 0.0051 (9) | 0.0040 (10) | −0.0014 (8) |
C7 | 0.0431 (15) | 0.0329 (11) | 0.0438 (13) | −0.0003 (10) | 0.0092 (11) | −0.0014 (9) |
C8 | 0.0415 (14) | 0.0384 (11) | 0.0298 (11) | 0.0020 (9) | 0.0066 (9) | 0.0032 (8) |
C9 | 0.0379 (13) | 0.0452 (12) | 0.0328 (11) | 0.0020 (10) | 0.0041 (9) | −0.0004 (8) |
C10 | 0.0472 (14) | 0.0430 (12) | 0.0327 (11) | 0.0117 (10) | 0.0055 (10) | 0.0020 (8) |
C11 | 0.0482 (15) | 0.0356 (11) | 0.0361 (12) | 0.0048 (10) | 0.0069 (10) | 0.0015 (8) |
C12 | 0.0387 (13) | 0.0415 (11) | 0.0316 (11) | 0.0011 (9) | 0.0077 (9) | 0.0020 (8) |
C13 | 0.0444 (14) | 0.0393 (11) | 0.0320 (11) | 0.0069 (10) | 0.0075 (10) | 0.0039 (8) |
C14 | 0.0467 (16) | 0.0424 (12) | 0.0385 (12) | 0.0002 (11) | 0.0041 (11) | 0.0059 (9) |
C15 | 0.0437 (14) | 0.0389 (11) | 0.0434 (12) | 0.0004 (10) | 0.0103 (10) | 0.0060 (9) |
O1—C7 | 1.271 (3) | C1—C2 | 1.388 (3) |
O2—C7 | 1.229 (3) | C1—C7 | 1.516 (3) |
O3—N1 | 1.226 (2) | C2—C3 | 1.379 (3) |
O4—N1 | 1.224 (2) | C2—H2 | 0.93 |
O5—N2 | 1.223 (3) | C3—C4 | 1.371 (3) |
O6—N2 | 1.215 (3) | C4—C5 | 1.376 (3) |
O7—C14 | 1.292 (3) | C4—H4 | 0.93 |
O7—H7 | 0.833 (10) | C5—C6 | 1.390 (3) |
O8—C14 | 1.205 (3) | C6—H6 | 0.93 |
O9—N3 | 1.204 (3) | C8—C9 | 1.384 (3) |
O10—N3 | 1.219 (3) | C8—C13 | 1.386 (3) |
O11—N4 | 1.232 (2) | C8—C14 | 1.502 (3) |
O12—N4 | 1.213 (2) | C9—C10 | 1.379 (3) |
N1—C3 | 1.468 (3) | C9—H9 | 0.93 |
N2—C5 | 1.469 (3) | C10—C11 | 1.367 (3) |
N3—C10 | 1.477 (3) | C11—C12 | 1.377 (3) |
N4—C12 | 1.468 (3) | C11—H11 | 0.93 |
N5—C15 | 1.483 (3) | C12—C13 | 1.386 (3) |
N5—H5A | 0.89 | C13—H13 | 0.93 |
N5—H5B | 0.89 | C15—C15i | 1.506 (4) |
N5—H5C | 0.89 | C15—H15A | 0.97 |
C1—C6 | 1.377 (3) | C15—H15B | 0.97 |
C14—O7—H7 | 109 (3) | C1—C6—C5 | 118.5 (2) |
O4—N1—O3 | 123.8 (2) | C1—C6—H6 | 120.7 |
O4—N1—C3 | 118.1 (2) | C5—C6—H6 | 120.7 |
O3—N1—C3 | 118.10 (18) | O2—C7—O1 | 125.5 (2) |
O6—N2—O5 | 123.3 (2) | O2—C7—C1 | 117.6 (2) |
O6—N2—C5 | 118.5 (2) | O1—C7—C1 | 116.8 (2) |
O5—N2—C5 | 118.1 (2) | C9—C8—C13 | 120.38 (19) |
O9—N3—O10 | 123.6 (2) | C9—C8—C14 | 118.1 (2) |
O9—N3—C10 | 118.95 (19) | C13—C8—C14 | 121.48 (19) |
O10—N3—C10 | 117.5 (2) | C10—C9—C8 | 118.6 (2) |
O12—N4—O11 | 124.0 (2) | C10—C9—H9 | 120.7 |
O12—N4—C12 | 118.64 (18) | C8—C9—H9 | 120.7 |
O11—N4—C12 | 117.41 (19) | C11—C10—C9 | 123.0 (2) |
C15—N5—H5A | 109.5 | C11—C10—N3 | 118.33 (19) |
C15—N5—H5B | 109.5 | C9—C10—N3 | 118.7 (2) |
H5A—N5—H5B | 109.5 | C10—C11—C12 | 116.98 (19) |
C15—N5—H5C | 109.5 | C10—C11—H11 | 121.5 |
H5A—N5—H5C | 109.5 | C12—C11—H11 | 121.5 |
H5B—N5—H5C | 109.5 | C11—C12—C13 | 122.6 (2) |
C6—C1—C2 | 119.86 (19) | C11—C12—N4 | 118.40 (18) |
C6—C1—C7 | 121.5 (2) | C13—C12—N4 | 119.0 (2) |
C2—C1—C7 | 118.6 (2) | C8—C13—C12 | 118.3 (2) |
C3—C2—C1 | 119.4 (2) | C8—C13—H13 | 120.8 |
C3—C2—H2 | 120.3 | C12—C13—H13 | 120.8 |
C1—C2—H2 | 120.3 | O8—C14—O7 | 125.3 (2) |
C4—C3—C2 | 122.5 (2) | O8—C14—C8 | 120.6 (2) |
C4—C3—N1 | 118.23 (19) | O7—C14—C8 | 114.1 (2) |
C2—C3—N1 | 119.3 (2) | N5—C15—C15i | 110.4 (2) |
C3—C4—C5 | 116.8 (2) | N5—C15—H15A | 109.6 |
C3—C4—H4 | 121.6 | C15i—C15—H15A | 109.6 |
C5—C4—H4 | 121.6 | N5—C15—H15B | 109.6 |
C4—C5—C6 | 122.9 (2) | C15i—C15—H15B | 109.6 |
C4—C5—N2 | 118.01 (19) | H15A—C15—H15B | 108.1 |
C6—C5—N2 | 119.0 (2) |
Symmetry code: (i) −x+2, −y, −z+1. |
D—H···A | D—H | H···A | D···A | D—H···A |
O7—H7···O1 | 0.83 (1) | 1.68 (1) | 2.507 (2) | 173 (4) |
N5—H5A···O2 | 0.89 | 1.88 | 2.732 (3) | 161 |
N5—H5B···O8ii | 0.89 | 2.17 | 2.820 (3) | 129 |
N5—H5C···O1ii | 0.89 | 2.02 | 2.899 (3) | 170 |
Symmetry code: (ii) x+1, y, z. |
Footnotes
‡Current address: Pharmaceutical R&D, Pfizer Global R&D (IPC 435), Ramsgate Road, Sandwich, Kent CT13 9NJ, England.
Acknowledgements
The authors thank Sanofi–Aventis Ltd for funding.
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