organic compounds
L-Lysinium trifluoroacetate
aState Key Laboratory of Crystal Materials, Institute of Crystal Materials, Shandong University, Jinan 250100, People's Republic of China
*Correspondence e-mail: sunzhihua@icm.sdu.edu.cn
Ions of the title compound, C6H15N2O2+·C2F3O2−, a new organic nonlinear optical crystal, are linked by N—H⋯O hydrogen-bonding interactions. Both the amino groups of the L-lysinium cation are protonated. A three-dimensional network of hydrogen bonds is observed, forming a closed ring. Intermolecular N—H⋯O hydrogen bonds involving L-lysinium cations and trifluoroacetate anions link the ions into extended chains which run parallel to the [010] direction. The F atoms of the trifluoroacetate anion are disordered over two sites with site occupancies of 0.423 (18) and 0.577 (18). The consists of two cations and two anions.
Related literature
For related literature, see: Babu, Sethuraman, Gopalakrishnan & Ramasamy (2006); Babu, Sethuraman, Vijayan et al. (2006); Chandra et al. (1998); Debrus et al. (2005); Drozd & Marchewka (2006); Kurtz & Perry (1968); Marchewka et al. (2003); Prasad & Vijayan (1993); Pratap et al. (2000); Suresh et al. (1994); Xu et al. (1983); Yokotani et al. (1989).
Experimental
Crystal data
|
Refinement
|
Data collection: APEX2 (Bruker, 2005); cell APEX2; data reduction: APEX2; program(s) used to solve structure: SIR97 (Altomare et al., 1999); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2000); software used to prepare material for publication: WinGX (Farrugia, 1999).
Supporting information
10.1107/S1600536807068791/gw2034sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536807068791/gw2034Isup2.hkl
High optical-quality crystals used for X-ray analysis were obtained from an aqueous solution of L-lysine and trifluoroacetate acid, mixed in 1:1 molar ratio, after several days at 313 K.
The
was inconclusive due to the lack of significant anomalous scatterer. The F atoms of the CF3 group are probably disordered.All atoms of the disordered group were refined with restrained bond distance and displacemens to improve convergence. Occupancy of both positions of disordered group was refined and converged to 0.577 (18) and 0.423 (18) respectively. H atoms attached to C and N atoms were positioned geometrically and treated as riding, with N—H = 0.89%A and C—H = 0.97 or 0.98%A, and their isotropic displacement parameters were set to 1.2 times the equivalent displacement parameter of their parent atoms.
Data collection: APEX2 (Bruker, 2005); cell
APEX2 (Bruker, 2005); data reduction: APEX2 (Bruker, 2005); program(s) used to solve structure: SIR97 (Altomare et al., 1999); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: SHELXTL (Sheldrick, 2000); software used to prepare material for publication: WinGX (Farrugia, 1999).Fig. 1. The molecular structure of (I), showing 30% probability displacement ellipsoids. | |
Fig. 2. The crystal packing of (I), viewed along the a axis. Hydrogen bonds are shown as dashed lines. |
C6H15N2O2+·C2F3O2− | F(000) = 544 |
Mr = 260.22 | Dx = 1.516 Mg m−3 |
Monoclinic, P21 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2yb | Cell parameters from 3919 reflections |
a = 5.6985 (2) Å | θ = 3.0–27.3° |
b = 23.5430 (8) Å | µ = 0.15 mm−1 |
c = 8.5007 (3) Å | T = 293 K |
β = 91.630 (2)° | Prism, colourless |
V = 1139.99 (7) Å3 | 0.35 × 0.29 × 0.12 mm |
Z = 4 |
Bruker APEXII CCD area-detector diffractometer | 2674 independent reflections |
Radiation source: fine-focus sealed tube | 2470 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.023 |
ϕ and ω scans | θmax = 27.5°, θmin = 1.7° |
Absorption correction: multi-scan (APEX2; Bruker, 2005) | h = −5→7 |
Tmin = 0.95, Tmax = 0.98 | k = −30→25 |
8405 measured reflections | l = −11→10 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.044 | H-atom parameters constrained |
wR(F2) = 0.122 | w = 1/[σ2(Fo2) + (0.0705P)2 + 0.3205P] where P = (Fo2 + 2Fc2)/3 |
S = 1.07 | (Δ/σ)max < 0.001 |
2674 reflections | Δρmax = 0.44 e Å−3 |
340 parameters | Δρmin = −0.23 e Å−3 |
43 restraints | Extinction correction: SHELXL97 (Sheldrick, 1997), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.017 (4) |
C6H15N2O2+·C2F3O2− | V = 1139.99 (7) Å3 |
Mr = 260.22 | Z = 4 |
Monoclinic, P21 | Mo Kα radiation |
a = 5.6985 (2) Å | µ = 0.15 mm−1 |
b = 23.5430 (8) Å | T = 293 K |
c = 8.5007 (3) Å | 0.35 × 0.29 × 0.12 mm |
β = 91.630 (2)° |
Bruker APEXII CCD area-detector diffractometer | 2674 independent reflections |
Absorption correction: multi-scan (APEX2; Bruker, 2005) | 2470 reflections with I > 2σ(I) |
Tmin = 0.95, Tmax = 0.98 | Rint = 0.023 |
8405 measured reflections |
R[F2 > 2σ(F2)] = 0.044 | 43 restraints |
wR(F2) = 0.122 | H-atom parameters constrained |
S = 1.07 | Δρmax = 0.44 e Å−3 |
2674 reflections | Δρmin = −0.23 e Å−3 |
340 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
C1 | 0.2035 (7) | 0.19654 (15) | 0.9377 (4) | 0.0386 (7) | |
H1A | 0.0417 | 0.2088 | 0.9236 | 0.046* | |
H1B | 0.2078 | 0.1557 | 0.9233 | 0.046* | |
C2 | 0.3517 (7) | 0.22473 (15) | 0.8138 (4) | 0.0394 (8) | |
H2A | 0.2868 | 0.2149 | 0.7106 | 0.047* | |
H2B | 0.5091 | 0.2091 | 0.8218 | 0.047* | |
C3 | 0.3684 (6) | 0.28929 (15) | 0.8256 (4) | 0.0340 (7) | |
H3A | 0.4339 | 0.2994 | 0.9284 | 0.041* | |
H3B | 0.4753 | 0.3029 | 0.7473 | 0.041* | |
C4 | 0.1328 (6) | 0.31898 (14) | 0.8015 (4) | 0.0320 (7) | |
H4A | 0.0210 | 0.3020 | 0.8715 | 0.038* | |
H4B | 0.0763 | 0.3124 | 0.6944 | 0.038* | |
C5 | 0.1405 (5) | 0.38324 (12) | 0.8314 (3) | 0.0260 (6) | |
H5 | 0.1926 | 0.3898 | 0.9408 | 0.031* | |
C6 | −0.1062 (5) | 0.40846 (13) | 0.8071 (4) | 0.0274 (6) | |
C7 | 0.8434 (7) | 0.56316 (15) | 0.4189 (4) | 0.0417 (8) | |
H7A | 1.0015 | 0.5512 | 0.3955 | 0.050* | |
H7B | 0.8324 | 0.6036 | 0.3988 | 0.050* | |
C8 | 0.6728 (7) | 0.53266 (16) | 0.3112 (4) | 0.0415 (8) | |
H8A | 0.7097 | 0.5418 | 0.2034 | 0.050* | |
H8B | 0.5164 | 0.5470 | 0.3296 | 0.050* | |
C9 | 0.6694 (6) | 0.46783 (15) | 0.3289 (4) | 0.0348 (7) | |
H9A | 0.6187 | 0.4584 | 0.4337 | 0.042* | |
H9B | 0.5552 | 0.4522 | 0.2540 | 0.042* | |
C10 | 0.9055 (6) | 0.44005 (14) | 0.3031 (4) | 0.0337 (7) | |
H10A | 1.0215 | 0.4572 | 0.3741 | 0.040* | |
H10B | 0.9523 | 0.4478 | 0.1964 | 0.040* | |
C11 | 0.9066 (5) | 0.37617 (13) | 0.3288 (3) | 0.0266 (6) | |
H11 | 0.8574 | 0.3684 | 0.4362 | 0.032* | |
C12 | 1.1556 (5) | 0.35209 (13) | 0.3097 (4) | 0.0278 (6) | |
C13 | 0.2120 (7) | 0.5547 (2) | 0.9656 (5) | 0.0490 (9) | |
C14 | 0.3551 (6) | 0.56626 (15) | 0.8184 (5) | 0.0399 (8) | |
C15 | 0.1624 (6) | 0.69327 (14) | 0.6885 (4) | 0.0332 (7) | |
C16 | 0.3002 (6) | 0.69936 (14) | 0.5366 (4) | 0.0463 (9) | |
F1 | 0.2737 (7) | 0.50496 (14) | 1.0285 (4) | 0.0803 (10) | |
F2 | −0.0167 (5) | 0.5514 (2) | 0.9324 (3) | 0.0847 (11) | |
F3 | 0.2391 (8) | 0.59289 (17) | 1.0789 (4) | 0.0907 (12) | |
N1 | 0.3086 (4) | 0.41146 (12) | 0.7262 (3) | 0.0286 (5) | |
H1C | 0.4547 | 0.4054 | 0.7622 | 0.043* | |
H1D | 0.2802 | 0.4486 | 0.7238 | 0.043* | |
H1E | 0.2917 | 0.3973 | 0.6295 | 0.043* | |
N2 | 0.2873 (5) | 0.21051 (13) | 1.0996 (3) | 0.0344 (6) | |
H2C | 0.4418 | 0.2052 | 1.1077 | 0.052* | |
H2D | 0.2162 | 0.1881 | 1.1678 | 0.052* | |
H2E | 0.2544 | 0.2466 | 1.1204 | 0.052* | |
N3 | 0.7381 (4) | 0.34760 (12) | 0.2158 (3) | 0.0299 (5) | |
H3C | 0.5918 | 0.3535 | 0.2461 | 0.045* | |
H3D | 0.7672 | 0.3105 | 0.2144 | 0.045* | |
H3E | 0.7550 | 0.3619 | 0.1199 | 0.045* | |
N4 | 0.8017 (6) | 0.55253 (14) | 0.5879 (4) | 0.0403 (7) | |
H4C | 0.6511 | 0.5587 | 0.6072 | 0.060* | |
H4D | 0.8906 | 0.5759 | 0.6465 | 0.060* | |
H4E | 0.8383 | 0.5167 | 0.6113 | 0.060* | |
O1 | 0.3110 (5) | 0.53384 (12) | 0.7075 (4) | 0.0461 (6) | |
O2 | 0.4978 (6) | 0.60529 (15) | 0.8282 (5) | 0.0703 (10) | |
O3 | 0.0036 (5) | 0.65772 (12) | 0.6844 (4) | 0.0475 (7) | |
O4 | 0.2218 (5) | 0.72643 (11) | 0.7963 (3) | 0.0406 (6) | |
O5 | 1.3033 (4) | 0.36431 (13) | 0.4147 (3) | 0.0441 (6) | |
O6 | 1.1940 (4) | 0.32512 (12) | 0.1873 (3) | 0.0418 (6) | |
O7 | −0.1433 (4) | 0.43812 (12) | 0.6875 (3) | 0.0411 (6) | |
O8 | −0.2560 (4) | 0.39525 (12) | 0.9057 (3) | 0.0401 (6) | |
F4 | 0.240 (3) | 0.6636 (6) | 0.4230 (12) | 0.090 (4) | 0.423 (18) |
F5 | 0.5288 (10) | 0.6952 (6) | 0.5549 (13) | 0.069 (3) | 0.423 (18) |
F6 | 0.263 (2) | 0.7512 (4) | 0.4766 (16) | 0.084 (3) | 0.423 (18) |
F4' | 0.3461 (18) | 0.6491 (2) | 0.4707 (10) | 0.078 (2) | 0.577 (18) |
F5' | 0.5098 (11) | 0.7221 (5) | 0.5632 (9) | 0.074 (2) | 0.577 (18) |
F6' | 0.1885 (16) | 0.7293 (6) | 0.4287 (9) | 0.092 (3) | 0.577 (18) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.049 (2) | 0.0265 (16) | 0.0408 (18) | −0.0012 (14) | 0.0043 (15) | 0.0011 (14) |
C2 | 0.054 (2) | 0.0284 (17) | 0.0366 (17) | 0.0102 (15) | 0.0107 (15) | 0.0013 (13) |
C3 | 0.0359 (17) | 0.0298 (16) | 0.0368 (16) | 0.0041 (13) | 0.0077 (13) | 0.0052 (13) |
C4 | 0.0374 (17) | 0.0214 (14) | 0.0371 (16) | −0.0017 (12) | −0.0037 (12) | 0.0021 (12) |
C5 | 0.0241 (13) | 0.0260 (15) | 0.0277 (13) | −0.0013 (10) | −0.0030 (10) | 0.0025 (11) |
C6 | 0.0241 (13) | 0.0240 (14) | 0.0337 (15) | −0.0008 (10) | −0.0033 (11) | −0.0007 (12) |
C7 | 0.054 (2) | 0.0270 (17) | 0.0443 (19) | −0.0018 (15) | 0.0063 (15) | 0.0009 (14) |
C8 | 0.056 (2) | 0.0327 (18) | 0.0352 (17) | 0.0103 (16) | −0.0063 (15) | 0.0015 (13) |
C9 | 0.0388 (17) | 0.0270 (15) | 0.0382 (16) | 0.0024 (13) | −0.0057 (13) | −0.0033 (13) |
C10 | 0.0402 (17) | 0.0253 (16) | 0.0358 (16) | −0.0003 (13) | 0.0046 (13) | −0.0020 (13) |
C11 | 0.0270 (13) | 0.0271 (15) | 0.0260 (13) | 0.0023 (11) | 0.0037 (10) | 0.0009 (11) |
C12 | 0.0258 (13) | 0.0253 (14) | 0.0325 (15) | 0.0023 (11) | 0.0054 (11) | 0.0018 (11) |
C13 | 0.052 (2) | 0.050 (2) | 0.044 (2) | 0.0021 (18) | −0.0073 (16) | −0.0040 (18) |
C14 | 0.0298 (16) | 0.0286 (18) | 0.061 (2) | 0.0016 (13) | −0.0010 (14) | 0.0052 (16) |
C15 | 0.0340 (16) | 0.0242 (15) | 0.0417 (18) | 0.0024 (13) | 0.0043 (13) | −0.0025 (13) |
C16 | 0.050 (2) | 0.050 (2) | 0.0390 (19) | −0.0059 (17) | 0.0059 (16) | 0.0046 (17) |
F1 | 0.111 (3) | 0.065 (2) | 0.0658 (19) | 0.0023 (18) | 0.0032 (17) | 0.0254 (16) |
F2 | 0.0436 (13) | 0.150 (3) | 0.0610 (16) | −0.0034 (19) | 0.0068 (12) | 0.009 (2) |
F3 | 0.116 (3) | 0.095 (3) | 0.0607 (18) | 0.012 (2) | −0.0090 (19) | −0.0309 (19) |
N1 | 0.0241 (11) | 0.0268 (13) | 0.0349 (13) | 0.0002 (10) | −0.0007 (10) | 0.0027 (10) |
N2 | 0.0363 (15) | 0.0318 (15) | 0.0356 (14) | 0.0077 (11) | 0.0082 (11) | 0.0073 (11) |
N3 | 0.0240 (11) | 0.0253 (12) | 0.0404 (14) | 0.0009 (10) | 0.0021 (10) | 0.0007 (10) |
N4 | 0.0505 (17) | 0.0314 (15) | 0.0386 (15) | 0.0006 (13) | −0.0038 (12) | −0.0031 (12) |
O1 | 0.0524 (15) | 0.0326 (14) | 0.0534 (16) | 0.0008 (11) | 0.0057 (12) | 0.0023 (12) |
O2 | 0.0528 (18) | 0.0406 (17) | 0.117 (3) | −0.0165 (14) | 0.0025 (19) | 0.0017 (19) |
O3 | 0.0430 (14) | 0.0419 (15) | 0.0583 (16) | −0.0118 (11) | 0.0129 (12) | −0.0149 (13) |
O4 | 0.0426 (13) | 0.0324 (13) | 0.0471 (14) | −0.0041 (10) | 0.0063 (11) | −0.0083 (11) |
O5 | 0.0300 (12) | 0.0520 (16) | 0.0497 (15) | 0.0023 (11) | −0.0063 (10) | −0.0119 (12) |
O6 | 0.0397 (13) | 0.0486 (15) | 0.0372 (12) | 0.0141 (11) | 0.0048 (10) | −0.0094 (11) |
O7 | 0.0385 (13) | 0.0448 (15) | 0.0396 (13) | 0.0084 (11) | −0.0048 (10) | 0.0129 (11) |
O8 | 0.0269 (11) | 0.0480 (15) | 0.0454 (13) | 0.0013 (10) | 0.0009 (9) | 0.0113 (12) |
F4 | 0.096 (5) | 0.103 (6) | 0.070 (5) | −0.027 (4) | 0.016 (4) | −0.021 (4) |
F5 | 0.055 (4) | 0.088 (5) | 0.066 (4) | 0.017 (3) | 0.016 (3) | 0.017 (4) |
F6 | 0.102 (5) | 0.078 (5) | 0.071 (5) | 0.002 (4) | 0.016 (4) | 0.030 (4) |
F4' | 0.100 (4) | 0.075 (3) | 0.063 (3) | 0.020 (3) | 0.037 (3) | −0.010 (3) |
F5' | 0.061 (3) | 0.094 (5) | 0.068 (3) | −0.027 (3) | 0.023 (2) | −0.007 (3) |
F6' | 0.095 (4) | 0.117 (5) | 0.064 (3) | 0.023 (4) | −0.004 (3) | 0.036 (3) |
C1—N2 | 1.481 (5) | C11—C12 | 1.541 (4) |
C1—C2 | 1.521 (5) | C11—H11 | 0.9800 |
C1—H1A | 0.9700 | C12—O5 | 1.243 (4) |
C1—H1B | 0.9700 | C12—O6 | 1.244 (4) |
C2—C3 | 1.526 (5) | C13—F3 | 1.324 (5) |
C2—H2A | 0.9700 | C13—F2 | 1.328 (5) |
C2—H2B | 0.9700 | C13—F1 | 1.330 (5) |
C3—C4 | 1.522 (5) | C13—C14 | 1.537 (6) |
C3—H3A | 0.9700 | C14—O2 | 1.228 (5) |
C3—H3B | 0.9700 | C14—O1 | 1.234 (5) |
C4—C5 | 1.534 (4) | C15—O3 | 1.232 (4) |
C4—H4A | 0.9700 | C15—O4 | 1.243 (4) |
C4—H4B | 0.9700 | C15—C16 | 1.537 (5) |
C5—N1 | 1.486 (4) | C16—F6' | 1.308 (5) |
C5—C6 | 1.535 (4) | C16—F5 | 1.312 (5) |
C5—H5 | 0.9800 | C16—F4 | 1.319 (5) |
C6—O7 | 1.247 (4) | C16—F5' | 1.323 (5) |
C6—O8 | 1.253 (4) | C16—F6 | 1.337 (5) |
C7—N4 | 1.484 (5) | C16—F4' | 1.338 (5) |
C7—C8 | 1.500 (5) | N1—H1C | 0.8900 |
C7—H7A | 0.9700 | N1—H1D | 0.8900 |
C7—H7B | 0.9700 | N1—H1E | 0.8900 |
C8—C9 | 1.534 (5) | N2—H2C | 0.8900 |
C8—H8A | 0.9700 | N2—H2D | 0.8900 |
C8—H8B | 0.9700 | N2—H2E | 0.8900 |
C9—C10 | 1.518 (5) | N3—H3C | 0.8900 |
C9—H9A | 0.9700 | N3—H3D | 0.8900 |
C9—H9B | 0.9700 | N3—H3E | 0.8900 |
C10—C11 | 1.520 (5) | N4—H4C | 0.8900 |
C10—H10A | 0.9700 | N4—H4D | 0.8900 |
C10—H10B | 0.9700 | N4—H4E | 0.8900 |
C11—N3 | 1.498 (4) | ||
N2—C1—C2 | 112.0 (3) | C12—C11—H11 | 108.6 |
N2—C1—H1A | 109.2 | O5—C12—O6 | 126.0 (3) |
C2—C1—H1A | 109.2 | O5—C12—C11 | 116.5 (3) |
N2—C1—H1B | 109.2 | O6—C12—C11 | 117.4 (3) |
C2—C1—H1B | 109.2 | F3—C13—F2 | 106.7 (4) |
H1A—C1—H1B | 107.9 | F3—C13—F1 | 106.3 (4) |
C1—C2—C3 | 115.1 (3) | F2—C13—F1 | 106.3 (4) |
C1—C2—H2A | 108.5 | F3—C13—C14 | 114.7 (4) |
C3—C2—H2A | 108.5 | F2—C13—C14 | 112.2 (3) |
C1—C2—H2B | 108.5 | F1—C13—C14 | 110.0 (4) |
C3—C2—H2B | 108.5 | O2—C14—O1 | 129.4 (4) |
H2A—C2—H2B | 107.5 | O2—C14—C13 | 116.3 (4) |
C4—C3—C2 | 113.3 (3) | O1—C14—C13 | 114.3 (3) |
C4—C3—H3A | 108.9 | O3—C15—O4 | 129.2 (3) |
C2—C3—H3A | 108.9 | O3—C15—C16 | 115.6 (3) |
C4—C3—H3B | 108.9 | O4—C15—C16 | 115.2 (3) |
C2—C3—H3B | 108.9 | F6'—C16—F5 | 125.8 (6) |
H3A—C3—H3B | 107.7 | F6'—C16—F4 | 73.7 (7) |
C3—C4—C5 | 114.2 (3) | F5—C16—F4 | 106.1 (7) |
C3—C4—H4A | 108.7 | F6'—C16—F5' | 108.7 (6) |
C5—C4—H4A | 108.7 | F5—C16—F5' | 28.5 (5) |
C3—C4—H4B | 108.7 | F4—C16—F5' | 126.8 (6) |
C5—C4—H4B | 108.7 | F6'—C16—F6 | 34.0 (5) |
H4A—C4—H4B | 107.6 | F5—C16—F6 | 105.1 (7) |
N1—C5—C4 | 110.9 (2) | F4—C16—F6 | 105.5 (8) |
N1—C5—C6 | 110.5 (2) | F5'—C16—F6 | 80.1 (7) |
C4—C5—C6 | 109.7 (2) | F6'—C16—F4' | 106.3 (6) |
N1—C5—H5 | 108.6 | F5—C16—F4' | 77.2 (6) |
C4—C5—H5 | 108.6 | F4—C16—F4' | 34.9 (6) |
C6—C5—H5 | 108.6 | F5'—C16—F4' | 104.1 (6) |
O7—C6—O8 | 125.6 (3) | F6—C16—F4' | 132.7 (6) |
O7—C6—C5 | 117.4 (3) | F6'—C16—C15 | 112.9 (4) |
O8—C6—C5 | 116.9 (3) | F5—C16—C15 | 115.0 (5) |
N4—C7—C8 | 113.0 (3) | F4—C16—C15 | 115.2 (5) |
N4—C7—H7A | 109.0 | F5'—C16—C15 | 112.0 (4) |
C8—C7—H7A | 109.0 | F6—C16—C15 | 109.0 (5) |
N4—C7—H7B | 109.0 | F4'—C16—C15 | 112.3 (4) |
C8—C7—H7B | 109.0 | C5—N1—H1C | 109.5 |
H7A—C7—H7B | 107.8 | C5—N1—H1D | 109.5 |
C7—C8—C9 | 115.2 (3) | H1C—N1—H1D | 109.5 |
C7—C8—H8A | 108.5 | C5—N1—H1E | 109.5 |
C9—C8—H8A | 108.5 | H1C—N1—H1E | 109.5 |
C7—C8—H8B | 108.5 | H1D—N1—H1E | 109.5 |
C9—C8—H8B | 108.5 | C1—N2—H2C | 109.5 |
H8A—C8—H8B | 107.5 | C1—N2—H2D | 109.5 |
C10—C9—C8 | 113.6 (3) | H2C—N2—H2D | 109.5 |
C10—C9—H9A | 108.8 | C1—N2—H2E | 109.5 |
C8—C9—H9A | 108.8 | H2C—N2—H2E | 109.5 |
C10—C9—H9B | 108.8 | H2D—N2—H2E | 109.5 |
C8—C9—H9B | 108.8 | C11—N3—H3C | 109.5 |
H9A—C9—H9B | 107.7 | C11—N3—H3D | 109.5 |
C9—C10—C11 | 113.9 (3) | H3C—N3—H3D | 109.5 |
C9—C10—H10A | 108.8 | C11—N3—H3E | 109.5 |
C11—C10—H10A | 108.8 | H3C—N3—H3E | 109.5 |
C9—C10—H10B | 108.8 | H3D—N3—H3E | 109.5 |
C11—C10—H10B | 108.8 | C7—N4—H4C | 109.5 |
H10A—C10—H10B | 107.7 | C7—N4—H4D | 109.5 |
N3—C11—C10 | 110.6 (3) | H4C—N4—H4D | 109.5 |
N3—C11—C12 | 110.0 (2) | C7—N4—H4E | 109.5 |
C10—C11—C12 | 110.4 (3) | H4C—N4—H4E | 109.5 |
N3—C11—H11 | 108.6 | H4D—N4—H4E | 109.5 |
C10—C11—H11 | 108.6 | ||
N2—C1—C2—C3 | −56.8 (4) | F3—C13—C14—O2 | 8.0 (5) |
C1—C2—C3—C4 | −62.9 (4) | F2—C13—C14—O2 | 130.0 (4) |
C2—C3—C4—C5 | 173.4 (3) | F1—C13—C14—O2 | −111.8 (4) |
C3—C4—C5—N1 | 58.8 (3) | F3—C13—C14—O1 | −173.0 (4) |
C3—C4—C5—C6 | −178.8 (3) | F2—C13—C14—O1 | −51.0 (5) |
N1—C5—C6—O7 | 14.6 (4) | F1—C13—C14—O1 | 67.2 (4) |
C4—C5—C6—O7 | −108.0 (3) | O3—C15—C16—F6' | 78.6 (8) |
N1—C5—C6—O8 | −168.6 (3) | O4—C15—C16—F6' | −98.9 (8) |
C4—C5—C6—O8 | 68.8 (4) | O3—C15—C16—F5 | −127.4 (8) |
N4—C7—C8—C9 | −58.7 (4) | O4—C15—C16—F5 | 55.0 (9) |
C7—C8—C9—C10 | −58.1 (4) | O3—C15—C16—F4 | −3.5 (11) |
C8—C9—C10—C11 | 177.0 (3) | O4—C15—C16—F4 | 178.9 (10) |
C9—C10—C11—N3 | 61.2 (3) | O3—C15—C16—F5' | −158.3 (7) |
C9—C10—C11—C12 | −176.7 (3) | O4—C15—C16—F5' | 24.1 (8) |
N3—C11—C12—O5 | −167.2 (3) | O3—C15—C16—F6 | 114.9 (9) |
C10—C11—C12—O5 | 70.4 (4) | O4—C15—C16—F6 | −62.7 (9) |
N3—C11—C12—O6 | 16.8 (4) | O3—C15—C16—F4' | −41.6 (7) |
C10—C11—C12—O6 | −105.6 (3) | O4—C15—C16—F4' | 140.9 (6) |
D—H···A | D—H | H···A | D···A | D—H···A |
N4—H4E···O7i | 0.89 | 1.96 | 2.838 (4) | 168 |
N4—H4D···O1i | 0.89 | 2.63 | 3.080 (4) | 112 |
N4—H4D···F2i | 0.89 | 2.54 | 3.079 (4) | 120 |
N4—H4D···O3i | 0.89 | 2.05 | 2.842 (4) | 147 |
N3—H3E···O8ii | 0.89 | 1.98 | 2.866 (4) | 172 |
N3—H3D···O4iii | 0.89 | 1.98 | 2.864 (4) | 171 |
N3—H3C···O6iv | 0.89 | 2.40 | 3.148 (4) | 142 |
N3—H3C···O5iv | 0.89 | 2.23 | 3.064 (4) | 157 |
N2—H2E···O6v | 0.89 | 1.97 | 2.853 (4) | 174 |
N2—H2D···O3vi | 0.89 | 1.94 | 2.800 (4) | 163 |
N2—H2C···O4vii | 0.89 | 2.12 | 2.934 (4) | 151 |
N1—H1E···O5iv | 0.89 | 1.99 | 2.870 (4) | 172 |
N1—H1C···O7i | 0.89 | 2.52 | 3.212 (4) | 136 |
N1—H1C···O8i | 0.89 | 2.04 | 2.901 (4) | 163 |
Symmetry codes: (i) x+1, y, z; (ii) x+1, y, z−1; (iii) −x+1, y−1/2, −z+1; (iv) x−1, y, z; (v) x−1, y, z+1; (vi) −x, y−1/2, −z+2; (vii) −x+1, y−1/2, −z+2. |
Experimental details
Crystal data | |
Chemical formula | C6H15N2O2+·C2F3O2− |
Mr | 260.22 |
Crystal system, space group | Monoclinic, P21 |
Temperature (K) | 293 |
a, b, c (Å) | 5.6985 (2), 23.5430 (8), 8.5007 (3) |
β (°) | 91.630 (2) |
V (Å3) | 1139.99 (7) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.15 |
Crystal size (mm) | 0.35 × 0.29 × 0.12 |
Data collection | |
Diffractometer | Bruker APEXII CCD area-detector diffractometer |
Absorption correction | Multi-scan (APEX2; Bruker, 2005) |
Tmin, Tmax | 0.95, 0.98 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 8405, 2674, 2470 |
Rint | 0.023 |
(sin θ/λ)max (Å−1) | 0.650 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.044, 0.122, 1.07 |
No. of reflections | 2674 |
No. of parameters | 340 |
No. of restraints | 43 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.44, −0.23 |
Computer programs: APEX2 (Bruker, 2005), SIR97 (Altomare et al., 1999), SHELXL97 (Sheldrick, 1997), SHELXTL (Sheldrick, 2000), WinGX (Farrugia, 1999).
C1—N2 | 1.481 (5) | C16—F6' | 1.308 (5) |
C5—N1 | 1.486 (4) | C16—F5 | 1.312 (5) |
C7—N4 | 1.484 (5) | C16—F4 | 1.319 (5) |
C11—N3 | 1.498 (4) | C16—F5' | 1.323 (5) |
C13—F3 | 1.324 (5) | C16—F6 | 1.337 (5) |
C13—F2 | 1.328 (5) | C16—F4' | 1.338 (5) |
C13—F1 | 1.330 (5) |
D—H···A | D—H | H···A | D···A | D—H···A |
N4—H4E···O7i | 0.89 | 1.96 | 2.838 (4) | 167.8 |
N4—H4D···O1i | 0.89 | 2.63 | 3.080 (4) | 112.3 |
N4—H4D···F2i | 0.89 | 2.54 | 3.079 (4) | 119.7 |
N4—H4D···O3i | 0.89 | 2.05 | 2.842 (4) | 146.9 |
N3—H3E···O8ii | 0.89 | 1.98 | 2.866 (4) | 171.9 |
N3—H3D···O4iii | 0.89 | 1.98 | 2.864 (4) | 170.9 |
N3—H3C···O6iv | 0.89 | 2.40 | 3.148 (4) | 141.5 |
N3—H3C···O5iv | 0.89 | 2.23 | 3.064 (4) | 156.8 |
N2—H2E···O6v | 0.89 | 1.97 | 2.853 (4) | 174.4 |
N2—H2D···O3vi | 0.89 | 1.94 | 2.800 (4) | 163.1 |
N2—H2C···O4vii | 0.89 | 2.12 | 2.934 (4) | 151.3 |
N1—H1E···O5iv | 0.89 | 1.99 | 2.870 (4) | 171.9 |
N1—H1C···O7i | 0.89 | 2.52 | 3.212 (4) | 135.5 |
N1—H1C···O8i | 0.89 | 2.04 | 2.901 (4) | 163.3 |
Symmetry codes: (i) x+1, y, z; (ii) x+1, y, z−1; (iii) −x+1, y−1/2, −z+1; (iv) x−1, y, z; (v) x−1, y, z+1; (vi) −x, y−1/2, −z+2; (vii) −x+1, y−1/2, −z+2. |
Acknowledgements
This work was supported by the National Natural Science Foundation of China (grant No. 60608010) and the Foundation for the Authors of National Excellent Doctoral Dissertations of China (grant No. 200539).
References
Altomare, A., Burla, M. C., Camalli, M., Cascarano, G. L., Giacovazzo, C., Guagliardi, A., Moliterni, A. G. G., Polidori, G. & Spagna, R. (1999). J. Appl. Cryst. 32, 115–119. Web of Science CrossRef CAS IUCr Journals Google Scholar
Babu, R. R., Sethuraman, K., Gopalakrishnan, R. & Ramasamy, P. (2006). J. Cryst. Growth, 297, 356–360. CAS Google Scholar
Babu, R. R., Sethuraman, K., Vijayan, N., Bhagavannarayana, G., Gopalakrishnan, R. & Ramasamy, P. (2006). Cryst. Res. Technol. 41, 906–910. Web of Science CrossRef CAS Google Scholar
Bruker (2005). APEX2. Version 2.0-2. Bruker AXS Inc., Madison, Wisconsin,USA. Google Scholar
Chandra, N. R., Prabu, M. M., Venkatraman, J., Suresh, S. & Vijayan, M. (1998). Acta Cryst. B54, 257–263. Web of Science CSD CrossRef CAS IUCr Journals Google Scholar
Debrus, S., Marchewka, M. K., Baran, J., Drozd, M., Czopnik, R., Pietraszko, A. & Ratajczak, H. (2005). J. Solid State Chem. 178, 2880–2896. Web of Science CSD CrossRef CAS Google Scholar
Drozd, M. & Marchewka, M. K. (2006). Spectrochim. Acta A, 64, 6–23. CrossRef CAS Google Scholar
Farrugia, L. J. (1999). J. Appl. Cryst. 32, 837–838. CrossRef CAS IUCr Journals Google Scholar
Kurtz, S. K. & Perry, T. T. (1968). J. Appl. Phys. 39, 3798–3813. CrossRef CAS Web of Science Google Scholar
Marchewka, M. K., Debrus, S. & Ratajczak, H. (2003). Cryst. Growth Des. 3, 587–592. Web of Science CrossRef CAS Google Scholar
Prasad, G. S. & Vijayan, M. (1993). Acta Cryst. B49, 348–356. CSD CrossRef CAS Web of Science IUCr Journals Google Scholar
Pratap, J. V., Ravishankar, R. & Vijayan, M. (2000). Acta Cryst. B56, 690–696. Web of Science CSD CrossRef CAS IUCr Journals Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Sheldrick, G. M. (2000). SHELXTL. Version 6.10. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Suresh, S., Prasad, G. S. & Vijayan, M. (1994). Int. J. Pept. Protein Res. 43, 139–146. CrossRef CAS PubMed Web of Science Google Scholar
Xu, D., Jiang, M. H. & Tan, Z. (1983). Acta Chim. Sinica, 2, 230–233. Google Scholar
Yokotani, A., Sasaki, T., Yoshida, K. & Nakai, S. (1989). Appl. Phys. Lett. 55, 2692–2693. CrossRef CAS Web of Science Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Over the past two decades, the discovery of promising optical properties in L-arginine phosphate monohydrate (LAP) and its deuterated complex has stimulated a strong interest in the nonlinear optcial (NLO) crystals of l-larginine family and other amino acids. (Xu et al., 1983; Yokotani et al., 1989). As one of the three diamino carboxylic acids, l-lysine reacted with other carboxylic acids such as formic, acetic, succinic, glycolic, oxalic and maleic acids has also been studied for its intrinsic polarities (Prasad & Vijayan, 1993; Suresh et al., 1994; Marchewka et al., 2003; Chandra et al., 1998; Pratap et al., 2000). Several NLO crystals composed of l-lysine have been grown and characterized (Babu, Sethuraman, Gopalakrishnan & Ramasamy, 2006; Debrus et al., 2005; Babu, Sethuraman, Vijayan, Bhagavannarayana, Gopalakrishnan & Ramasamy, 2006). Duo to the low UV cutoff (210 nm at 0.1%, v/v) and effectiveness as an ion-pairing agent, trifluoroacetic acid attracts our attention. Hence, it may be useful to synthesize the amino acid compounds with trifluoroacetic acid and investigate their properties.
In the crystal structure of the title compound, (I) (Fig. 1), both the amino groups in the L-lysine+ cations are protonated. All the C—N bonds (Table 1) are typical and bond lengths are somewhat shorter than the respective value of C—NH3+ (cal. 1.490 A) of L-lysine cations (Drozd & Marchewka, 2006). The C—F bond lengths of C16 are shorter than respective values of C13 due to the positional disorder of fluorin atoms F4, F5 and F6 of trifluoroacetate ion.
The packing of the title compound is shown in Fig. 2. A three-dimensional network of hydrogen bonds connects l-lysine cations and trifluoroacetate anions together. The hydrogen bonds of N—H···O are dominative among the negatively charged carboxylate groups, positively charged protonated amino groups. The introduction of trifluoroacetate anions optimizes the orientation of L-lysine through interactions among carboxyl groups and amino groups.
The second harmonic geneartion (SHG) of crystals of (I) was studied by the powder SHG method (Kurtz & Perry, 1968). The green light beam was observed, which confirms its non-centrosymmetric structure.