metal-organic compounds
Creatininium dihydrogenarsenate
aDepartment of Chemistry, University of Aberdeen, Meston Walk, Aberdeen AB24 3UE, Scotland
*Correspondence e-mail: w.harrison@abdn.ac.uk
The title compound, (C4H8N3O)[H2AsO4], contains a network of creatininium cations and dihydrogenarsenate anions [mean As—O = 1.681 (2) Å]. The crystal packing involves anion-to-anion O—H⋯O, cation-to-anion N—H⋯O and cation-to-cation N—H⋯O hydrogen bonds, resulting in a chain structure.
Comment
The title compound, (I) (Fig. 1), was prepared as part of our ongoing structural studies of hydrogen-bonding interactions in protonated-amine (di)hydrogen arsenate molecular salts (Wilkinson & Harrison, 2004; Todd & Harrison, 2005). The [H2AsO4]− dihydrogenarsenate group in (I) shows a normal tetrahedral geometry [mean As—O = 1.681 (2) Å], with the protonated As1—O3 and As1—O4 vertices showing their usual lengthening relative to the unprotonated As1—O1 and As1—O2 bonds, which have formal partial double-bond character (Table 1).
The creatininium cation is approximately planar [r.m.s. deviation for the non-H atoms = 0.031 Å; maximum deviation from the mean plane = 0.0597 (16) Å for N2]. The three C1—N bond distances (Table 1) are distinctly different, with C1—N1 much longer than the other two. This configuration perhaps indicates that the of the molecule, with a formal double bond in the C1—N1 position and a formal positive charge on N1, is of less importance than the forms that place the double bond in the C1—N2 and C1—N3 positions and the positive charge on the respective N atoms. However, the rather short C2—N1 bond length suggests that some conjugation involving the C2=O5 group may also be significant. In the structure of creatininium dipicolinate monohydrate (Moghimi et al., 2004), the creatininium cation is constrained to be planar by mirror symmetry and an almost identical pattern of C—N bond lengths is observed.
As well as electrostatic attractions, the component species in (I) interact by means of a network of cation-to-anion N—H⋯O, anion-to-anion O—H⋯O and cation-to-cation N—H⋯O hydrogen bonds (Table 2). The [H2AsO4]− units are linked into polymeric chains (Fig. 2) propagating along [100] by way of inversion-generated pairs of O3—H1⋯O2i and O4—H2⋯O1ii bonds (see Table 2 for symmetry codes). In graph-set notation (Bernstein et al., 1995), each inter-tetrahedral linking motif corresponds to an R22(8) loop. The As1⋯As1i and As1⋯As1ii separations are 4.0608 (3) and 3.9286 (3) Å, respectively.
The organic species interacts with the dihydrogenarsenate chains by way of two N—H⋯O hydrogen bonds (Fig. 1), such that both sides of each [100] chain are decorated by the creatininium cations. The third creatininium N—H group is involved in a cation-to-cation N—H⋯O bond (Fig. 2) that appears to reinforce the chains. Overall, a chain structure along the a axis arises for (I), as shown in Fig. 3. Atoms O1 and O2 accept two hydrogen bonds each (bond angle sums about these atoms are 358.3 and 359.3°, respectively). A PLATON (Spek, 2003) analysis of (I) flagged the possible presence of two short C—H⋯O interactions (Table 2), although their structural significance is not clear.
PLATON also flagged a short C2⋯C2v [symmetry code: (v) −x, 1 − y, −z] intermolecular contact of 3.158 (3) Å, compared with a van der Waals radius sum of 3.40 Å (Bondi, 1964). This close contact might arise as part of a carbonyl–carbonyl interaction, as described by Allen et al. (1998). In the notation of these workers, the situation in (I) corresponds to a `sheared antiparallel' or motif II interaction (Fig. 4), generated by a centre of symmetry. Here, the O5=C2⋯O5v and C2=O5⋯C2v interaction angles are 100.50 (14) and 79.50 (13)°, respectively, compared with the nominal values of 2 × 90° for a perfect rectangle of the four constituent atoms. This is slightly more distorted than the mean O=C⋯O and C=O⋯C angles of 96.5 (4) and 83.5 (4)° based on 553 contributors, as cited by Allen et al. (1998). The C2⋯O5v separation of 3.147 (3) Å in (I) is slightly less than the C⋯O van der Waals separation of 3.22 Å.
The dihydrogenarsenate chain motif in (I) replicates that seen in t-butylammonium dihydrogenarsenate (Wilkinson & Harrison, 2004). However, a different cation-to-anion hydrogen-bonding scheme leads to a layered structure in this phase. The intrachain As⋯As separations of 4.2662 (3) and 4.3002 (4) Å in the t-butylammonium compound are significantly larger than those seen in (I).
Experimental
A 0.5 M aqueous creatine solution (10 ml) was added to a 0.5 M aqueous H3AsO4 solution (20 ml) to result in a clear solution. A mass of block-like crystals of (I) grew as the water evaporated over the course of a few days. The creatine transformed to creatinine under the low-pH conditions of the reaction.
Crystal data
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Refinement
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The hydroxy H atoms were found in difference maps and refined as riding on their carrier O atoms in their as-found relative positions. The H atoms bonded to C and N atoms were placed in idealized positions (C—H = 0.96–0.97 Å and N—H = 0.86 Å) and refined as riding, allowing for 3 group. The constraint Uiso(H) = 1.2Ueq(carrier) or 1.5Ueq(methyl carrier) was applied.
of the –CHData collection: SMART (Bruker, 1999); cell SAINT (Bruker, 1999); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: SHELXL97.
Supporting information
https://doi.org/10.1107/S1600536805016144/ob6525sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536805016144/ob6525Isup2.hkl
Data collection: SMART (Bruker, 1999); cell
SAINT (Bruker, 1999); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: SHELXL97.(C4H8N3O)[H2AsO4] | F(000) = 512 |
Mr = 255.07 | Dx = 1.897 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 5020 reflections |
a = 7.3576 (3) Å | θ = 2.6–32.2° |
b = 10.4263 (5) Å | µ = 3.80 mm−1 |
c = 11.9471 (5) Å | T = 293 K |
β = 102.908 (1)° | Chunk, colourless |
V = 893.33 (7) Å3 | 0.49 × 0.33 × 0.24 mm |
Z = 4 |
Bruker SMART 1000 CCD diffractometer | 3202 independent reflections |
Radiation source: fine-focus sealed tube | 2403 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.029 |
ω scans | θmax = 32.5°, θmin = 2.6° |
Absorption correction: multi-scan (SADABS; Bruker, 1999) | h = −11→11 |
Tmin = 0.223, Tmax = 0.401 | k = −15→15 |
11192 measured reflections | l = −17→18 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.027 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.069 | H-atom parameters constrained |
S = 1.00 | w = 1/[σ2(Fo2) + (0.0381P)2] where P = (Fo2 + 2Fc2)/3 |
3202 reflections | (Δ/σ)max = 0.002 |
119 parameters | Δρmax = 0.59 e Å−3 |
0 restraints | Δρmin = −0.52 e Å−3 |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
As1 | 0.26213 (2) | 0.928771 (15) | 0.019997 (18) | 0.03047 (7) | |
O1 | 0.46360 (18) | 0.87172 (12) | 0.09239 (13) | 0.0373 (3) | |
O2 | 0.08787 (18) | 0.82749 (11) | 0.01759 (13) | 0.0398 (3) | |
O3 | 0.2283 (2) | 1.06885 (12) | 0.08753 (15) | 0.0438 (3) | |
H1 | 0.1274 | 1.1029 | 0.0514 | 0.053* | |
O4 | 0.2634 (2) | 0.96492 (14) | −0.11868 (13) | 0.0444 (3) | |
H2 | 0.3451 | 1.0179 | −0.1198 | 0.053* | |
C1 | 0.3742 (2) | 0.54747 (15) | 0.13831 (17) | 0.0311 (4) | |
C2 | 0.0711 (3) | 0.51202 (17) | 0.13441 (17) | 0.0338 (4) | |
C3 | 0.1748 (3) | 0.38752 (17) | 0.16057 (18) | 0.0355 (4) | |
H6 | 0.1640 | 0.3537 | 0.2344 | 0.043* | |
H7 | 0.1294 | 0.3240 | 0.1016 | 0.043* | |
C4 | 0.5201 (3) | 0.33417 (18) | 0.1848 (2) | 0.0446 (5) | |
H8 | 0.4793 | 0.2528 | 0.1506 | 0.067* | |
H9 | 0.5636 | 0.3239 | 0.2662 | 0.067* | |
H10 | 0.6196 | 0.3664 | 0.1527 | 0.067* | |
N1 | 0.2003 (2) | 0.60209 (13) | 0.12221 (14) | 0.0316 (3) | |
H3 | 0.1761 | 0.6817 | 0.1067 | 0.038* | |
N2 | 0.5212 (2) | 0.61337 (15) | 0.12952 (17) | 0.0430 (4) | |
H4 | 0.6280 | 0.5763 | 0.1395 | 0.052* | |
H5 | 0.5112 | 0.6939 | 0.1138 | 0.052* | |
N3 | 0.3657 (2) | 0.42406 (13) | 0.16181 (15) | 0.0345 (3) | |
O5 | −0.0931 (2) | 0.53087 (16) | 0.12300 (15) | 0.0489 (4) |
U11 | U22 | U33 | U12 | U13 | U23 | |
As1 | 0.02924 (9) | 0.01985 (8) | 0.03993 (12) | −0.00035 (7) | 0.00263 (7) | 0.00260 (7) |
O1 | 0.0290 (6) | 0.0275 (6) | 0.0517 (9) | 0.0024 (5) | 0.0011 (6) | 0.0088 (6) |
O2 | 0.0305 (6) | 0.0231 (5) | 0.0629 (10) | −0.0022 (5) | 0.0042 (6) | 0.0075 (6) |
O3 | 0.0382 (7) | 0.0294 (6) | 0.0582 (10) | 0.0038 (6) | −0.0012 (7) | −0.0102 (6) |
O4 | 0.0428 (8) | 0.0446 (7) | 0.0421 (9) | −0.0107 (6) | 0.0013 (7) | 0.0051 (6) |
C1 | 0.0325 (8) | 0.0231 (7) | 0.0364 (10) | 0.0023 (6) | 0.0051 (7) | 0.0003 (6) |
C2 | 0.0349 (9) | 0.0316 (8) | 0.0351 (10) | −0.0010 (7) | 0.0085 (8) | −0.0012 (7) |
C3 | 0.0384 (10) | 0.0263 (7) | 0.0418 (11) | −0.0038 (7) | 0.0089 (8) | 0.0015 (7) |
C4 | 0.0440 (11) | 0.0260 (8) | 0.0602 (14) | 0.0085 (8) | 0.0039 (10) | 0.0030 (8) |
N1 | 0.0298 (7) | 0.0230 (6) | 0.0418 (9) | 0.0031 (5) | 0.0077 (6) | 0.0028 (6) |
N2 | 0.0282 (8) | 0.0269 (7) | 0.0722 (13) | 0.0026 (6) | 0.0077 (8) | 0.0076 (8) |
N3 | 0.0356 (8) | 0.0216 (6) | 0.0449 (10) | 0.0017 (6) | 0.0062 (7) | 0.0021 (6) |
O5 | 0.0340 (7) | 0.0476 (8) | 0.0678 (11) | 0.0002 (7) | 0.0176 (7) | 0.0017 (8) |
As1—O1 | 1.6512 (13) | C2—C3 | 1.503 (3) |
As1—O2 | 1.6563 (12) | C3—N3 | 1.452 (2) |
As1—O4 | 1.7013 (15) | C3—H6 | 0.9700 |
As1—O3 | 1.7134 (13) | C3—H7 | 0.9700 |
O3—H1 | 0.8488 | C4—N3 | 1.451 (2) |
O4—H2 | 0.8185 | C4—H8 | 0.9600 |
C1—N2 | 1.305 (2) | C4—H9 | 0.9600 |
C1—N3 | 1.321 (2) | C4—H10 | 0.9600 |
C1—N1 | 1.374 (2) | N1—H3 | 0.8600 |
C2—O5 | 1.202 (2) | N2—H4 | 0.8600 |
C2—N1 | 1.367 (2) | N2—H5 | 0.8600 |
O1—As1—O2 | 112.36 (6) | C2—C3—H7 | 111.2 |
O1—As1—O4 | 112.96 (7) | H6—C3—H7 | 109.1 |
O2—As1—O4 | 107.28 (7) | N3—C4—H8 | 109.5 |
O1—As1—O3 | 105.56 (7) | N3—C4—H9 | 109.5 |
O2—As1—O3 | 111.00 (7) | H8—C4—H9 | 109.5 |
O4—As1—O3 | 107.62 (8) | N3—C4—H10 | 109.5 |
As1—O3—H1 | 108.6 | H8—C4—H10 | 109.5 |
As1—O4—H2 | 109.2 | H9—C4—H10 | 109.5 |
N2—C1—N3 | 127.51 (17) | C2—N1—C1 | 110.36 (14) |
N2—C1—N1 | 122.20 (16) | C2—N1—H3 | 124.8 |
N3—C1—N1 | 110.29 (15) | C1—N1—H3 | 124.8 |
O5—C2—N1 | 125.52 (18) | C1—N2—H4 | 120.0 |
O5—C2—C3 | 128.01 (18) | C1—N2—H5 | 120.0 |
N1—C2—C3 | 106.45 (15) | H4—N2—H5 | 120.0 |
N3—C3—C2 | 102.73 (14) | C1—N3—C4 | 126.66 (16) |
N3—C3—H6 | 111.2 | C1—N3—C3 | 110.16 (15) |
C2—C3—H6 | 111.2 | C4—N3—C3 | 123.18 (15) |
N3—C3—H7 | 111.2 | ||
O5—C2—C3—N3 | 179.0 (2) | N2—C1—N3—C4 | 0.9 (3) |
N1—C2—C3—N3 | 0.8 (2) | N1—C1—N3—C4 | −179.61 (18) |
O5—C2—N1—C1 | −178.5 (2) | N2—C1—N3—C3 | −178.4 (2) |
C3—C2—N1—C1 | −0.2 (2) | N1—C1—N3—C3 | 1.0 (2) |
N2—C1—N1—C2 | 179.00 (19) | C2—C3—N3—C1 | −1.1 (2) |
N3—C1—N1—C2 | −0.5 (2) | C2—C3—N3—C4 | 179.53 (18) |
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H1···O2i | 0.85 | 1.77 | 2.618 (2) | 177 |
O4—H2···O1ii | 0.82 | 1.79 | 2.598 (2) | 169 |
N1—H3···O2 | 0.86 | 1.89 | 2.703 (2) | 158 |
N2—H4···O5iii | 0.86 | 2.16 | 2.983 (2) | 161 |
N2—H5···O1 | 0.86 | 1.89 | 2.747 (2) | 172 |
C3—H6···O1iv | 0.97 | 2.46 | 3.334 (2) | 149 |
C3—H7···O2v | 0.97 | 2.46 | 3.384 (2) | 159 |
Symmetry codes: (i) −x, −y+2, −z; (ii) −x+1, −y+2, −z; (iii) x+1, y, z; (iv) −x+1/2, y−1/2, −z+1/2; (v) −x, −y+1, −z. |
Acknowledgements
HSW thanks the Carnegie Trust for the Universities of Scotland for an undergraduate vacation studentship.
References
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