organic compounds
Ethyl 7-amino-1-cyclopropyl-6-fluoro-8-methoxy-4-oxo-1,4-dihydroquinoline-3-carboxylate monohydrate
aDepartment of Medicinal Chemistry, West China School of Pharmacy, Sichuan University, Chengdu 610041, People's Republic of China, and bThe Center for Testing and Analysis, Sichuan University, Chengdu 610064, People's Republic of China
*Correspondence e-mail: lingling.weng@yahoo.com.cn
In the title compound, C16H17FN2O4·H2O, the dihedral angle between the heterocyclic ring and the benzene ring is 5.77 (9)°, that between the heterocycle and the ethoxycarbonyl plane is 15.5 (1)°, and that between the heterocyclic ring and the cyclopropane ring is 67.75 (13)°. In the molecules are linked into a ribbon-like structure along the c axis by N—H⋯O and O—H⋯O hydrogen bonds.
Experimental
Crystal data
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Data collection
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Refinement
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Data collection: DIFRAC (Gabe & White, 1993); cell DIFRAC; data reduction: NRCVAX (Gabe et al., 1989); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: SHELXL97.
Supporting information
10.1107/S1600536808002547/ci2556sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536808002547/ci2556Isup2.hkl
Ethyl 7-azido-1-cyclopropyl-6-fluoro-8-methoxyl-4-oxo-1,4-dihydroquinoline-3- carboxylate (2 g, 5.8 mmol), 5% Pd/C (0.4 g) were suspended in methanol (20 ml) and the mixture was hydrogenated at 303 K for 6 h. The reaction mixture was then filtered and concentrated under vacuum. The residue obtained was purified by silica gel
Single crystals suitable for X-ray analysis were obtained by slow evaporation of a acetyl acetate-chloroform (1.2:1 v/v) solution at room temperature.The water H atoms were located in a difference Fourier map and refined isotropically. The remaining H atoms were placed in the calculated positions [C—H = 0.93 (aromatic) and 0.96 Å (methyl)] and refined in the riding-model approximation, with Uiso(H) = 1.2Ueq(aromatic-C) and 1.5Ueq(methyl-C).
Data collection: DIFRAC (Gabe & White, 1993); cell
DIFRAC (Gabe & White, 1993); data reduction: NRCVAX (Gabe et al., 1989); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).C16H17FN2O4·H2O | F(000) = 712 |
Mr = 338.33 | Dx = 1.377 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 24 reflections |
a = 10.096 (4) Å | θ = 4.5–7.4° |
b = 14.699 (5) Å | µ = 0.11 mm−1 |
c = 11.028 (6) Å | T = 291 K |
β = 94.26 (4)° | Block, yellow |
V = 1632.0 (12) Å3 | 0.45 × 0.42 × 0.39 mm |
Z = 4 |
Enraf–Nonius CAD-4 diffractometer | Rint = 0.007 |
Radiation source: fine-focus sealed tube | θmax = 25.4°, θmin = 2.3° |
Graphite monochromator | h = −12→12 |
ω/2θ scans | k = 0→17 |
3157 measured reflections | l = −4→13 |
3009 independent reflections | 3 standard reflections every 300 reflections |
1741 reflections with I > 2σ(I) | intensity decay: 0.8% |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.043 | Hydrogen site location: mixed |
wR(F2) = 0.125 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.04 | w = 1/[σ2(Fo2) + (0.0627P)2 + 0.1314P] where P = (Fo2 + 2Fc2)/3 |
3009 reflections | (Δ/σ)max = 0.001 |
235 parameters | Δρmax = 0.20 e Å−3 |
0 restraints | Δρmin = −0.19 e Å−3 |
C16H17FN2O4·H2O | V = 1632.0 (12) Å3 |
Mr = 338.33 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 10.096 (4) Å | µ = 0.11 mm−1 |
b = 14.699 (5) Å | T = 291 K |
c = 11.028 (6) Å | 0.45 × 0.42 × 0.39 mm |
β = 94.26 (4)° |
Enraf–Nonius CAD-4 diffractometer | Rint = 0.007 |
3157 measured reflections | 3 standard reflections every 300 reflections |
3009 independent reflections | intensity decay: 0.8% |
1741 reflections with I > 2σ(I) |
R[F2 > 2σ(F2)] = 0.043 | 0 restraints |
wR(F2) = 0.125 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.04 | Δρmax = 0.20 e Å−3 |
3009 reflections | Δρmin = −0.19 e Å−3 |
235 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
F1 | 0.51891 (13) | 0.59935 (11) | 1.01305 (12) | 0.0667 (4) | |
O1 | 0.07128 (14) | 0.68291 (10) | 1.03507 (12) | 0.0451 (4) | |
O2 | 0.33328 (14) | 0.56826 (12) | 0.58213 (13) | 0.0519 (4) | |
O3 | −0.04405 (16) | 0.62649 (11) | 0.41364 (13) | 0.0552 (5) | |
O4 | 0.16963 (18) | 0.62837 (18) | 0.37733 (15) | 0.1007 (9) | |
N1 | 0.3174 (3) | 0.65375 (16) | 1.14712 (18) | 0.0514 (5) | |
H1N1 | 0.385 (3) | 0.6210 (17) | 1.184 (2) | 0.068 (9)* | |
H2N1 | 0.248 (3) | 0.6504 (18) | 1.186 (2) | 0.071 (9)* | |
N2 | 0.01966 (16) | 0.64366 (12) | 0.77689 (13) | 0.0374 (4) | |
C1 | 0.3794 (2) | 0.59542 (15) | 0.83243 (19) | 0.0436 (5) | |
H1 | 0.4507 | 0.5774 | 0.7894 | 0.052* | |
C2 | 0.3970 (2) | 0.61005 (15) | 0.95442 (19) | 0.0433 (5) | |
C3 | 0.2938 (2) | 0.63708 (14) | 1.02489 (17) | 0.0397 (5) | |
C4 | 0.1693 (2) | 0.65127 (13) | 0.96495 (17) | 0.0352 (5) | |
C5 | 0.1457 (2) | 0.63418 (13) | 0.83915 (17) | 0.0333 (5) | |
C6 | 0.2533 (2) | 0.60753 (13) | 0.77155 (17) | 0.0358 (5) | |
C7 | 0.0710 (3) | 0.78037 (18) | 1.0445 (3) | 0.0786 (9) | |
H7A | 0.1564 | 0.8008 | 1.0778 | 0.118* | |
H7B | 0.0041 | 0.7990 | 1.0968 | 0.118* | |
H7C | 0.0523 | 0.8064 | 0.9653 | 0.118* | |
C8 | 0.2389 (2) | 0.59719 (14) | 0.63888 (17) | 0.0378 (5) | |
C9 | 0.1107 (2) | 0.62227 (14) | 0.58234 (17) | 0.0401 (5) | |
C10 | 0.0092 (2) | 0.64129 (14) | 0.65419 (17) | 0.0397 (5) | |
H10 | −0.0738 | 0.6536 | 0.6152 | 0.048* | |
C11 | −0.1031 (2) | 0.65083 (17) | 0.83913 (18) | 0.0449 (6) | |
H11 | −0.1233 | 0.7109 | 0.8716 | 0.054* | |
C12 | −0.2192 (2) | 0.5947 (2) | 0.7935 (2) | 0.0723 (9) | |
H12A | −0.2086 | 0.5554 | 0.7242 | 0.087* | |
H12B | −0.3070 | 0.6208 | 0.7971 | 0.087* | |
C13 | −0.1436 (2) | 0.5712 (2) | 0.9108 (2) | 0.0627 (7) | |
H13A | −0.1857 | 0.5830 | 0.9854 | 0.075* | |
H13B | −0.0873 | 0.5177 | 0.9126 | 0.075* | |
C14 | 0.0853 (2) | 0.62535 (17) | 0.44863 (19) | 0.0508 (6) | |
C15 | −0.0802 (3) | 0.6314 (2) | 0.28436 (19) | 0.0693 (8) | |
H15A | −0.0528 | 0.5763 | 0.2449 | 0.083* | |
H15B | −0.0360 | 0.6826 | 0.2493 | 0.083* | |
C16 | −0.2257 (2) | 0.64228 (17) | 0.2653 (2) | 0.0589 (7) | |
H16A | −0.2687 | 0.5904 | 0.2979 | 0.088* | |
H16B | −0.2506 | 0.6471 | 0.1798 | 0.088* | |
H16C | −0.2523 | 0.6964 | 0.3058 | 0.088* | |
O1W | 0.5509 (2) | 0.44950 (16) | 0.65115 (16) | 0.0715 (6) | |
H1W | 0.606 (3) | 0.446 (2) | 0.598 (3) | 0.091 (11)* | |
H2W | 0.486 (3) | 0.488 (2) | 0.621 (3) | 0.097 (11)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
F1 | 0.0396 (8) | 0.1032 (12) | 0.0559 (8) | 0.0081 (7) | −0.0058 (6) | −0.0147 (8) |
O1 | 0.0457 (9) | 0.0567 (10) | 0.0346 (7) | 0.0092 (8) | 0.0143 (6) | −0.0021 (7) |
O2 | 0.0422 (9) | 0.0766 (11) | 0.0388 (8) | 0.0138 (8) | 0.0163 (7) | −0.0026 (7) |
O3 | 0.0469 (10) | 0.0891 (13) | 0.0303 (8) | 0.0030 (9) | 0.0083 (7) | 0.0013 (7) |
O4 | 0.0523 (12) | 0.215 (3) | 0.0373 (10) | 0.0254 (13) | 0.0193 (9) | 0.0150 (12) |
N1 | 0.0482 (13) | 0.0683 (15) | 0.0378 (11) | 0.0021 (11) | 0.0036 (10) | −0.0036 (10) |
N2 | 0.0332 (10) | 0.0504 (11) | 0.0298 (9) | 0.0072 (8) | 0.0109 (7) | 0.0037 (7) |
C1 | 0.0340 (12) | 0.0527 (14) | 0.0451 (13) | 0.0016 (10) | 0.0109 (10) | −0.0051 (10) |
C2 | 0.0337 (12) | 0.0528 (14) | 0.0428 (12) | 0.0019 (10) | −0.0008 (10) | −0.0034 (10) |
C3 | 0.0449 (13) | 0.0402 (12) | 0.0344 (11) | −0.0043 (10) | 0.0063 (9) | 0.0002 (9) |
C4 | 0.0364 (12) | 0.0368 (11) | 0.0340 (10) | 0.0013 (9) | 0.0121 (9) | 0.0001 (9) |
C5 | 0.0331 (11) | 0.0336 (11) | 0.0341 (10) | 0.0011 (9) | 0.0075 (8) | 0.0031 (8) |
C6 | 0.0337 (12) | 0.0373 (12) | 0.0373 (11) | −0.0026 (9) | 0.0085 (9) | −0.0001 (8) |
C7 | 0.097 (2) | 0.0622 (18) | 0.0805 (19) | 0.0211 (17) | 0.0311 (17) | −0.0148 (15) |
C8 | 0.0384 (12) | 0.0414 (12) | 0.0355 (11) | −0.0007 (10) | 0.0145 (9) | −0.0008 (9) |
C9 | 0.0378 (12) | 0.0518 (14) | 0.0315 (11) | 0.0038 (10) | 0.0093 (9) | 0.0018 (9) |
C10 | 0.0350 (12) | 0.0519 (14) | 0.0327 (10) | 0.0079 (10) | 0.0069 (9) | 0.0078 (9) |
C11 | 0.0320 (12) | 0.0659 (15) | 0.0385 (11) | 0.0082 (11) | 0.0129 (9) | 0.0041 (10) |
C12 | 0.0403 (15) | 0.130 (3) | 0.0480 (14) | −0.0086 (15) | 0.0124 (12) | 0.0057 (15) |
C13 | 0.0492 (15) | 0.094 (2) | 0.0469 (13) | −0.0127 (14) | 0.0168 (11) | 0.0119 (13) |
C14 | 0.0444 (14) | 0.0763 (17) | 0.0331 (11) | 0.0094 (12) | 0.0123 (10) | 0.0023 (11) |
C15 | 0.0627 (18) | 0.114 (2) | 0.0311 (12) | 0.0122 (16) | 0.0048 (12) | −0.0030 (13) |
C16 | 0.0602 (17) | 0.0649 (17) | 0.0508 (14) | 0.0107 (13) | −0.0012 (12) | −0.0041 (12) |
O1W | 0.0600 (13) | 0.1157 (18) | 0.0396 (9) | 0.0301 (12) | 0.0077 (9) | −0.0035 (10) |
F1—C2 | 1.356 (2) | C7—H7B | 0.96 |
O1—C4 | 1.381 (2) | C7—H7C | 0.96 |
O1—C7 | 1.436 (3) | C8—C9 | 1.442 (3) |
O2—C8 | 1.252 (2) | C9—C10 | 1.371 (3) |
O3—C14 | 1.334 (3) | C9—C14 | 1.479 (3) |
O3—C15 | 1.447 (3) | C10—H10 | 0.93 |
O4—C14 | 1.202 (3) | C11—C13 | 1.486 (3) |
N1—C3 | 1.373 (3) | C11—C12 | 1.490 (3) |
N1—H1N1 | 0.91 (3) | C11—H11 | 0.98 |
N1—H2N1 | 0.85 (3) | C12—C13 | 1.492 (4) |
N2—C10 | 1.350 (2) | C12—H12A | 0.97 |
N2—C5 | 1.408 (3) | C12—H12B | 0.97 |
N2—C11 | 1.465 (3) | C13—H13A | 0.97 |
C1—C2 | 1.361 (3) | C13—H13B | 0.97 |
C1—C6 | 1.405 (3) | C15—C16 | 1.477 (3) |
C1—H1 | 0.9300 | C15—H15A | 0.97 |
C2—C3 | 1.403 (3) | C15—H15B | 0.97 |
C3—C4 | 1.391 (3) | C16—H16A | 0.96 |
C4—C5 | 1.413 (3) | C16—H16B | 0.96 |
C5—C6 | 1.418 (3) | C16—H16C | 0.96 |
C6—C8 | 1.467 (3) | O1W—H1W | 0.84 (3) |
C7—H7A | 0.96 | O1W—H2W | 0.91 (3) |
C4—O1—C7 | 112.45 (17) | N2—C10—C9 | 125.34 (19) |
C14—O3—C15 | 117.11 (18) | N2—C10—H10 | 117.3 |
C3—N1—H1N1 | 114.2 (16) | C9—C10—H10 | 117.3 |
C3—N1—H2N1 | 113.3 (18) | N2—C11—C13 | 117.9 (2) |
H1N1—N1—H2N1 | 112 (2) | N2—C11—C12 | 118.3 (2) |
C10—N2—C5 | 119.16 (17) | C13—C11—C12 | 60.20 (17) |
C10—N2—C11 | 117.75 (17) | N2—C11—H11 | 116.3 |
C5—N2—C11 | 123.00 (15) | C13—C11—H11 | 116.3 |
C2—C1—C6 | 119.99 (19) | C12—C11—H11 | 116.3 |
C2—C1—H1 | 120.0 | C11—C12—C13 | 59.79 (16) |
C6—C1—H1 | 120.0 | C11—C12—H12A | 117.8 |
F1—C2—C1 | 120.05 (19) | C13—C12—H12A | 117.8 |
F1—C2—C3 | 117.01 (18) | C11—C12—H12B | 117.8 |
C1—C2—C3 | 122.9 (2) | C13—C12—H12B | 117.8 |
N1—C3—C4 | 121.6 (2) | H12A—C12—H12B | 114.9 |
N1—C3—C2 | 120.8 (2) | C11—C13—C12 | 60.01 (16) |
C4—C3—C2 | 117.47 (18) | C11—C13—H13A | 117.8 |
O1—C4—C3 | 116.36 (17) | C12—C13—H13A | 117.8 |
O1—C4—C5 | 122.29 (18) | C11—C13—H13B | 117.8 |
C3—C4—C5 | 121.36 (18) | C12—C13—H13B | 117.8 |
N2—C5—C4 | 122.81 (18) | H13A—C13—H13B | 114.9 |
N2—C5—C6 | 118.12 (17) | O4—C14—O3 | 122.4 (2) |
C4—C5—C6 | 119.06 (18) | O4—C14—C9 | 125.0 (2) |
C1—C6—C5 | 119.07 (18) | O3—C14—C9 | 112.52 (18) |
C1—C6—C8 | 118.85 (18) | O3—C15—C16 | 108.7 (2) |
C5—C6—C8 | 121.99 (18) | O3—C15—H15A | 109.9 |
O1—C7—H7A | 109.5 | C16—C15—H15A | 109.9 |
O1—C7—H7B | 109.5 | O3—C15—H15B | 109.9 |
H7A—C7—H7B | 109.5 | C16—C15—H15B | 109.9 |
O1—C7—H7C | 109.5 | H15A—C15—H15B | 108.3 |
H7A—C7—H7C | 109.5 | C15—C16—H16A | 109.5 |
H7B—C7—H7C | 109.5 | C15—C16—H16B | 109.5 |
O2—C8—C9 | 124.20 (18) | H16A—C16—H16B | 109.5 |
O2—C8—C6 | 120.70 (19) | C15—C16—H16C | 109.5 |
C9—C8—C6 | 115.09 (17) | H16A—C16—H16C | 109.5 |
C10—C9—C8 | 119.22 (18) | H16B—C16—H16C | 109.5 |
C10—C9—C14 | 119.2 (2) | H1W—O1W—H2W | 107 (3) |
C8—C9—C14 | 121.54 (18) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N1···O1Wi | 0.91 (3) | 2.15 (3) | 2.930 (3) | 143 (2) |
N1—H2N1···O4ii | 0.85 (3) | 2.33 (3) | 3.061 (3) | 144 (2) |
O1W—H1W···O2iii | 0.84 (3) | 2.13 (3) | 2.916 (3) | 155 (3) |
O1W—H2W···O2 | 0.91 (3) | 1.96 (3) | 2.864 (3) | 171 (3) |
Symmetry codes: (i) −x+1, −y+1, −z+2; (ii) x, y, z+1; (iii) −x+1, −y+1, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C16H17FN2O4·H2O |
Mr | 338.33 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 291 |
a, b, c (Å) | 10.096 (4), 14.699 (5), 11.028 (6) |
β (°) | 94.26 (4) |
V (Å3) | 1632.0 (12) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.11 |
Crystal size (mm) | 0.45 × 0.42 × 0.39 |
Data collection | |
Diffractometer | Enraf–Nonius CAD-4 diffractometer |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 3157, 3009, 1741 |
Rint | 0.007 |
(sin θ/λ)max (Å−1) | 0.604 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.043, 0.125, 1.04 |
No. of reflections | 3009 |
No. of parameters | 235 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.20, −0.19 |
Computer programs: DIFRAC (Gabe & White, 1993), NRCVAX (Gabe et al., 1989), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 1997).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N1···O1Wi | 0.91 (3) | 2.15 (3) | 2.930 (3) | 143 (2) |
N1—H2N1···O4ii | 0.85 (3) | 2.33 (3) | 3.061 (3) | 144 (2) |
O1W—H1W···O2iii | 0.84 (3) | 2.13 (3) | 2.916 (3) | 155 (3) |
O1W—H2W···O2 | 0.91 (3) | 1.96 (3) | 2.864 (3) | 171 (3) |
Symmetry codes: (i) −x+1, −y+1, −z+2; (ii) x, y, z+1; (iii) −x+1, −y+1, −z+1. |
References
Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565. CrossRef IUCr Journals Google Scholar
Fujita, M. & Chiba, K. (1998). Chem. Pharm. Bull. 46, 631–638. Web of Science CrossRef CAS PubMed Google Scholar
Gabe, E. J., Le Page, Y., Charland, J.-P., Lee, F. L. & White, P. S. (1989). J. Appl. Cryst. 22, 384–387. CrossRef CAS Web of Science IUCr Journals Google Scholar
Gabe, E. J. & White, P. S. (1993). DIFRAC. American Crystallographic Association Pittsburgh Meeting Abstract PA 104. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Quinolone antibacterials were found several decades ago, and some excellent antibacterials have been developed and used widely now (Fujita & Chiba, 1998). An interest in search of more potent antibacterial agents led us to design and synthesis a new type of quinoline derivatives. The title compound is one of the key intermediates and we report here its crystal structure.
The pyridinone ring is planar to within ±0.057 (2) Å (Fig. 1). The dihedral angle between the pyridine and benzene rings is 5.77 (9)°, and that between the pyridine and carboxylate plane is 15.5 (1)°. In the crystal structure, the molecules are linked into a ribbon like structure along the c axis (Fig. 2) by N—H···O and O—H···O hydrogen bonds (Table 1).