organic compounds
Diethyl 2-tert-butyl-6,9-dibromo-4,11-dioxo-5,10-dihydro-cis-1H,3H,4H,11H-2-azo-3a,4a,10a,11a-tetraazabenz[f]indeno[2,1,7-ija]azulene-11b,11c-dicarboxylate
aKey Laboratory of Pesticides and Chemical Biology of the Ministry of Education, College of Chemistry, Central China Normal University, Wuhan 430079, People's Republic of China
*Correspondence e-mail: qj0312@mails.ccnu.edu.cn
In the title compound, C24H29Br2N5O6, a glycoluril derivative, the 1,4-dibromobenzene ring is fused to the seven-membered ring of the glycoluril unit containing two N atoms. The two five-membered rings in the glycoluril unit are approximately planar and the dihedral angle between them is 69.8 (2)°. The six-membered ring containing three N atoms adopts a chair conformation. The crystal packing is stabilized by an intermolecular non-classical C—H⋯O hydrogen bond and a weak C—H⋯π interaction. Both of the ester groups are found to be disordered over two positions. The occupancies of the disordered positions were refined to 0.73(1):0.27(1) and 0.56(1):0.44(1).
Related literature
For the preparation of the title compound, see: Lai & Yap (1993); Li et al. (2006). For potential applications of the title compound, see: Wu et al. (2002); Rowan et al. (1999); Chakraborty et al. (2002); Lehn (1995); Diederich (1991); Purse & Rebek (2005); Yin et al. (2006). For the crystal structures of similar compounds, see: Chen et al. (2007); Wang et al. (2006).
Experimental
Crystal data
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Data collection
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Refinement
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Data collection: SMART (Bruker, 2001); cell SAINT-Plus (Bruker, 2001); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: PLATON (Spek, 2003); software used to prepare material for publication: PLATON.
Supporting information
https://doi.org/10.1107/S1600536807062472/is2227sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536807062472/is2227Isup2.hkl
The title compound was synthesized according to the procedure of Lai & Yap (1993) and Li et al. (2006). Single crystals suitable for X-ray data collection were obtained by slow evaporation of a chloroform and methaol solution in a ratio of 20:1 at 293 K.
Each diethoxycarbonyl group was treated as disordered over two positions. For the ester group containing O3/O4, the occupation factors of the two sites were refined by using restraint commands of DFIX, SADI and EDAP, giving the final occupancy of 0.73 (1)/0.27 (1) for the major and minor components, respectively. Similarly, the ester group containing O5/O6 was also treated as disorder and the final occupancy were 0.56 (1)/0.44 (1) for the corresponding components, respectively. The final largest residual density peak is located about 1.51 (1) Å from atom H5. Attempted to model the probable disorder or any other solvent molecules failed, which may be caused by the existence of the two heavy atoms, Br1 and Br2, leading to the contamination some positions. The large Rint value is probably due to the poor crystal quality; we tried to selected better crystals for diffraction experiment, but failed. All H atoms bonded to C atoms were located at the geometrical positions with C—H = 0.96 Å (methyl C), 0.97 Å (methylene C) and 0.93Å (aromatic C), and the Uiso(H) values were set k times of Ueq(C), k = 1.5 for methyl H atom and 1.2 for the other H atoms.
Glycoluril derivatives have shown applications in many fields such as polymer cross-linking, explosives, slow-release fertilizers, iodogens stabilisers of organic compounds against photodegradation and reagent in combinatorial chemistry (Wu et al., 2002; Rowan et al., 1999; Chakraborty et al., 2002). Synthetic receptors with molecular cavities have been used as models and play an important role in studying the complex biological systems, such as protein folding, molecular recognition of substrates by enzymes, formation of membranes (Lehn, 1995; Diederich, 1991) and molecular catalysis (Purse & Rebek, 2005; Yin et al., 2006; Li et al., 2006). In addition, the crystal structures of glycoluril derivatives have been studied by our group (Chen et al., 2007; Wang et al., 2006). Herein we report the crystal structures of title compound (Fig. 1).
The dihedral angel between two five-membered rings in glycoluril unit is 69.8 (2)°. The six-membered ring of N2/C15/N3/C20/N5/C19 displays a chair conformation. By a combination of a non-classical H-bonding, e.g. C7—H7A···O3i [symmetry code: (i) 5/2 - x, 1/2 + y, 1/2 - z] and a weak C—H···π interaction (Table 1; Cg1 is the centroid of the benzene C1–C6 ring), molecules are joined together forming a one-dimensional chain running parallel to the b axis (Fig. 2).
For the preparation of the title compound, see: Lai & Yap (1993); Li et al. (2006). For potential applications of the title compound, see: Wu et al. (2002); Rowan et al. (1999); Chakraborty et al. (2002); Lehn (1995); Diederich (1991); Purse & Rebek (2005); Yin et al. (2006). For the crystal structures of similar compounds, see: Chen et al. (2007); Wang et al. (2006).
Data collection: SMART (Bruker, 2001); cell
SAINT-Plus (Bruker, 2001); data reduction: SAINT-Plus (Bruker, 2001); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: PLATON (Spek, 2003); software used to prepare material for publication: PLATON (Spek, 2003).C24H29Br2N5O6 | F(000) = 1304 |
Mr = 643.34 | Dx = 1.558 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 2626 reflections |
a = 10.4151 (8) Å | θ = 2.2–18.8° |
b = 11.3801 (8) Å | µ = 3.00 mm−1 |
c = 23.1649 (17) Å | T = 293 K |
β = 92.692 (1)° | Block, blue |
V = 2742.6 (3) Å3 | 0.10 × 0.06 × 0.04 mm |
Z = 4 |
Bruker SMART APEX CCD area-detector diffractometer | 2185 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.120 |
Graphite monochromator | θmax = 25.0°, θmin = 1.8° |
φ and ω scans | h = −12→12 |
18064 measured reflections | k = −13→11 |
4828 independent reflections | l = −27→25 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.080 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.232 | H-atom parameters constrained |
S = 0.88 | w = 1/[σ2(Fo2) + (0.1377P)2] where P = (Fo2 + 2Fc2)/3 |
4828 reflections | (Δ/σ)max < 0.001 |
415 parameters | Δρmax = 1.91 e Å−3 |
22 restraints | Δρmin = −0.53 e Å−3 |
C24H29Br2N5O6 | V = 2742.6 (3) Å3 |
Mr = 643.34 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 10.4151 (8) Å | µ = 3.00 mm−1 |
b = 11.3801 (8) Å | T = 293 K |
c = 23.1649 (17) Å | 0.10 × 0.06 × 0.04 mm |
β = 92.692 (1)° |
Bruker SMART APEX CCD area-detector diffractometer | 2185 reflections with I > 2σ(I) |
18064 measured reflections | Rint = 0.120 |
4828 independent reflections |
R[F2 > 2σ(F2)] = 0.080 | 22 restraints |
wR(F2) = 0.232 | H-atom parameters constrained |
S = 0.88 | Δρmax = 1.91 e Å−3 |
4828 reflections | Δρmin = −0.53 e Å−3 |
415 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
Br1 | 0.87255 (10) | 1.26953 (9) | 0.14865 (5) | 0.0940 (5) | |
Br2 | 1.27715 (11) | 0.96144 (11) | 0.00489 (5) | 0.1022 (5) | |
C1 | 1.0559 (7) | 1.0823 (7) | 0.1398 (3) | 0.0510 (19) | |
C2 | 1.1426 (7) | 1.0152 (7) | 0.1078 (4) | 0.056 (2) | |
C3 | 1.1591 (8) | 1.0401 (8) | 0.0494 (4) | 0.070 (3) | |
C4 | 1.0897 (10) | 1.1305 (9) | 0.0219 (4) | 0.077 (3) | |
H4 | 1.1011 | 1.1472 | −0.0168 | 0.093* | |
C5 | 1.0050 (9) | 1.1941 (8) | 0.0523 (5) | 0.078 (3) | |
H5 | 0.9577 | 1.2537 | 0.0338 | 0.093* | |
C6 | 0.9880 (7) | 1.1713 (7) | 0.1106 (4) | 0.062 (2) | |
C7 | 1.0491 (7) | 1.0630 (6) | 0.2031 (3) | 0.0517 (19) | |
H7A | 1.1346 | 1.0725 | 0.2209 | 0.062* | |
H7B | 0.9948 | 1.1234 | 0.2187 | 0.062* | |
C8 | 1.2156 (7) | 0.9152 (8) | 0.1365 (4) | 0.063 (2) | |
H8A | 1.2672 | 0.8770 | 0.1082 | 0.075* | |
H8B | 1.2738 | 0.9466 | 0.1666 | 0.075* | |
C9 | 0.8717 (7) | 0.9214 (6) | 0.2150 (3) | 0.0457 (18) | |
C10 | 1.0663 (7) | 0.7450 (6) | 0.1288 (4) | 0.051 (2) | |
C11 | 1.0791 (7) | 0.8450 (6) | 0.2169 (3) | 0.0475 (18) | |
C12 | 1.1894 (8) | 0.8394 (8) | 0.2628 (4) | 0.068 (2) | |
C13 | 1.2920 (14) | 0.9101 (19) | 0.3468 (8) | 0.074 (5) | 0.73 (3) |
H13A | 1.3671 | 0.9391 | 0.3280 | 0.089* | 0.73 (3) |
H13B | 1.3097 | 0.8309 | 0.3605 | 0.089* | 0.73 (3) |
C14 | 1.261 (2) | 0.991 (2) | 0.3979 (8) | 0.107 (8) | 0.73 (3) |
H14A | 1.2380 | 1.0674 | 0.3835 | 0.160* | 0.73 (3) |
H14B | 1.3347 | 0.9965 | 0.4241 | 0.160* | 0.73 (3) |
H14C | 1.1901 | 0.9582 | 0.4177 | 0.160* | 0.73 (3) |
O3 | 1.2862 (18) | 0.7808 (19) | 0.2575 (12) | 0.124 (8) | 0.73 (3) |
O4 | 1.1805 (17) | 0.9107 (18) | 0.3066 (7) | 0.066 (6) | 0.73 (3) |
C13' | 1.281 (4) | 0.976 (5) | 0.3379 (12) | 0.065 (13) | 0.27 (3) |
H13C | 1.2783 | 1.0614 | 0.3412 | 0.077* | 0.27 (3) |
H13D | 1.3659 | 0.9549 | 0.3254 | 0.077* | 0.27 (3) |
C14' | 1.260 (4) | 0.921 (4) | 0.3968 (16) | 0.061 (13) | 0.27 (3) |
H14D | 1.2240 | 0.8438 | 0.3914 | 0.092* | 0.27 (3) |
H14E | 1.2020 | 0.9689 | 0.4176 | 0.092* | 0.27 (3) |
H14F | 1.3407 | 0.9152 | 0.4185 | 0.092* | 0.27 (3) |
O3' | 1.240 (4) | 0.745 (2) | 0.274 (2) | 0.070 (11) | 0.27 (3) |
O4' | 1.185 (6) | 0.938 (3) | 0.2953 (17) | 0.067 (16) | 0.27 (3) |
C15 | 0.9798 (7) | 0.7420 (6) | 0.2205 (3) | 0.0448 (18) | |
C16 | 1.0060 (8) | 0.6547 (6) | 0.2707 (3) | 0.058 (2) | |
C19 | 0.7462 (7) | 0.7404 (7) | 0.2009 (3) | 0.054 (2) | |
H19A | 0.6720 | 0.7920 | 0.2010 | 0.065* | |
H19B | 0.7292 | 0.6727 | 0.2248 | 0.065* | |
C20 | 0.8754 (7) | 0.6202 (7) | 0.1429 (3) | 0.058 (2) | |
H20A | 0.8892 | 0.5907 | 0.1044 | 0.070* | |
H20B | 0.8573 | 0.5539 | 0.1676 | 0.070* | |
C21 | 0.6505 (8) | 0.6557 (8) | 0.1086 (4) | 0.070 (2) | |
C22 | 0.5477 (10) | 0.7499 (11) | 0.1080 (6) | 0.124 (5) | |
H22A | 0.5338 | 0.7744 | 0.1468 | 0.186* | |
H22B | 0.4691 | 0.7190 | 0.0907 | 0.186* | |
H22C | 0.5749 | 0.8160 | 0.0859 | 0.186* | |
C23 | 0.6001 (10) | 0.5414 (9) | 0.1369 (5) | 0.106 (4) | |
H23A | 0.6650 | 0.4816 | 0.1361 | 0.159* | |
H23B | 0.5241 | 0.5149 | 0.1157 | 0.159* | |
H23C | 0.5802 | 0.5572 | 0.1762 | 0.159* | |
C24 | 0.6860 (12) | 0.6247 (13) | 0.0476 (4) | 0.127 (5) | |
H24A | 0.7421 | 0.6840 | 0.0334 | 0.191* | |
H24B | 0.6094 | 0.6206 | 0.0229 | 0.191* | |
H24C | 0.7288 | 0.5500 | 0.0478 | 0.191* | |
N1 | 0.9991 (5) | 0.9471 (5) | 0.2194 (2) | 0.0448 (14) | |
N2 | 0.8576 (5) | 0.8014 (5) | 0.2239 (3) | 0.0495 (15) | |
N3 | 0.9906 (6) | 0.6825 (5) | 0.1656 (2) | 0.0486 (15) | |
N4 | 1.1327 (5) | 0.8276 (5) | 0.1619 (3) | 0.0484 (15) | |
N5 | 0.7677 (6) | 0.7018 (5) | 0.1411 (3) | 0.0511 (16) | |
O1 | 0.7850 (5) | 0.9907 (4) | 0.2079 (2) | 0.0591 (14) | |
O2 | 1.0786 (6) | 0.7265 (5) | 0.0781 (3) | 0.0711 (16) | |
O5 | 1.030 (3) | 0.5476 (9) | 0.2619 (7) | 0.064 (5) | 0.57 (4) |
O6 | 0.986 (2) | 0.7074 (12) | 0.3223 (4) | 0.042 (4) | 0.57 (4) |
C17 | 1.006 (4) | 0.641 (2) | 0.3743 (5) | 0.070 (8) | 0.57 (4) |
H17A | 1.0955 | 0.6186 | 0.3793 | 0.084* | 0.57 (4) |
H17B | 0.9547 | 0.5695 | 0.3717 | 0.084* | 0.57 (4) |
C18 | 0.967 (5) | 0.714 (4) | 0.4262 (7) | 0.134 (19) | 0.57 (4) |
H18A | 1.0018 | 0.7915 | 0.4235 | 0.201* | 0.57 (4) |
H18B | 0.9995 | 0.6772 | 0.4612 | 0.201* | 0.57 (4) |
H18C | 0.8748 | 0.7181 | 0.4264 | 0.201* | 0.57 (4) |
O6' | 0.937 (2) | 0.689 (2) | 0.3156 (8) | 0.044 (6) | 0.43 (4) |
O5' | 1.095 (3) | 0.581 (3) | 0.2663 (10) | 0.086 (9) | 0.43 (4) |
C17' | 0.963 (4) | 0.622 (3) | 0.3649 (11) | 0.059 (11) | 0.43 (4) |
H17C | 1.0296 | 0.5654 | 0.3572 | 0.071* | 0.43 (4) |
H17D | 0.8861 | 0.5783 | 0.3739 | 0.071* | 0.43 (4) |
C18' | 1.006 (4) | 0.697 (3) | 0.4175 (12) | 0.058 (9) | 0.43 (4) |
H18D | 1.0815 | 0.7407 | 0.4088 | 0.086* | 0.43 (4) |
H18E | 1.0249 | 0.6468 | 0.4501 | 0.086* | 0.43 (4) |
H18F | 0.9384 | 0.7505 | 0.4264 | 0.086* | 0.43 (4) |
U11 | U22 | U33 | U12 | U13 | U23 | |
Br1 | 0.0846 (8) | 0.0613 (6) | 0.1359 (11) | 0.0207 (5) | 0.0027 (6) | 0.0263 (6) |
Br2 | 0.1050 (9) | 0.1171 (10) | 0.0874 (8) | −0.0272 (7) | 0.0366 (6) | −0.0131 (6) |
C1 | 0.044 (4) | 0.050 (5) | 0.058 (5) | −0.010 (4) | −0.004 (4) | 0.004 (4) |
C2 | 0.048 (4) | 0.055 (5) | 0.063 (6) | −0.018 (4) | −0.005 (4) | 0.007 (4) |
C3 | 0.068 (6) | 0.078 (6) | 0.063 (6) | −0.042 (5) | −0.012 (5) | 0.015 (5) |
C4 | 0.098 (8) | 0.079 (7) | 0.054 (6) | −0.016 (6) | −0.008 (5) | 0.017 (5) |
C5 | 0.080 (7) | 0.055 (6) | 0.095 (8) | −0.016 (5) | −0.037 (6) | 0.029 (6) |
C6 | 0.057 (5) | 0.056 (5) | 0.073 (6) | −0.007 (4) | −0.014 (4) | 0.016 (5) |
C7 | 0.052 (5) | 0.038 (4) | 0.065 (5) | −0.004 (3) | −0.006 (4) | −0.001 (4) |
C8 | 0.046 (5) | 0.077 (6) | 0.066 (5) | 0.001 (4) | 0.010 (4) | 0.009 (5) |
C9 | 0.052 (5) | 0.040 (5) | 0.044 (5) | 0.008 (4) | −0.003 (4) | 0.003 (3) |
C10 | 0.055 (5) | 0.041 (5) | 0.055 (6) | 0.014 (4) | −0.002 (4) | 0.000 (4) |
C11 | 0.051 (4) | 0.038 (4) | 0.053 (5) | 0.001 (3) | −0.012 (4) | 0.004 (4) |
C12 | 0.058 (6) | 0.067 (7) | 0.078 (8) | 0.006 (5) | −0.026 (5) | 0.007 (6) |
C13 | 0.066 (9) | 0.087 (13) | 0.066 (12) | 0.006 (9) | −0.021 (8) | 0.019 (11) |
C14 | 0.112 (14) | 0.102 (18) | 0.104 (17) | −0.035 (15) | −0.031 (11) | −0.003 (13) |
O3 | 0.094 (12) | 0.121 (13) | 0.15 (2) | 0.043 (11) | −0.054 (11) | −0.037 (11) |
O4 | 0.056 (9) | 0.090 (9) | 0.050 (7) | −0.002 (8) | −0.023 (7) | 0.001 (9) |
C13' | 0.07 (2) | 0.06 (3) | 0.07 (3) | 0.00 (2) | 0.00 (2) | 0.00 (2) |
C14' | 0.06 (2) | 0.07 (3) | 0.05 (3) | 0.00 (2) | −0.001 (18) | −0.01 (2) |
O3' | 0.06 (2) | 0.07 (2) | 0.08 (2) | 0.010 (16) | −0.020 (16) | 0.016 (15) |
O4' | 0.06 (2) | 0.08 (3) | 0.06 (3) | −0.022 (17) | 0.009 (16) | 0.01 (2) |
C15 | 0.057 (5) | 0.033 (4) | 0.044 (4) | 0.005 (3) | −0.005 (4) | 0.006 (3) |
C16 | 0.071 (6) | 0.064 (6) | 0.037 (5) | 0.012 (5) | −0.014 (4) | 0.015 (4) |
C19 | 0.050 (5) | 0.053 (5) | 0.061 (5) | 0.000 (4) | 0.006 (4) | 0.004 (4) |
C20 | 0.078 (6) | 0.051 (5) | 0.046 (5) | −0.005 (4) | 0.001 (4) | −0.003 (4) |
C21 | 0.076 (6) | 0.071 (6) | 0.062 (6) | −0.019 (5) | −0.013 (5) | 0.008 (5) |
C22 | 0.089 (8) | 0.112 (9) | 0.163 (12) | 0.003 (7) | −0.075 (8) | 0.024 (8) |
C23 | 0.097 (8) | 0.103 (8) | 0.115 (8) | −0.063 (6) | −0.026 (6) | 0.012 (7) |
C24 | 0.130 (10) | 0.180 (13) | 0.069 (8) | −0.028 (9) | −0.025 (7) | −0.005 (8) |
N1 | 0.043 (4) | 0.041 (4) | 0.049 (4) | 0.007 (3) | −0.005 (3) | 0.002 (3) |
N2 | 0.041 (3) | 0.053 (4) | 0.054 (4) | 0.003 (3) | −0.003 (3) | 0.002 (3) |
N3 | 0.065 (4) | 0.043 (3) | 0.039 (3) | 0.000 (3) | 0.001 (3) | 0.004 (3) |
N4 | 0.048 (4) | 0.048 (4) | 0.050 (4) | 0.004 (3) | 0.006 (3) | −0.004 (3) |
N5 | 0.056 (4) | 0.038 (4) | 0.058 (4) | −0.002 (3) | −0.009 (3) | 0.007 (3) |
O1 | 0.054 (3) | 0.041 (3) | 0.082 (4) | 0.018 (3) | −0.006 (3) | 0.004 (3) |
O2 | 0.086 (4) | 0.081 (4) | 0.047 (4) | 0.016 (3) | 0.011 (3) | 0.002 (3) |
O5 | 0.082 (13) | 0.040 (7) | 0.070 (8) | 0.018 (6) | 0.008 (8) | 0.017 (6) |
O6 | 0.035 (9) | 0.050 (7) | 0.040 (7) | −0.003 (6) | −0.011 (5) | 0.009 (5) |
C17 | 0.08 (2) | 0.071 (16) | 0.058 (16) | 0.005 (14) | −0.015 (12) | 0.016 (14) |
C18 | 0.14 (4) | 0.17 (4) | 0.09 (2) | 0.02 (2) | 0.013 (19) | 0.03 (2) |
O6' | 0.042 (11) | 0.054 (10) | 0.034 (9) | −0.006 (9) | −0.020 (8) | 0.013 (7) |
O5' | 0.096 (17) | 0.089 (16) | 0.073 (12) | 0.027 (16) | −0.017 (13) | 0.027 (11) |
C17' | 0.07 (2) | 0.058 (16) | 0.054 (17) | −0.017 (14) | −0.011 (13) | 0.004 (13) |
C18' | 0.058 (17) | 0.058 (17) | 0.06 (2) | 0.000 (13) | 0.003 (13) | 0.000 (15) |
Br1—C6 | 1.890 (9) | C14'—H14E | 0.9600 |
Br2—C3 | 1.869 (10) | C14'—H14F | 0.9600 |
C1—C6 | 1.392 (11) | C15—N2 | 1.446 (9) |
C1—C2 | 1.418 (11) | C15—N3 | 1.451 (9) |
C1—C7 | 1.488 (10) | C15—C16 | 1.544 (9) |
C2—C3 | 1.402 (11) | C16—O5' | 1.260 (8) |
C2—C8 | 1.505 (11) | C16—O5 | 1.263 (8) |
C3—C4 | 1.394 (13) | C16—O6' | 1.350 (9) |
C4—C5 | 1.362 (13) | C16—O6 | 1.361 (8) |
C4—H4 | 0.9300 | C19—N2 | 1.434 (9) |
C5—C6 | 1.395 (13) | C19—N5 | 1.480 (9) |
C5—H5 | 0.9300 | C19—H19A | 0.9700 |
C7—N1 | 1.475 (9) | C19—H19B | 0.9700 |
C7—H7A | 0.9700 | C20—N5 | 1.455 (9) |
C7—H7B | 0.9700 | C20—N3 | 1.470 (9) |
C8—N4 | 1.460 (9) | C20—H20A | 0.9700 |
C8—H8A | 0.9700 | C20—H20B | 0.9700 |
C8—H8B | 0.9700 | C21—N5 | 1.498 (10) |
C9—O1 | 1.204 (8) | C21—C22 | 1.515 (14) |
C9—N1 | 1.358 (9) | C21—C24 | 1.520 (13) |
C9—N2 | 1.391 (9) | C21—C23 | 1.559 (12) |
C10—O2 | 1.205 (9) | C22—H22A | 0.9600 |
C10—N4 | 1.378 (9) | C22—H22B | 0.9600 |
C10—N3 | 1.385 (10) | C22—H22C | 0.9600 |
C11—N4 | 1.429 (9) | C23—H23A | 0.9600 |
C11—N1 | 1.432 (8) | C23—H23B | 0.9600 |
C11—C12 | 1.530 (11) | C23—H23C | 0.9600 |
C11—C15 | 1.569 (10) | C24—H24A | 0.9600 |
C12—O3' | 1.219 (14) | C24—H24B | 0.9600 |
C12—O3 | 1.220 (12) | C24—H24C | 0.9600 |
C12—O4 | 1.305 (9) | O6—C17 | 1.429 (9) |
C12—O4' | 1.352 (11) | C17—C18 | 1.531 (10) |
C13—O4 | 1.455 (10) | C17—H17A | 0.9700 |
C13—C14 | 1.542 (10) | C17—H17B | 0.9700 |
C13—H13A | 0.9700 | C18—H18A | 0.9600 |
C13—H13B | 0.9700 | C18—H18B | 0.9600 |
C14—H14A | 0.9600 | C18—H18C | 0.9600 |
C14—H14B | 0.9600 | O6'—C17' | 1.389 (10) |
C14—H14C | 0.9600 | C17'—C18' | 1.540 (10) |
C13'—O4' | 1.44 (5) | C17'—H17C | 0.9700 |
C13'—C14' | 1.531 (11) | C17'—H17D | 0.9700 |
C13'—H13C | 0.9700 | C18'—H18D | 0.9600 |
C13'—H13D | 0.9700 | C18'—H18E | 0.9600 |
C14'—H14D | 0.9600 | C18'—H18F | 0.9600 |
C6—C1—C2 | 117.4 (7) | O5'—C16—C15 | 118.2 (13) |
C6—C1—C7 | 122.6 (7) | O5—C16—C15 | 121.9 (9) |
C2—C1—C7 | 119.7 (7) | O6'—C16—C15 | 108.2 (10) |
C3—C2—C1 | 120.3 (8) | O6—C16—C15 | 110.4 (8) |
C3—C2—C8 | 119.8 (8) | N2—C19—N5 | 109.6 (6) |
C1—C2—C8 | 119.9 (7) | N2—C19—H19A | 109.7 |
C4—C3—C2 | 120.4 (9) | N5—C19—H19A | 109.7 |
C4—C3—Br2 | 116.2 (7) | N2—C19—H19B | 109.7 |
C2—C3—Br2 | 123.3 (7) | N5—C19—H19B | 109.7 |
C5—C4—C3 | 119.4 (9) | H19A—C19—H19B | 108.2 |
C5—C4—H4 | 120.3 | N5—C20—N3 | 108.5 (6) |
C3—C4—H4 | 120.3 | N5—C20—H20A | 110.0 |
C4—C5—C6 | 121.0 (8) | N3—C20—H20A | 110.0 |
C4—C5—H5 | 119.5 | N5—C20—H20B | 110.0 |
C6—C5—H5 | 119.5 | N3—C20—H20B | 110.0 |
C1—C6—C5 | 121.4 (8) | H20A—C20—H20B | 108.4 |
C1—C6—Br1 | 121.6 (7) | N5—C21—C22 | 108.5 (8) |
C5—C6—Br1 | 117.0 (7) | N5—C21—C24 | 108.7 (7) |
N1—C7—C1 | 114.8 (6) | C22—C21—C24 | 110.9 (9) |
N1—C7—H7A | 108.6 | N5—C21—C23 | 111.4 (7) |
C1—C7—H7A | 108.6 | C22—C21—C23 | 110.1 (9) |
N1—C7—H7B | 108.6 | C24—C21—C23 | 107.3 (9) |
C1—C7—H7B | 108.6 | C21—C22—H22A | 109.5 |
H7A—C7—H7B | 107.6 | C21—C22—H22B | 109.5 |
N4—C8—C2 | 113.4 (6) | H22A—C22—H22B | 109.5 |
N4—C8—H8A | 108.9 | C21—C22—H22C | 109.5 |
C2—C8—H8A | 108.9 | H22A—C22—H22C | 109.5 |
N4—C8—H8B | 108.9 | H22B—C22—H22C | 109.5 |
C2—C8—H8B | 108.9 | C21—C23—H23A | 109.5 |
H8A—C8—H8B | 107.7 | C21—C23—H23B | 109.5 |
O1—C9—N1 | 126.4 (7) | H23A—C23—H23B | 109.5 |
O1—C9—N2 | 125.5 (7) | C21—C23—H23C | 109.5 |
N1—C9—N2 | 108.0 (6) | H23A—C23—H23C | 109.5 |
O2—C10—N4 | 126.0 (8) | H23B—C23—H23C | 109.5 |
O2—C10—N3 | 126.8 (7) | C21—C24—H24A | 109.5 |
N4—C10—N3 | 107.1 (7) | C21—C24—H24B | 109.5 |
N4—C11—N1 | 113.7 (6) | H24A—C24—H24B | 109.5 |
N4—C11—C12 | 107.6 (6) | C21—C24—H24C | 109.5 |
N1—C11—C12 | 115.1 (6) | H24A—C24—H24C | 109.5 |
N4—C11—C15 | 103.3 (6) | H24B—C24—H24C | 109.5 |
N1—C11—C15 | 102.6 (5) | C9—N1—C11 | 113.0 (6) |
C12—C11—C15 | 114.0 (6) | C9—N1—C7 | 121.9 (6) |
O3—C12—O4 | 120.5 (14) | C11—N1—C7 | 120.1 (6) |
O3'—C12—O4' | 130 (3) | C9—N2—C19 | 120.6 (6) |
O3'—C12—C11 | 119 (3) | C9—N2—C15 | 110.6 (6) |
O3—C12—C11 | 123.4 (13) | C19—N2—C15 | 116.9 (6) |
O4—C12—C11 | 115.8 (9) | C10—N3—C15 | 111.7 (6) |
O4'—C12—C11 | 107.9 (19) | C10—N3—C20 | 120.4 (6) |
O4—C13—C14 | 107.3 (9) | C15—N3—C20 | 116.3 (6) |
O4—C13—H13A | 110.3 | C10—N4—C11 | 112.6 (6) |
C14—C13—H13A | 110.3 | C10—N4—C8 | 122.2 (7) |
O4—C13—H13B | 110.3 | C11—N4—C8 | 121.8 (6) |
C14—C13—H13B | 110.3 | C20—N5—C19 | 108.3 (6) |
H13A—C13—H13B | 108.5 | C20—N5—C21 | 113.5 (6) |
C12—O4—C13 | 114.3 (12) | C19—N5—C21 | 114.7 (6) |
O4'—C13'—C14' | 111 (3) | C16—O6—C17 | 119.0 (10) |
O4'—C13'—H13C | 109.5 | O6—C17—C18 | 110.0 (10) |
C14'—C13'—H13C | 109.5 | O6—C17—H17A | 109.7 |
O4'—C13'—H13D | 109.5 | C18—C17—H17A | 109.7 |
C14'—C13'—H13D | 109.5 | O6—C17—H17B | 109.7 |
H13C—C13'—H13D | 108.0 | C18—C17—H17B | 109.7 |
C13'—C14'—H14D | 109.5 | H17A—C17—H17B | 108.2 |
C13'—C14'—H14E | 109.5 | C16—O6'—C17' | 112.5 (19) |
H14D—C14'—H14E | 109.5 | O6'—C17'—C18' | 112.5 (11) |
C13'—C14'—H14F | 109.5 | O6'—C17'—H17C | 109.1 |
H14D—C14'—H14F | 109.5 | C18'—C17'—H17C | 109.1 |
H14E—C14'—H14F | 109.5 | O6'—C17'—H17D | 109.1 |
C12—O4'—C13' | 126 (4) | C18'—C17'—H17D | 109.1 |
N2—C15—N3 | 111.7 (6) | H17C—C17'—H17D | 107.8 |
N2—C15—C16 | 112.6 (6) | C17'—C18'—H18D | 109.5 |
N3—C15—C16 | 110.0 (5) | C17'—C18'—H18E | 109.5 |
N2—C15—C11 | 103.7 (5) | H18D—C18'—H18E | 109.5 |
N3—C15—C11 | 102.9 (5) | C17'—C18'—H18F | 109.5 |
C16—C15—C11 | 115.4 (6) | H18D—C18'—H18F | 109.5 |
O5'—C16—O6' | 132.6 (12) | H18E—C18'—H18F | 109.5 |
O5—C16—O6 | 127.4 (9) | ||
C6—C1—C2—C3 | 0.8 (10) | O1—C9—N1—C7 | −14.0 (11) |
C7—C1—C2—C3 | −173.8 (6) | N2—C9—N1—C7 | 169.9 (6) |
C6—C1—C2—C8 | −178.1 (7) | N4—C11—N1—C9 | 101.4 (7) |
C7—C1—C2—C8 | 7.4 (10) | C12—C11—N1—C9 | −133.8 (7) |
C1—C2—C3—C4 | −0.5 (11) | C15—C11—N1—C9 | −9.5 (7) |
C8—C2—C3—C4 | 178.4 (7) | N4—C11—N1—C7 | −54.1 (8) |
C1—C2—C3—Br2 | 176.8 (5) | C12—C11—N1—C7 | 70.7 (9) |
C8—C2—C3—Br2 | −4.3 (10) | C15—C11—N1—C7 | −165.0 (6) |
C2—C3—C4—C5 | −0.4 (13) | C1—C7—N1—C9 | −77.0 (8) |
Br2—C3—C4—C5 | −177.9 (7) | C1—C7—N1—C11 | 76.3 (8) |
C3—C4—C5—C6 | 0.9 (13) | O1—C9—N2—C19 | 28.2 (11) |
C2—C1—C6—C5 | −0.3 (11) | N1—C9—N2—C19 | −155.8 (6) |
C7—C1—C6—C5 | 174.1 (7) | O1—C9—N2—C15 | 169.9 (7) |
C2—C1—C6—Br1 | −178.4 (5) | N1—C9—N2—C15 | −14.1 (8) |
C7—C1—C6—Br1 | −4.0 (10) | N5—C19—N2—C9 | 87.2 (8) |
C4—C5—C6—C1 | −0.6 (13) | N5—C19—N2—C15 | −52.3 (8) |
C4—C5—C6—Br1 | 177.7 (7) | N3—C15—N2—C9 | −102.2 (7) |
C6—C1—C7—N1 | 119.2 (7) | C16—C15—N2—C9 | 133.3 (6) |
C2—C1—C7—N1 | −66.5 (9) | C11—C15—N2—C9 | 7.9 (7) |
C3—C2—C8—N4 | −122.8 (7) | N3—C15—N2—C19 | 41.0 (8) |
C1—C2—C8—N4 | 56.1 (10) | C16—C15—N2—C19 | −83.5 (8) |
N4—C11—C12—O3' | −71 (2) | C11—C15—N2—C19 | 151.1 (6) |
N1—C11—C12—O3' | 161 (2) | O2—C10—N3—C15 | −169.2 (7) |
C15—C11—C12—O3' | 43 (3) | N4—C10—N3—C15 | 15.2 (8) |
N4—C11—C12—O3 | −30 (2) | O2—C10—N3—C20 | −27.3 (11) |
N1—C11—C12—O3 | −157.6 (19) | N4—C10—N3—C20 | 157.1 (6) |
C15—C11—C12—O3 | 84 (2) | N2—C15—N3—C10 | 102.2 (7) |
N4—C11—C12—O4 | 143.8 (16) | C16—C15—N3—C10 | −131.8 (6) |
N1—C11—C12—O4 | 15.8 (18) | C11—C15—N3—C10 | −8.4 (7) |
C15—C11—C12—O4 | −102.3 (16) | N2—C15—N3—C20 | −41.4 (8) |
N4—C11—C12—O4' | 127 (3) | C16—C15—N3—C20 | 84.5 (8) |
N1—C11—C12—O4' | −1 (3) | C11—C15—N3—C20 | −152.0 (6) |
C15—C11—C12—O4' | −119 (3) | N5—C20—N3—C10 | −86.7 (8) |
O3'—C12—O4—C13 | 39 (3) | N5—C20—N3—C15 | 53.6 (8) |
O3—C12—O4—C13 | −1 (3) | O2—C10—N4—C11 | 168.1 (7) |
O4'—C12—O4—C13 | −109 (11) | N3—C10—N4—C11 | −16.2 (8) |
C11—C12—O4—C13 | −175.0 (15) | O2—C10—N4—C8 | 8.7 (11) |
C14—C13—O4—C12 | −175 (3) | N3—C10—N4—C8 | −175.7 (6) |
O3'—C12—O4'—C13' | 30 (8) | N1—C11—N4—C10 | −99.8 (7) |
O3—C12—O4'—C13' | −14 (7) | C12—C11—N4—C10 | 131.5 (6) |
O4—C12—O4'—C13' | 70 (7) | C15—C11—N4—C10 | 10.6 (7) |
C11—C12—O4'—C13' | −170 (4) | N1—C11—N4—C8 | 59.7 (8) |
C14'—C13'—O4'—C12 | −87 (8) | C12—C11—N4—C8 | −69.0 (8) |
N4—C11—C15—N2 | −117.7 (6) | C15—C11—N4—C8 | 170.1 (6) |
N1—C11—C15—N2 | 0.7 (7) | C2—C8—N4—C10 | 77.2 (9) |
C12—C11—C15—N2 | 125.8 (7) | C2—C8—N4—C11 | −80.3 (9) |
N4—C11—C15—N3 | −1.2 (6) | N3—C20—N5—C19 | −62.2 (7) |
N1—C11—C15—N3 | 117.2 (6) | N3—C20—N5—C21 | 169.2 (6) |
C12—C11—C15—N3 | −117.6 (7) | N2—C19—N5—C20 | 62.2 (7) |
N4—C11—C15—C16 | 118.6 (6) | N2—C19—N5—C21 | −169.8 (6) |
N1—C11—C15—C16 | −122.9 (6) | C22—C21—N5—C20 | −177.9 (8) |
C12—C11—C15—C16 | 2.2 (9) | C24—C21—N5—C20 | −57.2 (10) |
N2—C15—C16—O5' | 166 (3) | C23—C21—N5—C20 | 60.8 (10) |
N3—C15—C16—O5' | 40 (3) | C22—C21—N5—C19 | 56.9 (9) |
C11—C15—C16—O5' | −76 (3) | C24—C21—N5—C19 | 177.6 (8) |
N2—C15—C16—O5 | 123.9 (17) | C23—C21—N5—C19 | −64.4 (10) |
N3—C15—C16—O5 | −1.5 (19) | O5'—C16—O6—C17 | −36 (3) |
C11—C15—C16—O5 | −117.3 (18) | O5—C16—O6—C17 | 7 (2) |
N2—C15—C16—O6' | −24.2 (17) | O6'—C16—O6—C17 | 91 (4) |
N3—C15—C16—O6' | −149.6 (16) | C15—C16—O6—C17 | −180.0 (17) |
C11—C15—C16—O6' | 94.6 (16) | C16—O6—C17—C18 | −175 (4) |
N2—C15—C16—O6 | −49.9 (14) | O5'—C16—O6'—C17' | −6 (3) |
N3—C15—C16—O6 | −175.3 (13) | O5—C16—O6'—C17' | 37 (2) |
C11—C15—C16—O6 | 68.9 (14) | O6—C16—O6'—C17' | −75 (3) |
O1—C9—N1—C11 | −169.0 (7) | C15—C16—O6'—C17' | −174.6 (14) |
N2—C9—N1—C11 | 14.9 (8) | C16—O6'—C17'—C18' | 124 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
C8—H8A···Br2 | 0.97 | 2.59 | 3.190 (8) | 120 |
C7—H7B···Br1 | 0.97 | 2.61 | 3.206 (7) | 120 |
C7—H7A···O3i | 0.97 | 2.55 | 3.125 (17) | 118 |
C14—H14C···Cg1ii | 0.97 | 2.97 | 3.89 (4) | 160 |
Symmetry codes: (i) −x+5/2, y+1/2, −z+1/2; (ii) −x+5/2, y−1/2, −z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C24H29Br2N5O6 |
Mr | 643.34 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 293 |
a, b, c (Å) | 10.4151 (8), 11.3801 (8), 23.1649 (17) |
β (°) | 92.692 (1) |
V (Å3) | 2742.6 (3) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 3.00 |
Crystal size (mm) | 0.10 × 0.06 × 0.04 |
Data collection | |
Diffractometer | Bruker SMART APEX CCD area-detector |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 18064, 4828, 2185 |
Rint | 0.120 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.080, 0.232, 0.88 |
No. of reflections | 4828 |
No. of parameters | 415 |
No. of restraints | 22 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 1.91, −0.53 |
Computer programs: SMART (Bruker, 2001), SAINT-Plus (Bruker, 2001), SHELXS97 (Sheldrick, 1997), SHELXL97 (Sheldrick, 1997), PLATON (Spek, 2003).
D—H···A | D—H | H···A | D···A | D—H···A |
C8—H8A···Br2 | 0.97 | 2.59 | 3.190 (8) | 120.4 |
C7—H7B···Br1 | 0.97 | 2.61 | 3.206 (7) | 119.7 |
C7—H7A···O3i | 0.97 | 2.55 | 3.125 (17) | 118.0 |
C14—H14C···Cg1ii | 0.97 | 2.97 | 3.89 (4) | 160 |
Symmetry codes: (i) −x+5/2, y+1/2, −z+1/2; (ii) −x+5/2, y−1/2, −z+1/2. |
Acknowledgements
The authors thank Dr Xiang-Gao Meng for the X-ray data collection.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Glycoluril derivatives have shown applications in many fields such as polymer cross-linking, explosives, slow-release fertilizers, iodogens stabilisers of organic compounds against photodegradation and reagent in combinatorial chemistry (Wu et al., 2002; Rowan et al., 1999; Chakraborty et al., 2002). Synthetic receptors with molecular cavities have been used as models and play an important role in studying the complex biological systems, such as protein folding, molecular recognition of substrates by enzymes, formation of membranes (Lehn, 1995; Diederich, 1991) and molecular catalysis (Purse & Rebek, 2005; Yin et al., 2006; Li et al., 2006). In addition, the crystal structures of glycoluril derivatives have been studied by our group (Chen et al., 2007; Wang et al., 2006). Herein we report the crystal structures of title compound (Fig. 1).
The dihedral angel between two five-membered rings in glycoluril unit is 69.8 (2)°. The six-membered ring of N2/C15/N3/C20/N5/C19 displays a chair conformation. By a combination of a non-classical H-bonding, e.g. C7—H7A···O3i [symmetry code: (i) 5/2 - x, 1/2 + y, 1/2 - z] and a weak C—H···π interaction (Table 1; Cg1 is the centroid of the benzene C1–C6 ring), molecules are joined together forming a one-dimensional chain running parallel to the b axis (Fig. 2).