organic compounds
(1R*,3S*,8S*)-2,2-Difluoro-3,8-dihydroxy-5,5-dimethylcyclooct-4(Z)-en-1-yl N,N-diethylcarbamate
aDepartment of Chemistry, University of Leicester, Leicester LE1 7RH, England, bGlaxoSmithKline Pharmaceuticals, New Frontiers Science Park, Third Avenue, Harlow CM19 5AW, England, and cChroma Therapeutics Ltd, 93 Milton Park, Abingdon, Oxon OX14 4RY, England
*Correspondence e-mail: jmp29@leicester.ac.uk
The structure of the title compound, C15H25F2NO4, is presented. Comparison of this minor product with the isomeric major product of the synthesis is made in the previous paper.
Comment
The pseudorotational relationship between the ring conformations of the title compound, (2), and diol (1), which was presented in the previous paper (Fawcett et al., 2005), are discussed in the Comment of that paper.
Hydrogen bonding (Table 1) links molecules of (2) into sheets perpendicular to the c axis.
Experimental
Compound (2) was obtained as the minor product during the preparation of diol (1), as described in the previous paper (Fawcett et al., 2005). A sample was recrystallized by vapour diffusion (ethyl acetate/light petroleum) to afford colourless crystals.
Crystal data
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Data collection
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Refinement
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H atoms were positioned geometrically, with C—H = 0.95–1.00 Å and O—H = 0.84 Å, and treated as riding, with Uiso(H) = 1.2 or 1.5 (methyl and OH) times Ueq of the parent atom.
Data collection: SMART (Bruker, 1997); cell SAINT (Bruker, 1999); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: SHELXTL (Sheldrick, 2000); software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536805024840/cf6443sup1.cif
contains datablocks 2, global. DOI:Structure factors: contains datablock 2. DOI: 10.1107/S1600536805024840/cf64432sup2.hkl
Compound (2) was obtained as the minor product during the preparation of diol (1), as described in the previous paper (Fawcett et al., 2005). A sample was recrystallized by vapour diffusion (ethyl acetate/light petroleum) to afford colourless crystals.
H atoms were positioned geometrically, with C—H = 0.95–1.00 Å and O—H = 0.84 Å, and treated as riding, with Uiso(H) = 1.2 or 1.5 (methyl and OH) times Ueq of the parent atom.
Data collection: SMART (Bruker, 1997); cell
SAINT (Bruker, 1999); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: SHELXTL (Sheldrick, 2000); software used to prepare material for publication: SHELXTL.Fig. 1. The molecular structure of (2), showing the atom-numbering scheme and 50% displacement ellipsoids. |
C15H25F2NO4 | F(000) = 688 |
Mr = 321.36 | Dx = 1.342 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 3558 reflections |
a = 20.062 (14) Å | θ = 3.1–28.1° |
b = 6.433 (4) Å | µ = 0.11 mm−1 |
c = 12.424 (9) Å | T = 150 K |
β = 97.346 (12)° | Block, colourless |
V = 1590.4 (19) Å3 | 0.28 × 0.22 × 0.15 mm |
Z = 4 |
Bruker APEX CCD area-detector diffractometer | 2413 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.068 |
Graphite monochromator | θmax = 25.0°, θmin = 2.1° |
ϕ and ω scans | h = −23→23 |
10968 measured reflections | k = −7→7 |
2805 independent reflections | l = −14→14 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.039 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.095 | H-atom parameters constrained |
S = 1.05 | w = 1/[σ2(Fo2) + (0.045P)2 + 0.1172P] where P = (Fo2 + 2Fc2)/3 |
2805 reflections | (Δ/σ)max = 0.003 |
205 parameters | Δρmax = 0.22 e Å−3 |
0 restraints | Δρmin = −0.21 e Å−3 |
C15H25F2NO4 | V = 1590.4 (19) Å3 |
Mr = 321.36 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 20.062 (14) Å | µ = 0.11 mm−1 |
b = 6.433 (4) Å | T = 150 K |
c = 12.424 (9) Å | 0.28 × 0.22 × 0.15 mm |
β = 97.346 (12)° |
Bruker APEX CCD area-detector diffractometer | 2413 reflections with I > 2σ(I) |
10968 measured reflections | Rint = 0.068 |
2805 independent reflections |
R[F2 > 2σ(F2)] = 0.039 | 0 restraints |
wR(F2) = 0.095 | H-atom parameters constrained |
S = 1.05 | Δρmax = 0.22 e Å−3 |
2805 reflections | Δρmin = −0.21 e Å−3 |
205 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
F1 | 0.17709 (4) | 0.50429 (15) | 0.94617 (7) | 0.0317 (3) | |
F2 | 0.23221 (4) | 0.25700 (13) | 0.87715 (7) | 0.0289 (2) | |
N1 | 0.11443 (6) | 0.73451 (19) | 0.64634 (10) | 0.0253 (3) | |
O1 | 0.25363 (6) | 0.30397 (16) | 1.10013 (8) | 0.0279 (3) | |
H1 | 0.2329 | 0.3768 | 1.1410 | 0.042* | |
O2 | 0.30629 (6) | 0.58984 (17) | 0.66659 (8) | 0.0274 (3) | |
H2 | 0.2857 | 0.4869 | 0.6370 | 0.041* | |
O3 | 0.19811 (5) | 0.58723 (15) | 0.75457 (8) | 0.0234 (3) | |
O4 | 0.19503 (5) | 0.93651 (16) | 0.73795 (8) | 0.0269 (3) | |
C1 | 0.28505 (8) | 0.4356 (2) | 1.02965 (12) | 0.0228 (4) | |
H1A | 0.2908 | 0.5774 | 1.0625 | 0.027* | |
C2 | 0.23950 (7) | 0.4496 (2) | 0.92154 (12) | 0.0220 (3) | |
C3 | 0.25589 (7) | 0.6030 (2) | 0.83486 (11) | 0.0205 (3) | |
H3 | 0.2589 | 0.7468 | 0.8657 | 0.025* | |
C4 | 0.31992 (8) | 0.5554 (2) | 0.78015 (12) | 0.0226 (3) | |
H4 | 0.3315 | 0.4054 | 0.7923 | 0.027* | |
C5 | 0.38220 (7) | 0.6860 (2) | 0.82212 (12) | 0.0247 (4) | |
C6 | 0.39729 (8) | 0.6690 (3) | 0.94646 (12) | 0.0272 (4) | |
H6A | 0.4400 | 0.7420 | 0.9708 | 0.033* | |
H6B | 0.3612 | 0.7399 | 0.9797 | 0.033* | |
C7 | 0.40263 (8) | 0.4506 (3) | 0.98573 (13) | 0.0295 (4) | |
H7 | 0.4447 | 0.3823 | 0.9870 | 0.035* | |
C8 | 0.35268 (8) | 0.3461 (3) | 1.01882 (12) | 0.0269 (4) | |
H8 | 0.3601 | 0.2038 | 1.0371 | 0.032* | |
C9 | 0.17114 (8) | 0.7665 (2) | 0.71366 (12) | 0.0213 (3) | |
C10 | 0.09080 (8) | 0.5314 (2) | 0.60752 (13) | 0.0302 (4) | |
H10C | 0.0413 | 0.5259 | 0.6044 | 0.036* | |
H10D | 0.1101 | 0.4239 | 0.6594 | 0.036* | |
C11 | 0.10994 (10) | 0.4840 (3) | 0.49671 (15) | 0.0404 (5) | |
H11D | 0.0923 | 0.5928 | 0.4457 | 0.061* | |
H11E | 0.0910 | 0.3494 | 0.4718 | 0.061* | |
H11F | 0.1590 | 0.4789 | 0.5006 | 0.061* | |
C5" | 0.37228 (8) | 0.9155 (2) | 0.79324 (13) | 0.0313 (4) | |
H5"1 | 0.4109 | 0.9954 | 0.8274 | 0.047* | |
H5"2 | 0.3312 | 0.9661 | 0.8194 | 0.047* | |
H5"3 | 0.3684 | 0.9323 | 0.7143 | 0.047* | |
C5' | 0.44161 (8) | 0.6016 (3) | 0.77064 (14) | 0.0362 (4) | |
H5'1 | 0.4334 | 0.6213 | 0.6918 | 0.054* | |
H5'2 | 0.4471 | 0.4531 | 0.7870 | 0.054* | |
H5'3 | 0.4826 | 0.6760 | 0.8000 | 0.054* | |
C10' | 0.07636 (8) | 0.9164 (3) | 0.60459 (13) | 0.0293 (4) | |
H10A | 0.0514 | 0.8827 | 0.5328 | 0.035* | |
H10B | 0.1080 | 1.0308 | 0.5945 | 0.035* | |
C11' | 0.02753 (9) | 0.9882 (3) | 0.67924 (15) | 0.0388 (4) | |
H11A | −0.0045 | 0.8765 | 0.6883 | 0.058* | |
H11B | 0.0032 | 1.1105 | 0.6480 | 0.058* | |
H11C | 0.0521 | 1.0243 | 0.7501 | 0.058* |
U11 | U22 | U33 | U12 | U13 | U23 | |
F1 | 0.0218 (5) | 0.0425 (6) | 0.0322 (5) | 0.0031 (4) | 0.0085 (4) | 0.0033 (4) |
F2 | 0.0379 (6) | 0.0228 (5) | 0.0260 (5) | −0.0057 (4) | 0.0036 (4) | −0.0032 (4) |
N1 | 0.0254 (7) | 0.0247 (7) | 0.0240 (7) | 0.0031 (5) | −0.0035 (6) | 0.0010 (5) |
O1 | 0.0360 (7) | 0.0256 (6) | 0.0239 (6) | 0.0017 (5) | 0.0103 (5) | 0.0029 (5) |
O2 | 0.0351 (7) | 0.0288 (6) | 0.0183 (6) | −0.0051 (5) | 0.0033 (5) | −0.0025 (5) |
O3 | 0.0223 (6) | 0.0212 (6) | 0.0245 (6) | −0.0004 (4) | −0.0047 (4) | −0.0001 (4) |
O4 | 0.0336 (6) | 0.0208 (6) | 0.0256 (6) | −0.0015 (5) | 0.0014 (5) | −0.0010 (5) |
C1 | 0.0275 (9) | 0.0207 (8) | 0.0206 (8) | −0.0006 (6) | 0.0048 (6) | 0.0007 (6) |
C2 | 0.0207 (8) | 0.0200 (8) | 0.0261 (8) | −0.0004 (6) | 0.0059 (6) | −0.0043 (6) |
C3 | 0.0194 (8) | 0.0209 (8) | 0.0198 (8) | 0.0015 (6) | −0.0026 (6) | −0.0022 (6) |
C4 | 0.0272 (9) | 0.0217 (8) | 0.0187 (8) | −0.0001 (6) | 0.0030 (6) | 0.0000 (6) |
C5 | 0.0229 (8) | 0.0267 (9) | 0.0246 (8) | −0.0010 (7) | 0.0029 (6) | −0.0002 (7) |
C6 | 0.0201 (8) | 0.0337 (9) | 0.0267 (9) | −0.0033 (7) | −0.0011 (7) | 0.0005 (7) |
C7 | 0.0231 (9) | 0.0373 (10) | 0.0268 (9) | 0.0054 (7) | −0.0010 (7) | 0.0035 (7) |
C8 | 0.0301 (9) | 0.0272 (9) | 0.0224 (8) | 0.0062 (7) | 0.0000 (7) | 0.0036 (7) |
C9 | 0.0249 (8) | 0.0229 (9) | 0.0170 (7) | 0.0022 (6) | 0.0058 (6) | 0.0006 (6) |
C10 | 0.0259 (9) | 0.0295 (9) | 0.0329 (9) | −0.0039 (7) | −0.0049 (7) | 0.0017 (7) |
C11 | 0.0435 (11) | 0.0362 (10) | 0.0392 (11) | 0.0071 (9) | −0.0028 (9) | −0.0101 (8) |
C5" | 0.0304 (9) | 0.0305 (9) | 0.0316 (9) | −0.0067 (7) | −0.0004 (7) | 0.0028 (7) |
C5' | 0.0285 (9) | 0.0458 (11) | 0.0357 (10) | −0.0012 (8) | 0.0098 (8) | 0.0024 (8) |
C10' | 0.0305 (9) | 0.0324 (9) | 0.0242 (9) | 0.0080 (7) | 0.0008 (7) | 0.0038 (7) |
C11' | 0.0407 (11) | 0.0425 (11) | 0.0342 (10) | 0.0126 (9) | 0.0087 (8) | 0.0031 (8) |
F1—C2 | 1.3722 (18) | C6—H6A | 0.990 |
F2—C2 | 1.3564 (18) | C6—H6B | 0.990 |
N1—C9 | 1.339 (2) | C7—C8 | 1.316 (2) |
N1—C10 | 1.451 (2) | C7—H7 | 0.950 |
N1—C10' | 1.456 (2) | C8—H8 | 0.950 |
O1—C1 | 1.4220 (18) | C10—C11 | 1.507 (3) |
O1—H1 | 0.840 | C10—H10C | 0.990 |
O2—C4 | 1.420 (2) | C10—H10D | 0.990 |
O2—H2 | 0.840 | C11—H11D | 0.980 |
O3—C9 | 1.3458 (19) | C11—H11E | 0.980 |
O3—C3 | 1.4329 (18) | C11—H11F | 0.980 |
O4—C9 | 1.2167 (19) | C5"—H5"1 | 0.980 |
C1—C8 | 1.496 (2) | C5"—H5"2 | 0.980 |
C1—C2 | 1.528 (2) | C5"—H5"3 | 0.980 |
C1—H1A | 1.000 | C5'—H5'1 | 0.980 |
C2—C3 | 1.527 (2) | C5'—H5'2 | 0.980 |
C3—C4 | 1.559 (2) | C5'—H5'3 | 0.980 |
C3—H3 | 1.000 | C10'—C11' | 1.505 (2) |
C4—C5 | 1.540 (2) | C10'—H10A | 0.990 |
C4—H4 | 1.000 | C10'—H10B | 0.990 |
C5—C5' | 1.523 (2) | C11'—H11A | 0.980 |
C5—C5" | 1.526 (2) | C11'—H11B | 0.980 |
C5—C6 | 1.540 (2) | C11'—H11C | 0.980 |
C6—C7 | 1.487 (2) | ||
C9—N1—C10 | 124.15 (13) | C6—C7—H7 | 118.0 |
C9—N1—C10' | 117.66 (13) | C7—C8—C1 | 124.56 (15) |
C10—N1—C10' | 118.09 (13) | C7—C8—H8 | 117.7 |
C1—O1—H1 | 109.5 | C1—C8—H8 | 117.7 |
C4—O2—H2 | 109.5 | O4—C9—N1 | 124.71 (14) |
C9—O3—C3 | 116.91 (12) | O4—C9—O3 | 123.38 (14) |
O1—C1—C8 | 107.74 (13) | N1—C9—O3 | 111.89 (13) |
O1—C1—C2 | 108.30 (13) | N1—C10—C11 | 112.04 (14) |
C8—C1—C2 | 113.03 (13) | N1—C10—H10C | 109.2 |
O1—C1—H1A | 109.2 | C11—C10—H10C | 109.2 |
C8—C1—H1A | 109.2 | N1—C10—H10D | 109.2 |
C2—C1—H1A | 109.2 | C11—C10—H10D | 109.2 |
F2—C2—F1 | 105.72 (12) | H10C—C10—H10D | 107.9 |
F2—C2—C3 | 108.99 (12) | C10—C11—H11D | 109.5 |
F1—C2—C3 | 106.05 (12) | C10—C11—H11E | 109.5 |
F2—C2—C1 | 108.96 (12) | H11D—C11—H11E | 109.5 |
F1—C2—C1 | 106.22 (12) | C10—C11—H11F | 109.5 |
C3—C2—C1 | 119.96 (13) | H11D—C11—H11F | 109.5 |
O3—C3—C2 | 102.53 (12) | H11E—C11—H11F | 109.5 |
O3—C3—C4 | 108.72 (12) | C5—C5"—H5"1 | 109.5 |
C2—C3—C4 | 116.38 (12) | C5—C5"—H5"2 | 109.5 |
O3—C3—H3 | 109.6 | H5"1—C5"—H5"2 | 109.5 |
C2—C3—H3 | 109.6 | C5—C5"—H5"3 | 109.5 |
C4—C3—H3 | 109.6 | H5"1—C5"—H5"3 | 109.5 |
O2—C4—C5 | 107.23 (12) | H5"2—C5"—H5"3 | 109.5 |
O2—C4—C3 | 109.75 (12) | C5—C5'—H5'1 | 109.5 |
C5—C4—C3 | 115.04 (12) | C5—C5'—H5'2 | 109.5 |
O2—C4—H4 | 108.2 | H5'1—C5'—H5'2 | 109.5 |
C5—C4—H4 | 108.2 | C5—C5'—H5'3 | 109.5 |
C3—C4—H4 | 108.2 | H5'1—C5'—H5'3 | 109.5 |
C5'—C5—C5" | 109.39 (13) | H5'2—C5'—H5'3 | 109.5 |
C5'—C5—C6 | 109.39 (13) | N1—C10'—C11' | 112.35 (14) |
C5"—C5—C6 | 107.91 (13) | N1—C10'—H10A | 109.1 |
C5'—C5—C4 | 107.92 (14) | C11'—C10'—H10A | 109.1 |
C5"—C5—C4 | 111.86 (13) | N1—C10'—H10B | 109.1 |
C6—C5—C4 | 110.35 (12) | C11'—C10'—H10B | 109.1 |
C7—C6—C5 | 113.14 (13) | H10A—C10'—H10B | 107.9 |
C7—C6—H6A | 109.0 | C10'—C11'—H11A | 109.5 |
C5—C6—H6A | 109.0 | C10'—C11'—H11B | 109.5 |
C7—C6—H6B | 109.0 | H11A—C11'—H11B | 109.5 |
C5—C6—H6B | 109.0 | C10'—C11'—H11C | 109.5 |
H6A—C6—H6B | 107.8 | H11A—C11'—H11C | 109.5 |
C8—C7—C6 | 124.04 (15) | H11B—C11'—H11C | 109.5 |
C8—C7—H7 | 118.0 | ||
O1—C1—C2—F2 | −61.47 (15) | C3—C4—C5—C5" | −66.51 (17) |
C8—C1—C2—F2 | 57.83 (16) | O2—C4—C5—C6 | 176.01 (12) |
O1—C1—C2—F1 | 52.00 (15) | C3—C4—C5—C6 | 53.64 (17) |
C8—C1—C2—F1 | 171.30 (12) | C5'—C5—C6—C7 | −65.68 (17) |
O1—C1—C2—C3 | 172.00 (12) | C5"—C5—C6—C7 | 175.41 (13) |
C8—C1—C2—C3 | −68.70 (18) | C4—C5—C6—C7 | 52.91 (17) |
C9—O3—C3—C2 | 134.44 (12) | C5—C6—C7—C8 | −95.27 (19) |
C9—O3—C3—C4 | −101.78 (14) | C6—C7—C8—C1 | −4.8 (3) |
F2—C2—C3—O3 | 60.55 (14) | O1—C1—C8—C7 | −160.47 (15) |
F1—C2—C3—O3 | −52.85 (14) | C2—C1—C8—C7 | 79.9 (2) |
C1—C2—C3—O3 | −172.94 (12) | C10—N1—C9—O4 | 172.08 (14) |
F2—C2—C3—C4 | −57.97 (16) | C10'—N1—C9—O4 | −4.1 (2) |
F1—C2—C3—C4 | −171.36 (11) | C10—N1—C9—O3 | −9.8 (2) |
C1—C2—C3—C4 | 68.55 (18) | C10'—N1—C9—O3 | 174.05 (12) |
O3—C3—C4—O2 | 22.24 (16) | C3—O3—C9—O4 | 3.3 (2) |
C2—C3—C4—O2 | 137.32 (13) | C3—O3—C9—N1 | −174.85 (12) |
O3—C3—C4—C5 | 143.24 (12) | C9—N1—C10—C11 | −97.16 (18) |
C2—C3—C4—C5 | −101.68 (16) | C10'—N1—C10—C11 | 78.99 (18) |
O2—C4—C5—C5' | −64.51 (16) | C9—N1—C10'—C11' | −87.16 (18) |
C3—C4—C5—C5' | 173.12 (13) | C10—N1—C10'—C11' | 96.43 (18) |
O2—C4—C5—C5" | 55.86 (16) |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1···O4i | 0.84 | 1.92 | 2.7598 (19) | 173 |
O2—H2···O1ii | 0.84 | 2.01 | 2.827 (2) | 163 |
Symmetry codes: (i) x, −y+3/2, z+1/2; (ii) x, −y+1/2, z−1/2. |
Experimental details
Crystal data | |
Chemical formula | C15H25F2NO4 |
Mr | 321.36 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 150 |
a, b, c (Å) | 20.062 (14), 6.433 (4), 12.424 (9) |
β (°) | 97.346 (12) |
V (Å3) | 1590.4 (19) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.11 |
Crystal size (mm) | 0.28 × 0.22 × 0.15 |
Data collection | |
Diffractometer | Bruker APEX CCD area-detector diffractometer |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 10968, 2805, 2413 |
Rint | 0.068 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.039, 0.095, 1.05 |
No. of reflections | 2805 |
No. of parameters | 205 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.22, −0.21 |
Computer programs: SMART (Bruker, 1997), SAINT (Bruker, 1999), SAINT, SHELXS97 (Sheldrick, 1997), SHELXL97 (Sheldrick, 1997), SHELXTL (Sheldrick, 2000), SHELXTL.
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1···O4i | 0.84 | 1.92 | 2.7598 (19) | 173 |
O2—H2···O1ii | 0.84 | 2.01 | 2.827 (2) | 163 |
Symmetry codes: (i) x, −y+3/2, z+1/2; (ii) x, −y+1/2, z−1/2. |
Acknowledgements
The authors thank the Universities of Birmingham and Leicester, the EPSRC (project prant GR/K84882 for SP), GlaxoSmithKline (CASE studentship for SP) and Universities UK (ORS Award for EU).
References
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The pseudorotational relationship between the ring conformations of the title compound, (2), and diol (1), which was presented in the previous paper (Fawcett et al., 2005), are discussed in the Comment of that paper.
Hydrogen bonding (Table 1) links molecules of (2) into sheets perpendicular to the c axis.