organic compounds
7-(Hydroxymethyl)-2-(1-hydroxy-1-methylethyl)-4-methoxy-2,3-dihydro-5H-furo[3,2-g]chromen-5-one methanol hemisolvate
aChemical Engineering and Pharmaceutics College, Henan University of Science and Technology, Luoyang 471003, People's Republic of China
*Correspondence e-mail: liudeng20022002@yahoo.com.cn
The title compound (cimifugin), C16H18O6·0.5CH3OH, was isolated from the rhizome of Actaea asiatica Hara. The contains two independent molecules and a solvent methanol molecule. The five-numbered ring adopts an in each molecule. Intra- and intermolecular O—H⋯O hydrogen bonds stabilize the crystal structure.
Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 1997); cell SAINT (Bruker, 1997); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: SHELXTL (Bruker, 1997); software used to prepare material for publication: SHELXTL.
Supporting information
https://doi.org/10.1107/S1600536807063763/gg2062sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536807063763/gg2062Isup2.hkl
The rhizomes of Phlomis umbrosa turcz was collected in Jianshi county, Hubei province, China, January 2006. The plants were identified as Actaea asiatica Hara by Professor Ding-rong Wan, College of Life Science, South-Central University for Nationalities. A voucher specimen (No. D20050115) was deposited in the laboratory of Natural products, Tinjing Medical University. The rhizomes of Actaea asiatica Hara was dried at room temperature in the dark. The material (4.3 kg) was extracted three times with 95% ethanol under reflux. The 95% ethanol extract (500 g) was suspended in water, and then extracted with petroleum ether, ethyl acetate and n-butanol successively. The ethyl acetate layer (80 g) was absorbed on to silica gel (150 g) and chromatographed on a silica gel (1000 g) column eluted with petroleum ether–EtOAc with the increased polarity to give 25 fractions. Fraction 8 was further separated on Toyopear HW-40, pre. HPLC-ODS to afford 200 mg of cimifugin. 13C NMR (300 MHz, CD3OD, p.p.m.): 92.7, 28.8, 118.4, 167.1, 112.3, 179.7, 109.3, 168.7, 157.0, 94.5, 161.1, 72.3, 25.4, 25.5, 61.0, 61.2. Crystals suitable for X-ray structure analysis were obtained by slow evaporation from methanol at room temperature.
H atoms of the hydroxy group were located in a difference density map and the atomic coordinates allowed to refine freely. Other H atoms were positioned geometrically and refined as riding with C—H = 0.95–0.98 Å). For the CH and CH2 groups, Uiso(H) values are set equal to 1.2Ueq(carrier atom) and for the methyl groups they are set equal to 1.5Ueq(carrier atom). The
could not be established because of the absence of significant anomalous effects. Friedel pairs were merged for the final cycles of refinement.Actaea asiatica Hara (Ranunculaceae) is widely distributed in the southwest and northwest of the People's Republic of China. As a Chinesa folk medicine, its rhizome is used to treat headache, sore throat, measles, pertussis, prolapse of uterus (Wan, 1990). Previous phytochemical investigations have reported in the isolation of cimiaceroside A and 26-deoxycimicifugoside from this plant (Kusano et al., 1998, 1999). To investigate the bioactive natural products from A. asiatica, chemical studies of the rhizome of the plant were undertaken by screening using immunopotent tests in vitro, we obtained a compund, viz. cimifugin, from the petroleum ether extract. The structure of cimifugin was elucidated by extensive spectroscopic analysis, including two-dimensional NMR spectroscopy, and established unequivocally by single-crystal X-ray diffraction analysis.
The molecular structure of (I) and the atom-numbering scheme are shown in Fig. 1. The
of (I) contains two independent molecules and a methanol of solvation. The molecule is composed of a fused five-numbered ring and two fused six-numbered viz. A(C1–C3/C11/O2), B(C3–C5/C9–C11) and C(C5–C9/O4). In the two molecules, two fused six-numbered (B and C) are almost planar with the r.m.s. deviations of 0.0129 (4) and 1.0103 (4) Å, respectively, while ring C does not deviate form the chromone plane. The O5—C6—C5 and C7—C6—C5 angles are 123.3 (4)° and 115.8 (3)°, respectively, which indicates that carbonyl C6 atom slightly deviates from the ideal value of 120°. The similar deviation is also observed for the C22 with the angles of O11—C22—C21 [124.4 (3)°] and C23—C22—C21 [115.2 (3)°].The hydroxy groups are attached at atoms C12, C16, C28 and C32. The methoxy group located at atoms C4 and C20. The interactions of intermolecular and intramolecular hydrogen bonds are formed between the hydroxy and carbonyl groups, which stablize the crystal structure.
For related literature, see: Kusano et al. (1998, 1999); Wan (1990).
Data collection: SMART (Bruker, 1997); cell
SMART (Bruker, 1997); data reduction: SAINT (Bruker, 1997); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: SHELXTL (Bruker, 1997); software used to prepare material for publication: SHELXTL (Bruker, 1997).Fig. 1. View of the molecule of (I) showing the atom-labelling scheme. Displacement ellipsoids are drawn at the 30% probability level. Hydrogen atoms have been omitted for clarity. |
C16H18O6·0.5CH4O | F(000) = 684 |
Mr = 322.33 | Dx = 1.337 Mg m−3 |
Monoclinic, P21 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2yb | Cell parameters from 3898 reflections |
a = 9.4092 (14) Å | θ = 2.6–25.4° |
b = 13.4176 (19) Å | µ = 0.10 mm−1 |
c = 12.6903 (18) Å | T = 294 K |
β = 91.600 (2)° | Plate, colourless |
V = 1601.5 (4) Å3 | 0.30 × 0.28 × 0.24 mm |
Z = 4 |
Bruker SMART CCD area-detector diffractometer | 3408 independent reflections |
Radiation source: fine-focus sealed tube | 2556 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.027 |
φ and ω scans | θmax = 26.4°, θmin = 1.6° |
Absorption correction: multi-scan (SADABS; Bruker, 1997) | h = −11→11 |
Tmin = 0.956, Tmax = 0.976 | k = −16→9 |
9210 measured reflections | l = −15→15 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.039 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.108 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | w = 1/[σ2(Fo2) + (0.0592P)2 + 0.2147P] where P = (Fo2 + 2Fc2)/3 |
3408 reflections | (Δ/σ)max = 0.003 |
437 parameters | Δρmax = 0.17 e Å−3 |
12 restraints | Δρmin = −0.21 e Å−3 |
C16H18O6·0.5CH4O | V = 1601.5 (4) Å3 |
Mr = 322.33 | Z = 4 |
Monoclinic, P21 | Mo Kα radiation |
a = 9.4092 (14) Å | µ = 0.10 mm−1 |
b = 13.4176 (19) Å | T = 294 K |
c = 12.6903 (18) Å | 0.30 × 0.28 × 0.24 mm |
β = 91.600 (2)° |
Bruker SMART CCD area-detector diffractometer | 3408 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 1997) | 2556 reflections with I > 2σ(I) |
Tmin = 0.956, Tmax = 0.976 | Rint = 0.027 |
9210 measured reflections |
R[F2 > 2σ(F2)] = 0.039 | 12 restraints |
wR(F2) = 0.108 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | Δρmax = 0.17 e Å−3 |
3408 reflections | Δρmin = −0.21 e Å−3 |
437 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.8781 (3) | 0.6603 (2) | 0.4785 (2) | 0.0674 (7) | |
H1 | 0.820 (5) | 0.621 (3) | 0.508 (4) | 0.101* | |
O2 | 0.9188 (3) | 0.65092 (18) | 0.70280 (17) | 0.0545 (6) | |
O3 | 0.7862 (3) | 0.97796 (18) | 0.7545 (2) | 0.0663 (7) | |
O4 | 0.6245 (3) | 0.71772 (16) | 0.98859 (17) | 0.0499 (6) | |
O5 | 0.6128 (4) | 1.0136 (2) | 0.9273 (3) | 0.1017 (12) | |
O6 | 0.4013 (3) | 0.7906 (2) | 1.1992 (2) | 0.0779 (9) | |
H6 | 0.475 (4) | 0.799 (5) | 1.239 (4) | 0.117* | |
O7 | 0.1990 (3) | 0.9270 (2) | 1.1264 (2) | 0.0634 (7) | |
H7 | 0.254 (5) | 0.878 (3) | 1.147 (4) | 0.095* | |
O8 | 0.1715 (3) | 0.7605 (2) | 0.98115 (17) | 0.0566 (6) | |
O9 | 0.3011 (3) | 0.93880 (18) | 0.67958 (17) | 0.0550 (6) | |
O10 | 0.4679 (2) | 0.60625 (15) | 0.73882 (16) | 0.0445 (5) | |
O11 | 0.4630 (3) | 0.84518 (19) | 0.54207 (17) | 0.0570 (6) | |
O12 | 0.6907 (3) | 0.5091 (2) | 0.53907 (19) | 0.0619 (7) | |
H12 | 0.642 (5) | 0.467 (3) | 0.502 (3) | 0.093* | |
C1 | 1.0036 (4) | 0.7143 (3) | 0.6349 (3) | 0.0518 (8) | |
H1A | 1.0994 | 0.7200 | 0.6668 | 0.062* | |
C2 | 0.9341 (4) | 0.8170 (3) | 0.6371 (3) | 0.0553 (9) | |
H2A | 1.0047 | 0.8694 | 0.6435 | 0.066* | |
H2B | 0.8752 | 0.8284 | 0.5743 | 0.066* | |
C3 | 0.8461 (4) | 0.8111 (3) | 0.7335 (3) | 0.0463 (8) | |
C4 | 0.7736 (4) | 0.8812 (2) | 0.7866 (3) | 0.0468 (8) | |
C5 | 0.6943 (3) | 0.8538 (2) | 0.8758 (3) | 0.0445 (7) | |
C6 | 0.6171 (4) | 0.9232 (3) | 0.9427 (3) | 0.0554 (9) | |
C7 | 0.5464 (4) | 0.8794 (3) | 1.0296 (3) | 0.0541 (9) | |
H7A | 0.4959 | 0.9204 | 1.0743 | 0.065* | |
C8 | 0.5506 (4) | 0.7821 (3) | 1.0485 (3) | 0.0505 (8) | |
C9 | 0.6955 (3) | 0.7524 (2) | 0.9032 (2) | 0.0430 (7) | |
C10 | 0.7682 (4) | 0.6792 (2) | 0.8496 (3) | 0.0460 (8) | |
H10 | 0.7662 | 0.6126 | 0.8696 | 0.055* | |
C11 | 0.8426 (4) | 0.7116 (2) | 0.7658 (2) | 0.0447 (8) | |
C12 | 1.0158 (4) | 0.6656 (3) | 0.5284 (3) | 0.0581 (9) | |
C13 | 1.0790 (6) | 0.5624 (4) | 0.5394 (4) | 0.0854 (14) | |
H13A | 1.0147 | 0.5203 | 0.5765 | 0.128* | |
H13B | 1.1680 | 0.5662 | 0.5781 | 0.128* | |
H13C | 1.0943 | 0.5351 | 0.4707 | 0.128* | |
C14 | 1.1047 (5) | 0.7311 (4) | 0.4586 (3) | 0.0798 (13) | |
H14A | 1.1128 | 0.7003 | 0.3908 | 0.120* | |
H14B | 1.1976 | 0.7395 | 0.4904 | 0.120* | |
H14C | 1.0598 | 0.7950 | 0.4504 | 0.120* | |
C15 | 0.6701 (5) | 1.0182 (4) | 0.6989 (4) | 0.0815 (13) | |
H15A | 0.6673 | 0.9923 | 0.6284 | 0.122* | |
H15B | 0.6789 | 1.0894 | 0.6967 | 0.122* | |
H15C | 0.5841 | 1.0005 | 0.7333 | 0.122* | |
C16 | 0.4762 (5) | 0.7266 (3) | 1.1319 (3) | 0.0698 (11) | |
H16A | 0.4100 | 0.6798 | 1.0990 | 0.084* | |
H16B | 0.5453 | 0.6886 | 1.1734 | 0.084* | |
C17 | 0.0789 (4) | 0.8478 (3) | 0.9780 (3) | 0.0529 (8) | |
H17 | −0.0156 | 0.8272 | 0.9518 | 0.063* | |
C18 | 0.1425 (4) | 0.9172 (3) | 0.8981 (3) | 0.0535 (9) | |
H18A | 0.0691 | 0.9476 | 0.8536 | 0.064* | |
H18B | 0.1984 | 0.9692 | 0.9325 | 0.064* | |
C19 | 0.2351 (3) | 0.8488 (2) | 0.8353 (2) | 0.0414 (7) | |
C20 | 0.3053 (3) | 0.8572 (2) | 0.7426 (2) | 0.0409 (7) | |
C21 | 0.3860 (3) | 0.7750 (2) | 0.7045 (2) | 0.0373 (6) | |
C22 | 0.4621 (3) | 0.7746 (3) | 0.6053 (2) | 0.0420 (7) | |
C23 | 0.5373 (4) | 0.6851 (3) | 0.5837 (2) | 0.0459 (8) | |
H23 | 0.5869 | 0.6813 | 0.5214 | 0.055* | |
C24 | 0.5404 (3) | 0.6068 (2) | 0.6479 (2) | 0.0425 (7) | |
C25 | 0.3925 (3) | 0.6894 (2) | 0.7668 (2) | 0.0388 (7) | |
C26 | 0.3224 (4) | 0.6792 (3) | 0.8611 (2) | 0.0453 (8) | |
H26 | 0.3272 | 0.6212 | 0.9010 | 0.054* | |
C27 | 0.2462 (3) | 0.7599 (3) | 0.8910 (2) | 0.0452 (8) | |
C28 | 0.0656 (4) | 0.8878 (3) | 1.0900 (3) | 0.0597 (10) | |
C29 | −0.0371 (4) | 0.9744 (4) | 1.0879 (4) | 0.0836 (15) | |
H29A | −0.0374 | 1.0053 | 1.1561 | 0.125* | |
H29B | −0.1309 | 0.9508 | 1.0697 | 0.125* | |
H29C | −0.0083 | 1.0223 | 1.0364 | 0.125* | |
C30 | 0.0158 (6) | 0.8050 (4) | 1.1621 (3) | 0.0948 (17) | |
H30A | 0.0848 | 0.7523 | 1.1640 | 0.142* | |
H30B | −0.0738 | 0.7795 | 1.1358 | 0.142* | |
H30C | 0.0048 | 0.8309 | 1.2319 | 0.142* | |
C31 | 0.2736 (5) | 1.0340 (3) | 0.7232 (3) | 0.0749 (12) | |
H31A | 0.1729 | 1.0429 | 0.7292 | 0.112* | |
H31B | 0.3105 | 1.0848 | 0.6782 | 0.112* | |
H31C | 0.3188 | 1.0388 | 0.7918 | 0.112* | |
C32 | 0.6206 (4) | 0.5121 (3) | 0.6356 (3) | 0.0550 (9) | |
H32A | 0.6900 | 0.5056 | 0.6932 | 0.066* | |
H32B | 0.5554 | 0.4563 | 0.6392 | 0.066* | |
O13 | 0.5854 (4) | 0.7999 (3) | 0.3575 (2) | 0.0998 (12) | |
H13 | 0.569 (7) | 0.802 (6) | 0.432 (2) | 0.150* | |
C33 | 0.7073 (6) | 0.8399 (6) | 0.3440 (5) | 0.125 (2) | |
H33A | 0.7379 | 0.8737 | 0.4073 | 0.187* | |
H33B | 0.7004 | 0.8868 | 0.2870 | 0.187* | |
H33C | 0.7750 | 0.7891 | 0.3274 | 0.187* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0728 (18) | 0.077 (2) | 0.0523 (14) | −0.0222 (15) | −0.0001 (12) | −0.0111 (13) |
O2 | 0.0746 (16) | 0.0410 (13) | 0.0481 (12) | 0.0016 (12) | 0.0068 (11) | −0.0057 (11) |
O3 | 0.0728 (17) | 0.0358 (13) | 0.0905 (19) | −0.0054 (13) | 0.0057 (14) | 0.0072 (13) |
O4 | 0.0659 (15) | 0.0334 (11) | 0.0506 (12) | 0.0051 (11) | 0.0029 (11) | −0.0036 (10) |
O5 | 0.178 (4) | 0.0319 (15) | 0.098 (2) | 0.0235 (19) | 0.049 (2) | 0.0063 (15) |
O6 | 0.105 (2) | 0.0615 (19) | 0.0684 (18) | 0.0135 (18) | 0.0215 (16) | −0.0086 (15) |
O7 | 0.0598 (16) | 0.0650 (17) | 0.0650 (15) | 0.0035 (13) | −0.0056 (12) | −0.0216 (13) |
O8 | 0.0731 (15) | 0.0553 (14) | 0.0425 (12) | −0.0063 (13) | 0.0191 (11) | −0.0037 (11) |
O9 | 0.0782 (16) | 0.0441 (13) | 0.0431 (12) | 0.0104 (12) | 0.0091 (11) | 0.0063 (10) |
O10 | 0.0612 (14) | 0.0357 (12) | 0.0371 (11) | −0.0021 (10) | 0.0088 (10) | −0.0013 (9) |
O11 | 0.0722 (16) | 0.0570 (15) | 0.0426 (12) | 0.0135 (13) | 0.0156 (11) | 0.0146 (11) |
O12 | 0.0786 (18) | 0.0524 (15) | 0.0559 (15) | −0.0120 (13) | 0.0216 (12) | −0.0181 (12) |
C1 | 0.053 (2) | 0.049 (2) | 0.0533 (19) | −0.0027 (16) | −0.0018 (16) | −0.0045 (16) |
C2 | 0.064 (2) | 0.048 (2) | 0.054 (2) | −0.0061 (18) | 0.0000 (17) | −0.0041 (16) |
C3 | 0.0536 (19) | 0.0385 (17) | 0.0464 (17) | −0.0031 (15) | −0.0063 (15) | −0.0035 (14) |
C4 | 0.0505 (18) | 0.0314 (17) | 0.0579 (19) | −0.0038 (14) | −0.0081 (16) | −0.0023 (14) |
C5 | 0.0491 (18) | 0.0315 (16) | 0.0524 (18) | 0.0021 (14) | −0.0073 (15) | −0.0053 (14) |
C6 | 0.074 (2) | 0.0324 (19) | 0.059 (2) | 0.0060 (17) | −0.0028 (18) | −0.0057 (16) |
C7 | 0.065 (2) | 0.0394 (19) | 0.058 (2) | 0.0078 (16) | 0.0020 (17) | −0.0101 (16) |
C8 | 0.063 (2) | 0.0402 (19) | 0.0480 (17) | 0.0059 (16) | −0.0013 (16) | −0.0070 (15) |
C9 | 0.0505 (18) | 0.0342 (17) | 0.0438 (16) | −0.0018 (14) | −0.0078 (14) | −0.0030 (14) |
C10 | 0.060 (2) | 0.0303 (15) | 0.0475 (17) | 0.0044 (15) | −0.0068 (15) | −0.0023 (14) |
C11 | 0.055 (2) | 0.0351 (16) | 0.0434 (17) | 0.0049 (15) | −0.0076 (14) | −0.0068 (14) |
C12 | 0.058 (2) | 0.060 (2) | 0.057 (2) | −0.0059 (19) | 0.0067 (17) | −0.0110 (18) |
C13 | 0.103 (4) | 0.069 (3) | 0.085 (3) | 0.012 (3) | 0.021 (3) | −0.018 (3) |
C14 | 0.071 (3) | 0.095 (4) | 0.073 (3) | −0.013 (3) | 0.016 (2) | −0.009 (3) |
C15 | 0.087 (3) | 0.061 (3) | 0.097 (3) | 0.012 (2) | 0.018 (3) | 0.025 (2) |
C16 | 0.108 (3) | 0.048 (2) | 0.054 (2) | 0.007 (2) | 0.016 (2) | −0.0045 (18) |
C17 | 0.0483 (19) | 0.060 (2) | 0.0508 (18) | −0.0060 (17) | 0.0090 (15) | −0.0129 (17) |
C18 | 0.058 (2) | 0.051 (2) | 0.0510 (19) | 0.0027 (17) | 0.0047 (16) | −0.0082 (16) |
C19 | 0.0442 (17) | 0.0448 (18) | 0.0354 (15) | −0.0032 (14) | 0.0028 (13) | −0.0050 (14) |
C20 | 0.0435 (17) | 0.0416 (17) | 0.0372 (15) | −0.0011 (14) | −0.0026 (13) | −0.0022 (13) |
C21 | 0.0388 (15) | 0.0413 (17) | 0.0317 (13) | −0.0056 (13) | −0.0012 (11) | −0.0013 (13) |
C22 | 0.0420 (17) | 0.0484 (19) | 0.0354 (15) | −0.0031 (15) | 0.0013 (13) | 0.0025 (14) |
C23 | 0.0535 (19) | 0.0487 (19) | 0.0360 (15) | −0.0007 (16) | 0.0089 (14) | −0.0018 (14) |
C24 | 0.0480 (18) | 0.0421 (17) | 0.0375 (16) | −0.0053 (15) | 0.0034 (13) | −0.0057 (14) |
C25 | 0.0430 (17) | 0.0380 (17) | 0.0354 (15) | −0.0053 (14) | 0.0010 (13) | −0.0059 (13) |
C26 | 0.060 (2) | 0.0402 (17) | 0.0364 (15) | −0.0103 (16) | 0.0064 (14) | −0.0016 (13) |
C27 | 0.0515 (19) | 0.0509 (19) | 0.0335 (15) | −0.0111 (16) | 0.0074 (13) | −0.0092 (15) |
C28 | 0.054 (2) | 0.077 (3) | 0.0486 (18) | −0.0041 (19) | 0.0108 (16) | −0.0169 (19) |
C29 | 0.065 (2) | 0.108 (4) | 0.078 (3) | 0.016 (3) | 0.008 (2) | −0.040 (3) |
C30 | 0.110 (4) | 0.120 (5) | 0.056 (2) | −0.026 (3) | 0.033 (2) | −0.009 (3) |
C31 | 0.117 (4) | 0.049 (2) | 0.059 (2) | 0.004 (2) | 0.006 (2) | 0.0002 (19) |
C32 | 0.078 (2) | 0.0362 (17) | 0.0510 (19) | −0.0038 (17) | 0.0131 (17) | −0.0068 (15) |
O13 | 0.126 (3) | 0.113 (3) | 0.0614 (18) | 0.022 (2) | 0.0245 (19) | 0.0038 (19) |
C33 | 0.081 (3) | 0.163 (6) | 0.130 (4) | 0.015 (4) | −0.012 (3) | 0.014 (5) |
O1—C12 | 1.428 (5) | C14—H14A | 0.9600 |
O1—H1 | 0.85 (3) | C14—H14B | 0.9600 |
O2—C11 | 1.359 (4) | C14—H14C | 0.9600 |
O2—C1 | 1.464 (4) | C15—H15A | 0.9600 |
O3—C4 | 1.367 (4) | C15—H15B | 0.9600 |
O3—C15 | 1.393 (5) | C15—H15C | 0.9600 |
O4—C8 | 1.356 (4) | C16—H16A | 0.9700 |
O4—C9 | 1.370 (4) | C16—H16B | 0.9700 |
O5—C6 | 1.229 (4) | C17—C18 | 1.512 (5) |
O6—C16 | 1.415 (5) | C17—C28 | 1.527 (5) |
O6—H6 | 0.85 (3) | C17—H17 | 0.9800 |
O7—C28 | 1.426 (5) | C18—C19 | 1.509 (4) |
O7—H7 | 0.87 (3) | C18—H18A | 0.9700 |
O8—C27 | 1.359 (4) | C18—H18B | 0.9700 |
O8—C17 | 1.459 (5) | C19—C20 | 1.369 (4) |
O9—C20 | 1.356 (4) | C19—C27 | 1.389 (5) |
O9—C31 | 1.419 (5) | C20—C21 | 1.431 (4) |
O10—C24 | 1.356 (4) | C21—C25 | 1.395 (4) |
O10—C25 | 1.375 (4) | C21—C22 | 1.465 (4) |
O11—C22 | 1.242 (4) | C22—C23 | 1.424 (5) |
O12—C32 | 1.409 (4) | C23—C24 | 1.330 (4) |
O12—H12 | 0.85 (3) | C23—H23 | 0.9300 |
C1—C12 | 1.508 (5) | C24—C32 | 1.488 (5) |
C1—C2 | 1.526 (5) | C25—C26 | 1.388 (4) |
C1—H1A | 0.9800 | C26—C27 | 1.358 (5) |
C2—C3 | 1.498 (5) | C26—H26 | 0.9300 |
C2—H2A | 0.9700 | C28—C29 | 1.511 (6) |
C2—H2B | 0.9700 | C28—C30 | 1.522 (6) |
C3—C4 | 1.354 (5) | C29—H29A | 0.9600 |
C3—C11 | 1.397 (5) | C29—H29B | 0.9600 |
C4—C5 | 1.421 (5) | C29—H29C | 0.9600 |
C5—C9 | 1.403 (4) | C30—H30A | 0.9600 |
C5—C6 | 1.467 (5) | C30—H30B | 0.9600 |
C6—C7 | 1.430 (5) | C30—H30C | 0.9600 |
C7—C8 | 1.328 (5) | C31—H31A | 0.9600 |
C7—H7A | 0.9300 | C31—H31B | 0.9600 |
C8—C16 | 1.485 (5) | C31—H31C | 0.9600 |
C9—C10 | 1.386 (4) | C32—H32A | 0.9700 |
C10—C11 | 1.361 (5) | C32—H32B | 0.9700 |
C10—H10 | 0.9300 | O13—C33 | 1.283 (7) |
C12—C13 | 1.512 (6) | O13—H13 | 0.96 (3) |
C12—C14 | 1.515 (6) | C33—H33A | 0.9600 |
C13—H13A | 0.9600 | C33—H33B | 0.9600 |
C13—H13B | 0.9600 | C33—H33C | 0.9600 |
C13—H13C | 0.9600 | ||
C12—O1—H1 | 115 (4) | H16A—C16—H16B | 107.9 |
C11—O2—C1 | 107.7 (3) | O8—C17—C18 | 105.4 (3) |
C4—O3—C15 | 116.4 (3) | O8—C17—C28 | 108.7 (3) |
C8—O4—C9 | 119.7 (3) | C18—C17—C28 | 116.8 (3) |
C16—O6—H6 | 91 (4) | O8—C17—H17 | 108.5 |
C28—O7—H7 | 109 (4) | C18—C17—H17 | 108.5 |
C27—O8—C17 | 107.7 (3) | C28—C17—H17 | 108.5 |
C20—O9—C31 | 119.9 (3) | C19—C18—C17 | 103.0 (3) |
C24—O10—C25 | 119.4 (2) | C19—C18—H18A | 111.2 |
C32—O12—H12 | 104 (3) | C17—C18—H18A | 111.2 |
O2—C1—C12 | 109.4 (3) | C19—C18—H18B | 111.2 |
O2—C1—C2 | 105.8 (3) | C17—C18—H18B | 111.2 |
C12—C1—C2 | 116.8 (3) | H18A—C18—H18B | 109.1 |
O2—C1—H1A | 108.2 | C20—C19—C27 | 118.5 (3) |
C12—C1—H1A | 108.2 | C20—C19—C18 | 134.7 (3) |
C2—C1—H1A | 108.2 | C27—C19—C18 | 106.8 (3) |
C3—C2—C1 | 102.4 (3) | O9—C20—C19 | 124.5 (3) |
C3—C2—H2A | 111.3 | O9—C20—C21 | 115.4 (2) |
C1—C2—H2A | 111.3 | C19—C20—C21 | 120.0 (3) |
C3—C2—H2B | 111.3 | C25—C21—C20 | 117.2 (2) |
C1—C2—H2B | 111.3 | C25—C21—C22 | 118.0 (3) |
H2A—C2—H2B | 109.2 | C20—C21—C22 | 124.8 (3) |
C4—C3—C11 | 120.1 (3) | O11—C22—C23 | 120.4 (3) |
C4—C3—C2 | 131.9 (3) | O11—C22—C21 | 124.4 (3) |
C11—C3—C2 | 107.9 (3) | C23—C22—C21 | 115.2 (3) |
C3—C4—O3 | 117.6 (3) | C24—C23—C22 | 123.4 (3) |
C3—C4—C5 | 120.0 (3) | C24—C23—H23 | 118.3 |
O3—C4—C5 | 122.4 (3) | C22—C23—H23 | 118.3 |
C9—C5—C4 | 116.6 (3) | C23—C24—O10 | 121.6 (3) |
C9—C5—C6 | 118.2 (3) | C23—C24—C32 | 127.8 (3) |
C4—C5—C6 | 125.2 (3) | O10—C24—C32 | 110.7 (3) |
O5—C6—C7 | 120.9 (4) | O10—C25—C26 | 113.8 (3) |
O5—C6—C5 | 123.3 (4) | O10—C25—C21 | 122.4 (2) |
C7—C6—C5 | 115.8 (3) | C26—C25—C21 | 123.7 (3) |
C8—C7—C6 | 122.1 (3) | C27—C26—C25 | 115.5 (3) |
C8—C7—H7A | 119.0 | C27—C26—H26 | 122.3 |
C6—C7—H7A | 119.0 | C25—C26—H26 | 122.3 |
C7—C8—O4 | 122.6 (3) | C26—C27—O8 | 122.0 (3) |
C7—C8—C16 | 127.6 (3) | C26—C27—C19 | 125.1 (3) |
O4—C8—C16 | 109.8 (3) | O8—C27—C19 | 112.9 (3) |
O4—C9—C10 | 113.9 (3) | O7—C28—C29 | 106.2 (3) |
O4—C9—C5 | 121.7 (3) | O7—C28—C30 | 110.9 (3) |
C10—C9—C5 | 124.4 (3) | C29—C28—C30 | 111.4 (4) |
C11—C10—C9 | 115.4 (3) | O7—C28—C17 | 109.7 (3) |
C11—C10—H10 | 122.3 | C29—C28—C17 | 108.8 (3) |
C9—C10—H10 | 122.3 | C30—C28—C17 | 109.7 (3) |
O2—C11—C10 | 124.1 (3) | C28—C29—H29A | 109.5 |
O2—C11—C3 | 112.5 (3) | C28—C29—H29B | 109.5 |
C10—C11—C3 | 123.4 (3) | H29A—C29—H29B | 109.5 |
O1—C12—C1 | 109.1 (3) | C28—C29—H29C | 109.5 |
O1—C12—C13 | 110.2 (4) | H29A—C29—H29C | 109.5 |
C1—C12—C13 | 110.7 (3) | H29B—C29—H29C | 109.5 |
O1—C12—C14 | 106.2 (3) | C28—C30—H30A | 109.5 |
C1—C12—C14 | 109.2 (3) | C28—C30—H30B | 109.5 |
C13—C12—C14 | 111.3 (4) | H30A—C30—H30B | 109.5 |
C12—C13—H13A | 109.5 | C28—C30—H30C | 109.5 |
C12—C13—H13B | 109.5 | H30A—C30—H30C | 109.5 |
H13A—C13—H13B | 109.5 | H30B—C30—H30C | 109.5 |
C12—C13—H13C | 109.5 | O9—C31—H31A | 109.5 |
H13A—C13—H13C | 109.5 | O9—C31—H31B | 109.5 |
H13B—C13—H13C | 109.5 | H31A—C31—H31B | 109.5 |
C12—C14—H14A | 109.5 | O9—C31—H31C | 109.5 |
C12—C14—H14B | 109.5 | H31A—C31—H31C | 109.5 |
H14A—C14—H14B | 109.5 | H31B—C31—H31C | 109.5 |
C12—C14—H14C | 109.5 | O12—C32—C24 | 111.5 (3) |
H14A—C14—H14C | 109.5 | O12—C32—H32A | 109.3 |
H14B—C14—H14C | 109.5 | C24—C32—H32A | 109.3 |
O3—C15—H15A | 109.5 | O12—C32—H32B | 109.3 |
O3—C15—H15B | 109.5 | C24—C32—H32B | 109.3 |
H15A—C15—H15B | 109.5 | H32A—C32—H32B | 108.0 |
O3—C15—H15C | 109.5 | C33—O13—H13 | 107 (4) |
H15A—C15—H15C | 109.5 | O13—C33—H33A | 109.5 |
H15B—C15—H15C | 109.5 | O13—C33—H33B | 109.5 |
O6—C16—C8 | 112.2 (3) | H33A—C33—H33B | 109.5 |
O6—C16—H16A | 109.2 | O13—C33—H33C | 109.5 |
C8—C16—H16A | 109.2 | H33A—C33—H33C | 109.5 |
O6—C16—H16B | 109.2 | H33B—C33—H33C | 109.5 |
C8—C16—H16B | 109.2 | ||
C15—O3—C4—C3 | 105.4 (4) | C7—C8—C16—O6 | −3.9 (6) |
C15—O3—C4—C5 | −78.1 (4) | O4—C8—C16—O6 | 177.9 (3) |
C31—O9—C20—C19 | 26.1 (5) | C27—O8—C17—C18 | −19.7 (3) |
C31—O9—C20—C21 | −156.1 (3) | C27—O8—C17—C28 | −145.7 (3) |
C11—O2—C1—C12 | −145.4 (3) | O8—C17—C18—C19 | 19.3 (3) |
C11—O2—C1—C2 | −18.8 (3) | C28—C17—C18—C19 | 140.1 (3) |
O2—C1—C2—C3 | 18.2 (3) | C17—C18—C19—C20 | 168.0 (3) |
C12—C1—C2—C3 | 140.2 (3) | C17—C18—C19—C27 | −12.7 (3) |
C1—C2—C3—C4 | 170.2 (4) | C27—C19—C20—O9 | 178.6 (3) |
C1—C2—C3—C11 | −11.7 (4) | C18—C19—C20—O9 | −2.2 (6) |
C11—C3—C4—O3 | 177.0 (3) | C27—C19—C20—C21 | 0.9 (4) |
C2—C3—C4—O3 | −5.1 (6) | C18—C19—C20—C21 | −179.9 (3) |
C11—C3—C4—C5 | 0.3 (5) | O9—C20—C21—C25 | −179.7 (3) |
C2—C3—C4—C5 | 178.2 (3) | C19—C20—C21—C25 | −1.9 (4) |
C3—C4—C5—C9 | −0.6 (4) | O9—C20—C21—C22 | 0.4 (4) |
O3—C4—C5—C9 | −177.0 (3) | C19—C20—C21—C22 | 178.3 (3) |
C3—C4—C5—C6 | 177.0 (3) | C25—C21—C22—O11 | 178.8 (3) |
O3—C4—C5—C6 | 0.5 (5) | C20—C21—C22—O11 | −1.4 (5) |
C9—C5—C6—O5 | 178.0 (4) | C25—C21—C22—C23 | −0.7 (4) |
C4—C5—C6—O5 | 0.5 (6) | C20—C21—C22—C23 | 179.1 (3) |
C9—C5—C6—C7 | −1.5 (5) | O11—C22—C23—C24 | −179.9 (3) |
C4—C5—C6—C7 | −178.9 (3) | C21—C22—C23—C24 | −0.3 (5) |
O5—C6—C7—C8 | −179.3 (4) | C22—C23—C24—O10 | 1.6 (5) |
C5—C6—C7—C8 | 0.1 (5) | C22—C23—C24—C32 | −176.9 (3) |
C6—C7—C8—O4 | 1.5 (6) | C25—O10—C24—C23 | −1.8 (4) |
C6—C7—C8—C16 | −176.4 (4) | C25—O10—C24—C32 | 176.9 (3) |
C9—O4—C8—C7 | −1.7 (5) | C24—O10—C25—C26 | 179.6 (3) |
C9—O4—C8—C16 | 176.6 (3) | C24—O10—C25—C21 | 0.7 (4) |
C8—O4—C9—C10 | 179.2 (3) | C20—C21—C25—O10 | −179.3 (3) |
C8—O4—C9—C5 | 0.2 (4) | C22—C21—C25—O10 | 0.5 (4) |
C4—C5—C9—O4 | 179.1 (3) | C20—C21—C25—C26 | 1.9 (4) |
C6—C5—C9—O4 | 1.4 (5) | C22—C21—C25—C26 | −178.3 (3) |
C4—C5—C9—C10 | 0.2 (5) | O10—C25—C26—C27 | −179.7 (3) |
C6—C5—C9—C10 | −177.5 (3) | C21—C25—C26—C27 | −0.8 (4) |
O4—C9—C10—C11 | −178.5 (3) | C25—C26—C27—O8 | 179.7 (3) |
C5—C9—C10—C11 | 0.5 (5) | C25—C26—C27—C19 | −0.3 (5) |
C1—O2—C11—C10 | −169.7 (3) | C17—O8—C27—C26 | −167.8 (3) |
C1—O2—C11—C3 | 11.7 (4) | C17—O8—C27—C19 | 12.1 (3) |
C9—C10—C11—O2 | −179.1 (3) | C20—C19—C27—C26 | 0.2 (5) |
C9—C10—C11—C3 | −0.7 (5) | C18—C19—C27—C26 | −179.2 (3) |
C4—C3—C11—O2 | 178.9 (3) | C20—C19—C27—O8 | −179.7 (3) |
C2—C3—C11—O2 | 0.5 (4) | C18—C19—C27—O8 | 0.9 (4) |
C4—C3—C11—C10 | 0.3 (5) | O8—C17—C28—O7 | 67.5 (4) |
C2—C3—C11—C10 | −178.0 (3) | C18—C17—C28—O7 | −51.5 (4) |
O2—C1—C12—O1 | 64.8 (4) | O8—C17—C28—C29 | −176.7 (3) |
C2—C1—C12—O1 | −55.4 (4) | C18—C17—C28—C29 | 64.3 (4) |
O2—C1—C12—C13 | −56.6 (4) | O8—C17—C28—C30 | −54.6 (4) |
C2—C1—C12—C13 | −176.8 (4) | C18—C17—C28—C30 | −173.6 (4) |
O2—C1—C12—C14 | −179.6 (3) | C23—C24—C32—O12 | −4.5 (5) |
C2—C1—C12—C14 | 60.3 (4) | O10—C24—C32—O12 | 176.9 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
O12—H12···O9i | 0.85 (3) | 2.41 (4) | 2.934 (3) | 120 (4) |
O12—H12···O11i | 0.85 (3) | 1.99 (3) | 2.812 (3) | 162 (5) |
O6—H6···O13ii | 0.85 (3) | 1.80 (3) | 2.618 (5) | 159 (6) |
O13—H13···O11 | 0.96 (3) | 1.83 (4) | 2.708 (4) | 150 (6) |
O7—H7···O6 | 0.87 (3) | 1.92 (3) | 2.779 (4) | 169 (5) |
O1—H1···O12 | 0.85 (3) | 1.98 (3) | 2.809 (4) | 164 (5) |
Symmetry codes: (i) −x+1, y−1/2, −z+1; (ii) x, y, z+1. |
Experimental details
Crystal data | |
Chemical formula | C16H18O6·0.5CH4O |
Mr | 322.33 |
Crystal system, space group | Monoclinic, P21 |
Temperature (K) | 294 |
a, b, c (Å) | 9.4092 (14), 13.4176 (19), 12.6903 (18) |
β (°) | 91.600 (2) |
V (Å3) | 1601.5 (4) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.10 |
Crystal size (mm) | 0.30 × 0.28 × 0.24 |
Data collection | |
Diffractometer | Bruker SMART CCD area-detector |
Absorption correction | Multi-scan (SADABS; Bruker, 1997) |
Tmin, Tmax | 0.956, 0.976 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 9210, 3408, 2556 |
Rint | 0.027 |
(sin θ/λ)max (Å−1) | 0.626 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.039, 0.108, 1.03 |
No. of reflections | 3408 |
No. of parameters | 437 |
No. of restraints | 12 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.17, −0.21 |
Computer programs: SMART (Bruker, 1997), SAINT (Bruker, 1997), SHELXS97 (Sheldrick, 1997), SHELXL97 (Sheldrick, 1997), SHELXTL (Bruker, 1997).
C15—O3—C4—C3 | 105.4 (4) | C31—O9—C20—C19 | 26.1 (5) |
C15—O3—C4—C5 | −78.1 (4) | C31—O9—C20—C21 | −156.1 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
O12—H12···O9i | 0.85 (3) | 2.41 (4) | 2.934 (3) | 120 (4) |
O12—H12···O11i | 0.85 (3) | 1.99 (3) | 2.812 (3) | 162 (5) |
O6—H6···O13ii | 0.85 (3) | 1.80 (3) | 2.618 (5) | 159 (6) |
O13—H13···O11 | 0.96 (3) | 1.83 (4) | 2.708 (4) | 150 (6) |
O7—H7···O6 | 0.87 (3) | 1.92 (3) | 2.779 (4) | 169 (5) |
O1—H1···O12 | 0.85 (3) | 1.98 (3) | 2.809 (4) | 164 (5) |
Symmetry codes: (i) −x+1, y−1/2, −z+1; (ii) x, y, z+1. |
Acknowledgements
This work was supported by the fund of the SRTP of Henan University of Science and Technology.
References
Bruker (1997). SMART (Version 5.611), SAINT (Version 6.0), SADABS (Version 2.03) and SHELXTL (Version 5.10). Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Kusano, A., Takahira, M., Shibano, M., Miyase, T. & Kusano, G. (1999). Chem. Pharm. Bull. 47, 511–516. CrossRef CAS Google Scholar
Kusano, A., Takahira, M., Shibano, M., Miyase, T., Okuyama, T. & Kusano, G. (1998). Heterocycles, 48, 1003–1013. CrossRef CAS Google Scholar
Sheldrick, G. M. (1997). SHELXS97and SHELXL97. University of Göttingen, Germany. Google Scholar
Wan, D. R. (1990). J. Chin. Med. Mater. 13, 3–15. Google Scholar
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Actaea asiatica Hara (Ranunculaceae) is widely distributed in the southwest and northwest of the People's Republic of China. As a Chinesa folk medicine, its rhizome is used to treat headache, sore throat, measles, pertussis, prolapse of uterus (Wan, 1990). Previous phytochemical investigations have reported in the isolation of cimiaceroside A and 26-deoxycimicifugoside from this plant (Kusano et al., 1998, 1999). To investigate the bioactive natural products from A. asiatica, chemical studies of the rhizome of the plant were undertaken by screening using immunopotent tests in vitro, we obtained a compund, viz. cimifugin, from the petroleum ether extract. The structure of cimifugin was elucidated by extensive spectroscopic analysis, including two-dimensional NMR spectroscopy, and established unequivocally by single-crystal X-ray diffraction analysis.
The molecular structure of (I) and the atom-numbering scheme are shown in Fig. 1. The asymmetric unit of (I) contains two independent molecules and a methanol of solvation. The molecule is composed of a fused five-numbered ring and two fused six-numbered viz. A(C1–C3/C11/O2), B(C3–C5/C9–C11) and C(C5–C9/O4). In the two molecules, two fused six-numbered (B and C) are almost planar with the r.m.s. deviations of 0.0129 (4) and 1.0103 (4) Å, respectively, while ring C does not deviate form the chromone plane. The O5—C6—C5 and C7—C6—C5 angles are 123.3 (4)° and 115.8 (3)°, respectively, which indicates that carbonyl C6 atom slightly deviates from the ideal value of 120°. The similar deviation is also observed for the C22 with the angles of O11—C22—C21 [124.4 (3)°] and C23—C22—C21 [115.2 (3)°].
The hydroxy groups are attached at atoms C12, C16, C28 and C32. The methoxy group located at atoms C4 and C20. The interactions of intermolecular and intramolecular hydrogen bonds are formed between the hydroxy and carbonyl groups, which stablize the crystal structure.