organic compounds
Redetermination at 113 K of 2,2-tetramethylene-1,2-dihydroquinazolin-4(3H)-one
aSchool of Chemical Engineering and the Environment, Beijing Institute of Technology, Beijing 100081, People's Republic of China
*Correspondence e-mail: jrli@bit.edu.cn
The title compound {systematic name: spiro[cyclopentane-1,2′(1′H)-quinazolin]-4′(3′H)-one]}, C12H14N2O, has been reported previously [Klemm, Weakley, Gilbertson & Song (1998). J. Heterocycl Chem. 35, 1269–1273]. Its structure has been redetermined at 113 K with greater precision for all data. The molecule is built up from two fused six-membered rings and one five-membered ring linked through a spiro C atom. The pyrimidine ring has an and the cyclopentane ring adopts a distorted boat form. There are intermolecular N—H⋯O hydrogen bonds, which form a two-dimensional sheet parallel to the (001) plane.
Related literature
For related literature, see: Bernstein et al. (1995); Cremer & Pople (1975); Etter et al. (1990); Shi et al. (2004); Summers et al. (1986).
Experimental
Crystal data
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Refinement
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Data collection: CrystalClear (Rigaku, 2004); cell CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEPIII (Burnett & Johnson, 1996), ORTEP-3 for Windows (Farrugia, 1997) and CAMERON (Watkin et al., 1993); software used to prepare material for publication: SHELXL97.
Supporting information
10.1107/S1600536807066706/dn2298sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536807066706/dn2298Isup2.hkl
2,2-Tetramethylene-1,2-dihydroquinazolin-4(3H)-one (I) was prepared from the reflux of 2-aminobenzonitrile (1 mmol) with cyclopentanone (1 mmol) in presence of zinc chloride (1.2 mmol) in 10 ml DMF for 1.5 h. Then the reaction mixture was cooled and quenched with water and the precipitate was separated by filtration. The filtration residue was dispersed into water and titrated to pH 12–13 by 20% sodium hydroxide. After filtration, the product was obtained in 70% yield by
(200–300 mesh silica gel, ethyl acetate–petroleum with 1:2).The single-crystal of (I) was cultured from a solution of ethanol by slow evaporation at room temperature.
Spectra data: IR (KBr, cm-1): 3289, 3166, 2934, 1638, 1613, 1429; 1H NMR (DMSO-d6) δH: 1.75–2.08 (8H, m, C4H8), 6.07 (1H, s, NH), 6.73 (2H, dd, J=7.8, 8.0 Hz, ArH), 7.19 (1H, s, NH), 7.24–7.26 (1H, m, J=7.2 Hz, ArH), 7.73 (1H, d, J=8.0 Hz, ArH); 13C NMR (DMSO-d6) δC: 21.97 (2 C), 38.88 (2 C), 77.05, 114.32, 114.57, 116.53, 127.23, 132.99, 147.49, 163.42; MS (ESI): m/z (%) =203.1 (100) [M+H]+; C12H14N2O: calcd. C 71.26, H 6.98, N 13.85; found C 71.38, H 6.71, N 13.49.
All H atoms attached to C atoms were fixed geometrically and treated as riding with C—H = 0.93 Å (aromatic) or 0.97 Å (methylene) with Uiso(H) = 1.2Ueq(C or N). H atoms of NH group were located in difference Fourier maps and included in the subsequent
using restraints (N—H= 0.85 (1) Å) with Uiso(H) = 1.2Ueq(N).Data collection: CrystalClear (Rigaku, 2004); cell
CrystalClear (Rigaku, 2004); data reduction: CrystalClear (Rigaku, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEPIII (Burnett & Johnson, 1996), ORTEP-3 for Windows (Farrugia, 1997) and CAMERON (Watkin et al., 1993); software used to prepare material for publication: SHELXL97 (Sheldrick, 1997).C12H14N2O | F(000) = 864 |
Mr = 202.25 | Dx = 1.319 Mg m−3 |
Orthorhombic, Pbca | Mo Kα radiation, λ = 0.71070 Å |
Hall symbol: -P 2ac 2ab | Cell parameters from 5598 reflections |
a = 10.3872 (12) Å | θ = 2.6–27.9° |
b = 12.0252 (13) Å | µ = 0.09 mm−1 |
c = 16.3027 (19) Å | T = 113 K |
V = 2036.3 (4) Å3 | Prism, colorless |
Z = 8 | 0.26 × 0.24 × 0.16 mm |
Rigaku Saturn diffractometer | 2403 independent reflections |
Radiation source: rotating anode | 2200 reflections with I > 2σ(I) |
Confocal monochromator | Rint = 0.033 |
Detector resolution: 7.31 pixels mm-1 | θmax = 27.9°, θmin = 2.9° |
ω scans | h = −13→13 |
Absorption correction: multi-scan (Jacobson, 1998) | k = −15→15 |
Tmin = 0.972, Tmax = 0.984 | l = −21→21 |
23533 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.041 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.104 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.09 | w = 1/[σ2(Fo2) + (0.0476P)2 + 0.9123P] where P = (Fo2 + 2Fc2)/3 |
2403 reflections | (Δ/σ)max = 0.001 |
142 parameters | Δρmax = 0.31 e Å−3 |
2 restraints | Δρmin = −0.23 e Å−3 |
C12H14N2O | V = 2036.3 (4) Å3 |
Mr = 202.25 | Z = 8 |
Orthorhombic, Pbca | Mo Kα radiation |
a = 10.3872 (12) Å | µ = 0.09 mm−1 |
b = 12.0252 (13) Å | T = 113 K |
c = 16.3027 (19) Å | 0.26 × 0.24 × 0.16 mm |
Rigaku Saturn diffractometer | 2403 independent reflections |
Absorption correction: multi-scan (Jacobson, 1998) | 2200 reflections with I > 2σ(I) |
Tmin = 0.972, Tmax = 0.984 | Rint = 0.033 |
23533 measured reflections |
R[F2 > 2σ(F2)] = 0.041 | 2 restraints |
wR(F2) = 0.104 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.09 | Δρmax = 0.31 e Å−3 |
2403 reflections | Δρmin = −0.23 e Å−3 |
142 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.08554 (8) | 0.58043 (6) | 0.58072 (5) | 0.01704 (19) | |
N1 | 0.14762 (9) | 0.42225 (8) | 0.51639 (6) | 0.0162 (2) | |
H1 | 0.0821 (11) | 0.4272 (12) | 0.4846 (8) | 0.019* | |
N2 | 0.30566 (10) | 0.30494 (8) | 0.57191 (6) | 0.0176 (2) | |
H2 | 0.3437 (13) | 0.2417 (9) | 0.5745 (9) | 0.021* | |
C1 | 0.27524 (10) | 0.48724 (9) | 0.62879 (6) | 0.0149 (2) | |
C2 | 0.34067 (10) | 0.38442 (9) | 0.62795 (7) | 0.0155 (2) | |
C3 | 0.43548 (11) | 0.36400 (10) | 0.68791 (7) | 0.0189 (2) | |
H3 | 0.4778 | 0.2959 | 0.6891 | 0.023* | |
C4 | 0.46564 (11) | 0.44475 (10) | 0.74485 (7) | 0.0208 (3) | |
H4 | 0.5295 | 0.4308 | 0.7835 | 0.025* | |
C5 | 0.40171 (12) | 0.54737 (10) | 0.74554 (7) | 0.0210 (3) | |
H5 | 0.4232 | 0.6013 | 0.7840 | 0.025* | |
C6 | 0.30602 (11) | 0.56750 (9) | 0.68820 (7) | 0.0186 (2) | |
H6 | 0.2618 | 0.6347 | 0.6891 | 0.022* | |
C7 | 0.16430 (10) | 0.50191 (9) | 0.57324 (7) | 0.0144 (2) | |
C8 | 0.24515 (11) | 0.33881 (9) | 0.49553 (6) | 0.0148 (2) | |
C9 | 0.18435 (11) | 0.23692 (10) | 0.45265 (7) | 0.0182 (2) | |
H9A | 0.1703 | 0.1774 | 0.4918 | 0.022* | |
H9B | 0.1023 | 0.2568 | 0.4283 | 0.022* | |
C10 | 0.27944 (13) | 0.20002 (11) | 0.38614 (9) | 0.0300 (3) | |
H10A | 0.3038 | 0.1229 | 0.3942 | 0.036* | |
H10B | 0.2410 | 0.2075 | 0.3322 | 0.036* | |
C11 | 0.39717 (12) | 0.27571 (10) | 0.39391 (8) | 0.0229 (3) | |
H11A | 0.4620 | 0.2424 | 0.4290 | 0.027* | |
H11B | 0.4348 | 0.2906 | 0.3406 | 0.027* | |
C12 | 0.34353 (11) | 0.38216 (10) | 0.43211 (7) | 0.0195 (2) | |
H12A | 0.3019 | 0.4282 | 0.3911 | 0.023* | |
H12B | 0.4111 | 0.4248 | 0.4585 | 0.023* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0156 (4) | 0.0139 (4) | 0.0217 (4) | 0.0012 (3) | −0.0010 (3) | −0.0011 (3) |
N1 | 0.0137 (4) | 0.0154 (4) | 0.0194 (5) | 0.0023 (3) | −0.0038 (4) | −0.0026 (4) |
N2 | 0.0213 (5) | 0.0138 (5) | 0.0178 (5) | 0.0050 (4) | −0.0044 (4) | −0.0006 (4) |
C1 | 0.0145 (5) | 0.0152 (5) | 0.0149 (5) | −0.0015 (4) | 0.0004 (4) | 0.0010 (4) |
C2 | 0.0144 (5) | 0.0165 (5) | 0.0155 (5) | −0.0010 (4) | 0.0016 (4) | 0.0010 (4) |
C3 | 0.0180 (5) | 0.0210 (5) | 0.0178 (5) | 0.0034 (4) | 0.0003 (4) | 0.0027 (4) |
C4 | 0.0179 (5) | 0.0287 (6) | 0.0157 (5) | −0.0010 (5) | −0.0031 (4) | 0.0020 (5) |
C5 | 0.0231 (6) | 0.0220 (6) | 0.0180 (5) | −0.0051 (5) | −0.0032 (4) | −0.0020 (4) |
C6 | 0.0204 (6) | 0.0161 (5) | 0.0194 (6) | −0.0017 (4) | −0.0002 (4) | −0.0007 (4) |
C7 | 0.0140 (5) | 0.0132 (5) | 0.0159 (5) | −0.0015 (4) | 0.0018 (4) | 0.0015 (4) |
C8 | 0.0141 (5) | 0.0134 (5) | 0.0168 (5) | 0.0015 (4) | −0.0010 (4) | −0.0008 (4) |
C9 | 0.0164 (5) | 0.0171 (5) | 0.0212 (5) | −0.0009 (4) | −0.0007 (4) | −0.0035 (4) |
C10 | 0.0310 (7) | 0.0266 (7) | 0.0324 (7) | −0.0065 (5) | 0.0113 (6) | −0.0128 (5) |
C11 | 0.0196 (6) | 0.0256 (6) | 0.0235 (6) | 0.0013 (5) | 0.0037 (5) | −0.0038 (5) |
C12 | 0.0199 (6) | 0.0187 (6) | 0.0198 (5) | −0.0028 (4) | 0.0021 (4) | 0.0002 (4) |
O1—C7 | 1.2553 (13) | C5—H5 | 0.9300 |
N1—C7 | 1.3442 (14) | C6—H6 | 0.9300 |
N1—C8 | 1.4659 (14) | C8—C12 | 1.5443 (15) |
N1—H1 | 0.857 (9) | C8—C9 | 1.5456 (15) |
N2—C2 | 1.3712 (15) | C9—C10 | 1.5323 (17) |
N2—C8 | 1.4531 (14) | C9—H9A | 0.9700 |
N2—H2 | 0.857 (9) | C9—H9B | 0.9700 |
C1—C6 | 1.4041 (15) | C10—C11 | 1.5297 (17) |
C1—C2 | 1.4110 (15) | C10—H10A | 0.9700 |
C1—C7 | 1.4762 (15) | C10—H10B | 0.9700 |
C2—C3 | 1.4091 (16) | C11—C12 | 1.5287 (17) |
C3—C4 | 1.3794 (16) | C11—H11A | 0.9700 |
C3—H3 | 0.9300 | C11—H11B | 0.9700 |
C4—C5 | 1.4014 (17) | C12—H12A | 0.9700 |
C4—H4 | 0.9300 | C12—H12B | 0.9700 |
C5—C6 | 1.3857 (16) | ||
C7—N1—C8 | 123.96 (9) | N1—C8—C12 | 112.43 (9) |
C7—N1—H1 | 118.0 (9) | N2—C8—C9 | 110.01 (9) |
C8—N1—H1 | 117.1 (10) | N1—C8—C9 | 111.42 (9) |
C2—N2—C8 | 119.36 (9) | C12—C8—C9 | 103.60 (9) |
C2—N2—H2 | 117.6 (10) | C10—C9—C8 | 106.63 (9) |
C8—N2—H2 | 119.3 (10) | C10—C9—H9A | 110.4 |
C6—C1—C2 | 119.95 (10) | C8—C9—H9A | 110.4 |
C6—C1—C7 | 121.25 (10) | C10—C9—H9B | 110.4 |
C2—C1—C7 | 118.35 (10) | C8—C9—H9B | 110.4 |
N2—C2—C3 | 121.74 (10) | H9A—C9—H9B | 108.6 |
N2—C2—C1 | 119.31 (10) | C11—C10—C9 | 106.53 (10) |
C3—C2—C1 | 118.85 (10) | C11—C10—H10A | 110.4 |
C4—C3—C2 | 120.19 (11) | C9—C10—H10A | 110.4 |
C4—C3—H3 | 119.9 | C11—C10—H10B | 110.4 |
C2—C3—H3 | 119.9 | C9—C10—H10B | 110.4 |
C3—C4—C5 | 121.17 (11) | H10A—C10—H10B | 108.6 |
C3—C4—H4 | 119.4 | C12—C11—C10 | 103.92 (10) |
C5—C4—H4 | 119.4 | C12—C11—H11A | 111.0 |
C6—C5—C4 | 119.23 (11) | C10—C11—H11A | 111.0 |
C6—C5—H5 | 120.4 | C12—C11—H11B | 111.0 |
C4—C5—H5 | 120.4 | C10—C11—H11B | 111.0 |
C5—C6—C1 | 120.57 (11) | H11A—C11—H11B | 109.0 |
C5—C6—H6 | 119.7 | C11—C12—C8 | 103.37 (9) |
C1—C6—H6 | 119.7 | C11—C12—H12A | 111.1 |
O1—C7—N1 | 121.26 (10) | C8—C12—H12A | 111.1 |
O1—C7—C1 | 122.62 (10) | C11—C12—H12B | 111.1 |
N1—C7—C1 | 116.01 (9) | C8—C12—H12B | 111.1 |
N2—C8—N1 | 106.98 (9) | H12A—C12—H12B | 109.1 |
N2—C8—C12 | 112.46 (9) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1i | 0.86 (1) | 2.04 (1) | 2.8936 (12) | 171 (1) |
N2—H2···O1ii | 0.86 (1) | 2.08 (1) | 2.9303 (13) | 173 (1) |
Symmetry codes: (i) −x, −y+1, −z+1; (ii) −x+1/2, y−1/2, z. |
Experimental details
Crystal data | |
Chemical formula | C12H14N2O |
Mr | 202.25 |
Crystal system, space group | Orthorhombic, Pbca |
Temperature (K) | 113 |
a, b, c (Å) | 10.3872 (12), 12.0252 (13), 16.3027 (19) |
V (Å3) | 2036.3 (4) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 0.09 |
Crystal size (mm) | 0.26 × 0.24 × 0.16 |
Data collection | |
Diffractometer | Rigaku Saturn diffractometer |
Absorption correction | Multi-scan (Jacobson, 1998) |
Tmin, Tmax | 0.972, 0.984 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 23533, 2403, 2200 |
Rint | 0.033 |
(sin θ/λ)max (Å−1) | 0.657 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.041, 0.104, 1.09 |
No. of reflections | 2403 |
No. of parameters | 142 |
No. of restraints | 2 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.31, −0.23 |
Computer programs: CrystalClear (Rigaku, 2004), SHELXS97 (Sheldrick, 1997), SHELXL97 (Sheldrick, 1997), ORTEPIII (Burnett & Johnson, 1996), ORTEP-3 for Windows (Farrugia, 1997) and CAMERON (Watkin et al., 1993).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1i | 0.857 (9) | 2.043 (9) | 2.8936 (12) | 171.2 (14) |
N2—H2···O1ii | 0.857 (9) | 2.077 (9) | 2.9303 (13) | 173.3 (14) |
Symmetry codes: (i) −x, −y+1, −z+1; (ii) −x+1/2, y−1/2, z. |
Acknowledgements
We thank Beijing Institute of Technology for financial support and Naikai University for the X-ray diffraction analysis.
References
Bernstein, J., Davis, R. E., Shimoni, L. & Chang, N.-L. (1995). Angew. Chem. Int. Ed. Engl. 34, 1555–1573. CrossRef CAS Web of Science Google Scholar
Burnett, M. N. & Johnson, C. K. (1996). ORTEPIII. Report ORNL-6895. Oak Ridge National Laboratory, Tennessee, USA. Google Scholar
Cremer, D. & Pople, J. A. (1975). J. Am. Chem. Soc. 97, 1354–1358. CrossRef CAS Web of Science Google Scholar
Etter, M. C., MacDonald, J. C. & Bernstein, J. (1990). Acta Cryst. B46, 256–262. CrossRef CAS Web of Science IUCr Journals Google Scholar
Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565. CrossRef IUCr Journals Google Scholar
Jacobson, R. (1998). Private communication to Rigaku Corporation, Tokyo, Japan. Google Scholar
Klemm, L. H., Weakley, T. J. R., Gilbertson, R. D. & Song, Y. H. (1998). J. Heterocycl. Chem. 35, 1269–1273. CrossRef CAS Google Scholar
Rigaku (2004). CrystalClear. Version 1.36. Rigaku Corporation, Tokyo, Japan. Google Scholar
Sheldrick, G. M. (1997). SHELXL97 and SHELXS97. University of Göttingen, Germany. Google Scholar
Shi, D. Q., Rong, L. C., Wang, J. X., Wang, X. S., Tu, S. J. & Hu, H. W. (2004). Chem. J. Chin. Univ. 25, 2051–2053. CAS Google Scholar
Summers, W. K., Majovski, L. V., Marsh, G. M., Tachiki, K. & Kling, A. (1986). N. Engl. J. Med. 315, 1241–1245. CrossRef CAS PubMed Web of Science Google Scholar
Watkin, D. J., Prout, C. K. & Pearce, L. J. (1993). CAMERON. Chemical Crystallography Laboratory, University of Oxford, England. Google Scholar
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When we used 2-aminobenzonitrile and cyclopentanone in presence of zinc chloride to synthesize tacrine (Summers et al., 1986) derivative, the unexpected spiro compound (I) (Scheme 1), was obtained. Its structure has been already reported (Klemm et al., 1998), however, as we were investigating the molecular and supramolecular architecture of related compounds, its structural redetermination at lower temperature (113 K) has been undertaken
The molecular structure of (I) is built up with two fused six membered ring and a five membered ring linked through a spiro C atom (Fig. 1). The pyrimidine ring has an envelope conformation with puckering parameters Q=0.3821 (11) Å, Θ= 115.21 (16)° and ϕ= 108.70 (19)° (Cremer & Pople, 1975). The five-membered ring displays an enveloppe conformation at C12 with puckering parameters Q(2)= O.3925 (15)Å and ϕ(2)= 319.8 (2)\%. The geometry of the fused rings compares well with the related 3-phenyl-1,2-dihydroquinazolin-4(3H)-one derivative (Shi et al., 2004).
The crystal structure of (I) is stabilized by the interplay of N—H···O interactions. The two N—H groups form N—H···O hydrogen bonds with the ketone O atom of symmetry related molecules building a R22(8) graph set motif (Etter et al., 1990; Bernstein et al., 1995). Those motifs formed with N—H···O hydrogen bonds link to each other building a two dimensionnal network parallel to the (0 0 1) plane (Fig. 2, Table 1).