organic compounds
Benzylammonium 2,4-bis(dicyanomethylene)-2,3-dihydroisoindolide
aSchool of Chemical Sciences, Dublin City University, Dublin 9, Ireland, and bDepartment of Chemistry, University of Aberdeen, Meston Walk, Aberdeen AB24 3UE, Scotland
*Correspondence e-mail: r.a.howie@abdn.ac.uk
The cation and anion of the title salt, C7H10N+.C14H4N5−, are both bisected by a crystallographic mirror plane. Extensive hydrogen bonding, with the R66(28) graph-set motif, connects the ions into layers.
Comment
The title compound, (I), is a by-product of the reaction between ammonium salt (II) and benzylamine, producing the amidine, (III), in which the cation of the original salt has been replaced by benzylammonium. The anion and cation of (I), along with indications of the to which they are subject, are shown in Figs. 1 and 2, respectively.
In the anion, the lengths of the N1—C1 and C1—C5 bonds and their symmetry-related equivalents [1.363 (2) and 1.382 (3) Å, respectively] are surprisingly long for their type, which is taken as an indication of their involvement in the delocalization of the negative charge on the anion. Another feature of the structure of the anion is the dihedral angle of 5.77 (15)° between the plane of the five-membered ring and that of the C(CN)2 group. In this case, the displacements of the atoms of both C(CN)2 groups are all in the same sense relative to the plane of the five-membered ring. The only notable feature of the structure of the cation is the dihedral angle of 90.00 (11)° between the plane defined by atoms N4/C8/C9 and that of the benzene ring. The most striking feature of the structure of (I) is the inter-ion connectivity created by the N—H⋯N hydrogen bonds given in Table 1. These hydrogen bonds, which involve all three of the H atoms of the NH3 group of the benzylammonium cation with three of the five N atoms of the anion as acceptors, create sheets of ions parallel to (10), interconnected as shown in Fig. 3. The hydrogen-bond motif, in the graph-set notation of Bernstein et al. (1995), which recurs throughout the layer is R66(28) and is exemplified in Fig. 3 by the connectivity of the species Aiv/Cviii/Av/Cix/Avi/Cx. The disposition of the H atoms in the NH3 group demands some degree of depth or thickness within the layers, and this requirement is met in such a way as to accommodate the first of the π–π overlaps given in Table 2 and exemplified in Fig. 3 by the situation for Cviii and Avi. The second π–π overlap given in Table 2 occurs between layers and involves rings which are related to one another by a crystallographic twofold axis which, because of the of the ring and the anion of which it is part, can be expressed equally as a crystallographic centre of symmetry. This last is also the relationship between neighbouring layers.
Experimental
Heating a solution of (II) (0.50 g, 1.9 mmol) and benzylamine (0.21 g, 1.9 mmol) in 1,4-dioxan (30 ml) under reflux for 4 h resulted in precipitation of an orange solid which, when filtered off, dried under vacuum and recrystallized from dimethylformamide–ethanol (10:90), yielded N-benzyl-2-cyano-2-(3-dicyanomethylene-2,3-dihydroisoindolylidene)acetamidine, (III) [0.31 g, 46%; m.p. 573–574 K (decomposition)]. Evaporation of the filtrate to dryness and recrystallization from acetonitrile gave (I) (0.19 g, 28%; m.p. 571–572 K). νmax: 3134, 3094, 2612, 2209, 1596, 1586, 1504, 1381, 1310, 1248, 1129, 1098, 952, 848, 754 and 708 cm−1; λmax (CH3CN): 496 (e = 32 597 dm3 mol−l cm−l), 464 (32 393), 342 (13 124) and 240 nm (28 786); 1H NMR (400 MHz, DMSO-d6, δ): 8.52 (br m, 5H, two benzo H and NH3), 7.65 (m, 2H, benzo H), 7.45 (m, 5H, phenyl H) and 4.5 (s, 2H, CH2). On addition of D2O to the NMR sample, the multiplet at 8.52 p.p.m. was no longer broad and integrated for 2 protons. 13C NMR (100 MHz, DMSO-d6, δ): 42.28 (CH2), 53.89 [=C(CN)2], 116.24 and 117.19 (CN), 122.83, 128.45, 128.57, 128.76, 131.27, 133.83 and 137.38 (aromatic C) and 171.97 [C=C(CN)2]. Analysis found: C 72.15, H 4.12, N 24.52%; C21H14N6 requires: C 71.99, H 4.02, N 23.99%.
Crystal data
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Data collection
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Refinement
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In this structure, both ions are bisected by a crystallographic mirror plane. The only atoms in general positions and replicated therefore by 3 group and the methylene group and the C atoms, and the H atoms attached to them, ortho and meta to the methylene group, and in the anion, all atoms except the N atom in the five-membered ring. The somewhat extreme anisotropic displacement parameters associated with atoms C11 and C12 are attributed to a degree of disorder in these sites which has not been modelled in detail. Difference-map peaks provided approximate positions for the H atoms of the NH3 group. These H atoms were then refined with isotropic displacement parameters in the usual manner. H atoms attached to C atoms were placed in calculated positions, with C—H set at 0.93 and 0.97 Å for aryl and methylene H atoms, respectively, and refined using a riding model, with Uiso(H) = 1.2Ueq(C) in both cases.
to complete the ions are, in the benzylammonium counter-cation, one H atom of each of the NHData collection: Nicolet P3 software (Nicolet, 1980); cell Nicolet P3 software; data reduction: RDNIC (Howie, 1980); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2003).
Supporting information
https://doi.org/10.1107/S1600536805018866/lh6446sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536805018866/lh6446Isup2.hkl
Data collection: Nicolet P3 software (Nicolet, 1980); cell
Nicolet P3 software; data reduction: RDNIC (Howie, 1980); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2003).C7H10N+·C14H4N5− | Dx = 1.254 Mg m−3 |
Mr = 350.38 | Melting point = 571–572 K |
Monoclinic, I2/m | Mo Kα radiation, λ = 0.71073 Å |
a = 11.46 (2) Å | Cell parameters from 14 reflections |
b = 13.094 (5) Å | θ = 8.5–12.4° |
c = 13.563 (9) Å | µ = 0.08 mm−1 |
β = 114.22 (5)° | T = 295 K |
V = 1857 (4) Å3 | Block, orange |
Z = 4 | 0.44 × 0.44 × 0.30 mm |
F(000) = 728 |
Nicolet P3 four-circle diffractometer | Rint = 0.017 |
Radiation source: normal-focus sealed tube | θmax = 25.1°, θmin = 2.0° |
Graphite monochromator | h = 0→12 |
ω–2θ scans | k = 0→15 |
1803 measured reflections | l = −16→14 |
1714 independent reflections | 2 standard reflections every 50 reflections |
1044 reflections with I > 2σ(I) | intensity decay: none |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: geom and difmap |
R[F2 > 2σ(F2)] = 0.051 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.127 | w = 1/[σ2(Fo2) + (0.0627P)2] where P = (Fo2 + 2Fc2)/3 |
S = 0.99 | (Δ/σ)max < 0.001 |
1714 reflections | Δρmax = 0.14 e Å−3 |
138 parameters | Δρmin = −0.15 e Å−3 |
0 restraints | Extinction correction: SHELXL97, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0037 (9) |
Experimental. Scan rates, dependent on prescan intensity (Ip), were in the range 58.6 (Ip>2500) to 5.33 (Ip<150) ° 2θ min-1. Scan widths, dependent on 2θ, were in the range 2.4 to 2.7 ° 2θ. Stationary crystal, stationary counter background counts were taken on either side of the peak each for 25% of the total (peak plus background) count time. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. Least-squares planes (x,y,z in crystal coordinates) and deviations from them (* indicates atom used to define plane) 8.3940 (175) x - 0.0000 y - 12.4980 (253) z = 2.4776 (57) * -0.0167 (0.0021) N1 * -0.0098 (0.0014) C1 * 0.0263 (0.0017) C2 * 0.0114 (0.0019) C3 * -0.0195 (0.0014) C4 * -0.0098 (0.0014) C1_$1 * 0.0263 (0.0017) C2_$1 * 0.0114 (0.0019) C3_$1 * -0.0195 (0.0014) C4_$1 - 0.0730 (0.0026) C5 - 0.0998 (0.0025) C6 - 0.1780 (0.0033) C7 - 0.1315 (0.0025) N2 - 0.2715 (0.0039) N3 Rms deviation of fitted atoms = 0.0179 7.8323 (185) x + 0.9875 (249) y - 12.7850 (259) z = 2.3858 (64) Angle to previous plane (with approximate e.s.d.) = 5.77 (0.15) * -0.0024 (0.0011) C5 * 0.0024 (0.0019) C6 * 0.0030 (0.0021) C7 * -0.0013 (0.0010) N2 * -0.0016 (0.0012) N3 Rms deviation of fitted atoms = 0.0022 - 7.3079 (209) x + 0.0000 y + 13.0768 (269) z = 1.5705 (71) Angle to previous plane (with approximate e.s.d.) = 5.65 (0.19) * 0.0008 (0.0028) C9 * -0.0006 (0.0020) C10 * 0.0002 (0.0036) C11 * 0.0000 (0.0051) C12 * -0.0006 (0.0020) C10_$1 * 0.0002 (0.0036) C11_$1 - 0.0402 (0.0061) C8 1.3100 (0.0071) N4 Rms deviation of fitted atoms = 0.0005 - 0.0000 x - 13.0940 (0.0263) y + 0.0000 z = 0.0000 Angle to previous plane (with approximate e.s.d.) = 90.00 (0.11) * 0.0000 (0.0000) N4 * 0.0000 (0.0000) C8 * 0.0000 (0.0000) C9 Rms deviation of fitted atoms = 0.0000 |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
N1 | 0.3135 (2) | 0.0000 | 0.01368 (18) | 0.0496 (6) | |
C1 | 0.38537 (18) | 0.08350 (15) | 0.06137 (15) | 0.0477 (5) | |
C2 | 0.51242 (18) | 0.05337 (15) | 0.14381 (15) | 0.0501 (5) | |
C3 | 0.61578 (19) | 0.10769 (18) | 0.21442 (18) | 0.0650 (7) | |
H3 | 0.6164 | 0.1787 | 0.2140 | 0.078* | |
C4 | 0.7191 (2) | 0.05223 (18) | 0.2863 (2) | 0.0789 (8) | |
H4 | 0.7899 | 0.0869 | 0.3355 | 0.095* | |
C5 | 0.3396 (2) | 0.18195 (15) | 0.03565 (15) | 0.0526 (6) | |
C6 | 0.4119 (2) | 0.26993 (17) | 0.08642 (17) | 0.0596 (6) | |
N2 | 0.46788 (19) | 0.34170 (16) | 0.12652 (17) | 0.0799 (7) | |
C7 | 0.2127 (2) | 0.19929 (15) | −0.04116 (19) | 0.0686 (7) | |
N3 | 0.1099 (2) | 0.21293 (16) | −0.10270 (19) | 0.1049 (9) | |
N4 | −0.0440 (3) | 0.0000 | 0.1957 (2) | 0.0577 (7) | |
H4A | −0.029 (2) | 0.0599 (18) | 0.2475 (19) | 0.095 (8)* | |
H4B | −0.136 (4) | 0.0000 | 0.145 (3) | 0.098 (12)* | |
C8 | 0.0479 (3) | 0.0000 | 0.1438 (3) | 0.0762 (10) | |
H8A | 0.0324 | −0.0598 | 0.0980 | 0.091* | |
C9 | 0.1838 (3) | 0.0000 | 0.2229 (3) | 0.0660 (9) | |
C10 | 0.2474 (3) | 0.0901 (2) | 0.2583 (2) | 0.0958 (9) | |
H10 | 0.2051 | 0.1519 | 0.2345 | 0.115* | |
C11 | 0.3733 (3) | 0.0892 (5) | 0.3287 (3) | 0.149 (2) | |
H11 | 0.4159 | 0.1509 | 0.3526 | 0.178* | |
C12 | 0.4380 (6) | 0.0000 | 0.3649 (5) | 0.179 (5) | |
H12 | 0.5238 | 0.0000 | 0.4128 | 0.215* |
U11 | U22 | U33 | U12 | U13 | U23 | |
N1 | 0.0581 (15) | 0.0383 (13) | 0.0447 (13) | 0.000 | 0.0134 (12) | 0.000 |
C1 | 0.0536 (12) | 0.0471 (12) | 0.0411 (10) | −0.0031 (10) | 0.0183 (10) | −0.0022 (9) |
C2 | 0.0530 (12) | 0.0517 (11) | 0.0488 (11) | −0.0041 (10) | 0.0240 (10) | −0.0026 (10) |
C3 | 0.0530 (13) | 0.0630 (15) | 0.0745 (15) | −0.0074 (12) | 0.0217 (12) | −0.0093 (12) |
C4 | 0.0490 (13) | 0.0902 (17) | 0.0863 (17) | −0.0091 (12) | 0.0163 (12) | −0.0108 (14) |
C5 | 0.0616 (13) | 0.0410 (11) | 0.0477 (12) | −0.0038 (11) | 0.0147 (10) | −0.0055 (9) |
C6 | 0.0682 (15) | 0.0484 (13) | 0.0575 (14) | −0.0029 (12) | 0.0212 (12) | −0.0057 (11) |
N2 | 0.0891 (15) | 0.0549 (12) | 0.0850 (14) | −0.0152 (12) | 0.0247 (12) | −0.0154 (11) |
C7 | 0.0811 (17) | 0.0351 (12) | 0.0680 (15) | 0.0014 (12) | 0.0088 (14) | −0.0057 (11) |
N3 | 0.0987 (17) | 0.0586 (14) | 0.1009 (17) | 0.0108 (12) | −0.0162 (15) | −0.0012 (12) |
N4 | 0.0606 (18) | 0.0480 (16) | 0.0532 (16) | 0.000 | 0.0119 (15) | 0.000 |
C8 | 0.097 (3) | 0.072 (2) | 0.057 (2) | 0.000 | 0.029 (2) | 0.000 |
C9 | 0.075 (2) | 0.072 (2) | 0.060 (2) | 0.000 | 0.0366 (19) | 0.000 |
C10 | 0.101 (2) | 0.095 (2) | 0.104 (2) | −0.0255 (19) | 0.0543 (18) | −0.0144 (18) |
C11 | 0.092 (3) | 0.242 (6) | 0.128 (4) | −0.075 (3) | 0.062 (3) | −0.058 (4) |
C12 | 0.069 (4) | 0.393 (16) | 0.081 (4) | 0.000 | 0.038 (3) | 0.000 |
N1—C1 | 1.362 (2) | N4—H4Ai | 1.02 (2) |
N1—C1i | 1.362 (2) | N4—C8 | 1.488 (5) |
C1—C5 | 1.382 (3) | N4—H4A | 1.02 (2) |
C1—C2 | 1.480 (3) | N4—H4B | 0.99 (4) |
C2—C3 | 1.377 (3) | C8—C9 | 1.486 (5) |
C2—C2i | 1.398 (4) | C8—H8A | 0.9700 |
C3—C4 | 1.391 (3) | C9—C10 | 1.367 (3) |
C3—H3 | 0.9300 | C9—C10i | 1.367 (3) |
C4—C4i | 1.368 (5) | C10—C11 | 1.365 (5) |
C4—H4 | 0.9300 | C10—H10 | 0.9300 |
C5—C7 | 1.417 (4) | C11—C12 | 1.363 (5) |
C5—C6 | 1.422 (3) | C11—H11 | 0.9300 |
C6—N2 | 1.142 (3) | C12—C11i | 1.363 (5) |
C7—N3 | 1.144 (3) | C12—H12 | 0.9300 |
C1—N1—C1i | 106.8 (2) | H4Ai—N4—H4B | 108.1 (18) |
N1—C1—C5 | 122.41 (19) | C8—N4—H4B | 115 (2) |
N1—C1—C2 | 111.14 (18) | H4A—N4—H4B | 108.1 (18) |
C5—C1—C2 | 126.42 (17) | C9—C8—N4 | 113.2 (3) |
C3—C2—C2i | 121.10 (13) | C9—C8—H8A | 108.9 |
C3—C2—C1 | 133.39 (19) | N4—C8—H8A | 108.9 |
C2i—C2—C1 | 105.46 (11) | C9—C8—H8Ai | 108.9 |
C2—C3—C4 | 117.4 (2) | N4—C8—H8Ai | 108.9 |
C2—C3—H3 | 121.3 | H8A—C8—H8Ai | 107.7 |
C4—C3—H3 | 121.3 | C10—C9—C10i | 119.4 (4) |
C4i—C4—C3 | 121.48 (14) | C10—C9—C8 | 120.3 (2) |
C4i—C4—H4 | 119.3 | C10i—C9—C8 | 120.3 (2) |
C3—C4—H4 | 119.3 | C11—C10—C9 | 119.8 (4) |
C1—C5—C7 | 120.28 (18) | C11—C10—H10 | 120.1 |
C1—C5—C6 | 123.22 (19) | C9—C10—H10 | 120.1 |
C7—C5—C6 | 116.44 (19) | C12—C11—C10 | 121.5 (6) |
N2—C6—C5 | 178.6 (2) | C12—C11—H11 | 119.3 |
N3—C7—C5 | 179.5 (3) | C10—C11—H11 | 119.3 |
H4Ai—N4—C8 | 111.7 (13) | C11i—C12—C11 | 118.0 (7) |
H4Ai—N4—H4A | 101 (3) | C11i—C12—H12 | 121.0 |
C8—N4—H4A | 111.7 (13) | C11—C12—H12 | 121.0 |
N1—C1—C5—C6 | 178.4 (2) | C2—C1—C5—C7 | −176.41 (19) |
N1—C1—C5—C7 | 1.4 (3) | N4—C8—C9—C10 | −91.0 (3) |
C2—C1—C5—C6 | 0.6 (3) |
Symmetry code: (i) x, −y, z. |
D—H···A | D—H | H···A | D···A | D—H···A |
N4—H4B···N1ii | 0.99 (4) | 2.28 (4) | 3.227 (6) | 159 (3) |
N4—H4A···N2iii | 1.02 (2) | 2.02 (2) | 3.024 (3) | 167.2 (19) |
Symmetry codes: (ii) −x, −y, −z; (iii) −x+1/2, −y+1/2, −z+1/2. |
CgI···CgJ | Cg···Cg | α | β | γ | CgIperp | CgJperp |
Cg1···Cg2 | 3.551 | 6.26 | 2.54 | 3.72 | 3.544 | 3.548 |
Cg1···Cg1xi | 3.448 | 0.00 | 6.64 | 6.64 | 3.424 | 3.424 |
Notes: Ring 1, with centroid Cg1, is defined by N1/C1/C2/C2i/C1i; ring 2, with centroid Cg2, is defined by C9/C10/C11/C12/C11i/C10i. CgXperp (X = I or J) is the perpendicular distance of the centroid of ring X to the least squares plane of ring Y (X ≠ Y). α is the dihedral angle between the planes of the rings. β and γ are the angles at CgX between Cg···Cg and CgXperp for X = I and J, respectively. Symmetry codes: (i) x, -y, z; (xi) 1 - x, y, -z. |
Acknowledgements
SC thanks Dublin City University for a studentship.
References
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