organic compounds
2-(2,3,5,6-Tetrafluoro-4-iodoanilino)ethanol
aDipartimento di Chimica, Materiali e Ingegeria Chimica 'G. Natta', Politecnico di Milano, Via Mancinelli 7, I-20131 Milano, Italy, and bIstituto di Scienze e Tecnologie Molecolari del CNR, Via Golgi 19, 20133 Milano, Italy
*Correspondence e-mail: tullio.pilati@istm.cnr.it
The reaction of 2-aminoethanol and iodopentafluorobenzene in the presence of K2CO3 gave the title compound, C8H6F4INO, in high yield. The structure is characterized by double layers of molecules linked by O—H⋯O and N—H⋯O hydrogen bonds, and linear C—I⋯F [I⋯F = 3.049 (2) Å] and bent C—I⋯I [I⋯I = 3.9388 (7) Å] interactions between pairs of nearly parallel iodotetrafluorophenyl groups. No O⋯I or N⋯I halogen bonding is found.
Related literature
For related literature, see: Metrangolo & Resnati (2001); Metrangolo et al. (2005, 2007).
Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 1999); cell SAINT (Bruker, 1999); data reduction: SAINT; program(s) used to solve structure: SIR2002 (Burla et al., 2003); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEP-3 (Farrugia, 1997) and Mercury (Macrae et al., 2006); software used to prepare material for publication: SHELXL97.
Supporting information
https://doi.org/10.1107/S1600536807064197/cf2167sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536807064197/cf2167Isup2.hkl
500 mg (8.2 mmol) of ethanolamine, 1.64 ml (12.3 mmol) of iodopentafluorobenzene and 1.24 g (9.03 mmol) of K2CO3 were stirred in 15 ml of refluxing THF. After 5 h, water was added and the aqueous phase was extracted three times with dichloromethane. The combined organic phases were washed with saturated aqueous Na2S2O3 solution and dried over Na2SO4. The residue was chromatographied on silica gel (240–400 mesh, δ 3.84 (2H, t, J = 5.2 Hz, CH2), 3.56 (2H, tt, J = 1.4 Hz, J = 5.2 Hz, CH2), 3.06 (2H, br s, OH and NH); 19 F NMR (470 MHz, CDCl3): δ -157.8 (2 F, m, CF—C), -124.3 (2 F, m, CF—CI)
dichloromethane) to give the product in 86% yield. 1H NMR (500 MHz, CDCl3):Exchanging the atomic assignments of N1 and O1 worsens the results of the least-squares
thus confirming that the tetrafluoroiodobenzene is bound to the amine group of ethanolamine. The H atoms were located in a difference map. For H of the hydroxyl group two possible positions were found. Both the positions (corresponding to H1O and H2O) are incompatible with a symmetry-equivalent position. In fact, the H1O···H1O(-x, y, 1/2 - z) distance is only 1.08 Å, and the H2O···H2O(-x, -y, 1 - z) distance is 1.24 Å. However, the distances H1O···H2O(-x, y, 1/2 - z) and H1O···H2O(-x, -y, 1 - z) are compatible with hydrogen bonding, being 2.17 and 2.32 Å, respectively. Any rotation of C—O—H around the C—O bond does not remedy the situation. The the hydroxyl group is thus disordered. H atoms were refined with the following restraints: all the C—H distances are approximately equal, O—H is 0.82 (1) Å, and N—H is freely refined.Supramolecular architectures assembled by halogen bonding (XB) are our long-standing interest (Metrangolo & Resnati, 2001; Metrangolo et al., 2005, 2007). As preliminary work, we need to design and to synthesize molecules showing functional and geometric properties adequate to give the supramolecular structures we wish to obtain. In the present study, we report the structure of 2-(2,3,5,6-tetrafluoro-4-iodo-phenylamino)ethanol, an intermediate in the synthesis of more complex molecules to be used in XB supramolecular engineering and in particular to cover gold surfaces with iodotetrafluorobenzene pendants. The molecular structure is shown in Figure 1. Containing alcohol and amino H atoms, the main interactions in this structure are O—H···O and N—H···O hydrogen bonds (HB) rather then O···I or N···I XB. In fact, we find the short distances O1···O1(-x,y,1/2 - z), O1···O1(-x,-y,1 - z) and N1···O1(x,-y,1/2 + z) of 2.715 (5), 2.781 (5), 3.046 (4) Å, respectively. These HBs generate one-dimensional sandwich ribbons; the distance between the centroids of a benzene ring and the mean plane through the nearest benzene ring in the sandwich is 3.393 Å. As shown in Figure 2 and 3, parallel one-dimensional ribbons are linked together by I1···I1(-x,1 - y,2 - z) and I1···F3(x,1 - y,1/2 + x) interactions, with length of 3.9388 (7) and 3.049 (2) Å, respectively, to form a two-dimensional sandwich layer. These are linked together only by residual forces; no distance below the sum of van der Waals radii is found between atoms in different sandwiches, as shown by the distance between the benzene centroid and the plane of the nearest benzene ring in a second two-dimensional layer, 0.074 Å larger than the intra-sandwich one (see Figure 4).
For related literature, see: Metrangolo & Resnati (2001); Metrangolo et al. (2005, 2007).
Data collection: SMART (Bruker, 1999); cell
SAINT (Bruker, 1999); data reduction: SAINT (Bruker, 1999); program(s) used to solve structure: SIR2002 (Burla et al., 2003); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEP-3 (Farrugia, 1997) and Mercury (Macrae et al., 2006); software used to prepare material for publication: SHELXL97 (Sheldrick, 1997).C8H6F4INO | F(000) = 1264 |
Mr = 335.04 | Dx = 2.294 Mg m−3 |
Monoclinic, C2/c | Melting point = 343–348 K |
Hall symbol: -C 2yc | Mo Kα radiation, λ = 0.71073 Å |
a = 13.327 (2) Å | Cell parameters from 2964 reflections |
b = 17.663 (3) Å | θ = 3.0–29.1° |
c = 8.3044 (14) Å | µ = 3.33 mm−1 |
β = 96.94 (2)° | T = 158 K |
V = 1940.5 (6) Å3 | Irregular table, colourless |
Z = 8 | 0.24 × 0.16 × 0.08 mm |
Bruker SMART CCD area-detector diffractometer | 2924 independent reflections |
Radiation source: fine-focus sealed tube | 2422 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.026 |
ω and φ scans | θmax = 31.3°, θmin = 1.9° |
Absorption correction: multi-scan (SADABS; Bruker, 1999) | h = −18→18 |
Tmin = 0.691, Tmax = 1.000 | k = −16→25 |
8054 measured reflections | l = −11→12 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.036 | Hydrogen site location: difference Fourier map |
wR(F2) = 0.092 | All H-atom parameters refined |
S = 1.04 | w = 1/[σ2(Fo2) + (0.0481P)2 + 2.2775P] where P = (Fo2 + 2Fc2)/3 |
2924 reflections | (Δ/σ)max = 0.001 |
162 parameters | Δρmax = 1.65 e Å−3 |
8 restraints | Δρmin = −0.47 e Å−3 |
C8H6F4INO | V = 1940.5 (6) Å3 |
Mr = 335.04 | Z = 8 |
Monoclinic, C2/c | Mo Kα radiation |
a = 13.327 (2) Å | µ = 3.33 mm−1 |
b = 17.663 (3) Å | T = 158 K |
c = 8.3044 (14) Å | 0.24 × 0.16 × 0.08 mm |
β = 96.94 (2)° |
Bruker SMART CCD area-detector diffractometer | 2924 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 1999) | 2422 reflections with I > 2σ(I) |
Tmin = 0.691, Tmax = 1.000 | Rint = 0.026 |
8054 measured reflections |
R[F2 > 2σ(F2)] = 0.036 | 8 restraints |
wR(F2) = 0.092 | All H-atom parameters refined |
S = 1.04 | Δρmax = 1.65 e Å−3 |
2924 reflections | Δρmin = −0.47 e Å−3 |
162 parameters |
Experimental. Data collection using an OXFORD low temperature device. Below 158 K the structure possibly shows a phase transition. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
I1 | 0.116120 (18) | 0.431723 (13) | 1.05305 (3) | 0.03962 (10) | |
F1 | 0.11489 (13) | 0.12833 (11) | 1.03239 (18) | 0.0310 (4) | |
F2 | 0.10979 (15) | 0.26089 (11) | 1.1821 (2) | 0.0341 (4) | |
F3 | 0.13483 (15) | 0.38552 (11) | 0.6853 (2) | 0.0375 (4) | |
F4 | 0.13603 (14) | 0.25397 (11) | 0.53509 (19) | 0.0320 (4) | |
N1 | 0.12288 (19) | 0.11508 (15) | 0.7067 (3) | 0.0256 (5) | |
H1N | 0.120 (3) | 0.080 (2) | 0.779 (5) | 0.032 (10)* | |
O1 | 0.06410 (19) | 0.02423 (13) | 0.3901 (2) | 0.0322 (5) | |
H1O | 0.026 (5) | 0.027 (5) | 0.306 (6) | 0.048* | 0.50 |
H2O | 0.022 (5) | 0.020 (5) | 0.454 (8) | 0.048* | 0.50 |
C1 | 0.12620 (19) | 0.18530 (16) | 0.7785 (3) | 0.0211 (5) | |
C2 | 0.1188 (2) | 0.19221 (15) | 0.9451 (3) | 0.0220 (5) | |
C3 | 0.11614 (19) | 0.26044 (18) | 1.0212 (3) | 0.0239 (5) | |
C4 | 0.1225 (2) | 0.32801 (16) | 0.9396 (4) | 0.0257 (5) | |
C5 | 0.1307 (2) | 0.32223 (17) | 0.7744 (4) | 0.0266 (6) | |
C6 | 0.13237 (19) | 0.25369 (15) | 0.6968 (3) | 0.0235 (5) | |
C7 | 0.1830 (2) | 0.0964 (2) | 0.5749 (3) | 0.0300 (6) | |
H7A | 0.216 (3) | 0.0485 (14) | 0.602 (4) | 0.031 (9)* | |
H7B | 0.237 (2) | 0.1319 (17) | 0.573 (4) | 0.032 (9)* | |
C8 | 0.1226 (3) | 0.0915 (2) | 0.4085 (3) | 0.0303 (6) | |
H8A | 0.079 (3) | 0.136 (2) | 0.388 (6) | 0.072 (15)* | |
H8B | 0.161 (2) | 0.090 (2) | 0.319 (3) | 0.029 (9)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
I1 | 0.04639 (16) | 0.02605 (13) | 0.04478 (15) | 0.00436 (8) | −0.00122 (10) | −0.00885 (8) |
F1 | 0.0507 (11) | 0.0251 (9) | 0.0177 (7) | −0.0040 (7) | 0.0061 (7) | 0.0048 (6) |
F2 | 0.0505 (10) | 0.0345 (10) | 0.0177 (7) | 0.0006 (8) | 0.0052 (7) | −0.0053 (7) |
F3 | 0.0486 (11) | 0.0235 (9) | 0.0403 (10) | −0.0035 (8) | 0.0052 (8) | 0.0108 (8) |
F4 | 0.0446 (10) | 0.0336 (10) | 0.0190 (8) | −0.0037 (8) | 0.0089 (7) | 0.0048 (7) |
N1 | 0.0371 (13) | 0.0243 (12) | 0.0161 (10) | −0.0009 (10) | 0.0068 (9) | 0.0017 (9) |
O1 | 0.0516 (14) | 0.0244 (10) | 0.0190 (9) | 0.0051 (10) | −0.0024 (9) | −0.0019 (8) |
C1 | 0.0215 (11) | 0.0249 (13) | 0.0171 (11) | 0.0001 (10) | 0.0032 (9) | 0.0004 (9) |
C2 | 0.0263 (12) | 0.0208 (12) | 0.0192 (11) | −0.0011 (10) | 0.0040 (9) | 0.0039 (9) |
C3 | 0.0248 (13) | 0.0273 (14) | 0.0195 (12) | −0.0018 (10) | 0.0021 (10) | −0.0017 (10) |
C4 | 0.0229 (12) | 0.0215 (13) | 0.0325 (14) | 0.0001 (10) | 0.0021 (10) | −0.0011 (11) |
C5 | 0.0243 (12) | 0.0253 (13) | 0.0297 (14) | −0.0023 (11) | 0.0020 (10) | 0.0084 (11) |
C6 | 0.0240 (12) | 0.0275 (14) | 0.0194 (12) | −0.0035 (11) | 0.0045 (10) | 0.0030 (10) |
C7 | 0.0345 (15) | 0.0359 (16) | 0.0204 (12) | 0.0057 (13) | 0.0061 (11) | −0.0026 (11) |
C8 | 0.0408 (16) | 0.0331 (15) | 0.0172 (12) | 0.0021 (13) | 0.0049 (11) | 0.0016 (11) |
I1—C4 | 2.067 (3) | C1—C6 | 1.393 (4) |
F1—C2 | 1.345 (3) | C1—C2 | 1.404 (4) |
F2—C3 | 1.349 (3) | C2—C3 | 1.363 (4) |
F3—C5 | 1.346 (3) | C3—C4 | 1.380 (4) |
F4—C6 | 1.350 (3) | C4—C5 | 1.392 (4) |
N1—C1 | 1.375 (4) | C5—C6 | 1.373 (4) |
N1—C7 | 1.470 (4) | C7—C8 | 1.516 (4) |
N1—H1N | 0.87 (4) | C7—H7A | 0.97 (2) |
O1—C8 | 1.419 (4) | C7—H7B | 0.96 (2) |
O1—H1O | 0.818 (10) | C8—H8A | 0.97 (2) |
O1—H2O | 0.818 (10) | C8—H8B | 0.96 (2) |
C1—N1—C7 | 122.3 (2) | F3—C5—C6 | 118.0 (3) |
C1—N1—H1N | 110 (3) | F3—C5—C4 | 119.6 (3) |
C7—N1—H1N | 115 (3) | C6—C5—C4 | 122.3 (3) |
C8—O1—H1O | 108 (6) | F4—C6—C5 | 117.9 (2) |
C8—O1—H2O | 115 (6) | F4—C6—C1 | 120.0 (2) |
H1O—O1—H2O | 99 (8) | C5—C6—C1 | 122.0 (2) |
N1—C1—C6 | 124.9 (2) | N1—C7—C8 | 114.5 (3) |
N1—C1—C2 | 120.3 (2) | N1—C7—H7A | 107 (2) |
C6—C1—C2 | 114.8 (2) | C8—C7—H7A | 110 (2) |
F1—C2—C3 | 119.1 (2) | N1—C7—H7B | 110 (2) |
F1—C2—C1 | 118.0 (2) | C8—C7—H7B | 110 (2) |
C3—C2—C1 | 122.9 (3) | H7A—C7—H7B | 105 (3) |
F2—C3—C2 | 118.2 (3) | O1—C8—C7 | 111.7 (3) |
F2—C3—C4 | 119.8 (3) | O1—C8—H8A | 110 (3) |
C2—C3—C4 | 122.0 (3) | C7—C8—H8A | 110 (3) |
C3—C4—C5 | 115.9 (3) | O1—C8—H8B | 104 (2) |
C3—C4—I1 | 122.3 (2) | C7—C8—H8B | 116 (2) |
C5—C4—I1 | 121.8 (2) | H8A—C8—H8B | 105 (4) |
C7—N1—C1—C6 | 38.5 (4) | C3—C4—C5—F3 | 178.5 (2) |
C7—N1—C1—C2 | −144.3 (3) | I1—C4—C5—F3 | 0.1 (4) |
N1—C1—C2—F1 | 4.1 (4) | C3—C4—C5—C6 | 0.0 (4) |
C6—C1—C2—F1 | −178.5 (2) | I1—C4—C5—C6 | −178.3 (2) |
N1—C1—C2—C3 | −176.3 (3) | F3—C5—C6—F4 | −1.3 (4) |
C6—C1—C2—C3 | 1.1 (4) | C4—C5—C6—F4 | 177.1 (2) |
F1—C2—C3—F2 | 0.1 (4) | F3—C5—C6—C1 | −178.6 (2) |
C1—C2—C3—F2 | −179.5 (2) | C4—C5—C6—C1 | −0.1 (4) |
F1—C2—C3—C4 | 178.3 (2) | N1—C1—C6—F4 | −0.3 (4) |
C1—C2—C3—C4 | −1.3 (4) | C2—C1—C6—F4 | −177.6 (2) |
F2—C3—C4—C5 | 178.8 (2) | N1—C1—C6—C5 | 176.9 (3) |
C2—C3—C4—C5 | 0.7 (4) | C2—C1—C6—C5 | −0.4 (4) |
F2—C3—C4—I1 | −2.8 (4) | C1—N1—C7—C8 | −106.0 (3) |
C2—C3—C4—I1 | 179.0 (2) | N1—C7—C8—O1 | −74.4 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N···O1i | 0.87 (2) | 2.23 (3) | 3.046 (3) | 157 (3) |
O1—H1O···O1ii | 0.82 (5) | 1.90 (7) | 2.715 (4) | 175 (8) |
O1—H2O···O1iii | 0.82 (5) | 1.99 (5) | 2.781 (4) | 162 (8) |
Symmetry codes: (i) x, −y, z−1/2; (ii) −x, y, −z+1/2; (iii) −x, −y, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C8H6F4INO |
Mr | 335.04 |
Crystal system, space group | Monoclinic, C2/c |
Temperature (K) | 158 |
a, b, c (Å) | 13.327 (2), 17.663 (3), 8.3044 (14) |
β (°) | 96.94 (2) |
V (Å3) | 1940.5 (6) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 3.33 |
Crystal size (mm) | 0.24 × 0.16 × 0.08 |
Data collection | |
Diffractometer | Bruker SMART CCD area-detector |
Absorption correction | Multi-scan (SADABS; Bruker, 1999) |
Tmin, Tmax | 0.691, 1.000 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 8054, 2924, 2422 |
Rint | 0.026 |
(sin θ/λ)max (Å−1) | 0.731 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.036, 0.092, 1.04 |
No. of reflections | 2924 |
No. of parameters | 162 |
No. of restraints | 8 |
H-atom treatment | All H-atom parameters refined |
Δρmax, Δρmin (e Å−3) | 1.65, −0.47 |
Computer programs: SMART (Bruker, 1999), SAINT (Bruker, 1999), SIR2002 (Burla et al., 2003), SHELXL97 (Sheldrick, 1997), ORTEP-3 (Farrugia, 1997) and Mercury (Macrae et al., 2006).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N···O1i | 0.87 (2) | 2.23 (3) | 3.046 (3) | 157 (3) |
O1—H1O···O1ii | 0.82 (5) | 1.90 (7) | 2.715 (4) | 175 (8) |
O1—H2O···O1iii | 0.82 (5) | 1.99 (5) | 2.781 (4) | 162 (8) |
Symmetry codes: (i) x, −y, z−1/2; (ii) −x, y, −z+1/2; (iii) −x, −y, −z+1. |
References
Bruker (1999). SADABS, SMART and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Burla, M. C., Camalli, M., Carrozzini, B., Cascarano, G. L., Giacovazzo, C., Polidori, G. & Spagna, R. (2003). J. Appl. Cryst. 36, 1103. CrossRef IUCr Journals Google Scholar
Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565. CrossRef IUCr Journals Google Scholar
Macrae, C. F., Edgington, P. R., McCabe, P., Pidcock, E., Shields, G. P., Taylor, R., Towler, M. & van de Streek, J. (2006). J. Appl. Cryst. 39, 453–457. Web of Science CSD CrossRef CAS IUCr Journals Google Scholar
Metrangolo, P., Neukirch, H., Pilati, T. & Resnati, G. (2005). Acc. Chem. Res. 38, 386–395. Web of Science CrossRef PubMed CAS Google Scholar
Metrangolo, P. & Resnati, G. (2001). Chem. Eur. J. 7, 2511–2519. CrossRef PubMed CAS Google Scholar
Metrangolo, P., Resnati, G., Pilati, T., Liantonio, R. & Meyer, F. (2007). J. Polym. Sci. Part. A, 45, 1–15. Web of Science CrossRef CAS Google Scholar
Sheldrick, G. M. (1997). SHELXL97. University of Göttingen, Germany. Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Supramolecular architectures assembled by halogen bonding (XB) are our long-standing interest (Metrangolo & Resnati, 2001; Metrangolo et al., 2005, 2007). As preliminary work, we need to design and to synthesize molecules showing functional and geometric properties adequate to give the supramolecular structures we wish to obtain. In the present study, we report the structure of 2-(2,3,5,6-tetrafluoro-4-iodo-phenylamino)ethanol, an intermediate in the synthesis of more complex molecules to be used in XB supramolecular engineering and in particular to cover gold surfaces with iodotetrafluorobenzene pendants. The molecular structure is shown in Figure 1. Containing alcohol and amino H atoms, the main interactions in this structure are O—H···O and N—H···O hydrogen bonds (HB) rather then O···I or N···I XB. In fact, we find the short distances O1···O1(-x,y,1/2 - z), O1···O1(-x,-y,1 - z) and N1···O1(x,-y,1/2 + z) of 2.715 (5), 2.781 (5), 3.046 (4) Å, respectively. These HBs generate one-dimensional sandwich ribbons; the distance between the centroids of a benzene ring and the mean plane through the nearest benzene ring in the sandwich is 3.393 Å. As shown in Figure 2 and 3, parallel one-dimensional ribbons are linked together by I1···I1(-x,1 - y,2 - z) and I1···F3(x,1 - y,1/2 + x) interactions, with length of 3.9388 (7) and 3.049 (2) Å, respectively, to form a two-dimensional sandwich layer. These are linked together only by residual forces; no distance below the sum of van der Waals radii is found between atoms in different sandwiches, as shown by the distance between the benzene centroid and the plane of the nearest benzene ring in a second two-dimensional layer, 0.074 Å larger than the intra-sandwich one (see Figure 4).