organic compounds
3-Benzyl-1-butylimidazo[1,2-a]benzothieno[3,2-d]pyrimidine-2,5(1H,3H)-dione
aCollege of Science, HuaZhong Agricultural University, Wuhan 430070, People's Republic of China, bDepartment of Biochemistry, Yunyang Medical College, Shiyan 442000, People's Republic of China, and cCollege of Horticulture and Forestry Science, HuaZhong Agricultural University, Wuhan 430070, People's Republic of China
*Correspondence e-mail: nidejiang1021@yahoo.com.cn
In the 23H21N3O2S, all ring atoms of the imidazo[1,2-a]benzothieno[3,2-d]pyrimidine system are essentially coplanar and the phenyl ring is twisted with respect to it [dihedral angle = 72.60 (9)°]. The crystal packing is mainly governed by C—H⋯π hydrogen bonds and intermolecular π–π interactions, with interplanar distances of 3.54 (1) and 3.56 (1) Å, and with distances between adjacent ring centroids of 3.72 (1) and 3.80 (1) Å. The three terminal C atoms of the butyl group are disordered over two positions; the site occupancy factors are ca 0.6 and 0.4.
of the title compound, CRelated literature
Related preparation and biological activity is described by Walter (1999a,b). For related literature, see: Ding et al. (2004); Janiak (2000). For the crystal structures of other fused pyrimidinone derivatives, see: Cao et al. (2006); Xu et al. (2005).
Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 2001); cell SAINT-Plus (Bruker, 2001); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: PLATON (Spek, 2003); software used to prepare material for publication: SHELXTL (Sheldrick, 2001).
Supporting information
https://doi.org/10.1107/S1600536807061521/at2501sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536807061521/at2501Isup2.hkl
To a solution of the ethyl 3-((butylimino)methyleneamino)benzothiophene-2-carboxylate (3 mmol) in dichloromethane (5 ml) was added ethyl 2-amino-3-phenylpropanoate (3 mmol). After stirring the reaction mixture for 2 h, the solvent was removed and anhydrous ethanol (10 ml) with several drops of EtONa in EtOH was added. The mixture was stirred for 5 h at room temperature. The solution was concentrated under reduced pressure and the residue was recrystallized from ethanol to give the title compound in a yield of 86%. Crystals suitable for single-crystal X-ray diffraction were obtained by recrystallization from a mixed solvent of ethanol and dichloromethane (1:3 v/v) at room temperature.
All H-atoms were positioned geometrically and refined using a riding model with C—H = 0.93 Å, Uiso=1.2Ueq (C) for Csp2, C—H = 0.97 Å, Uiso = 1.2Ueq (C) for CH2, C—H = 0.96 Å, Uiso = 1.5Ueq (C) for CH3. C14, C15, C16 and attached hydrogen atoms are disordered over two sites, with refined occupancies of 0.387 (9) and 0.613 (9).
In the field of bioactive molecules, thienopyrimidine have received a great deal of attention (Walter, 1999a,b). Recently, There have being focused on the synthesis of the fused heterocycle systems containing thienopyrimidine via aza-Wittig reaction at room temperature(Ding et al., 2004). Herein, we present X-ray crystallographic analysis of the compound (I) in this paper, (Fig. 1), which may be used as a new precursor for obtaining bioactive molecules.
In the molecule, the bond lengths and angles are unexceptional (Cao et al., 2006; Xu et al., 2005). The four fused rings are close to coplanarity, with maximum deviations 0.060 (2)Å and -0.033 (3)Å for O3 and C11, respectively, which forms a dihedral angle of 72.60 (9)° with the adjacent C18—C23 phenyl ring.
Intermolecular C—H···π hydrogen bonds (Table 2) seem to be effective in stabilizing the Further stability the is provided by offset π-π stacking interactions (Janiak, 2000) involving the thiophene (A), the imidazoe (B) and the C1—C6 benzene (C) rings. The A:C interplanar distance is 3.54 (1) Å with distances between adjacent ring centroids of 3.72 (1)Å (symmetry code relating the adjacent rings: 1 - x, 2 - y, -z). A further interaction occurs between B adjacent C rings (symmetry code: 1 - x, 1 - y, -z), with an interplanar distance of 3.56 (1)Å and a centroid-to-centroid distance of 3.80 (1)Å (Fig. 2).
Related preparation and biological activity is described by Walter (1999a,b). For related literature, see: Ding et al. (2004); Janiak (2000). For the crystal structures of other fused pyrimidinone derivatives, see: Cao et al. (2006); Xu et al. (2005).
Data collection: SMART (Bruker, 2001); cell
SAINT-Plus (Bruker, 2001); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: PLATON (Spek, 2003); software used to prepare material for publication: SHELXTL (Sheldrick, 2001).C23H21N3O2S | F(000) = 848 |
Mr = 403.49 | Dx = 1.324 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 3589 reflections |
a = 13.1732 (16) Å | θ = 2.3–23.5° |
b = 8.4957 (11) Å | µ = 0.18 mm−1 |
c = 18.584 (2) Å | T = 298 K |
β = 103.345 (2)° | Prism, colourless |
V = 2023.7 (4) Å3 | 0.26 × 0.16 × 0.10 mm |
Z = 4 |
Bruker SMART 4K CCD area0detector diffractometer | 3958 independent reflections |
Radiation source: fine-focus sealed tube | 2896 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.129 |
φ and ω scans | θmax = 26.0°, θmin = 1.7° |
Absorption correction: multi-scan (SADABS; Sheldrick, 2003) | h = −16→16 |
Tmin = 0.954, Tmax = 0.982 | k = −10→10 |
15534 measured reflections | l = −22→22 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.059 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.170 | H-atom parameters constrained |
S = 1.00 | w = 1/[σ2(Fo2) + (0.0962P)2] where P = (Fo2 + 2Fc2)/3 |
3958 reflections | (Δ/σ)max < 0.001 |
292 parameters | Δρmax = 0.26 e Å−3 |
22 restraints | Δρmin = −0.32 e Å−3 |
C23H21N3O2S | V = 2023.7 (4) Å3 |
Mr = 403.49 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 13.1732 (16) Å | µ = 0.18 mm−1 |
b = 8.4957 (11) Å | T = 298 K |
c = 18.584 (2) Å | 0.26 × 0.16 × 0.10 mm |
β = 103.345 (2)° |
Bruker SMART 4K CCD area0detector diffractometer | 3958 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2003) | 2896 reflections with I > 2σ(I) |
Tmin = 0.954, Tmax = 0.982 | Rint = 0.129 |
15534 measured reflections |
R[F2 > 2σ(F2)] = 0.059 | 22 restraints |
wR(F2) = 0.170 | H-atom parameters constrained |
S = 1.00 | Δρmax = 0.26 e Å−3 |
3958 reflections | Δρmin = −0.32 e Å−3 |
292 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
C1 | 0.45304 (17) | 0.7981 (3) | 0.00701 (13) | 0.0455 (6) | |
C2 | 0.40479 (19) | 0.8227 (3) | −0.06750 (13) | 0.0541 (6) | |
H2 | 0.4330 | 0.7798 | −0.1046 | 0.065* | |
C3 | 0.31509 (19) | 0.9112 (3) | −0.08510 (14) | 0.0613 (7) | |
H3 | 0.2828 | 0.9287 | −0.1345 | 0.074* | |
C4 | 0.27219 (19) | 0.9745 (3) | −0.03029 (15) | 0.0658 (8) | |
H4 | 0.2111 | 1.0332 | −0.0435 | 0.079* | |
C5 | 0.31784 (19) | 0.9528 (3) | 0.04333 (15) | 0.0605 (7) | |
H5 | 0.2883 | 0.9956 | 0.0798 | 0.073* | |
C6 | 0.40899 (17) | 0.8655 (3) | 0.06174 (13) | 0.0500 (6) | |
C7 | 0.54724 (16) | 0.7149 (3) | 0.03847 (12) | 0.0441 (5) | |
C8 | 0.57103 (17) | 0.7199 (3) | 0.11501 (12) | 0.0465 (6) | |
C9 | 0.66293 (18) | 0.6487 (3) | 0.15852 (12) | 0.0497 (6) | |
C10 | 0.68847 (18) | 0.5729 (3) | 0.03767 (12) | 0.0454 (5) | |
C11 | 0.8372 (2) | 0.4266 (3) | 0.06606 (15) | 0.0563 (6) | |
C12 | 0.81459 (18) | 0.4798 (3) | 0.13877 (14) | 0.0544 (6) | |
H12 | 0.7970 | 0.3870 | 0.1648 | 0.065* | |
C13 | 0.7543 (2) | 0.4725 (3) | −0.06900 (13) | 0.0638 (7) | |
H13A | 0.6849 | 0.4359 | −0.0928 | 0.077* | 0.613 (9) |
H13B | 0.8029 | 0.3908 | −0.0754 | 0.077* | 0.613 (9) |
H13C | 0.6838 | 0.4415 | −0.0932 | 0.077* | 0.387 (9) |
H13D | 0.8002 | 0.3872 | −0.0756 | 0.077* | 0.387 (9) |
C14 | 0.8106 (7) | 0.6116 (9) | −0.0933 (4) | 0.062 (2) | 0.613 (9) |
H14A | 0.8832 | 0.6084 | −0.0668 | 0.074* | 0.613 (9) |
H14B | 0.7807 | 0.7079 | −0.0793 | 0.074* | 0.613 (9) |
C15 | 0.8060 (5) | 0.6175 (9) | −0.1761 (3) | 0.087 (2) | 0.613 (9) |
H15A | 0.8560 | 0.6945 | −0.1852 | 0.105* | 0.613 (9) |
H15B | 0.8260 | 0.5156 | −0.1920 | 0.105* | 0.613 (9) |
C16 | 0.7009 (7) | 0.6589 (14) | −0.2207 (5) | 0.154 (4) | 0.613 (9) |
H16A | 0.6520 | 0.5788 | −0.2150 | 0.230* | 0.613 (9) |
H16B | 0.7031 | 0.6667 | −0.2719 | 0.230* | 0.613 (9) |
H16C | 0.6797 | 0.7580 | −0.2042 | 0.230* | 0.613 (9) |
C14' | 0.7768 (13) | 0.6158 (15) | −0.1097 (5) | 0.076 (4) | 0.387 (9) |
H14C | 0.8496 | 0.6457 | −0.0940 | 0.091* | 0.387 (9) |
H14D | 0.7337 | 0.7037 | −0.1018 | 0.091* | 0.387 (9) |
C15' | 0.7494 (10) | 0.5634 (13) | −0.1926 (4) | 0.101 (4) | 0.387 (9) |
H15C | 0.7920 | 0.4746 | −0.2002 | 0.121* | 0.387 (9) |
H15D | 0.6765 | 0.5343 | −0.2083 | 0.121* | 0.387 (9) |
C16' | 0.7727 (11) | 0.7057 (14) | −0.2344 (5) | 0.117 (4) | 0.387 (9) |
H16D | 0.7340 | 0.7943 | −0.2230 | 0.175* | 0.387 (9) |
H16E | 0.7528 | 0.6849 | −0.2866 | 0.175* | 0.387 (9) |
H16F | 0.8460 | 0.7285 | −0.2204 | 0.175* | 0.387 (9) |
C17 | 0.90741 (18) | 0.5630 (3) | 0.18900 (13) | 0.0555 (7) | |
H17A | 0.8906 | 0.5818 | 0.2364 | 0.067* | |
H17B | 0.9667 | 0.4920 | 0.1975 | 0.067* | |
C18 | 0.93996 (16) | 0.7166 (3) | 0.16112 (12) | 0.0475 (6) | |
C19 | 0.99200 (17) | 0.7229 (3) | 0.10411 (13) | 0.0509 (6) | |
H19 | 1.0040 | 0.6301 | 0.0808 | 0.061* | |
C20 | 1.02611 (18) | 0.8632 (3) | 0.08140 (14) | 0.0543 (6) | |
H20 | 1.0604 | 0.8644 | 0.0429 | 0.065* | |
C21 | 1.00975 (19) | 1.0019 (3) | 0.11538 (14) | 0.0593 (7) | |
H21 | 1.0336 | 1.0966 | 0.1004 | 0.071* | |
C22 | 0.9581 (2) | 0.9992 (3) | 0.17149 (15) | 0.0643 (7) | |
H22 | 0.9465 | 1.0925 | 0.1945 | 0.077* | |
C23 | 0.92311 (19) | 0.8578 (3) | 0.19387 (13) | 0.0575 (7) | |
H23 | 0.8876 | 0.8575 | 0.2317 | 0.069* | |
N1 | 0.60676 (14) | 0.6380 (2) | −0.00223 (10) | 0.0468 (5) | |
N2 | 0.75950 (15) | 0.4872 (2) | 0.01036 (11) | 0.0521 (5) | |
N3 | 0.72009 (13) | 0.5741 (2) | 0.11365 (9) | 0.0476 (5) | |
O1 | 0.69271 (13) | 0.6488 (2) | 0.22618 (9) | 0.0653 (5) | |
O2 | 0.91073 (15) | 0.3495 (2) | 0.05804 (11) | 0.0710 (6) | |
S1 | 0.48079 (5) | 0.82378 (9) | 0.15079 (3) | 0.0585 (3) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0434 (12) | 0.0490 (14) | 0.0430 (12) | −0.0121 (10) | 0.0076 (10) | −0.0026 (10) |
C2 | 0.0530 (14) | 0.0616 (16) | 0.0450 (13) | −0.0097 (12) | 0.0054 (11) | −0.0037 (11) |
C3 | 0.0555 (15) | 0.0682 (18) | 0.0539 (14) | −0.0071 (13) | −0.0001 (12) | 0.0033 (13) |
C4 | 0.0513 (15) | 0.0627 (18) | 0.0779 (19) | 0.0005 (13) | 0.0037 (14) | −0.0013 (15) |
C5 | 0.0517 (14) | 0.0638 (17) | 0.0666 (16) | −0.0008 (12) | 0.0149 (12) | −0.0094 (13) |
C6 | 0.0454 (13) | 0.0577 (15) | 0.0463 (13) | −0.0114 (11) | 0.0093 (11) | −0.0051 (11) |
C7 | 0.0422 (12) | 0.0504 (14) | 0.0396 (11) | −0.0098 (10) | 0.0092 (10) | −0.0035 (10) |
C8 | 0.0448 (12) | 0.0572 (15) | 0.0391 (12) | −0.0085 (11) | 0.0132 (10) | −0.0015 (10) |
C9 | 0.0477 (13) | 0.0636 (16) | 0.0390 (12) | −0.0122 (11) | 0.0124 (10) | 0.0058 (11) |
C10 | 0.0520 (13) | 0.0441 (13) | 0.0422 (12) | −0.0078 (11) | 0.0150 (11) | −0.0013 (10) |
C11 | 0.0602 (15) | 0.0419 (14) | 0.0678 (16) | −0.0027 (12) | 0.0170 (13) | 0.0062 (12) |
C12 | 0.0559 (14) | 0.0524 (15) | 0.0562 (14) | −0.0005 (11) | 0.0154 (12) | 0.0185 (12) |
C13 | 0.0673 (16) | 0.0719 (19) | 0.0535 (15) | 0.0011 (14) | 0.0163 (13) | −0.0162 (14) |
C14 | 0.079 (5) | 0.065 (4) | 0.041 (3) | 0.019 (3) | 0.013 (3) | 0.008 (3) |
C15 | 0.101 (5) | 0.110 (5) | 0.047 (3) | −0.012 (4) | 0.010 (3) | 0.005 (3) |
C16 | 0.141 (7) | 0.175 (8) | 0.118 (6) | −0.013 (6) | −0.023 (5) | 0.032 (5) |
C14' | 0.096 (11) | 0.095 (8) | 0.037 (5) | 0.030 (6) | 0.014 (6) | 0.017 (5) |
C15' | 0.074 (8) | 0.147 (12) | 0.077 (7) | −0.010 (7) | 0.005 (6) | −0.006 (7) |
C16' | 0.137 (8) | 0.130 (8) | 0.089 (6) | −0.019 (6) | 0.037 (6) | 0.030 (6) |
C17 | 0.0504 (13) | 0.0694 (18) | 0.0454 (13) | 0.0088 (12) | 0.0080 (11) | 0.0162 (12) |
C18 | 0.0373 (11) | 0.0619 (16) | 0.0397 (12) | 0.0052 (11) | 0.0017 (10) | 0.0068 (11) |
C19 | 0.0527 (13) | 0.0534 (15) | 0.0484 (13) | 0.0044 (11) | 0.0151 (11) | −0.0039 (11) |
C20 | 0.0549 (14) | 0.0576 (17) | 0.0543 (14) | 0.0015 (12) | 0.0208 (12) | 0.0027 (12) |
C21 | 0.0570 (14) | 0.0509 (15) | 0.0690 (17) | −0.0023 (12) | 0.0125 (13) | 0.0031 (13) |
C22 | 0.0655 (16) | 0.0589 (18) | 0.0679 (17) | 0.0055 (14) | 0.0138 (14) | −0.0143 (14) |
C23 | 0.0510 (14) | 0.077 (2) | 0.0451 (13) | 0.0078 (13) | 0.0125 (11) | −0.0049 (13) |
N1 | 0.0472 (11) | 0.0540 (12) | 0.0394 (10) | −0.0041 (9) | 0.0104 (9) | −0.0025 (9) |
N2 | 0.0554 (11) | 0.0516 (12) | 0.0513 (11) | 0.0024 (9) | 0.0163 (10) | −0.0016 (9) |
N3 | 0.0447 (10) | 0.0579 (13) | 0.0406 (10) | −0.0026 (9) | 0.0106 (9) | 0.0074 (9) |
O1 | 0.0580 (10) | 0.1020 (15) | 0.0363 (9) | −0.0023 (10) | 0.0116 (8) | 0.0123 (9) |
O2 | 0.0705 (12) | 0.0522 (11) | 0.0911 (14) | 0.0144 (9) | 0.0202 (11) | −0.0008 (10) |
S1 | 0.0510 (4) | 0.0854 (6) | 0.0405 (4) | −0.0052 (3) | 0.0131 (3) | −0.0096 (3) |
C1—C2 | 1.400 (3) | C13—H13D | 0.9700 |
C1—C6 | 1.404 (3) | C14—C15 | 1.527 (7) |
C1—C7 | 1.431 (3) | C14—H14A | 0.9700 |
C2—C3 | 1.375 (4) | C14—H14B | 0.9700 |
C2—H2 | 0.9300 | C15—C16 | 1.482 (8) |
C3—C4 | 1.383 (4) | C15—H15A | 0.9700 |
C3—H3 | 0.9300 | C15—H15B | 0.9700 |
C4—C5 | 1.374 (3) | C16—H16A | 0.9600 |
C4—H4 | 0.9300 | C16—H16B | 0.9600 |
C5—C6 | 1.385 (3) | C16—H16C | 0.9600 |
C5—H5 | 0.9300 | C14'—C15' | 1.564 (9) |
C6—S1 | 1.743 (2) | C14'—H14C | 0.9700 |
C7—N1 | 1.373 (3) | C14'—H14D | 0.9700 |
C7—C8 | 1.385 (3) | C15'—C16' | 1.506 (9) |
C8—C9 | 1.426 (3) | C15'—H15C | 0.9700 |
C8—S1 | 1.732 (2) | C15'—H15D | 0.9700 |
C9—O1 | 1.228 (3) | C16'—H16D | 0.9600 |
C9—N3 | 1.398 (3) | C16'—H16E | 0.9600 |
C10—N1 | 1.283 (3) | C16'—H16F | 0.9600 |
C10—N2 | 1.372 (3) | C17—C18 | 1.503 (3) |
C10—N3 | 1.377 (3) | C17—H17A | 0.9700 |
C11—O2 | 1.207 (3) | C17—H17B | 0.9700 |
C11—N2 | 1.377 (3) | C18—C23 | 1.386 (3) |
C11—C12 | 1.518 (4) | C18—C19 | 1.389 (3) |
C12—N3 | 1.463 (3) | C19—C20 | 1.374 (3) |
C12—C17 | 1.529 (3) | C19—H19 | 0.9300 |
C12—H12 | 0.9800 | C20—C21 | 1.377 (3) |
C13—N2 | 1.466 (3) | C20—H20 | 0.9300 |
C13—C14' | 1.498 (9) | C21—C22 | 1.371 (4) |
C13—C14 | 1.519 (7) | C21—H21 | 0.9300 |
C13—H13A | 0.9700 | C22—C23 | 1.385 (4) |
C13—H13B | 0.9700 | C22—H22 | 0.9300 |
C13—H13C | 0.9700 | C23—H23 | 0.9300 |
C2—C1—C6 | 119.1 (2) | C13—C14—H14A | 108.6 |
C2—C1—C7 | 129.1 (2) | C15—C14—H14A | 108.6 |
C6—C1—C7 | 111.7 (2) | C13—C14—H14B | 108.6 |
C3—C2—C1 | 119.1 (2) | C15—C14—H14B | 108.6 |
C3—C2—H2 | 120.5 | H14A—C14—H14B | 107.6 |
C1—C2—H2 | 120.5 | C16—C15—C14 | 112.8 (6) |
C2—C3—C4 | 120.8 (2) | C16—C15—H15A | 109.0 |
C2—C3—H3 | 119.6 | C14—C15—H15A | 109.0 |
C4—C3—H3 | 119.6 | C16—C15—H15B | 109.0 |
C5—C4—C3 | 121.5 (2) | C14—C15—H15B | 109.0 |
C5—C4—H4 | 119.3 | H15A—C15—H15B | 107.8 |
C3—C4—H4 | 119.3 | C15—C16—H16A | 109.5 |
C4—C5—C6 | 118.2 (2) | C15—C16—H16B | 109.5 |
C4—C5—H5 | 120.9 | H16A—C16—H16B | 109.5 |
C6—C5—H5 | 120.9 | C15—C16—H16C | 109.5 |
C5—C6—C1 | 121.3 (2) | H16A—C16—H16C | 109.5 |
C5—C6—S1 | 126.4 (2) | H16B—C16—H16C | 109.5 |
C1—C6—S1 | 112.37 (18) | C13—C14'—C15' | 103.8 (7) |
N1—C7—C8 | 123.9 (2) | C13—C14'—H14C | 111.0 |
N1—C7—C1 | 124.2 (2) | C15'—C14'—H14C | 111.0 |
C8—C7—C1 | 111.9 (2) | C13—C14'—H14D | 111.0 |
C7—C8—C9 | 122.0 (2) | C15'—C14'—H14D | 111.0 |
C7—C8—S1 | 113.44 (18) | H14C—C14'—H14D | 109.0 |
C9—C8—S1 | 124.51 (17) | C16'—C15'—C14' | 104.6 (7) |
O1—C9—N3 | 121.5 (2) | C16'—C15'—H15C | 110.8 |
O1—C9—C8 | 127.5 (2) | C14'—C15'—H15C | 110.8 |
N3—C9—C8 | 110.96 (19) | C16'—C15'—H15D | 110.8 |
N1—C10—N2 | 124.6 (2) | C14'—C15'—H15D | 110.8 |
N1—C10—N3 | 127.2 (2) | H15C—C15'—H15D | 108.9 |
N2—C10—N3 | 108.2 (2) | C18—C17—C12 | 116.25 (18) |
O2—C11—N2 | 126.1 (3) | C18—C17—H17A | 108.2 |
O2—C11—C12 | 126.8 (2) | C12—C17—H17A | 108.2 |
N2—C11—C12 | 107.1 (2) | C18—C17—H17B | 108.2 |
N3—C12—C11 | 101.91 (19) | C12—C17—H17B | 108.2 |
N3—C12—C17 | 116.3 (2) | H17A—C17—H17B | 107.4 |
C11—C12—C17 | 112.8 (2) | C23—C18—C19 | 117.3 (2) |
N3—C12—H12 | 108.5 | C23—C18—C17 | 120.9 (2) |
C11—C12—H12 | 108.5 | C19—C18—C17 | 121.8 (2) |
C17—C12—H12 | 108.5 | C20—C19—C18 | 121.4 (2) |
N2—C13—C14' | 118.0 (5) | C20—C19—H19 | 119.3 |
N2—C13—C14 | 108.7 (3) | C18—C19—H19 | 119.3 |
C14'—C13—C14 | 18.3 (7) | C19—C20—C21 | 120.3 (2) |
N2—C13—H13A | 107.8 | C19—C20—H20 | 119.9 |
C14'—C13—H13A | 107.8 | C21—C20—H20 | 119.9 |
C14—C13—H13A | 126.0 | C22—C21—C20 | 119.5 (3) |
N2—C13—H13B | 107.8 | C22—C21—H21 | 120.2 |
C14'—C13—H13B | 107.8 | C20—C21—H21 | 120.2 |
C14—C13—H13B | 97.9 | C21—C22—C23 | 120.0 (2) |
H13A—C13—H13B | 107.1 | C21—C22—H22 | 120.0 |
N2—C13—H13C | 107.9 | C23—C22—H22 | 120.0 |
C14'—C13—H13C | 105.5 | C18—C23—C22 | 121.4 (2) |
C14—C13—H13C | 123.7 | C18—C23—H23 | 119.3 |
H13A—C13—H13C | 2.9 | C22—C23—H23 | 119.3 |
H13B—C13—H13C | 109.7 | C10—N1—C7 | 113.33 (18) |
N2—C13—H13D | 107.8 | C10—N2—C11 | 111.9 (2) |
C14'—C13—H13D | 109.9 | C10—N2—C13 | 122.7 (2) |
C14—C13—H13D | 100.5 | C11—N2—C13 | 125.4 (2) |
H13A—C13—H13D | 104.6 | C10—N3—C9 | 122.56 (19) |
H13B—C13—H13D | 2.8 | C10—N3—C12 | 110.89 (19) |
H13C—C13—H13D | 107.2 | C9—N3—C12 | 126.42 (18) |
C13—C14—C15 | 114.6 (6) | C8—S1—C6 | 90.52 (11) |
C6—C1—C2—C3 | −0.5 (3) | C18—C19—C20—C21 | 0.4 (4) |
C7—C1—C2—C3 | −178.2 (2) | C19—C20—C21—C22 | −0.8 (4) |
C1—C2—C3—C4 | −0.4 (4) | C20—C21—C22—C23 | 0.3 (4) |
C2—C3—C4—C5 | 0.6 (4) | C19—C18—C23—C22 | −1.0 (3) |
C3—C4—C5—C6 | 0.2 (4) | C17—C18—C23—C22 | 176.2 (2) |
C4—C5—C6—C1 | −1.2 (4) | C21—C22—C23—C18 | 0.6 (4) |
C4—C5—C6—S1 | 179.5 (2) | N2—C10—N1—C7 | 178.9 (2) |
C2—C1—C6—C5 | 1.3 (3) | N3—C10—N1—C7 | −0.4 (3) |
C7—C1—C6—C5 | 179.4 (2) | C8—C7—N1—C10 | −1.2 (3) |
C2—C1—C6—S1 | −179.29 (18) | C1—C7—N1—C10 | 179.3 (2) |
C7—C1—C6—S1 | −1.2 (2) | N1—C10—N2—C11 | −177.8 (2) |
C2—C1—C7—N1 | −2.0 (4) | N3—C10—N2—C11 | 1.6 (3) |
C6—C1—C7—N1 | −179.8 (2) | N1—C10—N2—C13 | 5.6 (4) |
C2—C1—C7—C8 | 178.4 (2) | N3—C10—N2—C13 | −174.9 (2) |
C6—C1—C7—C8 | 0.6 (3) | O2—C11—N2—C10 | −178.5 (2) |
N1—C7—C8—C9 | 2.1 (4) | C12—C11—N2—C10 | −0.3 (3) |
C1—C7—C8—C9 | −178.3 (2) | O2—C11—N2—C13 | −2.0 (4) |
N1—C7—C8—S1 | −179.33 (17) | C12—C11—N2—C13 | 176.1 (2) |
C1—C7—C8—S1 | 0.3 (3) | C14'—C13—N2—C10 | 69.0 (8) |
C7—C8—C9—O1 | 178.4 (2) | C14—C13—N2—C10 | 86.1 (5) |
S1—C8—C9—O1 | 0.0 (4) | C14'—C13—N2—C11 | −107.1 (8) |
C7—C8—C9—N3 | −1.4 (3) | C14—C13—N2—C11 | −90.0 (5) |
S1—C8—C9—N3 | −179.76 (16) | N1—C10—N3—C9 | 1.0 (4) |
O2—C11—C12—N3 | 177.1 (2) | N2—C10—N3—C9 | −178.42 (19) |
N2—C11—C12—N3 | −1.0 (2) | N1—C10—N3—C12 | 177.1 (2) |
O2—C11—C12—C17 | 51.7 (3) | N2—C10—N3—C12 | −2.3 (2) |
N2—C11—C12—C17 | −126.5 (2) | O1—C9—N3—C10 | −179.8 (2) |
N2—C13—C14—C15 | −176.5 (5) | C8—C9—N3—C10 | 0.0 (3) |
C14'—C13—C14—C15 | −53 (2) | O1—C9—N3—C12 | 4.7 (4) |
C13—C14—C15—C16 | 71.4 (10) | C8—C9—N3—C12 | −175.5 (2) |
N2—C13—C14'—C15' | −172.5 (7) | C11—C12—N3—C10 | 2.0 (2) |
C14—C13—C14'—C15' | 124 (3) | C17—C12—N3—C10 | 125.1 (2) |
C13—C14'—C15'—C16' | −179.4 (12) | C11—C12—N3—C9 | 177.9 (2) |
N3—C12—C17—C18 | −52.3 (3) | C17—C12—N3—C9 | −59.0 (3) |
C11—C12—C17—C18 | 65.0 (3) | C7—C8—S1—C6 | −0.82 (19) |
C12—C17—C18—C23 | 109.3 (3) | C9—C8—S1—C6 | 177.7 (2) |
C12—C17—C18—C19 | −73.6 (3) | C5—C6—S1—C8 | −179.5 (2) |
C23—C18—C19—C20 | 0.5 (3) | C1—C6—S1—C8 | 1.17 (18) |
C17—C18—C19—C20 | −176.7 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
C4—H4···Cg5i | 0.96 | 2.81 | 3.682 (3) | 156 |
Symmetry code: (i) −x+1, −y+2, −z. |
Experimental details
Crystal data | |
Chemical formula | C23H21N3O2S |
Mr | 403.49 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 298 |
a, b, c (Å) | 13.1732 (16), 8.4957 (11), 18.584 (2) |
β (°) | 103.345 (2) |
V (Å3) | 2023.7 (4) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.18 |
Crystal size (mm) | 0.26 × 0.16 × 0.10 |
Data collection | |
Diffractometer | Bruker SMART 4K CCD area0detector |
Absorption correction | Multi-scan (SADABS; Sheldrick, 2003) |
Tmin, Tmax | 0.954, 0.982 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 15534, 3958, 2896 |
Rint | 0.129 |
(sin θ/λ)max (Å−1) | 0.617 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.059, 0.170, 1.00 |
No. of reflections | 3958 |
No. of parameters | 292 |
No. of restraints | 22 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.26, −0.32 |
Computer programs: SMART (Bruker, 2001), SAINT-Plus (Bruker, 2001), SAINT-Plus, SHELXS97 (Sheldrick, 1997), SHELXL97 (Sheldrick, 1997), PLATON (Spek, 2003), SHELXTL (Sheldrick, 2001).
D—H···A | D—H | H···A | D···A | D—H···A |
C4—H4···Cg5i | 0.96 | 2.81 | 3.682 (3) | 156 |
Symmetry code: (i) −x+1, −y+2, −z. |
Acknowledgements
We gratefully acknowledge financial support of this work by the National Natural Science Foundation of China (project No. 20102001).
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
In the field of bioactive molecules, thienopyrimidine have received a great deal of attention (Walter, 1999a,b). Recently, There have being focused on the synthesis of the fused heterocycle systems containing thienopyrimidine via aza-Wittig reaction at room temperature(Ding et al., 2004). Herein, we present X-ray crystallographic analysis of the compound (I) in this paper, (Fig. 1), which may be used as a new precursor for obtaining bioactive molecules.
In the molecule, the bond lengths and angles are unexceptional (Cao et al., 2006; Xu et al., 2005). The four fused rings are close to coplanarity, with maximum deviations 0.060 (2)Å and -0.033 (3)Å for O3 and C11, respectively, which forms a dihedral angle of 72.60 (9)° with the adjacent C18—C23 phenyl ring.
Intermolecular C—H···π hydrogen bonds (Table 2) seem to be effective in stabilizing the crystal structure. Further stability the crystal structure is provided by offset π-π stacking interactions (Janiak, 2000) involving the thiophene (A), the imidazoe (B) and the C1—C6 benzene (C) rings. The A:C interplanar distance is 3.54 (1) Å with distances between adjacent ring centroids of 3.72 (1)Å (symmetry code relating the adjacent rings: 1 - x, 2 - y, -z). A further interaction occurs between B adjacent C rings (symmetry code: 1 - x, 1 - y, -z), with an interplanar distance of 3.56 (1)Å and a centroid-to-centroid distance of 3.80 (1)Å (Fig. 2).