organic compounds
5,10,15,20-Tetrakis(3,5-difluorophenyl)porphyrin
aDepartment of Chemistry, Indian Institute of Technology Madras, Chennai-600 036, India, and bSophisticated Analytical Instrument Facility, Indian Institute of Technology Madras, Chennai-600 036, India
*Correspondence e-mail: pbhyrappa@hotmail.com
The 44H22F8N4, shows an unusual non-planar geometry of the porphyrin ring although the molecule is free of steric crowding around the periphery of the macrocycle. The molecular packing exhibits weak intermolecular hydrogen bonding (C—H⋯F) and C—H⋯π interactions. The molecular symmetry is .
of the title compound, CRelated literature
For the stereochemistry of ); Scheidt & Lee (1987). For a related structure, see: Silvers & Tulinsky (1967). For the preparation of the title compound, see: Tamiaki et al. (2000). For C—H⋯π and C—H⋯F interactions, see: Steiner (2002); Thalladi et al. (1998).
and metalloporphyrins, see: Senge (2000Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2004); cell SAINT-Plus (Bruker, 2004); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEP-32 (Farrugia, 1997) and Mercury (Macrae et al., 2006); software used to prepare material for publication: SHELXL97.
Supporting information
https://doi.org/10.1107/S1600536807062782/si2056sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536807062782/si2056Isup2.hkl
5,10,15,20-tetrakis(3',5'-difluorophenyl)porphyrin, H2T(3',5'-DFP)P was prepared using literature method (Tamiaki et al., 2000). Crystals of H2T(3',5'-DFP)P were grown by vapor diffusion of hexane to the CHCl3 solution of the porphyrin over a period of five days.
H atoms were placed in constrained positions (C—H = 0.93 Å and N—H = 0.86 Å) and refined using riding model with Uiso(H) = 1.2 or 1.5 times Ueq(C). The Friedel pairs have been merged, because the α radiation, so no effects could be observed.
could not be reliably determined. The structure mostly contains C, H, N atoms only and the data was collected with Mo KFree base porphyrin, H2T(3',5'-DFP)P was synthesised using literature method (Tamiaki et al. 2000). The compound (I) crystallizes in a tetragonal β-pyrrole carbon is + - ΔCβ = 0.129 (3) Å. Macrocyclic ring (24-atom core) shows ruffled geometry (Senge, 2000) while the related H2TPP shows nearly planar structure. The opposite nitrogens are situated at 4.082Å and it is shorter than that reported for H2TPP (4.20 Å)(Silvers & Tulinsky, 1967). The 3,5-difluorophenyl groups are nearly planar and oriented perpendicular to the porphyrin ring mean plane with an average dihedral angle of 72.7 (5) °. In adition, the meso<i/>-carbon to aryl carbon, C5-C6 distance is found to be 1.499 (2) Å indicating that the aryl group is not significantly conjugated with the porphyrin π-system. The core hydrogens are disordered and are fixed with 50% occupancy on each N atom of the N4H2 core.
I-4 2d with four molecules in the ORTEP of the compound (I) is shown in Fig. 1. The observed bond lengths of the C20N4 core is similar to the related H2TPP structure (Silvers & Tulinsky, 1967). The molecule shows considerable nonplanar geometry (Fig. 1b) with the extent of distortion of the porphyrin ring atoms is as high as + - 0.343 (4) Å and the average displacement of theMolecular packing diagram of the compound (I) is shown in Fig 2. π interactions (Fig.3). On each face of the porphyrin, there is a pair of symmetry related C-H···π interactions for aryl(C7-H7)···C1(α-pyrrole) with H7···C1 distance of 2.869 Å between the two other adjacent from the neighbouring layer. This H7···C1 distance indicates weak C-H···π interactions (Steiner, 2002). The title compound shows unusual nonplanar geometry of the macrocyclic ring.
ab plane forms the 2-dimensional (C-H···F) hydrogen-bonded framework parallel to (001) plane. Each porphyrin in the layer is surrounded by four other nearest neighbours through weak hydrogen bonding (C3-H3···F1) interactions. A pair of such C-H···F hydrogen bonding is observed with each adjacent porphyrin with a shortest H3···F1 distance of 2.656 Å. Such a long hydrogen bonding distance is expected for weak C-H···F interactions (Thalladi et al., 1998). Furthermore, layers are interconnected via C-H···For the stereochemistry of π and C—H···F interactions, see: Steiner (2002); Thalladi et al. (1998).
and metalloporphyrins, see: Senge (2000); Scheidt & Lee (1987). For a related structure, see: Silvers & Tulinsky (1967). For the preparation of H2T(3',5'-DFP)P, see: Tamiaki et al. (2000). For C—H···Data collection: APEX2 (Bruker, 2004); cell
SAINT-Plus (Bruker, 2004); data reduction: SAINT-Plus (Bruker, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEP-32 (Farrugia, 1997) and Mercury (Macrae et al., 2006); software used to prepare material for publication: SHELXL97 (Sheldrick, 1997).C44H22F8N4 | Dx = 1.514 Mg m−3 |
Mr = 758.66 | Mo Kα radiation, λ = 0.71073 Å |
Tetragonal, I42d | Cell parameters from 5676 reflections |
Hall symbol: I -4 2bw | θ = 2.7–27.4° |
a = 15.426 (5) Å | µ = 0.12 mm−1 |
c = 13.991 (5) Å | T = 233 K |
V = 3329.3 (19) Å3 | Plate, purple |
Z = 4 | 0.30 × 0.20 × 0.20 mm |
F(000) = 1544 |
Bruker APEXII CCD area-detector diffractometer | 1145 independent reflections |
Radiation source: fine-focus sealed tube | 1049 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.041 |
ω and φ scan | θmax = 28.4°, θmin = 2.0° |
Absorption correction: multi-scan (SADABS; Bruker, 1999) | h = −20→20 |
Tmin = 0.965, Tmax = 0.986 | k = −19→18 |
20353 measured reflections | l = −18→15 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.036 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.098 | H-atom parameters constrained |
S = 1.07 | w = 1/[σ2(Fo2) + (0.0579P)2 + 1.6388P] where P = (Fo2 + 2Fc2)/3 |
1145 reflections | (Δ/σ)max < 0.001 |
127 parameters | Δρmax = 0.20 e Å−3 |
0 restraints | Δρmin = −0.15 e Å−3 |
C44H22F8N4 | Z = 4 |
Mr = 758.66 | Mo Kα radiation |
Tetragonal, I42d | µ = 0.12 mm−1 |
a = 15.426 (5) Å | T = 233 K |
c = 13.991 (5) Å | 0.30 × 0.20 × 0.20 mm |
V = 3329.3 (19) Å3 |
Bruker APEXII CCD area-detector diffractometer | 1145 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 1999) | 1049 reflections with I > 2σ(I) |
Tmin = 0.965, Tmax = 0.986 | Rint = 0.041 |
20353 measured reflections |
R[F2 > 2σ(F2)] = 0.036 | 0 restraints |
wR(F2) = 0.098 | H-atom parameters constrained |
S = 1.07 | Δρmax = 0.20 e Å−3 |
1145 reflections | Δρmin = −0.15 e Å−3 |
127 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
C1 | 0.62343 (12) | −0.15392 (12) | 0.26244 (14) | 0.0234 (4) | |
C2 | 0.71372 (13) | −0.17616 (13) | 0.25131 (18) | 0.0289 (4) | |
H2 | 0.7375 | −0.2314 | 0.2561 | 0.035* | |
C3 | 0.75734 (13) | −0.10209 (12) | 0.23267 (16) | 0.0285 (4) | |
H3 | 0.8164 | −0.0970 | 0.2205 | 0.034* | |
C4 | 0.69521 (12) | −0.03261 (13) | 0.23514 (15) | 0.0233 (4) | |
C5 | 0.71381 (12) | 0.05575 (12) | 0.22542 (14) | 0.0225 (4) | |
C6 | 0.80391 (13) | 0.08176 (12) | 0.19734 (15) | 0.0240 (4) | |
C7 | 0.87363 (13) | 0.07798 (15) | 0.25940 (16) | 0.0310 (5) | |
H7 | 0.8665 | 0.0583 | 0.3217 | 0.037* | |
C8 | 0.95385 (14) | 0.10405 (16) | 0.22687 (18) | 0.0353 (5) | |
C9 | 0.96818 (14) | 0.13294 (16) | 0.1348 (2) | 0.0385 (6) | |
H9 | 1.0230 | 0.1496 | 0.1141 | 0.046* | |
C10 | 0.89782 (17) | 0.13583 (16) | 0.07556 (17) | 0.0380 (5) | |
C11 | 0.81595 (13) | 0.11143 (15) | 0.10383 (16) | 0.0299 (5) | |
H11 | 0.7695 | 0.1146 | 0.0616 | 0.036* | |
N1 | 0.61430 (10) | −0.06642 (10) | 0.25215 (12) | 0.0230 (4) | |
H1 | 0.5666 | −0.0377 | 0.2557 | 0.028* | 0.50 |
F1 | 1.02219 (8) | 0.10061 (13) | 0.28671 (12) | 0.0550 (5) | |
F2 | 0.90872 (12) | 0.16429 (14) | −0.01500 (13) | 0.0632 (5) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0216 (9) | 0.0199 (8) | 0.0288 (10) | 0.0015 (7) | −0.0003 (8) | 0.0020 (7) |
C2 | 0.0221 (9) | 0.0225 (9) | 0.0420 (11) | 0.0048 (7) | 0.0006 (9) | 0.0041 (9) |
C3 | 0.0190 (9) | 0.0260 (9) | 0.0404 (11) | 0.0033 (7) | 0.0033 (8) | 0.0040 (9) |
C4 | 0.0180 (8) | 0.0239 (9) | 0.0280 (9) | 0.0000 (7) | 0.0029 (8) | 0.0009 (7) |
C5 | 0.0193 (8) | 0.0209 (9) | 0.0273 (9) | 0.0001 (7) | 0.0017 (7) | 0.0001 (7) |
C6 | 0.0211 (9) | 0.0183 (8) | 0.0325 (9) | 0.0001 (7) | 0.0040 (8) | −0.0020 (8) |
C7 | 0.0237 (10) | 0.0389 (11) | 0.0302 (10) | −0.0006 (8) | 0.0031 (8) | −0.0023 (9) |
C8 | 0.0207 (9) | 0.0393 (12) | 0.0458 (12) | −0.0035 (9) | −0.0008 (9) | −0.0085 (11) |
C9 | 0.0239 (10) | 0.0382 (12) | 0.0533 (14) | −0.0089 (9) | 0.0134 (10) | −0.0070 (11) |
C10 | 0.0377 (12) | 0.0366 (12) | 0.0396 (12) | −0.0041 (10) | 0.0124 (10) | 0.0048 (10) |
C11 | 0.0252 (9) | 0.0305 (10) | 0.0340 (10) | −0.0003 (9) | 0.0014 (8) | 0.0046 (9) |
N1 | 0.0169 (7) | 0.0201 (8) | 0.0319 (9) | −0.0001 (6) | 0.0009 (7) | 0.0015 (6) |
F1 | 0.0214 (7) | 0.0862 (13) | 0.0575 (9) | −0.0066 (7) | −0.0062 (6) | −0.0118 (10) |
F2 | 0.0548 (10) | 0.0853 (13) | 0.0495 (9) | −0.0146 (9) | 0.0159 (8) | 0.0246 (9) |
C1—N1 | 1.365 (2) | C6—C11 | 1.398 (3) |
C1—C5i | 1.404 (3) | C7—C8 | 1.378 (3) |
C1—C2 | 1.443 (3) | C7—H7 | 0.9300 |
C2—C3 | 1.351 (3) | C8—F1 | 1.347 (3) |
C2—H2 | 0.9300 | C8—C9 | 1.381 (4) |
C3—C4 | 1.438 (3) | C9—C10 | 1.366 (4) |
C3—H3 | 0.9300 | C9—H9 | 0.9300 |
C4—N1 | 1.373 (3) | C10—F2 | 1.351 (3) |
C4—C5 | 1.400 (3) | C10—C11 | 1.376 (3) |
C5—C1ii | 1.404 (3) | C11—H11 | 0.9300 |
C5—C6 | 1.499 (3) | N1—H1 | 0.8600 |
C6—C7 | 1.383 (3) | ||
N1—C1—C5i | 125.93 (17) | C8—C7—C6 | 118.6 (2) |
N1—C1—C2 | 108.87 (16) | C8—C7—H7 | 120.7 |
C5i—C1—C2 | 125.04 (17) | C6—C7—H7 | 120.7 |
C3—C2—C1 | 107.48 (17) | F1—C8—C7 | 119.1 (2) |
C3—C2—H2 | 126.3 | F1—C8—C9 | 117.9 (2) |
C1—C2—H2 | 126.3 | C7—C8—C9 | 123.1 (2) |
C2—C3—C4 | 107.07 (17) | C10—C9—C8 | 116.69 (19) |
C2—C3—H3 | 126.5 | C10—C9—H9 | 121.7 |
C4—C3—H3 | 126.5 | C8—C9—H9 | 121.7 |
N1—C4—C5 | 124.97 (17) | F2—C10—C9 | 118.7 (2) |
N1—C4—C3 | 109.07 (16) | F2—C10—C11 | 118.2 (2) |
C5—C4—C3 | 125.93 (18) | C9—C10—C11 | 123.1 (2) |
C4—C5—C1ii | 125.26 (18) | C10—C11—C6 | 118.7 (2) |
C4—C5—C6 | 118.44 (16) | C10—C11—H11 | 120.6 |
C1ii—C5—C6 | 116.28 (17) | C6—C11—H11 | 120.6 |
C7—C6—C11 | 119.85 (18) | C1—N1—C4 | 107.47 (16) |
C7—C6—C5 | 123.03 (19) | C1—N1—H1 | 126.3 |
C11—C6—C5 | 117.12 (18) | C4—N1—H1 | 126.3 |
N1—C1—C2—C3 | −1.2 (3) | C6—C7—C8—F1 | −179.98 (19) |
C5i—C1—C2—C3 | 174.4 (2) | C6—C7—C8—C9 | −0.7 (4) |
C1—C2—C3—C4 | 1.9 (3) | F1—C8—C9—C10 | −180.0 (2) |
C2—C3—C4—N1 | −2.0 (3) | C7—C8—C9—C10 | 0.7 (4) |
C2—C3—C4—C5 | 175.8 (2) | C8—C9—C10—F2 | 179.5 (2) |
N1—C4—C5—C1ii | 4.3 (3) | C8—C9—C10—C11 | −0.2 (4) |
C3—C4—C5—C1ii | −173.2 (2) | F2—C10—C11—C6 | 179.9 (2) |
N1—C4—C5—C6 | −174.02 (18) | C9—C10—C11—C6 | −0.4 (4) |
C3—C4—C5—C6 | 8.5 (3) | C7—C6—C11—C10 | 0.4 (3) |
C4—C5—C6—C7 | −74.1 (3) | C5—C6—C11—C10 | −180.0 (2) |
C1ii—C5—C6—C7 | 107.5 (2) | C5i—C1—N1—C4 | −175.62 (19) |
C4—C5—C6—C11 | 106.3 (2) | C2—C1—N1—C4 | −0.1 (2) |
C1ii—C5—C6—C11 | −72.1 (2) | C5—C4—N1—C1 | −176.6 (2) |
C11—C6—C7—C8 | 0.1 (3) | C3—C4—N1—C1 | 1.3 (2) |
C5—C6—C7—C8 | −179.5 (2) |
Symmetry codes: (i) y+1/2, −x+1/2, −z+1/2; (ii) −y+1/2, x−1/2, −z+1/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
C7—H7···C1iii | 0.93 | 2.87 | 3.634 (2) | 140 |
C3—H3···F1iv | 0.93 | 2.66 | 3.484 (2) | 148 |
Symmetry codes: (iii) y+1, x−1/2, z+1/4; (iv) −x+2, −y, z. |
Experimental details
Crystal data | |
Chemical formula | C44H22F8N4 |
Mr | 758.66 |
Crystal system, space group | Tetragonal, I42d |
Temperature (K) | 233 |
a, c (Å) | 15.426 (5), 13.991 (5) |
V (Å3) | 3329.3 (19) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.12 |
Crystal size (mm) | 0.30 × 0.20 × 0.20 |
Data collection | |
Diffractometer | Bruker APEXII CCD area-detector |
Absorption correction | Multi-scan (SADABS; Bruker, 1999) |
Tmin, Tmax | 0.965, 0.986 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 20353, 1145, 1049 |
Rint | 0.041 |
(sin θ/λ)max (Å−1) | 0.668 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.036, 0.098, 1.07 |
No. of reflections | 1145 |
No. of parameters | 127 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.20, −0.15 |
Computer programs: APEX2 (Bruker, 2004), SAINT-Plus (Bruker, 2004), SHELXS97 (Sheldrick, 1997), SHELXL97 (Sheldrick, 1997), ORTEP-32 (Farrugia, 1997) and Mercury (Macrae et al., 2006).
D—H···A | D—H | H···A | D···A | D—H···A |
C7—H7···C1i | 0.93 | 2.87 | 3.634 (2) | 140.4 |
C3—H3···F1ii | 0.93 | 2.66 | 3.484 (2) | 148.4 |
Symmetry codes: (i) y+1, x−1/2, z+1/4; (ii) −x+2, −y, z. |
Acknowledgements
This work was supported by the Department of Science and Technology, Government of India (to PB). We thank Mr V. Ramkumar for assistance with the data collection and the Department of Chemistry, IIT Madras, Chennai, for the XRD facility.
References
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Free base porphyrin, H2T(3',5'-DFP)P was synthesised using literature method (Tamiaki et al. 2000). The compound (I) crystallizes in a tetragonal space group, I-4 2d with four molecules in the unit cell. ORTEP of the compound (I) is shown in Fig. 1. The observed bond lengths of the C20N4 core is similar to the related H2TPP structure (Silvers & Tulinsky, 1967). The molecule shows considerable nonplanar geometry (Fig. 1b) with the extent of distortion of the porphyrin ring atoms is as high as + - 0.343 (4) Å and the average displacement of the β-pyrrole carbon is + - ΔCβ = 0.129 (3) Å. Macrocyclic ring (24-atom core) shows ruffled geometry (Senge, 2000) while the related H2TPP shows nearly planar structure. The opposite nitrogens are situated at 4.082Å and it is shorter than that reported for H2TPP (4.20 Å)(Silvers & Tulinsky, 1967). The 3,5-difluorophenyl groups are nearly planar and oriented perpendicular to the porphyrin ring mean plane with an average dihedral angle of 72.7 (5) °. In adition, the meso<i/>-carbon to aryl carbon, C5-C6 distance is found to be 1.499 (2) Å indicating that the aryl group is not significantly conjugated with the porphyrin π-system. The core hydrogens are disordered and are fixed with 50% occupancy on each N atom of the N4H2 core.
Molecular packing diagram of the compound (I) is shown in Fig 2. Unit cell ab plane forms the 2-dimensional (C-H···F) hydrogen-bonded framework parallel to (001) plane. Each porphyrin in the layer is surrounded by four other nearest neighbours through weak hydrogen bonding (C3-H3···F1) interactions. A pair of such C-H···F hydrogen bonding is observed with each adjacent porphyrin with a shortest H3···F1 distance of 2.656 Å. Such a long hydrogen bonding distance is expected for weak C-H···F interactions (Thalladi et al., 1998). Furthermore, layers are interconnected via C-H···π interactions (Fig.3). On each face of the porphyrin, there is a pair of symmetry related C-H···π interactions for aryl(C7-H7)···C1(α-pyrrole) with H7···C1 distance of 2.869 Å between the two other adjacent porphyrins from the neighbouring layer. This H7···C1 distance indicates weak C-H···π interactions (Steiner, 2002). The title compound shows unusual nonplanar geometry of the macrocyclic ring.