organic compounds
3-Butyl-2-propylamino-1-benzothieno[3,2-d]pyrimidin-4(3H)-one
aCollege of Basic Science, Huazhong Agricultural University, Wuhan 430070, People's Republic of China
*Correspondence e-mail: xsz1976@yahoo.com.cn
In the title compound, C17H21N3OS, the propyl and butyl groups are disordered over two positions; site occupation factors are 0.304 (10) and 0.696 (10). The three fused rings are coplanar. In the intermolecular N—H⋯O and C—H⋯O hydrogen bonds link the molecules. Further stability is provided by offset π–π stacking interactions. Adjacent thienophene–pyrimidine and pyrimidine–benzene rings have centroid–centroid distances of 3.96 (1) and 3.55 (2) Å, respectively.
Related literature
For general background, see: Chambhare et al. (2003); Janiak (2000). For related literature, see: Ding et al. (2004). For bond-length data, see: Allen et al. (1987).
Experimental
Crystal data
|
Data collection
|
Refinement
|
Data collection: SMART (Bruker, 2001); cell SAINT (Bruker, 2001); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: PLATON (Spek, 2003); software used to prepare material for publication: SHELXL97.
Supporting information
https://doi.org/10.1107/S1600536807062484/hk2396sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536807062484/hk2396Isup2.hkl
The title compound was synthesized according to a literature method (Ding et al., 2004). The product was recrystallized from ethanol/dichloromethane (1:2 v/v) at room temperature to give crystals suitable for single-crystal X-ray analysis.
When the
was solved, propyl and butyl groups were found to be disordered. During with isotropic thermal parameters, the occupancies of disordered H atoms were refined as H3A, H11, H12A, H12B, H12C, H13A, H13B, H13C = 0.696 (10) and H3', H11', H12D, H12E, H12F, H13D, H13E, H13F = 0.304 (10), while the remaining site occupancy factors were also refined as N3, C11, C12,, C13 = 0.696 (10) and N3', C11', C12', C13' = 0.304 (10), during anisotropic for propyl group. On the other hand, for butyl group the occupancies of disordered H and non-H atoms were also refined in a similar way as H14A, H14B, H15A, H15B, H16A, H16B, H17A, H17B, H17C = 0.622 (11) and H14C, H14D, H15C, H15D, H16C, H16D, H17D, H17E, H17F = 0.378 (11), while the remaining site occupancy factors were also refined as C14, C15, C16,, C17 = 0.622 (11) and C14', C15', C16', C17' = 0.378 (11). H atoms were positioned geometrically, with N—H = 0.86 Å (for NH) and C—H = 0.93, 0.98, 0.96 and 0.97 Å, for aromatic, methine, methyl and methylene H atoms and constrained to ride on their parent atoms, with Uiso(H) = xUeq(C,N), where x = 1.5 for methyl H and x = 1.2 for all other H atoms.Thienopyrimidine derivatives are of interest as possible antiviral agents, and because of their other biological properties, including antibacterial, antifungal, antiallergic and anti inflammatory activities (Chambhare et al., 2003). We have recently focused on the synthesis of the fused heterocyclic systems containing thienopyrimidine via aza-Wittig reactions at room temperature (Ding et al., 2004). We report herein the structure of one such thienopyrimidine derivative, the title compound, (I).
In the molecule of (I), (Fig. 1) the bond lengths and angles are generally within normal ranges (Allen et al., 1987). When the
was solved, propyl and butyl groups were found to be disordered.Rings A (C1—C6), B (S1/C1/C6—C8) and C (N1/N2/C7—C10) are, of course, planar. The three fused rings A, B and C are also co-planar. The maximum deviation from the benzo[4,5]thieno[3,2-e]-pyrimidinone mean plane is 0.027 (3) Å (for atom C7).
In the π-π stacking interactions (Janiak, 2000). The adjacent B, C and A, C rings have centroid-centroid distances of 3.96 (1) %A and 3.55 (2) %A, respectively, [symmetry code: -x, -y, 2 - z].
intermolecular N—H···O and C—H···O hydrogen bonds (Table 1) link the molecules (Fig. 2), in which they may be effective in the stabilization of the structure. Further stability is provided by offsetFor general background, see: Chambhare et al. (2003); Janiak (2000). For related literature, see: Ding et al. (2004). For bond-length data, see: Allen et al. (1987).
Data collection: SMART (Bruker, 2001); cell
SAINT (Bruker, 2001); data reduction: SAINT (Bruker, 2001); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: PLATON (Spek, 2003).C17H21N3OS | F(000) = 672 |
Mr = 315.43 | Dx = 1.230 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 4476 reflections |
a = 11.4322 (6) Å | θ = 2.4–24.2° |
b = 14.2791 (8) Å | µ = 0.20 mm−1 |
c = 11.6704 (6) Å | T = 298 K |
β = 116.606 (1)° | Block, colorless |
V = 1703.36 (16) Å3 | 0.30 × 0.20 × 0.20 mm |
Z = 4 |
Bruker SMART 4K CCD area-detector diffractometer | 2599 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.054 |
Graphite monochromator | θmax = 27.0°, θmin = 2.0° |
φ and ω scans | h = −14→14 |
15640 measured reflections | k = −17→18 |
3712 independent reflections | l = −14→14 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.058 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.175 | H-atom parameters constrained |
S = 1.04 | w = 1/[σ2(Fo2) + (0.107P)2] where P = (Fo2 + 2Fc2)/3 |
3712 reflections | (Δ/σ)max = 0.004 |
279 parameters | Δρmax = 0.35 e Å−3 |
23 restraints | Δρmin = −0.16 e Å−3 |
C17H21N3OS | V = 1703.36 (16) Å3 |
Mr = 315.43 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 11.4322 (6) Å | µ = 0.20 mm−1 |
b = 14.2791 (8) Å | T = 298 K |
c = 11.6704 (6) Å | 0.30 × 0.20 × 0.20 mm |
β = 116.606 (1)° |
Bruker SMART 4K CCD area-detector diffractometer | 2599 reflections with I > 2σ(I) |
15640 measured reflections | Rint = 0.054 |
3712 independent reflections |
R[F2 > 2σ(F2)] = 0.058 | 23 restraints |
wR(F2) = 0.175 | H-atom parameters constrained |
S = 1.04 | Δρmax = 0.35 e Å−3 |
3712 reflections | Δρmin = −0.16 e Å−3 |
279 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
S1 | 0.13711 (6) | 0.04643 (4) | 1.26890 (6) | 0.0767 (3) | |
O1 | 0.22957 (17) | 0.23409 (10) | 1.18589 (13) | 0.0782 (5) | |
N1 | 0.21439 (19) | −0.00118 (12) | 0.97855 (15) | 0.0679 (5) | |
N2 | 0.25553 (18) | 0.16172 (11) | 1.02369 (15) | 0.0646 (5) | |
N3 | 0.2992 (7) | 0.0903 (4) | 0.8663 (6) | 0.0835 (17) | 0.696 (10) |
H3A | 0.3215 | 0.1450 | 0.8524 | 0.100* | 0.696 (10) |
N3' | 0.2371 (11) | 0.0885 (9) | 0.8333 (9) | 0.057 (2) | 0.304 (10) |
H3' | 0.2257 | 0.1427 | 0.7977 | 0.068* | 0.304 (10) |
C1 | 0.14037 (18) | −0.08829 (14) | 1.11773 (18) | 0.0588 (5) | |
C2 | 0.1241 (2) | −0.17839 (15) | 1.0674 (2) | 0.0775 (6) | |
H2 | 0.1433 | −0.1913 | 0.9995 | 0.093* | |
C3 | 0.0795 (3) | −0.24799 (17) | 1.1191 (3) | 0.0921 (8) | |
H3 | 0.0683 | −0.3082 | 1.0855 | 0.110* | |
C4 | 0.0510 (3) | −0.2299 (2) | 1.2203 (3) | 0.0969 (8) | |
H4 | 0.0207 | −0.2780 | 1.2539 | 0.116* | |
C5 | 0.0668 (3) | −0.14217 (19) | 1.2713 (3) | 0.0897 (7) | |
H5 | 0.0479 | −0.1303 | 1.3396 | 0.108* | |
C6 | 0.1117 (2) | −0.07033 (16) | 1.2202 (2) | 0.0663 (5) | |
C7 | 0.18358 (19) | −0.00435 (13) | 1.07820 (16) | 0.0550 (5) | |
C8 | 0.1850 (2) | 0.07176 (14) | 1.15013 (17) | 0.0569 (5) | |
C9 | 0.2227 (2) | 0.16126 (14) | 1.12618 (17) | 0.0585 (5) | |
C10 | 0.2479 (2) | 0.08120 (15) | 0.95393 (19) | 0.0708 (6) | |
C11 | 0.3166 (9) | 0.0091 (5) | 0.7964 (8) | 0.115 (3) | 0.696 (10) |
H11 | 0.3261 | −0.0490 | 0.8446 | 0.138* | 0.696 (10) |
C11' | 0.2443 (15) | 0.0099 (9) | 0.7669 (9) | 0.085 (5) | 0.304 (10) |
H11' | 0.1795 | −0.0319 | 0.7733 | 0.102* | 0.304 (10) |
C12 | 0.4388 (5) | 0.0288 (5) | 0.7817 (5) | 0.118 (2) | 0.696 (10) |
H12A | 0.4292 | 0.0873 | 0.7377 | 0.177* | 0.696 (10) |
H12B | 0.4525 | −0.0206 | 0.7332 | 0.177* | 0.696 (10) |
H12C | 0.5125 | 0.0324 | 0.8648 | 0.177* | 0.696 (10) |
C12' | 0.3646 (15) | −0.0512 (13) | 0.8141 (10) | 0.149 (9) | 0.304 (10) |
H12D | 0.4229 | −0.0277 | 0.7820 | 0.223* | 0.304 (10) |
H12E | 0.3395 | −0.1142 | 0.7843 | 0.223* | 0.304 (10) |
H12F | 0.4080 | −0.0507 | 0.9061 | 0.223* | 0.304 (10) |
C13 | 0.1988 (6) | 0.0047 (7) | 0.6697 (10) | 0.139 (4) | 0.696 (10) |
H13A | 0.1233 | −0.0101 | 0.6821 | 0.208* | 0.696 (10) |
H13B | 0.2109 | −0.0429 | 0.6179 | 0.208* | 0.696 (10) |
H13C | 0.1862 | 0.0641 | 0.6274 | 0.208* | 0.696 (10) |
C13' | 0.1899 (19) | 0.0248 (14) | 0.6251 (10) | 0.128 (8) | 0.304 (10) |
H13D | 0.1081 | 0.0574 | 0.5945 | 0.193* | 0.304 (10) |
H13E | 0.1764 | −0.0348 | 0.5829 | 0.193* | 0.304 (10) |
H13F | 0.2504 | 0.0611 | 0.6072 | 0.193* | 0.304 (10) |
C14 | 0.3278 (9) | 0.2503 (6) | 1.0136 (9) | 0.079 (3) | 0.622 (11) |
H14A | 0.3095 | 0.2584 | 0.9247 | 0.095* | 0.622 (11) |
H14B | 0.2914 | 0.3040 | 1.0374 | 0.095* | 0.622 (11) |
C14' | 0.2809 (11) | 0.2515 (8) | 0.9807 (12) | 0.055 (2) | 0.378 (11) |
H14C | 0.2538 | 0.3028 | 1.0179 | 0.066* | 0.378 (11) |
H14D | 0.2356 | 0.2564 | 0.8881 | 0.066* | 0.378 (11) |
C15 | 0.4741 (8) | 0.2515 (6) | 1.0939 (8) | 0.128 (3) | 0.622 (11) |
H15A | 0.5120 | 0.1976 | 1.0725 | 0.154* | 0.622 (11) |
H15B | 0.4941 | 0.2468 | 1.1838 | 0.154* | 0.622 (11) |
C15' | 0.4291 (10) | 0.2516 (6) | 1.0287 (12) | 0.082 (3) | 0.378 (11) |
H15C | 0.4555 | 0.1983 | 0.9941 | 0.099* | 0.378 (11) |
H15D | 0.4733 | 0.2479 | 1.1215 | 0.099* | 0.378 (11) |
C16 | 0.5353 (10) | 0.3408 (6) | 1.0727 (9) | 0.174 (4) | 0.622 (11) |
H16A | 0.4767 | 0.3931 | 1.0603 | 0.209* | 0.622 (11) |
H16B | 0.6166 | 0.3535 | 1.1483 | 0.209* | 0.622 (11) |
C16' | 0.4644 (9) | 0.3432 (6) | 0.9833 (10) | 0.100 (3) | 0.378 (11) |
H16C | 0.4288 | 0.3431 | 0.8907 | 0.120* | 0.378 (11) |
H16D | 0.4274 | 0.3959 | 1.0083 | 0.120* | 0.378 (11) |
C17 | 0.5612 (12) | 0.3325 (9) | 0.9614 (9) | 0.179 (4) | 0.622 (11) |
H17A | 0.6154 | 0.2788 | 0.9714 | 0.269* | 0.622 (11) |
H17B | 0.6053 | 0.3878 | 0.9543 | 0.269* | 0.622 (11) |
H17C | 0.4800 | 0.3255 | 0.8854 | 0.269* | 0.622 (11) |
C17' | 0.6098 (10) | 0.3518 (14) | 1.0427 (18) | 0.194 (9) | 0.378 (11) |
H17D | 0.6484 | 0.3093 | 1.1136 | 0.291* | 0.378 (11) |
H17E | 0.6347 | 0.4148 | 1.0725 | 0.291* | 0.378 (11) |
H17F | 0.6399 | 0.3370 | 0.9801 | 0.291* | 0.378 (11) |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.1169 (5) | 0.0600 (4) | 0.0808 (4) | −0.0027 (3) | 0.0688 (4) | −0.0042 (3) |
O1 | 0.1334 (13) | 0.0518 (9) | 0.0645 (8) | −0.0032 (8) | 0.0578 (9) | −0.0075 (7) |
N1 | 0.1108 (14) | 0.0461 (10) | 0.0552 (9) | 0.0177 (9) | 0.0447 (9) | 0.0053 (7) |
N2 | 0.1050 (12) | 0.0456 (9) | 0.0533 (9) | 0.0107 (8) | 0.0445 (9) | 0.0074 (7) |
N3 | 0.142 (5) | 0.057 (2) | 0.080 (3) | 0.027 (3) | 0.075 (4) | 0.017 (2) |
N3' | 0.087 (6) | 0.043 (3) | 0.047 (4) | 0.017 (4) | 0.035 (4) | 0.007 (3) |
C1 | 0.0655 (11) | 0.0501 (11) | 0.0567 (10) | 0.0086 (9) | 0.0237 (9) | 0.0051 (8) |
C2 | 0.1061 (17) | 0.0522 (13) | 0.0719 (13) | 0.0070 (11) | 0.0378 (12) | 0.0010 (10) |
C3 | 0.1158 (19) | 0.0537 (14) | 0.0965 (18) | −0.0102 (13) | 0.0384 (16) | −0.0010 (13) |
C4 | 0.112 (2) | 0.0737 (18) | 0.109 (2) | −0.0186 (15) | 0.0540 (17) | 0.0101 (15) |
C5 | 0.1149 (19) | 0.0739 (17) | 0.1055 (19) | −0.0128 (14) | 0.0718 (16) | 0.0048 (14) |
C6 | 0.0756 (13) | 0.0568 (12) | 0.0731 (12) | 0.0011 (9) | 0.0393 (11) | 0.0019 (10) |
C7 | 0.0678 (11) | 0.0480 (11) | 0.0457 (9) | 0.0132 (8) | 0.0222 (8) | 0.0056 (8) |
C8 | 0.0749 (12) | 0.0507 (11) | 0.0504 (10) | 0.0084 (9) | 0.0329 (9) | 0.0028 (8) |
C9 | 0.0841 (13) | 0.0485 (11) | 0.0482 (10) | 0.0082 (9) | 0.0343 (9) | 0.0024 (8) |
C10 | 0.1190 (17) | 0.0495 (12) | 0.0595 (11) | 0.0226 (11) | 0.0538 (12) | 0.0090 (9) |
C11 | 0.212 (8) | 0.070 (3) | 0.125 (5) | 0.050 (5) | 0.132 (6) | 0.024 (3) |
C11' | 0.175 (13) | 0.053 (6) | 0.055 (6) | 0.052 (8) | 0.078 (8) | 0.018 (4) |
C12 | 0.126 (4) | 0.135 (5) | 0.105 (3) | 0.038 (3) | 0.063 (3) | −0.008 (3) |
C12' | 0.204 (15) | 0.134 (14) | 0.103 (8) | 0.106 (12) | 0.065 (8) | 0.010 (7) |
C13 | 0.131 (6) | 0.111 (6) | 0.210 (11) | −0.033 (4) | 0.109 (7) | −0.089 (7) |
C13' | 0.221 (19) | 0.089 (10) | 0.040 (5) | 0.019 (10) | 0.028 (6) | −0.016 (5) |
C14 | 0.126 (7) | 0.059 (3) | 0.053 (4) | 0.006 (4) | 0.041 (5) | 0.013 (2) |
C14' | 0.088 (6) | 0.038 (3) | 0.049 (6) | 0.004 (4) | 0.039 (5) | 0.002 (3) |
C15 | 0.113 (5) | 0.155 (6) | 0.090 (5) | −0.047 (4) | 0.022 (4) | 0.025 (4) |
C15' | 0.078 (6) | 0.084 (5) | 0.080 (6) | −0.012 (4) | 0.032 (5) | 0.014 (4) |
C16 | 0.145 (7) | 0.237 (10) | 0.135 (8) | −0.084 (6) | 0.058 (6) | −0.015 (6) |
C16' | 0.112 (6) | 0.109 (6) | 0.073 (5) | −0.034 (5) | 0.034 (5) | −0.001 (4) |
C17 | 0.162 (9) | 0.259 (12) | 0.140 (7) | −0.051 (8) | 0.088 (7) | 0.006 (8) |
C17' | 0.157 (12) | 0.262 (19) | 0.145 (14) | −0.116 (13) | 0.052 (10) | 0.013 (14) |
N3—C11 | 1.482 (9) | C12'—H12D | 0.9600 |
N3—H3A | 0.8600 | C12'—H12E | 0.9600 |
N3'—C11' | 1.387 (16) | C12'—H12F | 0.9600 |
N3'—H3' | 0.8600 | C13—H13A | 0.9600 |
C1—C2 | 1.392 (3) | C13—H13B | 0.9600 |
C1—C6 | 1.397 (3) | C13—H13C | 0.9600 |
C1—C7 | 1.448 (3) | C13'—H13D | 0.9600 |
C2—C3 | 1.374 (3) | C13'—H13E | 0.9600 |
C2—H2 | 0.9300 | C13'—H13F | 0.9600 |
C3—C4 | 1.384 (4) | C14—C15 | 1.507 (7) |
C3—H3 | 0.9300 | C14—N2 | 1.544 (7) |
C4—C5 | 1.364 (4) | C14—H14A | 0.9700 |
C4—H4 | 0.9300 | C14—H14B | 0.9700 |
C5—C6 | 1.395 (3) | C14'—N2 | 1.452 (9) |
C5—H5 | 0.9300 | C14'—C15' | 1.528 (9) |
C6—S1 | 1.743 (2) | C14'—H14C | 0.9700 |
C7—N1 | 1.359 (3) | C14'—H14D | 0.9700 |
C7—C8 | 1.369 (3) | C15—C16 | 1.528 (7) |
C8—C9 | 1.416 (3) | C15—H15A | 0.9700 |
C8—S1 | 1.741 (2) | C15—H15B | 0.9700 |
C9—O1 | 1.235 (2) | C15'—C16' | 1.531 (8) |
C9—N2 | 1.405 (2) | C15'—H15C | 0.9700 |
C10—N1 | 1.308 (3) | C15'—H15D | 0.9700 |
C10—N3' | 1.361 (10) | C16—C17 | 1.461 (8) |
C10—N2 | 1.389 (3) | C16—H16A | 0.9700 |
C10—N3 | 1.394 (5) | C16—H16B | 0.9700 |
C11—C13 | 1.490 (7) | C16'—C17' | 1.493 (9) |
C11—C12 | 1.508 (7) | C16'—H16C | 0.9700 |
C11—H11 | 0.9800 | C16'—H16D | 0.9700 |
C11'—C13' | 1.499 (9) | C17—H17A | 0.9600 |
C11'—C12' | 1.510 (9) | C17—H17B | 0.9600 |
C11'—H11' | 0.9800 | C17—H17C | 0.9600 |
C12—H12A | 0.9600 | C17'—H17D | 0.9600 |
C12—H12B | 0.9600 | C17'—H17E | 0.9600 |
C12—H12C | 0.9600 | C17'—H17F | 0.9600 |
C8—S1—C6 | 90.27 (10) | C12'—C11'—H11' | 102.4 |
C10—N1—C7 | 115.57 (16) | C11'—C12'—H12D | 109.5 |
C10—N2—C9 | 121.65 (17) | C11'—C12'—H12E | 109.5 |
C10—N2—C14' | 119.9 (6) | H12D—C12'—H12E | 109.5 |
C9—N2—C14' | 118.0 (6) | C11'—C12'—H12F | 109.5 |
C10—N2—C14 | 121.9 (4) | H12D—C12'—H12F | 109.5 |
C9—N2—C14 | 115.1 (4) | H12E—C12'—H12F | 109.5 |
C10—N3—C11 | 122.4 (6) | C11'—C13'—H13D | 109.5 |
C10—N3—H3A | 118.8 | C11'—C13'—H13E | 109.5 |
C11—N3—H3A | 118.8 | H13D—C13'—H13E | 109.5 |
C10—N3'—C11' | 121.0 (10) | C11'—C13'—H13F | 109.5 |
C10—N3'—H3' | 119.5 | H13D—C13'—H13F | 109.5 |
C11'—N3'—H3' | 119.5 | H13E—C13'—H13F | 109.5 |
C2—C1—C6 | 119.5 (2) | C15—C14—N2 | 116.4 (6) |
C2—C1—C7 | 129.1 (2) | C15—C14—H14A | 108.2 |
C6—C1—C7 | 111.39 (18) | N2—C14—H14A | 108.2 |
C3—C2—C1 | 119.2 (2) | C15—C14—H14B | 108.2 |
C3—C2—H2 | 120.4 | N2—C14—H14B | 108.2 |
C1—C2—H2 | 120.4 | H14A—C14—H14B | 107.3 |
C2—C3—C4 | 121.1 (2) | N2—C14'—C15' | 103.6 (7) |
C2—C3—H3 | 119.5 | N2—C14'—H14C | 111.0 |
C4—C3—H3 | 119.5 | C15'—C14'—H14C | 111.0 |
C5—C4—C3 | 120.5 (2) | N2—C14'—H14D | 111.0 |
C5—C4—H4 | 119.7 | C15'—C14'—H14D | 111.0 |
C3—C4—H4 | 119.7 | H14C—C14'—H14D | 109.0 |
C4—C5—C6 | 119.4 (3) | C14—C15—C16 | 111.7 (6) |
C4—C5—H5 | 120.3 | C14—C15—H15A | 109.3 |
C6—C5—H5 | 120.3 | C16—C15—H15A | 109.3 |
C5—C6—C1 | 120.2 (2) | C14—C15—H15B | 109.3 |
C5—C6—S1 | 127.07 (19) | C16—C15—H15B | 109.3 |
C1—C6—S1 | 112.71 (16) | H15A—C15—H15B | 107.9 |
N1—C7—C8 | 124.20 (18) | C14'—C15'—C16' | 107.1 (7) |
N1—C7—C1 | 123.82 (17) | C14'—C15'—H15C | 110.3 |
C8—C7—C1 | 111.94 (18) | C16'—C15'—H15C | 110.3 |
C7—C8—C9 | 121.09 (18) | C14'—C15'—H15D | 110.3 |
C7—C8—S1 | 113.69 (15) | C16'—C15'—H15D | 110.3 |
C9—C8—S1 | 125.23 (15) | H15C—C15'—H15D | 108.5 |
O1—C9—N2 | 120.20 (18) | C17—C16—C15 | 111.5 (7) |
O1—C9—C8 | 126.63 (18) | C17—C16—H16A | 109.3 |
N2—C9—C8 | 113.17 (16) | C15—C16—H16A | 109.3 |
N1—C10—N3' | 113.4 (6) | C17—C16—H16B | 109.3 |
N1—C10—N2 | 124.28 (18) | C15—C16—H16B | 109.3 |
N3'—C10—N2 | 119.7 (5) | H16A—C16—H16B | 108.0 |
N1—C10—N3 | 120.3 (3) | C17'—C16'—C15' | 108.7 (7) |
N2—C10—N3 | 114.6 (3) | C17'—C16'—H16C | 109.9 |
N3—C11—C13 | 107.2 (6) | C15'—C16'—H16C | 109.9 |
N3—C11—C12 | 106.0 (6) | C17'—C16'—H16D | 109.9 |
C13—C11—C12 | 111.5 (5) | C15'—C16'—H16D | 109.9 |
N3—C11—H11 | 110.7 | H16C—C16'—H16D | 108.3 |
C13—C11—H11 | 110.7 | C16'—C17'—H17D | 109.5 |
C12—C11—H11 | 110.7 | C16'—C17'—H17E | 109.5 |
N3'—C11'—C13' | 113.8 (11) | H17D—C17'—H17E | 109.5 |
N3'—C11'—C12' | 122.5 (11) | C16'—C17'—H17F | 109.5 |
C13'—C11'—C12' | 110.1 (8) | H17D—C17'—H17F | 109.5 |
N3'—C11'—H11' | 102.4 | H17E—C17'—H17F | 109.5 |
C13'—C11'—H11' | 102.4 | ||
C6—C1—C2—C3 | 0.3 (3) | C14—C15—C16—C17 | −84.7 (12) |
C7—C1—C2—C3 | −178.9 (2) | N2—C14'—C15'—C16' | 178.1 (8) |
C1—C2—C3—C4 | −0.2 (4) | C14'—C15'—C16'—C17' | 172.6 (15) |
C2—C3—C4—C5 | −0.1 (4) | N3'—C10—N1—C7 | −160.1 (5) |
C3—C4—C5—C6 | 0.3 (4) | N2—C10—N1—C7 | 1.3 (3) |
C4—C5—C6—C1 | −0.1 (4) | N3—C10—N1—C7 | 170.8 (4) |
C4—C5—C6—S1 | 179.2 (2) | C8—C7—N1—C10 | 0.5 (3) |
C2—C1—C6—C5 | −0.2 (3) | C1—C7—N1—C10 | 178.05 (18) |
C7—C1—C6—C5 | 179.2 (2) | N1—C10—N2—C9 | −2.2 (3) |
C2—C1—C6—S1 | −179.60 (17) | N3'—C10—N2—C9 | 158.1 (6) |
C7—C1—C6—S1 | −0.2 (2) | N3—C10—N2—C9 | −172.3 (4) |
C2—C1—C7—N1 | 1.2 (3) | N1—C10—N2—C14' | −173.8 (6) |
C6—C1—C7—N1 | −178.14 (17) | N3'—C10—N2—C14' | −13.5 (8) |
C2—C1—C7—C8 | 178.9 (2) | N3—C10—N2—C14' | 16.1 (7) |
C6—C1—C7—C8 | −0.4 (2) | N1—C10—N2—C14 | 164.2 (4) |
N1—C7—C8—C9 | −1.5 (3) | N3'—C10—N2—C14 | −35.5 (7) |
C1—C7—C8—C9 | −179.22 (17) | N3—C10—N2—C14 | −5.9 (6) |
N1—C7—C8—S1 | 178.56 (15) | O1—C9—N2—C10 | −179.5 (2) |
C1—C7—C8—S1 | 0.8 (2) | C8—C9—N2—C10 | 1.1 (3) |
C7—C8—C9—O1 | −178.78 (19) | O1—C9—N2—C14' | −7.7 (6) |
S1—C8—C9—O1 | 1.2 (3) | C8—C9—N2—C14' | 172.9 (5) |
C7—C8—C9—N2 | 0.5 (3) | O1—C9—N2—C14 | 13.3 (4) |
S1—C8—C9—N2 | −179.48 (14) | C8—C9—N2—C14 | −166.1 (4) |
N1—C10—N3—C11 | 0.8 (8) | C15'—C14'—N2—C10 | −80.9 (8) |
N3'—C10—N3—C11 | −81.1 (18) | C15'—C14'—N2—C9 | 107.1 (8) |
N2—C10—N3—C11 | 171.4 (5) | C15'—C14'—N2—C14 | 21 (2) |
C10—N3—C11—C13 | 95.4 (8) | C15—C14—N2—C10 | −82.4 (8) |
C10—N3—C11—C12 | −145.4 (7) | C15—C14—N2—C9 | 84.8 (8) |
N1—C10—N3'—C11' | −25.1 (12) | C15—C14—N2—C14' | −172 (3) |
N2—C10—N3'—C11' | 172.6 (9) | C7—C8—S1—C6 | −0.77 (16) |
N3—C10—N3'—C11' | 86.3 (17) | C9—C8—S1—C6 | 179.24 (19) |
C10—N3'—C11'—C13' | 161.8 (14) | C5—C6—S1—C8 | −178.8 (2) |
C10—N3'—C11'—C12' | −61.6 (18) | C1—C6—S1—C8 | 0.55 (16) |
N2—C14—C15—C16 | 178.0 (7) |
D—H···A | D—H | H···A | D···A | D—H···A |
C14—H14A···O1i | 0.97 | 2.52 | 3.478 (9) | 171 |
N3—H3A···O1i | 0.86 | 2.46 | 3.140 (6) | 137 |
Symmetry code: (i) x, −y+1/2, z−1/2. |
Experimental details
Crystal data | |
Chemical formula | C17H21N3OS |
Mr | 315.43 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 298 |
a, b, c (Å) | 11.4322 (6), 14.2791 (8), 11.6704 (6) |
β (°) | 116.606 (1) |
V (Å3) | 1703.36 (16) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.20 |
Crystal size (mm) | 0.30 × 0.20 × 0.20 |
Data collection | |
Diffractometer | Bruker SMART 4K CCD area-detector diffractometer |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 15640, 3712, 2599 |
Rint | 0.054 |
(sin θ/λ)max (Å−1) | 0.639 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.058, 0.175, 1.04 |
No. of reflections | 3712 |
No. of parameters | 279 |
No. of restraints | 23 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.35, −0.16 |
Computer programs: SMART (Bruker, 2001), SAINT (Bruker, 2001), SHELXS97 (Sheldrick, 1997), SHELXL97 (Sheldrick, 1997), PLATON (Spek, 2003).
D—H···A | D—H | H···A | D···A | D—H···A |
C14—H14A···O1i | 0.97 | 2.52 | 3.478 (9) | 171.1 |
N3—H3A···O1i | 0.86 | 2.46 | 3.140 (6) | 136.9 |
Symmetry code: (i) x, −y+1/2, z−1/2. |
Acknowledgements
The author acknowledges the National Basic Research Program of China (grant No. 2004CCA00100) and the National Natural Science Foundation of China (grant No. 20102001).
References
Allen, F. H., Kennard, O., Watson, D. G., Brammer, L., Orpen, A. G. & Taylor, R. (1987). J. Chem. Soc. Perkin Trans. 2, pp. S1–19. CSD CrossRef Web of Science Google Scholar
Bruker (2001). SHELXTL (Version 6.12), SMART (Version 5.628) and SAINT (Version 6.45). Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Chambhare, R. V., Khadse, B. G., Bobde, A. S. & Bahekar, R. H. (2003). Eur. J. Med. Chem. 38, 89–100. Web of Science CrossRef PubMed CAS Google Scholar
Ding, M. W., Xu, S. Z. & Zhao, J. F. (2004). J. Org. Chem. 69, 8366–8371. Web of Science CrossRef PubMed CAS Google Scholar
Janiak, C. (2000). J. Chem. Soc. Dalton Trans. pp. 3885–3896. Web of Science CrossRef Google Scholar
Sheldrick, G. M. (1997). SHELXS97 and SHELXL97. University of Göttingen, Germany. Google Scholar
Spek, A. L. (2003). J. Appl. Cryst. 36, 7–13. Web of Science CrossRef CAS IUCr Journals Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Thienopyrimidine derivatives are of interest as possible antiviral agents, and because of their other biological properties, including antibacterial, antifungal, antiallergic and anti inflammatory activities (Chambhare et al., 2003). We have recently focused on the synthesis of the fused heterocyclic systems containing thienopyrimidine via aza-Wittig reactions at room temperature (Ding et al., 2004). We report herein the structure of one such thienopyrimidine derivative, the title compound, (I).
In the molecule of (I), (Fig. 1) the bond lengths and angles are generally within normal ranges (Allen et al., 1987). When the crystal structure was solved, propyl and butyl groups were found to be disordered.
Rings A (C1—C6), B (S1/C1/C6—C8) and C (N1/N2/C7—C10) are, of course, planar. The three fused rings A, B and C are also co-planar. The maximum deviation from the benzo[4,5]thieno[3,2-e]-pyrimidinone mean plane is 0.027 (3) Å (for atom C7).
In the crystal structure, intermolecular N—H···O and C—H···O hydrogen bonds (Table 1) link the molecules (Fig. 2), in which they may be effective in the stabilization of the structure. Further stability is provided by offset π-π stacking interactions (Janiak, 2000). The adjacent B, C and A, C rings have centroid-centroid distances of 3.96 (1) %A and 3.55 (2) %A, respectively, [symmetry code: -x, -y, 2 - z].