Related literature
For general background, see: Fujita & Chiba (1998
).
Experimental
Crystal data
C16H17FN2O4·H2O Mr = 338.33 Monoclinic, P 21 /n a = 10.096 (4) Å b = 14.699 (5) Å c = 11.028 (6) Å β = 94.26 (4)° V = 1632.0 (12) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 291 (2) K 0.45 × 0.42 × 0.39 mm
|
Data collection
Enraf–Nonius CAD-4 diffractometer Absorption correction: none 3157 measured reflections 3009 independent reflections 1741 reflections with I > 2σ(I) Rint = 0.007 3 standard reflections every 300 reflections intensity decay: 0.8%
|
D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A | N1—H1N1⋯O1Wi | 0.91 (3) | 2.15 (3) | 2.930 (3) | 143 (2) | N1—H2N1⋯O4ii | 0.85 (3) | 2.33 (3) | 3.061 (3) | 144 (2) | O1W—H1W⋯O2iii | 0.84 (3) | 2.13 (3) | 2.916 (3) | 155 (3) | O1W—H2W⋯O2 | 0.91 (3) | 1.96 (3) | 2.864 (3) | 171 (3) | Symmetry codes: (i) -x+1, -y+1, -z+2; (ii) x, y, z+1; (iii) -x+1, -y+1, -z+1. | |
Data collection: DIFRAC (Gabe & White, 1993
); cell refinement: DIFRAC; data reduction: NRCVAX (Gabe et al., 1989
); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008
); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008
); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997
); software used to prepare material for publication: SHELXL97.
Supporting information
Ethyl 7-azido-1-cyclopropyl-6-fluoro-8-methoxyl-4-oxo-1,4-dihydroquinoline-3- carboxylate (2 g, 5.8 mmol), 5% Pd/C (0.4 g) were suspended in methanol (20 ml) and the mixture was hydrogenated at 303 K for 6 h. The reaction mixture was then filtered and concentrated under vacuum. The residue obtained was purified by silica gel chromatography. Single crystals suitable for X-ray analysis were obtained by slow evaporation of a acetyl acetate-chloroform (1.2:1 v/v) solution at room temperature.
The water H atoms were located in a difference Fourier map and refined isotropically. The remaining H atoms were placed in the calculated positions [C—H = 0.93 (aromatic) and 0.96 Å (methyl)] and refined in the riding-model approximation, with Uiso(H) = 1.2Ueq(aromatic-C) and 1.5Ueq(methyl-C).
Data collection: DIFRAC (Gabe & White, 1993); cell refinement: DIFRAC (Gabe & White, 1993); data reduction: NRCVAX (Gabe et al., 1989); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).
Ethyl 7-amino-1-cyclopropyl-6-fluoro-8-methoxy-4-oxo-1,4-dihydroquinoline- 3-carboxylate monohydrate
top Crystal data top C16H17FN2O4·H2O | F(000) = 712 |
Mr = 338.33 | Dx = 1.377 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 24 reflections |
a = 10.096 (4) Å | θ = 4.5–7.4° |
b = 14.699 (5) Å | µ = 0.11 mm−1 |
c = 11.028 (6) Å | T = 291 K |
β = 94.26 (4)° | Block, yellow |
V = 1632.0 (12) Å3 | 0.45 × 0.42 × 0.39 mm |
Z = 4 | |
Data collection top Enraf–Nonius CAD-4 diffractometer | Rint = 0.007 |
Radiation source: fine-focus sealed tube | θmax = 25.4°, θmin = 2.3° |
Graphite monochromator | h = −12→12 |
ω/2θ scans | k = 0→17 |
3157 measured reflections | l = −4→13 |
3009 independent reflections | 3 standard reflections every 300 reflections |
1741 reflections with I > 2σ(I) | intensity decay: 0.8% |
Refinement top Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.043 | Hydrogen site location: mixed |
wR(F2) = 0.125 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.04 | w = 1/[σ2(Fo2) + (0.0627P)2 + 0.1314P] where P = (Fo2 + 2Fc2)/3 |
3009 reflections | (Δ/σ)max = 0.001 |
235 parameters | Δρmax = 0.20 e Å−3 |
0 restraints | Δρmin = −0.19 e Å−3 |
Crystal data top C16H17FN2O4·H2O | V = 1632.0 (12) Å3 |
Mr = 338.33 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 10.096 (4) Å | µ = 0.11 mm−1 |
b = 14.699 (5) Å | T = 291 K |
c = 11.028 (6) Å | 0.45 × 0.42 × 0.39 mm |
β = 94.26 (4)° | |
Data collection top Enraf–Nonius CAD-4 diffractometer | Rint = 0.007 |
3157 measured reflections | 3 standard reflections every 300 reflections |
3009 independent reflections | intensity decay: 0.8% |
1741 reflections with I > 2σ(I) | |
Refinement top R[F2 > 2σ(F2)] = 0.043 | 0 restraints |
wR(F2) = 0.125 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.04 | Δρmax = 0.20 e Å−3 |
3009 reflections | Δρmin = −0.19 e Å−3 |
235 parameters | |
Special details top Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
F1 | 0.51891 (13) | 0.59935 (11) | 1.01305 (12) | 0.0667 (4) | |
O1 | 0.07128 (14) | 0.68291 (10) | 1.03507 (12) | 0.0451 (4) | |
O2 | 0.33328 (14) | 0.56826 (12) | 0.58213 (13) | 0.0519 (4) | |
O3 | −0.04405 (16) | 0.62649 (11) | 0.41364 (13) | 0.0552 (5) | |
O4 | 0.16963 (18) | 0.62837 (18) | 0.37733 (15) | 0.1007 (9) | |
N1 | 0.3174 (3) | 0.65375 (16) | 1.14712 (18) | 0.0514 (5) | |
H1N1 | 0.385 (3) | 0.6210 (17) | 1.184 (2) | 0.068 (9)* | |
H2N1 | 0.248 (3) | 0.6504 (18) | 1.186 (2) | 0.071 (9)* | |
N2 | 0.01966 (16) | 0.64366 (12) | 0.77689 (13) | 0.0374 (4) | |
C1 | 0.3794 (2) | 0.59542 (15) | 0.83243 (19) | 0.0436 (5) | |
H1 | 0.4507 | 0.5774 | 0.7894 | 0.052* | |
C2 | 0.3970 (2) | 0.61005 (15) | 0.95442 (19) | 0.0433 (5) | |
C3 | 0.2938 (2) | 0.63708 (14) | 1.02489 (17) | 0.0397 (5) | |
C4 | 0.1693 (2) | 0.65127 (13) | 0.96495 (17) | 0.0352 (5) | |
C5 | 0.1457 (2) | 0.63418 (13) | 0.83915 (17) | 0.0333 (5) | |
C6 | 0.2533 (2) | 0.60753 (13) | 0.77155 (17) | 0.0358 (5) | |
C7 | 0.0710 (3) | 0.78037 (18) | 1.0445 (3) | 0.0786 (9) | |
H7A | 0.1564 | 0.8008 | 1.0778 | 0.118* | |
H7B | 0.0041 | 0.7990 | 1.0968 | 0.118* | |
H7C | 0.0523 | 0.8064 | 0.9653 | 0.118* | |
C8 | 0.2389 (2) | 0.59719 (14) | 0.63888 (17) | 0.0378 (5) | |
C9 | 0.1107 (2) | 0.62227 (14) | 0.58234 (17) | 0.0401 (5) | |
C10 | 0.0092 (2) | 0.64129 (14) | 0.65419 (17) | 0.0397 (5) | |
H10 | −0.0738 | 0.6536 | 0.6152 | 0.048* | |
C11 | −0.1031 (2) | 0.65083 (17) | 0.83913 (18) | 0.0449 (6) | |
H11 | −0.1233 | 0.7109 | 0.8716 | 0.054* | |
C12 | −0.2192 (2) | 0.5947 (2) | 0.7935 (2) | 0.0723 (9) | |
H12A | −0.2086 | 0.5554 | 0.7242 | 0.087* | |
H12B | −0.3070 | 0.6208 | 0.7971 | 0.087* | |
C13 | −0.1436 (2) | 0.5712 (2) | 0.9108 (2) | 0.0627 (7) | |
H13A | −0.1857 | 0.5830 | 0.9854 | 0.075* | |
H13B | −0.0873 | 0.5177 | 0.9126 | 0.075* | |
C14 | 0.0853 (2) | 0.62535 (17) | 0.44863 (19) | 0.0508 (6) | |
C15 | −0.0802 (3) | 0.6314 (2) | 0.28436 (19) | 0.0693 (8) | |
H15A | −0.0528 | 0.5763 | 0.2449 | 0.083* | |
H15B | −0.0360 | 0.6826 | 0.2493 | 0.083* | |
C16 | −0.2257 (2) | 0.64228 (17) | 0.2653 (2) | 0.0589 (7) | |
H16A | −0.2687 | 0.5904 | 0.2979 | 0.088* | |
H16B | −0.2506 | 0.6471 | 0.1798 | 0.088* | |
H16C | −0.2523 | 0.6964 | 0.3058 | 0.088* | |
O1W | 0.5509 (2) | 0.44950 (16) | 0.65115 (16) | 0.0715 (6) | |
H1W | 0.606 (3) | 0.446 (2) | 0.598 (3) | 0.091 (11)* | |
H2W | 0.486 (3) | 0.488 (2) | 0.621 (3) | 0.097 (11)* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
F1 | 0.0396 (8) | 0.1032 (12) | 0.0559 (8) | 0.0081 (7) | −0.0058 (6) | −0.0147 (8) |
O1 | 0.0457 (9) | 0.0567 (10) | 0.0346 (7) | 0.0092 (8) | 0.0143 (6) | −0.0021 (7) |
O2 | 0.0422 (9) | 0.0766 (11) | 0.0388 (8) | 0.0138 (8) | 0.0163 (7) | −0.0026 (7) |
O3 | 0.0469 (10) | 0.0891 (13) | 0.0303 (8) | 0.0030 (9) | 0.0083 (7) | 0.0013 (7) |
O4 | 0.0523 (12) | 0.215 (3) | 0.0373 (10) | 0.0254 (13) | 0.0193 (9) | 0.0150 (12) |
N1 | 0.0482 (13) | 0.0683 (15) | 0.0378 (11) | 0.0021 (11) | 0.0036 (10) | −0.0036 (10) |
N2 | 0.0332 (10) | 0.0504 (11) | 0.0298 (9) | 0.0072 (8) | 0.0109 (7) | 0.0037 (7) |
C1 | 0.0340 (12) | 0.0527 (14) | 0.0451 (13) | 0.0016 (10) | 0.0109 (10) | −0.0051 (10) |
C2 | 0.0337 (12) | 0.0528 (14) | 0.0428 (12) | 0.0019 (10) | −0.0008 (10) | −0.0034 (10) |
C3 | 0.0449 (13) | 0.0402 (12) | 0.0344 (11) | −0.0043 (10) | 0.0063 (9) | 0.0002 (9) |
C4 | 0.0364 (12) | 0.0368 (11) | 0.0340 (10) | 0.0013 (9) | 0.0121 (9) | 0.0001 (9) |
C5 | 0.0331 (11) | 0.0336 (11) | 0.0341 (10) | 0.0011 (9) | 0.0075 (8) | 0.0031 (8) |
C6 | 0.0337 (12) | 0.0373 (12) | 0.0373 (11) | −0.0026 (9) | 0.0085 (9) | −0.0001 (8) |
C7 | 0.097 (2) | 0.0622 (18) | 0.0805 (19) | 0.0211 (17) | 0.0311 (17) | −0.0148 (15) |
C8 | 0.0384 (12) | 0.0414 (12) | 0.0355 (11) | −0.0007 (10) | 0.0145 (9) | −0.0008 (9) |
C9 | 0.0378 (12) | 0.0518 (14) | 0.0315 (11) | 0.0038 (10) | 0.0093 (9) | 0.0018 (9) |
C10 | 0.0350 (12) | 0.0519 (14) | 0.0327 (10) | 0.0079 (10) | 0.0069 (9) | 0.0078 (9) |
C11 | 0.0320 (12) | 0.0659 (15) | 0.0385 (11) | 0.0082 (11) | 0.0129 (9) | 0.0041 (10) |
C12 | 0.0403 (15) | 0.130 (3) | 0.0480 (14) | −0.0086 (15) | 0.0124 (12) | 0.0057 (15) |
C13 | 0.0492 (15) | 0.094 (2) | 0.0469 (13) | −0.0127 (14) | 0.0168 (11) | 0.0119 (13) |
C14 | 0.0444 (14) | 0.0763 (17) | 0.0331 (11) | 0.0094 (12) | 0.0123 (10) | 0.0023 (11) |
C15 | 0.0627 (18) | 0.114 (2) | 0.0311 (12) | 0.0122 (16) | 0.0048 (12) | −0.0030 (13) |
C16 | 0.0602 (17) | 0.0649 (17) | 0.0508 (14) | 0.0107 (13) | −0.0012 (12) | −0.0041 (12) |
O1W | 0.0600 (13) | 0.1157 (18) | 0.0396 (9) | 0.0301 (12) | 0.0077 (9) | −0.0035 (10) |
Geometric parameters (Å, º) top F1—C2 | 1.356 (2) | C7—H7B | 0.96 |
O1—C4 | 1.381 (2) | C7—H7C | 0.96 |
O1—C7 | 1.436 (3) | C8—C9 | 1.442 (3) |
O2—C8 | 1.252 (2) | C9—C10 | 1.371 (3) |
O3—C14 | 1.334 (3) | C9—C14 | 1.479 (3) |
O3—C15 | 1.447 (3) | C10—H10 | 0.93 |
O4—C14 | 1.202 (3) | C11—C13 | 1.486 (3) |
N1—C3 | 1.373 (3) | C11—C12 | 1.490 (3) |
N1—H1N1 | 0.91 (3) | C11—H11 | 0.98 |
N1—H2N1 | 0.85 (3) | C12—C13 | 1.492 (4) |
N2—C10 | 1.350 (2) | C12—H12A | 0.97 |
N2—C5 | 1.408 (3) | C12—H12B | 0.97 |
N2—C11 | 1.465 (3) | C13—H13A | 0.97 |
C1—C2 | 1.361 (3) | C13—H13B | 0.97 |
C1—C6 | 1.405 (3) | C15—C16 | 1.477 (3) |
C1—H1 | 0.9300 | C15—H15A | 0.97 |
C2—C3 | 1.403 (3) | C15—H15B | 0.97 |
C3—C4 | 1.391 (3) | C16—H16A | 0.96 |
C4—C5 | 1.413 (3) | C16—H16B | 0.96 |
C5—C6 | 1.418 (3) | C16—H16C | 0.96 |
C6—C8 | 1.467 (3) | O1W—H1W | 0.84 (3) |
C7—H7A | 0.96 | O1W—H2W | 0.91 (3) |
| | | |
C4—O1—C7 | 112.45 (17) | N2—C10—C9 | 125.34 (19) |
C14—O3—C15 | 117.11 (18) | N2—C10—H10 | 117.3 |
C3—N1—H1N1 | 114.2 (16) | C9—C10—H10 | 117.3 |
C3—N1—H2N1 | 113.3 (18) | N2—C11—C13 | 117.9 (2) |
H1N1—N1—H2N1 | 112 (2) | N2—C11—C12 | 118.3 (2) |
C10—N2—C5 | 119.16 (17) | C13—C11—C12 | 60.20 (17) |
C10—N2—C11 | 117.75 (17) | N2—C11—H11 | 116.3 |
C5—N2—C11 | 123.00 (15) | C13—C11—H11 | 116.3 |
C2—C1—C6 | 119.99 (19) | C12—C11—H11 | 116.3 |
C2—C1—H1 | 120.0 | C11—C12—C13 | 59.79 (16) |
C6—C1—H1 | 120.0 | C11—C12—H12A | 117.8 |
F1—C2—C1 | 120.05 (19) | C13—C12—H12A | 117.8 |
F1—C2—C3 | 117.01 (18) | C11—C12—H12B | 117.8 |
C1—C2—C3 | 122.9 (2) | C13—C12—H12B | 117.8 |
N1—C3—C4 | 121.6 (2) | H12A—C12—H12B | 114.9 |
N1—C3—C2 | 120.8 (2) | C11—C13—C12 | 60.01 (16) |
C4—C3—C2 | 117.47 (18) | C11—C13—H13A | 117.8 |
O1—C4—C3 | 116.36 (17) | C12—C13—H13A | 117.8 |
O1—C4—C5 | 122.29 (18) | C11—C13—H13B | 117.8 |
C3—C4—C5 | 121.36 (18) | C12—C13—H13B | 117.8 |
N2—C5—C4 | 122.81 (18) | H13A—C13—H13B | 114.9 |
N2—C5—C6 | 118.12 (17) | O4—C14—O3 | 122.4 (2) |
C4—C5—C6 | 119.06 (18) | O4—C14—C9 | 125.0 (2) |
C1—C6—C5 | 119.07 (18) | O3—C14—C9 | 112.52 (18) |
C1—C6—C8 | 118.85 (18) | O3—C15—C16 | 108.7 (2) |
C5—C6—C8 | 121.99 (18) | O3—C15—H15A | 109.9 |
O1—C7—H7A | 109.5 | C16—C15—H15A | 109.9 |
O1—C7—H7B | 109.5 | O3—C15—H15B | 109.9 |
H7A—C7—H7B | 109.5 | C16—C15—H15B | 109.9 |
O1—C7—H7C | 109.5 | H15A—C15—H15B | 108.3 |
H7A—C7—H7C | 109.5 | C15—C16—H16A | 109.5 |
H7B—C7—H7C | 109.5 | C15—C16—H16B | 109.5 |
O2—C8—C9 | 124.20 (18) | H16A—C16—H16B | 109.5 |
O2—C8—C6 | 120.70 (19) | C15—C16—H16C | 109.5 |
C9—C8—C6 | 115.09 (17) | H16A—C16—H16C | 109.5 |
C10—C9—C8 | 119.22 (18) | H16B—C16—H16C | 109.5 |
C10—C9—C14 | 119.2 (2) | H1W—O1W—H2W | 107 (3) |
C8—C9—C14 | 121.54 (18) | | |
Hydrogen-bond geometry (Å, º) top D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N1···O1Wi | 0.91 (3) | 2.15 (3) | 2.930 (3) | 143 (2) |
N1—H2N1···O4ii | 0.85 (3) | 2.33 (3) | 3.061 (3) | 144 (2) |
O1W—H1W···O2iii | 0.84 (3) | 2.13 (3) | 2.916 (3) | 155 (3) |
O1W—H2W···O2 | 0.91 (3) | 1.96 (3) | 2.864 (3) | 171 (3) |
Symmetry codes: (i) −x+1, −y+1, −z+2; (ii) x, y, z+1; (iii) −x+1, −y+1, −z+1. |
Experimental details
Crystal data |
Chemical formula | C16H17FN2O4·H2O |
Mr | 338.33 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 291 |
a, b, c (Å) | 10.096 (4), 14.699 (5), 11.028 (6) |
β (°) | 94.26 (4) |
V (Å3) | 1632.0 (12) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.11 |
Crystal size (mm) | 0.45 × 0.42 × 0.39 |
|
Data collection |
Diffractometer | Enraf–Nonius CAD-4 diffractometer |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 3157, 3009, 1741 |
Rint | 0.007 |
(sin θ/λ)max (Å−1) | 0.604 |
|
Refinement |
R[F2 > 2σ(F2)], wR(F2), S | 0.043, 0.125, 1.04 |
No. of reflections | 3009 |
No. of parameters | 235 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.20, −0.19 |
Hydrogen-bond geometry (Å, º) top D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N1···O1Wi | 0.91 (3) | 2.15 (3) | 2.930 (3) | 143 (2) |
N1—H2N1···O4ii | 0.85 (3) | 2.33 (3) | 3.061 (3) | 144 (2) |
O1W—H1W···O2iii | 0.84 (3) | 2.13 (3) | 2.916 (3) | 155 (3) |
O1W—H2W···O2 | 0.91 (3) | 1.96 (3) | 2.864 (3) | 171 (3) |
Symmetry codes: (i) −x+1, −y+1, −z+2; (ii) x, y, z+1; (iii) −x+1, −y+1, −z+1. |
References
Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565. CrossRef IUCr Journals Google Scholar
Fujita, M. & Chiba, K. (1998). Chem. Pharm. Bull. 46, 631–638. Web of Science CrossRef CAS PubMed Google Scholar
Gabe, E. J., Le Page, Y., Charland, J.-P., Lee, F. L. & White, P. S. (1989). J. Appl. Cryst. 22, 384–387. CrossRef CAS Web of Science IUCr Journals Google Scholar
Gabe, E. J. & White, P. S. (1993). DIFRAC. American Crystallographic Association Pittsburgh Meeting Abstract PA 104. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
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 | CRYSTALLOGRAPHIC COMMUNICATIONS |
ISSN: 2056-9890
Open

access
Quinolone antibacterials were found several decades ago, and some excellent antibacterials have been developed and used widely now (Fujita & Chiba, 1998). An interest in search of more potent antibacterial agents led us to design and synthesis a new type of quinoline derivatives. The title compound is one of the key intermediates and we report here its crystal structure.
The pyridinone ring is planar to within ±0.057 (2) Å (Fig. 1). The dihedral angle between the pyridine and benzene rings is 5.77 (9)°, and that between the pyridine and carboxylate plane is 15.5 (1)°. In the crystal structure, the molecules are linked into a ribbon like structure along the c axis (Fig. 2) by N—H···O and O—H···O hydrogen bonds (Table 1).