organic compounds
Dimethylammonium bis(3-oxidonaphthalene-2-carboxylato)borate hemihydrate
aDepartment of Chemistry, Faculty of Arts and Sciences, University of Kırıkkale, Campus, Yahşihan, 71450 Kırıkkale, Turkey, bDepartment of Physics, Faculty of Arts and Sciences, University of Kırıkkale, Campus, Yahşihan, 71450 Kırıkkale, Turkey, and cStructural Research, Material Science, Darmstadt University of Technology, Petersen Strasse 23, D-64287 Darmstadt, Germany
*Correspondence e-mail: mustafatombul38@gmail.com
The title compound, C2H8N+·C22H12BO6−·0.5H2O, was synthesized under atmospheric conditions in the presence of dimethylformamide acting as a template. The structure is composed of [NH2(CH3)2]+ cations, bis(3-oxidonaphthalene-2-carboxylato)borate anions and water molecules. The water molecule lies on a twofold rotation axis. The stabilization of the comes from electrostatic interactions and is assisted by intermolecular O—H⋯O and N—H⋯O hydrogen bonds between the layers.
Related literature
For related literature, see: Carr et al. (2005); Downard et al. (2002); Errington et al. (1999); Green et al. (2000); Grice et al. (1999); Li & Liu (2006); Schubert et al. (2000); Tombul et al. (2003); Tombul, Guven, Büyükgüngör et al. (2007); Touboul et al. (2003); Zhang & Liu (2006); Zhang et al. (2005).
Experimental
Crystal data
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Data collection
Refinement
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Data collection: CrysAlis CCD (Oxford Diffraction, 2006); cell CrysAlis RED (Oxford Diffraction, 2006); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: Mercury (Macrae et al., 2006); software used to prepare material for publication: publCIF (Westrip, 2008).
Supporting information
https://doi.org/10.1107/S1600536807066810/at2517sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536807066810/at2517Isup2.hkl
For the preparation of title compound, (I), B(OH)3 (133 mg, 2.16 mmol,) was carefully added to a stirred DMF (10.0 ml) solution of 3-hydroxynaphthalene-2-carboxylic acid (875 mg, 4.65 mmol) at ambient temperature. The reaction mixture initially gave a brown solution which was stirred at 398 K for 2.5 h until all became a gel-like material. This product was then redissolved in the mixture of MeOH/CH2Cl2 (10 ml; 1:1) and allowed to stand at room temperature for a couple of hours, whereupon transparent and fine crystals were harvested. Yield, 79% (based on B(OH)3); Elemental analysis: (Found): C 65.48, H 5.18, N 3.19%. Calculated for C24H22O7NB: C 64.45, H 4.96, N 3.13%. 1H NMR (d6-DMSO-CDCl3, 298 K, TMS): δ (p.p.m.): All aromatic signals are observed between the region at 7.12 and 8.43. 13C NMR (d6-DMSO-CDCl3, 298 K, TMS): δ (p.p.m.): δ 119.7, 122.5, 128.1, 132.2, 142.4, 160.0, 161.6, 169.7, 177.0.
The H27 atom was located in a difference map and refined freely. Other H atoms were positioned geometrically and refined using a riding model, with C—H = 0.93–0.96 Å and N—H = 0.9530–1.0035 Å with Uiso(H) = 1.2 or 1.5 times Ueq(C,N) of the parent atom.
Owing to their rich structural chemistry and potential applications in mineralogy (Grice et al., 1999) and nonlinear optical materials (Touboul et al., 2003), borates have provided an abounding area of research for over half a century. Boron can form a large variety of compounds due to the complexity of the structures involved. Boron atom coordinate with oxygen not only in fourfold coordination (tetrahedral, BO4) but also in threefold coordination (triangular, BO3). These BO3 and BO4 groups favour polymerization via common corners into large polynuclear anion units including isolated or finite clusters, chains, sheets, and networks (Grice et al., 1999). Most borates synthesized and studied to date have been prepared under the templating effect of inorganic cations, such as alkali-metal, alkaline-earth, rare-earth or transition cations. Accordingly, many borate systems taking into account alkali metal, alkaline earth metal, rare-earth, and transition metals have been explored in recent years (Schubert et al., 2000). Currently, studies conducted in this area are primarily focused on improving existing materials utilized and search for new materials. In comparison to inorganic borates, synthesis,
and application of organic borates seem to be insufficient (Li & Liu, 2006; Zhang & Liu, 2006; Carr et al., 2005; Zhang et al., 2005; Downard et al., 2002; Green et al., 2000). As part of our ongoing study of the synthesis and structure of organoborate complexes (Errington et al., 1999; Tombul et al., 2003; Tombul, Guven, Büyükgüngör et al., 2007), we have prepared a new organically templated borate, (I), using dimethylformamide as the structure-directing agent.The
of (I) (Fig.1) consists of [BO4(C11H6O)2]- anions, [NH2(CH3)2]+ cations and water molecule. The [BO4(C11H6O)2]- anion consists of one set of distorted [BO4] tetrahedra and two sets of slightly deformed [C11H6O] planes with oxygen atoms as sharing vertexes. The boron atom is bonded to four oxygen atoms to form a highly tetrahedral environment (mean OBO bond angle of 109.46 (3)°). The B—O bond lengths are typical for such tetrahedral borates, with B—Ocarboxyl bond lengths (mean 1.499 (5) Å) being slightly longer than B—Ohyroxyl bond lengths (mean 1.427 (5) Å). Each [C11H6O] unit is almost planar, and both [C11H6O] units in BO4(C11H6O)2]- are nearly perpendicular to each other. The borate rings highly coplanar with the corresponding aryl rings [with 0.0779 Å r.m.s. deviation for Plane A (C1—C11/O1—O3) and 0.0648 Å r.m.s. deviation for Plane B (C12—C22/,O4—O6)]. The coordination planes (Planes C (O2, B1, O1) and D (O5, B1, O4) intersects at an angle of 89.73 (26) °. Dimethylammonium cation is distorted tetrahedral environment with CNC bond angle of 113.5 (4) ° and located with a large distance from the anion (B—N distance 6.108 (15) Å).In the
[BO4(C11H6O)2]- anions and [NH2(CH3)2]+ cations are discrete units and they interact both electrostatically and via N—H···O hydrogen bonds with N···O distances in the range 2.839 (4) Å – 2.872 (4) Å (Fig.2). The water molecule is also involved in normal, slightly bent, hydrogen bond with the borate anion at a distance of 3.012 (3) Å. The acceptors are all carboxylate O atoms of the aromatic ring (Table 2). For the synthesis of (I), dimethylformamide acts not only as the solvent, but also as the reactant and it decomposes under experimental conditions forming [NH2(CH3)2]+ cations.For related literature, see: Carr et al. (2005); Downard et al. (2002); Errington et al. (1999); Green et al. (2000); Grice et al. (1999); Li & Liu (2006); Schubert et al. (2000); Tombul et al. (2003); Tombul, Guven, Büyükgüngör et al. (2007); Touboul et al. (2003); Zhang & Liu (2006); Zhang et al. (2005).
Data collection: CrysAlis CCD (Oxford Diffraction, 2006); cell
CrysAlis RED (Oxford Diffraction, 2006); data reduction: CrysAlis RED (Oxford Diffraction, 2006); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: Mercury (Macrae et al., 2006).; software used to prepare material for publication: publCIF (Westrip, 2008).C2H8N+·C22H12BO6−·0.5H2O | F(000) = 1832 |
Mr = 438.24 | Dx = 1.367 Mg m−3 |
Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -C 2yc | Cell parameters from 2075 reflections |
a = 32.011 (3) Å | θ = 2.5–21.1° |
b = 9.774 (1) Å | µ = 0.10 mm−1 |
c = 14.742 (1) Å | T = 303 K |
β = 112.628 (7)° | Rod shape, light yellow |
V = 4257.2 (7) Å3 | 0.48 × 0.08 × 0.08 mm |
Z = 8 |
Oxford Diffraction Xcalibur diffractometer with a Sapphire CCD detector | 4321 independent reflections |
Radiation source: fine-focus sealed tube | 1708 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.079 |
Detector resolution: 8.4012 pixels mm-1 | θmax = 26.4°, θmin = 2.5° |
Rotation method data acquisition using ω and φ scans | h = −40→40 |
Absorption correction: numerical [absorption correction using a multifaceted crystal model based on expressions derived (Clark & Reid, 1995)] | k = −9→12 |
Tmin = 0.981, Tmax = 0.994 | l = −18→18 |
16173 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.093 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.152 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.12 | w = 1/[σ2(Fo2) + (0.0247P)2 + 7.7951P] where P = (Fo2 + 2Fc2)/3 |
4321 reflections | (Δ/σ)max < 0.001 |
299 parameters | Δρmax = 0.21 e Å−3 |
3 restraints | Δρmin = −0.23 e Å−3 |
C2H8N+·C22H12BO6−·0.5H2O | V = 4257.2 (7) Å3 |
Mr = 438.24 | Z = 8 |
Monoclinic, C2/c | Mo Kα radiation |
a = 32.011 (3) Å | µ = 0.10 mm−1 |
b = 9.774 (1) Å | T = 303 K |
c = 14.742 (1) Å | 0.48 × 0.08 × 0.08 mm |
β = 112.628 (7)° |
Oxford Diffraction Xcalibur diffractometer with a Sapphire CCD detector | 4321 independent reflections |
Absorption correction: numerical [absorption correction using a multifaceted crystal model based on expressions derived (Clark & Reid, 1995)] | 1708 reflections with I > 2σ(I) |
Tmin = 0.981, Tmax = 0.994 | Rint = 0.079 |
16173 measured reflections |
R[F2 > 2σ(F2)] = 0.093 | 3 restraints |
wR(F2) = 0.152 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.12 | Δρmax = 0.21 e Å−3 |
4321 reflections | Δρmin = −0.23 e Å−3 |
299 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | −0.01987 (8) | 0.4067 (3) | 0.37753 (18) | 0.0487 (8) | |
O2 | −0.03911 (9) | 0.2873 (3) | 0.5007 (2) | 0.0520 (8) | |
O3 | 0.01354 (9) | 0.2159 (3) | 0.6392 (2) | 0.0643 (9) | |
O4 | −0.09425 (8) | 0.4084 (3) | 0.37123 (19) | 0.0474 (7) | |
O5 | −0.06167 (9) | 0.2000 (3) | 0.33692 (19) | 0.0498 (8) | |
O6 | −0.10420 (9) | 0.0190 (3) | 0.2734 (2) | 0.0608 (9) | |
C1 | 0.02357 (13) | 0.3624 (4) | 0.4222 (3) | 0.0421 (11) | |
C2 | 0.05411 (13) | 0.3882 (4) | 0.3807 (3) | 0.0443 (11) | |
H2 | 0.0451 | 0.4358 | 0.3216 | 0.053* | |
C3 | 0.09922 (13) | 0.3435 (4) | 0.4264 (3) | 0.0423 (11) | |
C4 | 0.13136 (14) | 0.3649 (5) | 0.3838 (3) | 0.0564 (13) | |
H4 | 0.1230 | 0.4126 | 0.3249 | 0.068* | |
C5 | 0.17420 (16) | 0.3169 (5) | 0.4274 (4) | 0.0693 (15) | |
H5 | 0.1947 | 0.3314 | 0.3976 | 0.083* | |
C6 | 0.18799 (15) | 0.2461 (5) | 0.5163 (4) | 0.0712 (15) | |
H6 | 0.2175 | 0.2135 | 0.5452 | 0.085* | |
C7 | 0.15843 (14) | 0.2246 (5) | 0.5608 (3) | 0.0615 (13) | |
H7 | 0.1679 | 0.1784 | 0.6205 | 0.074* | |
C8 | 0.11340 (13) | 0.2721 (4) | 0.5170 (3) | 0.0443 (11) | |
C9 | 0.08061 (13) | 0.2483 (4) | 0.5579 (3) | 0.0457 (11) | |
H9 | 0.0890 | 0.2026 | 0.6176 | 0.055* | |
C10 | 0.03693 (13) | 0.2910 (4) | 0.5115 (3) | 0.0398 (10) | |
C11 | 0.00351 (14) | 0.2617 (4) | 0.5560 (4) | 0.0482 (12) | |
C12 | −0.13259 (13) | 0.3378 (4) | 0.3605 (3) | 0.0406 (10) | |
C13 | −0.16686 (12) | 0.4009 (4) | 0.3771 (3) | 0.0462 (11) | |
H13 | −0.1638 | 0.4923 | 0.3962 | 0.055* | |
C14 | −0.20682 (13) | 0.3303 (5) | 0.3661 (3) | 0.0470 (12) | |
C15 | −0.24235 (14) | 0.3923 (5) | 0.3855 (3) | 0.0686 (15) | |
H15 | −0.2397 | 0.4828 | 0.4065 | 0.082* | |
C16 | −0.28029 (16) | 0.3202 (6) | 0.3738 (4) | 0.0833 (17) | |
H16 | −0.3035 | 0.3628 | 0.3863 | 0.100* | |
C17 | −0.28545 (16) | 0.1834 (6) | 0.3434 (4) | 0.0858 (17) | |
H17 | −0.3117 | 0.1356 | 0.3362 | 0.103* | |
C18 | −0.25178 (14) | 0.1214 (5) | 0.3245 (3) | 0.0694 (14) | |
H18 | −0.2551 | 0.0304 | 0.3046 | 0.083* | |
C19 | −0.21161 (13) | 0.1922 (5) | 0.3345 (3) | 0.0457 (11) | |
C20 | −0.17613 (13) | 0.1312 (4) | 0.3159 (3) | 0.0463 (11) | |
H20 | −0.1792 | 0.0412 | 0.2937 | 0.056* | |
C21 | −0.13709 (12) | 0.2008 (4) | 0.3295 (3) | 0.0379 (10) | |
C22 | −0.10027 (14) | 0.1318 (5) | 0.3107 (3) | 0.0466 (11) | |
B1 | −0.05381 (15) | 0.3300 (5) | 0.3956 (4) | 0.0444 (13) | |
N5 | −0.06832 (10) | 0.8557 (4) | 0.1613 (2) | 0.0518 (9) | |
H25A | −0.0368 | 0.8299 | 0.1688 | 0.062* | |
H25B | −0.0619 | 0.9008 | 0.2225 | 0.062* | |
C23 | −0.09329 (15) | 0.7284 (5) | 0.1570 (4) | 0.0791 (16) | |
H23A | −0.0763 | 0.6713 | 0.2117 | 0.095* | |
H23B | −0.0979 | 0.6813 | 0.0967 | 0.095* | |
H23C | −0.1221 | 0.7494 | 0.1596 | 0.095* | |
C24 | −0.09181 (16) | 0.9503 (5) | 0.0806 (3) | 0.0898 (18) | |
H24A | −0.0997 | 0.9036 | 0.0190 | 0.108* | |
H24B | −0.0723 | 1.0261 | 0.0831 | 0.108* | |
H24C | −0.1188 | 0.9833 | 0.0869 | 0.108* | |
O7 | 0.0000 | 0.0715 (4) | 0.2500 | 0.0849 (15) | |
H27 | −0.0156 (12) | 0.1236 (14) | 0.271 (3) | 0.102* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0322 (16) | 0.061 (2) | 0.0533 (19) | −0.0011 (15) | 0.0168 (15) | 0.0074 (15) |
O2 | 0.0364 (16) | 0.071 (2) | 0.053 (2) | −0.0023 (16) | 0.0217 (15) | 0.0056 (17) |
O3 | 0.0504 (18) | 0.088 (3) | 0.058 (2) | −0.0010 (17) | 0.0247 (17) | 0.0188 (19) |
O4 | 0.0370 (16) | 0.0427 (19) | 0.0651 (19) | −0.0031 (14) | 0.0226 (15) | −0.0049 (15) |
O5 | 0.0442 (17) | 0.047 (2) | 0.063 (2) | 0.0006 (15) | 0.0262 (16) | −0.0089 (16) |
O6 | 0.0632 (19) | 0.051 (2) | 0.078 (2) | 0.0015 (17) | 0.0375 (17) | −0.0150 (18) |
C1 | 0.037 (3) | 0.042 (3) | 0.048 (3) | −0.006 (2) | 0.017 (2) | 0.000 (2) |
C2 | 0.040 (3) | 0.050 (3) | 0.045 (3) | −0.008 (2) | 0.020 (2) | 0.000 (2) |
C3 | 0.038 (3) | 0.043 (3) | 0.049 (3) | −0.010 (2) | 0.019 (2) | −0.012 (2) |
C4 | 0.046 (3) | 0.067 (3) | 0.067 (3) | −0.013 (3) | 0.033 (3) | −0.011 (3) |
C5 | 0.052 (3) | 0.084 (4) | 0.088 (4) | −0.009 (3) | 0.045 (3) | −0.012 (3) |
C6 | 0.040 (3) | 0.076 (4) | 0.103 (4) | 0.001 (3) | 0.033 (3) | 0.001 (3) |
C7 | 0.043 (3) | 0.060 (3) | 0.079 (3) | 0.003 (2) | 0.020 (3) | 0.007 (3) |
C8 | 0.038 (3) | 0.042 (3) | 0.049 (3) | −0.004 (2) | 0.012 (2) | −0.003 (2) |
C9 | 0.046 (3) | 0.045 (3) | 0.049 (3) | −0.003 (2) | 0.021 (2) | 0.000 (2) |
C10 | 0.035 (2) | 0.040 (3) | 0.048 (3) | −0.005 (2) | 0.021 (2) | 0.001 (2) |
C11 | 0.046 (3) | 0.047 (3) | 0.056 (3) | −0.004 (2) | 0.024 (3) | −0.002 (3) |
C12 | 0.038 (2) | 0.038 (3) | 0.047 (3) | −0.001 (2) | 0.017 (2) | −0.002 (2) |
C13 | 0.040 (2) | 0.041 (3) | 0.060 (3) | 0.001 (2) | 0.021 (2) | −0.008 (2) |
C14 | 0.034 (2) | 0.054 (3) | 0.056 (3) | 0.005 (2) | 0.020 (2) | −0.003 (2) |
C15 | 0.047 (3) | 0.069 (4) | 0.100 (4) | 0.002 (3) | 0.039 (3) | −0.007 (3) |
C16 | 0.054 (3) | 0.085 (5) | 0.123 (5) | 0.004 (3) | 0.048 (3) | −0.006 (4) |
C17 | 0.049 (3) | 0.086 (5) | 0.133 (5) | −0.015 (3) | 0.046 (3) | −0.006 (4) |
C18 | 0.053 (3) | 0.070 (4) | 0.089 (4) | −0.011 (3) | 0.031 (3) | −0.004 (3) |
C19 | 0.035 (2) | 0.053 (3) | 0.050 (3) | −0.003 (2) | 0.018 (2) | 0.001 (2) |
C20 | 0.048 (3) | 0.045 (3) | 0.047 (3) | −0.002 (2) | 0.019 (2) | −0.005 (2) |
C21 | 0.033 (2) | 0.041 (3) | 0.040 (3) | 0.004 (2) | 0.014 (2) | 0.001 (2) |
C22 | 0.049 (3) | 0.045 (3) | 0.048 (3) | 0.001 (3) | 0.021 (2) | −0.002 (2) |
B1 | 0.027 (3) | 0.057 (4) | 0.050 (3) | −0.002 (3) | 0.017 (3) | 0.001 (3) |
N5 | 0.048 (2) | 0.056 (2) | 0.052 (2) | 0.006 (2) | 0.0200 (19) | −0.003 (2) |
C23 | 0.069 (3) | 0.074 (4) | 0.097 (4) | −0.020 (3) | 0.035 (3) | −0.026 (3) |
C24 | 0.106 (4) | 0.096 (5) | 0.065 (4) | 0.040 (4) | 0.029 (3) | 0.013 (3) |
O7 | 0.086 (4) | 0.060 (3) | 0.135 (4) | 0.000 | 0.071 (3) | 0.000 |
O1—C1 | 1.360 (4) | C12—C21 | 1.405 (5) |
O1—B1 | 1.427 (5) | C13—C14 | 1.406 (5) |
O2—C11 | 1.316 (4) | C13—H13 | 0.9300 |
O2—B1 | 1.496 (5) | C14—C15 | 1.412 (5) |
O3—C11 | 1.227 (4) | C14—C19 | 1.417 (5) |
O4—C12 | 1.363 (4) | C15—C16 | 1.356 (6) |
O4—B1 | 1.426 (5) | C15—H15 | 0.9300 |
O5—C22 | 1.324 (4) | C16—C17 | 1.399 (6) |
O5—B1 | 1.502 (5) | C16—H16 | 0.9300 |
O6—C22 | 1.216 (4) | C17—C18 | 1.355 (6) |
C1—C2 | 1.362 (5) | C17—H17 | 0.9300 |
C1—C10 | 1.404 (5) | C18—C19 | 1.417 (5) |
C2—C3 | 1.408 (5) | C18—H18 | 0.9300 |
C2—H2 | 0.9300 | C19—C20 | 1.400 (5) |
C3—C4 | 1.412 (5) | C20—C21 | 1.368 (5) |
C3—C8 | 1.417 (5) | C20—H20 | 0.9300 |
C4—C5 | 1.355 (6) | C21—C22 | 1.473 (5) |
C4—H4 | 0.9300 | N5—C24 | 1.466 (5) |
C5—C6 | 1.395 (6) | N5—C23 | 1.467 (5) |
C5—H5 | 0.9300 | N5—H25A | 1.0035 |
C6—C7 | 1.360 (5) | N5—H25B | 0.9530 |
C6—H6 | 0.9300 | C23—H23A | 0.9600 |
C7—C8 | 1.412 (5) | C23—H23B | 0.9600 |
C7—H7 | 0.9300 | C23—H23C | 0.9600 |
C8—C9 | 1.416 (5) | C24—H24A | 0.9600 |
C9—C10 | 1.364 (5) | C24—H24B | 0.9600 |
C9—H9 | 0.9300 | C24—H24C | 0.9600 |
C10—C11 | 1.482 (5) | O7—H27 | 0.85 (3) |
C12—C13 | 1.361 (5) | ||
C1—O1—B1 | 116.9 (3) | C16—C15—H15 | 119.9 |
C11—O2—B1 | 122.2 (3) | C14—C15—H15 | 119.9 |
C12—O4—B1 | 116.5 (3) | C15—C16—C17 | 121.8 (5) |
C22—O5—B1 | 121.6 (3) | C15—C16—H16 | 119.1 |
O1—C1—C2 | 120.0 (4) | C17—C16—H16 | 119.1 |
O1—C1—C10 | 119.9 (4) | C18—C17—C16 | 119.2 (5) |
C2—C1—C10 | 120.1 (4) | C18—C17—H17 | 120.4 |
C1—C2—C3 | 120.5 (4) | C16—C17—H17 | 120.4 |
C1—C2—H2 | 119.7 | C17—C18—C19 | 121.4 (5) |
C3—C2—H2 | 119.7 | C17—C18—H18 | 119.3 |
C2—C3—C4 | 121.9 (4) | C19—C18—H18 | 119.3 |
C2—C3—C8 | 120.2 (4) | C20—C19—C18 | 122.9 (4) |
C4—C3—C8 | 117.9 (4) | C20—C19—C14 | 118.5 (4) |
C5—C4—C3 | 121.0 (5) | C18—C19—C14 | 118.6 (4) |
C5—C4—H4 | 119.5 | C21—C20—C19 | 121.6 (4) |
C3—C4—H4 | 119.5 | C21—C20—H20 | 119.2 |
C4—C5—C6 | 120.9 (4) | C19—C20—H20 | 119.2 |
C4—C5—H5 | 119.5 | C20—C21—C12 | 119.7 (4) |
C6—C5—H5 | 119.5 | C20—C21—C22 | 119.8 (4) |
C7—C6—C5 | 120.2 (4) | C12—C21—C22 | 120.5 (4) |
C7—C6—H6 | 119.9 | O6—C22—O5 | 120.7 (4) |
C5—C6—H6 | 119.9 | O6—C22—C21 | 123.3 (4) |
C6—C7—C8 | 120.4 (5) | O5—C22—C21 | 116.0 (4) |
C6—C7—H7 | 119.8 | O4—B1—O1 | 110.7 (4) |
C8—C7—H7 | 119.8 | O4—B1—O2 | 107.7 (3) |
C7—C8—C9 | 123.0 (4) | O1—B1—O2 | 112.4 (3) |
C7—C8—C3 | 119.6 (4) | O4—B1—O5 | 112.0 (3) |
C9—C8—C3 | 117.4 (4) | O1—B1—O5 | 107.9 (3) |
C10—C9—C8 | 121.4 (4) | O2—B1—O5 | 106.1 (4) |
C10—C9—H9 | 119.3 | C24—N5—C23 | 113.5 (4) |
C8—C9—H9 | 119.3 | C24—N5—H25A | 115.4 |
C9—C10—C1 | 120.4 (4) | C23—N5—H25A | 107.4 |
C9—C10—C11 | 119.6 (4) | C24—N5—H25B | 109.4 |
C1—C10—C11 | 120.0 (4) | C23—N5—H25B | 110.4 |
O3—C11—O2 | 119.9 (4) | H25A—N5—H25B | 99.9 |
O3—C11—C10 | 123.9 (4) | N5—C23—H23A | 109.5 |
O2—C11—C10 | 116.2 (4) | N5—C23—H23B | 109.5 |
C13—C12—O4 | 120.1 (4) | H23A—C23—H23B | 109.5 |
C13—C12—C21 | 120.1 (4) | N5—C23—H23C | 109.5 |
O4—C12—C21 | 119.7 (4) | H23A—C23—H23C | 109.5 |
C12—C13—C14 | 121.2 (4) | H23B—C23—H23C | 109.5 |
C12—C13—H13 | 119.4 | N5—C24—H24A | 109.5 |
C14—C13—H13 | 119.4 | N5—C24—H24B | 109.5 |
C13—C14—C15 | 122.3 (4) | H24A—C24—H24B | 109.5 |
C13—C14—C19 | 118.9 (4) | N5—C24—H24C | 109.5 |
C15—C14—C19 | 118.8 (4) | H24A—C24—H24C | 109.5 |
C16—C15—C14 | 120.2 (5) | H24B—C24—H24C | 109.5 |
B1—O1—C1—C2 | 152.4 (4) | C13—C14—C15—C16 | 180.0 (4) |
B1—O1—C1—C10 | −28.0 (5) | C19—C14—C15—C16 | −0.2 (7) |
O1—C1—C2—C3 | 179.7 (4) | C14—C15—C16—C17 | 0.6 (8) |
C10—C1—C2—C3 | 0.1 (6) | C15—C16—C17—C18 | −0.4 (9) |
C1—C2—C3—C4 | 178.0 (4) | C16—C17—C18—C19 | −0.3 (8) |
C1—C2—C3—C8 | −0.6 (6) | C17—C18—C19—C20 | 179.8 (5) |
C2—C3—C4—C5 | −177.7 (4) | C17—C18—C19—C14 | 0.8 (7) |
C8—C3—C4—C5 | 1.0 (6) | C13—C14—C19—C20 | 0.2 (6) |
C3—C4—C5—C6 | −0.7 (7) | C15—C14—C19—C20 | −179.6 (4) |
C4—C5—C6—C7 | −0.2 (8) | C13—C14—C19—C18 | 179.3 (4) |
C5—C6—C7—C8 | 0.8 (7) | C15—C14—C19—C18 | −0.5 (6) |
C6—C7—C8—C9 | 177.5 (4) | C18—C19—C20—C21 | −177.6 (4) |
C6—C7—C8—C3 | −0.5 (6) | C14—C19—C20—C21 | 1.4 (6) |
C2—C3—C8—C7 | 178.3 (4) | C19—C20—C21—C12 | −1.7 (6) |
C4—C3—C8—C7 | −0.4 (6) | C19—C20—C21—C22 | 178.9 (4) |
C2—C3—C8—C9 | 0.2 (6) | C13—C12—C21—C20 | 0.2 (6) |
C4—C3—C8—C9 | −178.5 (4) | O4—C12—C21—C20 | −178.1 (3) |
C7—C8—C9—C10 | −177.3 (4) | C13—C12—C21—C22 | 179.6 (4) |
C3—C8—C9—C10 | 0.7 (6) | O4—C12—C21—C22 | 1.4 (5) |
C8—C9—C10—C1 | −1.2 (6) | B1—O5—C22—O6 | −171.3 (4) |
C8—C9—C10—C11 | 178.9 (4) | B1—O5—C22—C21 | 8.7 (5) |
O1—C1—C10—C9 | −178.8 (4) | C20—C21—C22—O6 | 8.0 (6) |
C2—C1—C10—C9 | 0.8 (6) | C12—C21—C22—O6 | −171.4 (4) |
O1—C1—C10—C11 | 1.1 (6) | C20—C21—C22—O5 | −172.0 (4) |
C2—C1—C10—C11 | −179.3 (4) | C12—C21—C22—O5 | 8.5 (5) |
B1—O2—C11—O3 | −173.9 (4) | C12—O4—B1—O1 | 163.5 (3) |
B1—O2—C11—C10 | 6.0 (6) | C12—O4—B1—O2 | −73.2 (4) |
C9—C10—C11—O3 | 9.7 (6) | C12—O4—B1—O5 | 43.1 (5) |
C1—C10—C11—O3 | −170.2 (4) | C1—O1—B1—O4 | 161.8 (3) |
C9—C10—C11—O2 | −170.2 (4) | C1—O1—B1—O2 | 41.4 (5) |
C1—C10—C11—O2 | 9.9 (6) | C1—O1—B1—O5 | −75.3 (4) |
B1—O4—C12—C13 | 153.2 (4) | C11—O2—B1—O4 | −153.3 (4) |
B1—O4—C12—C21 | −28.6 (5) | C11—O2—B1—O1 | −31.1 (6) |
O4—C12—C13—C14 | 179.7 (4) | C11—O2—B1—O5 | 86.6 (4) |
C21—C12—C13—C14 | 1.5 (6) | C22—O5—B1—O4 | −34.1 (5) |
C12—C13—C14—C15 | 178.2 (4) | C22—O5—B1—O1 | −156.1 (3) |
C12—C13—C14—C19 | −1.7 (6) | C22—O5—B1—O2 | 83.2 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
N5—H25A···O3i | 1.00 | 1.88 | 2.849 (4) | 162 |
N5—H25B···O6ii | 0.95 | 2.12 | 2.839 (4) | 131 |
N5—H25B···O3iii | 0.95 | 2.33 | 2.871 (4) | 116 |
O7—H27···O5 | 0.85 (3) | 2.18 (4) | 3.010 (3) | 163 (1) |
Symmetry codes: (i) x, −y+1, z−1/2; (ii) x, y+1, z; (iii) −x, −y+1, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C2H8N+·C22H12BO6−·0.5H2O |
Mr | 438.24 |
Crystal system, space group | Monoclinic, C2/c |
Temperature (K) | 303 |
a, b, c (Å) | 32.011 (3), 9.774 (1), 14.742 (1) |
β (°) | 112.628 (7) |
V (Å3) | 4257.2 (7) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 0.10 |
Crystal size (mm) | 0.48 × 0.08 × 0.08 |
Data collection | |
Diffractometer | Oxford Diffraction Xcalibur diffractometer with a Sapphire CCD detector |
Absorption correction | Numerical [absorption correction using a multifaceted crystal model based on expressions derived (Clark & Reid, 1995)] |
Tmin, Tmax | 0.981, 0.994 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 16173, 4321, 1708 |
Rint | 0.079 |
(sin θ/λ)max (Å−1) | 0.625 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.093, 0.152, 1.12 |
No. of reflections | 4321 |
No. of parameters | 299 |
No. of restraints | 3 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.21, −0.23 |
Computer programs: CrysAlis CCD (Oxford Diffraction, 2006), CrysAlis RED (Oxford Diffraction, 2006), SHELXS97 (Sheldrick, 1997), SHELXL97 (Sheldrick, 1997), Mercury (Macrae et al., 2006)., publCIF (Westrip, 2008).
O1—B1 | 1.427 (5) | O4—B1 | 1.426 (5) |
O2—B1 | 1.496 (5) | O5—B1 | 1.502 (5) |
O4—B1—O1 | 110.7 (4) | O4—B1—O5 | 112.0 (3) |
O4—B1—O2 | 107.7 (3) | O1—B1—O5 | 107.9 (3) |
O1—B1—O2 | 112.4 (3) | O2—B1—O5 | 106.1 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
N5—H25A···O3i | 1.00 | 1.88 | 2.849 (4) | 161.8 |
N5—H25B···O6ii | 0.95 | 2.12 | 2.839 (4) | 130.7 |
N5—H25B···O3iii | 0.95 | 2.33 | 2.871 (4) | 115.5 |
O7—H27···O5 | 0.85 (3) | 2.18 (4) | 3.010 (3) | 163.3 (12) |
Symmetry codes: (i) x, −y+1, z−1/2; (ii) x, y+1, z; (iii) −x, −y+1, −z+1. |
Acknowledgements
The authors gratefully acknowledge Kırıkkale University Scientific Research Centre for financial support of this work (grant No. 2007/49) and Professor Dr Hartmut Fuess, Institute of Materials Science, Darmstadt University of Technology, Germany, for use of the diffractometer.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Owing to their rich structural chemistry and potential applications in mineralogy (Grice et al., 1999) and nonlinear optical materials (Touboul et al., 2003), borates have provided an abounding area of research for over half a century. Boron can form a large variety of compounds due to the complexity of the structures involved. Boron atom coordinate with oxygen not only in fourfold coordination (tetrahedral, BO4) but also in threefold coordination (triangular, BO3). These BO3 and BO4 groups favour polymerization via common corners into large polynuclear anion units including isolated or finite clusters, chains, sheets, and networks (Grice et al., 1999). Most borates synthesized and studied to date have been prepared under the templating effect of inorganic cations, such as alkali-metal, alkaline-earth, rare-earth or transition cations. Accordingly, many borate systems taking into account alkali metal, alkaline earth metal, rare-earth, and transition metals have been explored in recent years (Schubert et al., 2000). Currently, studies conducted in this area are primarily focused on improving existing materials utilized and search for new materials. In comparison to inorganic borates, synthesis, crystal structure and application of organic borates seem to be insufficient (Li & Liu, 2006; Zhang & Liu, 2006; Carr et al., 2005; Zhang et al., 2005; Downard et al., 2002; Green et al., 2000). As part of our ongoing study of the synthesis and structure of organoborate complexes (Errington et al., 1999; Tombul et al., 2003; Tombul, Guven, Büyükgüngör et al., 2007), we have prepared a new organically templated borate, (I), using dimethylformamide as the structure-directing agent.
The asymmetric unit of (I) (Fig.1) consists of [BO4(C11H6O)2]- anions, [NH2(CH3)2]+ cations and water molecule. The [BO4(C11H6O)2]- anion consists of one set of distorted [BO4] tetrahedra and two sets of slightly deformed [C11H6O] planes with oxygen atoms as sharing vertexes. The boron atom is bonded to four oxygen atoms to form a highly tetrahedral environment (mean OBO bond angle of 109.46 (3)°). The B—O bond lengths are typical for such tetrahedral borates, with B—Ocarboxyl bond lengths (mean 1.499 (5) Å) being slightly longer than B—Ohyroxyl bond lengths (mean 1.427 (5) Å). Each [C11H6O] unit is almost planar, and both [C11H6O] units in BO4(C11H6O)2]- are nearly perpendicular to each other. The borate rings highly coplanar with the corresponding aryl rings [with 0.0779 Å r.m.s. deviation for Plane A (C1—C11/O1—O3) and 0.0648 Å r.m.s. deviation for Plane B (C12—C22/,O4—O6)]. The coordination planes (Planes C (O2, B1, O1) and D (O5, B1, O4) intersects at an angle of 89.73 (26) °. Dimethylammonium cation is distorted tetrahedral environment with CNC bond angle of 113.5 (4) ° and located with a large distance from the anion (B—N distance 6.108 (15) Å).
In the crystal structure [BO4(C11H6O)2]- anions and [NH2(CH3)2]+ cations are discrete units and they interact both electrostatically and via N—H···O hydrogen bonds with N···O distances in the range 2.839 (4) Å – 2.872 (4) Å (Fig.2). The water molecule is also involved in normal, slightly bent, hydrogen bond with the borate anion at a distance of 3.012 (3) Å. The acceptors are all carboxylate O atoms of the aromatic ring (Table 2). For the synthesis of (I), dimethylformamide acts not only as the solvent, but also as the reactant and it decomposes under experimental conditions forming [NH2(CH3)2]+ cations.