metal-organic compounds\(\def\hfill{\hskip 5em}\def\hfil{\hskip 3em}\def\eqno#1{\hfil {#1}}\)

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ISSN: 2056-9890

Di­aqua­bis­(9-oxo-4,5-di­aza­fluoren-3-olato-κ2N4,O3)cadmium(II)

aDepartment of Environment Science, Northeast Normal University, Changchun 130024, People's Republic of China
*Correspondence e-mail: yuanx@nenu.edu.cn, shenglx@nenu.edu.cn

(Received 22 November 2007; accepted 17 December 2007; online 4 January 2008)

The title compound, [Cd(C11H5N2O2)2(H2O)2], is a mononuclear complex consisting of a CdII atom, two 3-hydr­oxy-4,5-diaza­fluoren-9-one ligands and two coordinated water mol­ecules. The CdII atom, lying on a twofold axis, displays a distorted octa­hedral coordintion. Adjacent mol­ecules are linked by O—H⋯O hydrogen bonds and ππ inter­actions [centroid–centroid distance = 3.84 (1) Å], leading to a one-dimensional chain. Weak C—H⋯O hydrogen bonds connect the chains into a two-dimensional supra­molecular structure.

Related literature

For related literature, see: Li et al. (2006[Li, Z.-F., Wang, C.-X. & Du, C.-X. (2006). Acta Cryst. C62, m488-m490.]); Rillema et al. (2007[Rillema, D. P., Kirgan, R. & Moore, C. (2007). Acta Cryst. E63, o3740.]); Tershansy et al. (2006[Tershansy, M. A., Goforth, A. M., Smith, M. D., Peterson, L. R. Jr & zur Loye, H.-C. (2006). Acta Cryst. E62, m3269-m3271.]); Zhao et al. (2006[Zhao, Q. H., Wang, L., Wang, K. M. & Fang, R. B. (2006). Chin. J. Inorg. Chem. 22, 1285-1288.]).

[Scheme 1]

Experimental

Crystal data
  • [Cd(C11H5N2O2)2(H2O)2]

  • Mr = 542.77

  • Monoclinic, C 2/c

  • a = 28.190 (5) Å

  • b = 5.572 (4) Å

  • c = 13.933 (5) Å

  • β = 110.622 (5)°

  • V = 2048.3 (17) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 1.12 mm−1

  • T = 293 (2) K

  • 0.26 × 0.21 × 0.17 mm

Data collection
  • Rigaku R-AXIS RAPID diffractometer

  • Absorption correction: multi-scan (ABSCOR; Higashi, 1995[Higashi, T. (1995). ABSCOR. Rigaku Corporation, Tokyo, Japan.]) Tmin = 0.760, Tmax = 0.833

  • 5972 measured reflections

  • 2406 independent reflections

  • 1965 reflections with I > 2σ(I)

  • Rint = 0.021

Refinement
  • R[F2 > 2σ(F2)] = 0.029

  • wR(F2) = 0.082

  • S = 1.02

  • 2406 reflections

  • 158 parameters

  • 2 restraints

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.62 e Å−3

  • Δρmin = −0.36 e Å−3

Table 1
Selected geometric parameters (Å, °)

Cd1—O1 2.233 (2)
Cd1—N1 2.3217 (19)
Cd1—O2 2.410 (2)
O1—Cd1—O1i 101.59 (13)
O1—Cd1—N1i 92.77 (7)
O1—Cd1—N1 105.03 (8)
N1i—Cd1—N1 151.82 (11)
O1—Cd1—O2 94.62 (9)
O1i—Cd1—O2 148.19 (7)
N1i—Cd1—O2 101.27 (7)
N1—Cd1—O2 56.38 (7)
O2—Cd1—O2i 85.23 (11)
Symmetry code: (i) [-x+2, y, -z+{\script{1\over 2}}].

Table 2
Hydrogen-bond geometry (Å, °)

D—H⋯A D—H H⋯A DA D—H⋯A
O1—H1A⋯N2i 0.82 (2) 2.02 (2) 2.832 (3) 172 (3)
O1—H1B⋯O2ii 0.83 (2) 1.86 (2) 2.686 (3) 170 (4)
C3—H3⋯O3iii 0.93 2.48 3.351 (5) 156
Symmetry codes: (i) [-x+2, y, -z+{\script{1\over 2}}]; (ii) x, y+1, z; (iii) [-x+{\script{3\over 2}}, -y-{\script{1\over 2}}, -z].

Data collection: PROCESS-AUTO (Rigaku, 1998[Rigaku (1998). PROCESS-AUTO. Rigaku Corporation, Tokyo, Japan.]); cell refinement: PROCESS-AUTO; data reduction: PROCESS-AUTO; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997[Sheldrick, G. M. (1997). SHELXS97 and SHELXL97. University of Göttingen, Germany.]); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997[Sheldrick, G. M. (1997). SHELXS97 and SHELXL97. University of Göttingen, Germany.]); molecular graphics: SHELXTL-Plus (Siemens, 1990[Siemens (1990). SHELXTL-Plus. Siemens Analytical X-ray Instruments Inc., Madison, Wisconsin, USA.]); software used to prepare material for publication: SHELXL97.

Supporting information


Comment top

The structures of 4,5-diazafluoren-9-one and its metal complexes have been reported (Li et al., 2006; Rillema et al., 2007; Tershansy et al., 2006; Zhao et al., 2006). However, no studies of its derivative, 3-hydroxyl-4,5-diazafluoren-9-one, and any metal complexes of the ligand are known to date. In this paper, we present the crystal structure of the title compound, [Cd(C11H5N2O2)2(H2O)2].

The title compound is a neutral mononuclear complex. The CdII atom is six-coordinate and exhibits a distorted octahedral coordintion geometry, defined by two N atoms and two O atoms from two 3-hydroxyl-4,5-diazafluoren-9-one ligands and two O atoms from two aqua ligands (Fig. 1). The Cd—O distances are in the range of 2.233 (2)–2.410 (2)Å and the Cd—N length is 2.322 (2) Å (Table 1). Adjacent molecules are linked by O—H···O hydrogen bonds and ππ interactions [centroid–centroid distance 3.84 (1) Å], leading to a one-dimensional chain. Weak C—H···O hydrogen bonds connect the chains into a two-dimensional supramolecular structure (Fig. 2; Table 2).

Related literature top

For related literature, see: Li et al. (2006); Rillema et al. (2007); Tershansy et al. (2006); Zhao et al. (2006).

Experimental top

Cadmium(II) acetate dihydrate (0.080 g, 0.3 mmol), 3-hydroxyl-4,5-diazafluoren-9-one (0.040 g, 0.2 mmol), sodium hydroxide (0.024 g, 0.4 mmol) and water (14 ml) were placed in a 23 ml Teflon-lined autoclave, which was heated at 423 K for 3 d. After cooling slowly to room temperature at a rate of 10 K h-1, colorless crystals of the title compound were obtained. Analysis calculated for C22H14CdN4O6: C 48.64, H 2.58, N 10.32%; found: C 48.51, H 2.67, N 10.42%.

Refinement top

H atoms on C atoms were positioned geometrically and refined as riding, with C—H = 0.93Å and Uiso(H) = 1.2Ueq(C). H atoms of water molecule were located on a difference Fourier map and refined isotropically with a restraint of O—H = 0.82 (1) Å.

Computing details top

Data collection: PROCESS-AUTO (Rigaku, 1998); cell refinement: PROCESS-AUTO (Rigaku, 1998); data reduction: PROCESS-AUTO (Rigaku, 1998); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: SHELXTL-Plus (Siemens, 1990); software used to prepare material for publication: SHELXL97 (Sheldrick, 1997).

Figures top
[Figure 1] Fig. 1. Molecular structure of the title compound. Displacement ellipsoids are drawn at the 30% probability level. [Symmetry code: (i) -x + 2, y, -z + 1/2.]
[Figure 2] Fig. 2. A packing diagram for the two-dimensional supramolecular structure via hydrogen bonds (dashed lines).
Diaquabis(9-oxo-4,5-diazafluoren-3-olato- κ2N4,O3)cadmium(II) top
Crystal data top
[Cd(C11H5N2O2)2(H2O)2]F(000) = 1080
Mr = 542.77Dx = 1.760 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 4465 reflections
a = 28.190 (5) Åθ = 3.0–28.3°
b = 5.572 (4) ŵ = 1.12 mm1
c = 13.933 (5) ÅT = 293 K
β = 110.622 (5)°Block, colorless
V = 2048.3 (17) Å30.26 × 0.21 × 0.17 mm
Z = 4
Data collection top
Rigaku R-AXIS RAPID
diffractometer
2406 independent reflections
Radiation source: rotation anode1965 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.021
ω scansθmax = 28.3°, θmin = 3.0°
Absorption correction: multi-scan
(ABSCOR; Higashi, 1995)
h = 2637
Tmin = 0.760, Tmax = 0.833k = 77
5972 measured reflectionsl = 1812
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.029Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.082H atoms treated by a mixture of independent and constrained refinement
S = 1.02 w = 1/[σ2(Fo2) + (0.0433P)2 + 1.5483P]
where P = (Fo2 + 2Fc2)/3
2406 reflections(Δ/σ)max < 0.001
158 parametersΔρmax = 0.62 e Å3
2 restraintsΔρmin = 0.36 e Å3
Crystal data top
[Cd(C11H5N2O2)2(H2O)2]V = 2048.3 (17) Å3
Mr = 542.77Z = 4
Monoclinic, C2/cMo Kα radiation
a = 28.190 (5) ŵ = 1.12 mm1
b = 5.572 (4) ÅT = 293 K
c = 13.933 (5) Å0.26 × 0.21 × 0.17 mm
β = 110.622 (5)°
Data collection top
Rigaku R-AXIS RAPID
diffractometer
2406 independent reflections
Absorption correction: multi-scan
(ABSCOR; Higashi, 1995)
1965 reflections with I > 2σ(I)
Tmin = 0.760, Tmax = 0.833Rint = 0.021
5972 measured reflections
Refinement top
R[F2 > 2σ(F2)] = 0.0292 restraints
wR(F2) = 0.082H atoms treated by a mixture of independent and constrained refinement
S = 1.02Δρmax = 0.62 e Å3
2406 reflectionsΔρmin = 0.36 e Å3
158 parameters
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
Cd11.00000.24267 (5)0.25000.04153 (11)
N10.91692 (7)0.1412 (4)0.15373 (15)0.0337 (4)
N20.90481 (8)0.5376 (4)0.00770 (16)0.0400 (5)
O20.95401 (7)0.0756 (3)0.29552 (14)0.0455 (4)
O30.75172 (7)0.0883 (4)0.09790 (15)0.0553 (5)
C10.91486 (9)0.0461 (4)0.21600 (18)0.0358 (5)
C20.87029 (11)0.1903 (5)0.1904 (2)0.0430 (6)
H20.86950.32030.23170.052*
C30.82874 (10)0.1395 (5)0.1061 (2)0.0423 (6)
H30.79950.23220.08970.051*
C40.83130 (9)0.0555 (5)0.04508 (18)0.0366 (5)
C50.79449 (9)0.1567 (5)0.0489 (2)0.0404 (6)
C60.82108 (9)0.3654 (5)0.07684 (18)0.0377 (5)
C70.80569 (10)0.5278 (5)0.1560 (2)0.0470 (6)
H70.77310.52490.20450.056*
C80.84113 (12)0.6963 (5)0.1601 (2)0.0501 (7)
H80.83250.81020.21220.060*
C90.88918 (12)0.6950 (5)0.0868 (2)0.0460 (7)
H90.91220.80910.09200.055*
C100.87021 (9)0.3786 (4)0.00494 (17)0.0334 (5)
C110.87612 (9)0.1865 (4)0.07194 (19)0.0327 (5)
O10.99406 (8)0.4960 (4)0.36946 (16)0.0505 (5)
H1A1.0223 (8)0.519 (6)0.412 (2)0.065 (10)*
H1B0.9809 (13)0.630 (4)0.353 (3)0.067 (11)*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
Cd10.02980 (15)0.03837 (17)0.04841 (18)0.0000.00383 (11)0.000
N10.0281 (10)0.0314 (10)0.0377 (11)0.0028 (8)0.0066 (8)0.0013 (9)
N20.0387 (11)0.0401 (12)0.0400 (11)0.0032 (9)0.0125 (9)0.0036 (9)
O20.0427 (10)0.0407 (10)0.0454 (10)0.0028 (8)0.0058 (8)0.0076 (8)
O30.0343 (10)0.0707 (14)0.0495 (11)0.0142 (9)0.0005 (8)0.0081 (10)
C10.0369 (12)0.0317 (12)0.0382 (13)0.0023 (10)0.0124 (10)0.0002 (10)
C20.0489 (16)0.0348 (13)0.0490 (15)0.0056 (11)0.0218 (13)0.0017 (11)
C30.0385 (14)0.0400 (14)0.0494 (15)0.0123 (11)0.0168 (12)0.0068 (12)
C40.0296 (11)0.0403 (13)0.0385 (13)0.0051 (10)0.0103 (10)0.0061 (11)
C50.0331 (13)0.0464 (14)0.0396 (13)0.0031 (11)0.0100 (11)0.0089 (12)
C60.0317 (12)0.0444 (15)0.0345 (12)0.0003 (10)0.0085 (10)0.0048 (11)
C70.0415 (14)0.0581 (17)0.0355 (13)0.0076 (12)0.0062 (11)0.0035 (12)
C80.0597 (18)0.0509 (16)0.0383 (14)0.0123 (14)0.0154 (13)0.0101 (12)
C90.0500 (16)0.0423 (15)0.0499 (16)0.0011 (12)0.0227 (13)0.0083 (12)
C100.0318 (11)0.0350 (13)0.0312 (11)0.0004 (9)0.0086 (9)0.0022 (10)
C110.0296 (12)0.0320 (12)0.0353 (12)0.0025 (9)0.0097 (10)0.0030 (10)
O10.0448 (12)0.0426 (11)0.0532 (12)0.0076 (9)0.0039 (10)0.0025 (10)
Geometric parameters (Å, º) top
Cd1—O12.233 (2)C3—C41.397 (4)
Cd1—O1i2.233 (2)C3—H30.9300
Cd1—N1i2.3217 (19)C4—C111.391 (3)
Cd1—N12.3217 (19)C4—C51.468 (4)
Cd1—O22.410 (2)C5—C61.507 (4)
Cd1—O2i2.410 (2)C6—C71.374 (4)
N1—C111.327 (3)C6—C101.396 (3)
N1—C11.371 (3)C7—C81.386 (4)
N2—C101.328 (3)C7—H70.9300
N2—C91.355 (3)C8—C91.380 (4)
O2—C11.269 (3)C8—H80.9300
O3—C51.219 (3)C9—H90.9300
C1—C21.427 (4)C10—C111.482 (4)
C2—C31.365 (4)O1—H1A0.817 (18)
C2—H20.9300O1—H1B0.832 (19)
O1—Cd1—O1i101.59 (13)C4—C3—H3120.9
O1—Cd1—N1i92.77 (7)C11—C4—C3118.8 (2)
O1i—Cd1—N1i105.03 (8)C11—C4—C5109.1 (2)
O1—Cd1—N1105.03 (8)C3—C4—C5132.1 (2)
O1i—Cd1—N192.77 (7)O3—C5—C4128.9 (3)
N1i—Cd1—N1151.82 (11)O3—C5—C6125.5 (3)
O1—Cd1—O294.62 (9)C4—C5—C6105.5 (2)
O1i—Cd1—O2148.19 (7)C7—C6—C10119.6 (2)
N1i—Cd1—O2101.27 (7)C7—C6—C5132.1 (2)
N1—Cd1—O256.38 (7)C10—C6—C5108.3 (2)
O1—Cd1—O2i148.19 (7)C6—C7—C8116.8 (2)
O1i—Cd1—O2i94.62 (9)C6—C7—H7121.6
N1i—Cd1—O2i56.38 (7)C8—C7—H7121.6
N1—Cd1—O2i101.27 (7)C9—C8—C7120.0 (3)
O2—Cd1—O2i85.23 (11)C9—C8—H8120.0
C11—N1—C1118.1 (2)C7—C8—H8120.0
C11—N1—Cd1147.41 (17)N2—C9—C8124.0 (3)
C1—N1—Cd194.51 (14)N2—C9—H9118.0
C10—N2—C9115.1 (2)C8—C9—H9118.0
C1—O2—Cd193.31 (15)N2—C10—C6124.6 (2)
O2—C1—N1115.7 (2)N2—C10—C11127.3 (2)
O2—C1—C2124.3 (2)C6—C10—C11108.1 (2)
N1—C1—C2120.0 (2)N1—C11—C4124.2 (2)
C3—C2—C1120.8 (3)N1—C11—C10126.9 (2)
C3—C2—H2119.6C4—C11—C10108.9 (2)
C1—C2—H2119.6Cd1—O1—H1A109 (2)
C2—C3—C4118.2 (2)Cd1—O1—H1B120 (2)
C2—C3—H3120.9H1A—O1—H1B107 (3)
O1—Cd1—N1—C1193.5 (3)C3—C4—C5—C6179.4 (3)
O1i—Cd1—N1—C119.3 (3)O3—C5—C6—C72.3 (5)
N1i—Cd1—N1—C11139.1 (3)C4—C5—C6—C7179.5 (3)
O2—Cd1—N1—C11179.0 (3)O3—C5—C6—C10176.9 (3)
O2i—Cd1—N1—C11104.6 (3)C4—C5—C6—C101.4 (3)
O1—Cd1—N1—C187.51 (16)C10—C6—C7—C80.9 (4)
O1i—Cd1—N1—C1169.70 (14)C5—C6—C7—C8178.2 (3)
N1i—Cd1—N1—C139.89 (13)C6—C7—C8—C90.1 (4)
O2—Cd1—N1—C12.01 (13)C10—N2—C9—C80.3 (4)
O2i—Cd1—N1—C174.44 (15)C7—C8—C9—N20.7 (5)
O1—Cd1—O2—C1107.16 (15)C9—N2—C10—C60.7 (4)
O1i—Cd1—O2—C113.7 (2)C9—N2—C10—C11179.8 (2)
N1i—Cd1—O2—C1159.08 (14)C7—C6—C10—N21.3 (4)
N1—Cd1—O2—C12.17 (14)C5—C6—C10—N2178.0 (2)
O2i—Cd1—O2—C1104.75 (16)C7—C6—C10—C11179.0 (2)
Cd1—O2—C1—N13.4 (2)C5—C6—C10—C111.7 (3)
Cd1—O2—C1—C2177.7 (2)C1—N1—C11—C40.2 (4)
C11—N1—C1—O2177.1 (2)Cd1—N1—C11—C4178.7 (2)
Cd1—N1—C1—O23.5 (2)C1—N1—C11—C10180.0 (2)
C11—N1—C1—C21.9 (3)Cd1—N1—C11—C101.1 (5)
Cd1—N1—C1—C2177.5 (2)C3—C4—C11—N11.3 (4)
O2—C1—C2—C3176.7 (2)C5—C4—C11—N1179.7 (2)
N1—C1—C2—C32.2 (4)C3—C4—C11—C10178.6 (2)
C1—C2—C3—C40.7 (4)C5—C4—C11—C100.5 (3)
C2—C3—C4—C110.9 (4)N2—C10—C11—N11.6 (4)
C2—C3—C4—C5179.7 (3)C6—C10—C11—N1178.8 (2)
C11—C4—C5—O3177.7 (3)N2—C10—C11—C4178.3 (2)
C3—C4—C5—O31.2 (5)C6—C10—C11—C41.4 (3)
C11—C4—C5—C60.5 (3)
Symmetry code: (i) x+2, y, z+1/2.
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
O1—H1A···N2i0.82 (2)2.02 (2)2.832 (3)172 (3)
O1—H1B···O2ii0.83 (2)1.86 (2)2.686 (3)170 (4)
C3—H3···O3iii0.932.483.351 (5)156
Symmetry codes: (i) x+2, y, z+1/2; (ii) x, y+1, z; (iii) x+3/2, y1/2, z.

Experimental details

Crystal data
Chemical formula[Cd(C11H5N2O2)2(H2O)2]
Mr542.77
Crystal system, space groupMonoclinic, C2/c
Temperature (K)293
a, b, c (Å)28.190 (5), 5.572 (4), 13.933 (5)
β (°) 110.622 (5)
V3)2048.3 (17)
Z4
Radiation typeMo Kα
µ (mm1)1.12
Crystal size (mm)0.26 × 0.21 × 0.17
Data collection
DiffractometerRigaku R-AXIS RAPID
diffractometer
Absorption correctionMulti-scan
(ABSCOR; Higashi, 1995)
Tmin, Tmax0.760, 0.833
No. of measured, independent and
observed [I > 2σ(I)] reflections
5972, 2406, 1965
Rint0.021
(sin θ/λ)max1)0.667
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.029, 0.082, 1.02
No. of reflections2406
No. of parameters158
No. of restraints2
H-atom treatmentH atoms treated by a mixture of independent and constrained refinement
Δρmax, Δρmin (e Å3)0.62, 0.36

Computer programs: PROCESS-AUTO (Rigaku, 1998), SHELXS97 (Sheldrick, 1997), SHELXL97 (Sheldrick, 1997), SHELXTL-Plus (Siemens, 1990).

Selected geometric parameters (Å, º) top
Cd1—O12.233 (2)Cd1—O22.410 (2)
Cd1—N12.3217 (19)
O1—Cd1—O1i101.59 (13)O1i—Cd1—O2148.19 (7)
O1—Cd1—N1i92.77 (7)N1i—Cd1—O2101.27 (7)
O1—Cd1—N1105.03 (8)N1—Cd1—O256.38 (7)
N1i—Cd1—N1151.82 (11)O2—Cd1—O2i85.23 (11)
O1—Cd1—O294.62 (9)
Symmetry code: (i) x+2, y, z+1/2.
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
O1—H1A···N2i0.82 (2)2.02 (2)2.832 (3)172 (3)
O1—H1B···O2ii0.83 (2)1.86 (2)2.686 (3)170 (4)
C3—H3···O3iii0.932.483.351 (5)156
Symmetry codes: (i) x+2, y, z+1/2; (ii) x, y+1, z; (iii) x+3/2, y1/2, z.
 

Acknowledgements

The authors thank the Key Project of the Chinese Ministry of Education (grant No. 308008) and the Analysis and Testing Foundation of Northeast Normal University for financial support.

References

First citationHigashi, T. (1995). ABSCOR. Rigaku Corporation, Tokyo, Japan.  Google Scholar
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