organic compounds
Cyclo(L-tyrosyl-L-tryptophanyl) dimethylformamide solvate
aDepartment of Chemistry, University of Oslo, PO Box 1033 Blindern, N-0315 Oslo, Norway
*Correspondence e-mail: c.h.gorbitz@kjemi.uio.no
The structure of the title compound [systematic name: (3S,6S)-3-(4-hydroxybenzyl)-6-(1H-indol-3-ylmethyl)piperazine-2,5-dione dimethylformamide solvate], C20H19N3O3·C3H7NO, contains hydrogen-bonded tapes typical for diketopiperazines. The structure is stabilized by strong intermolecular interactions of the types O—H⋯O and N—H⋯O involving the dipeptide and the solvent molecules. The was known from the starting materials.
Related literature
For related structures, see: Morris et al. (1974); Grant et al. (1999); Suguna et al. (1984); Lin & Webb (1973); Razak et al., (2000); Luo & Palmore (2002); Görbitz (1987); Görbitz & Hartviksen (2006). Solvent inclusion: Görbitz & Hersleth (2000). Cambridge Structural Database: Allen (2002).
Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 1998); cell SAINT-Plus (Bruker, 2001); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Bruker, 2000); molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536808000640/pv2058sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536808000640/pv2058Isup2.hkl
The corresponding linear peptide Tyr-Trp was obtained from Bachem. Crystals of the cyclic analogue resulting from ring closure were obtained by slow evaporation of a solution of Tyr-Trp in dimethylformamide.
Positional parameters were refined for H atoms involved in short hydrogen bonds. Other H atoms were positioned with idealized geometry and fixed C—H distances for CH3, CH2, CH and aromatic CH type H-atoms at 0.98, 0.99, 1.00 and 0.95 Å, respectively; Uiso values were 1.2Ueq of the
or 1.5Ueq for the OH and methyl groups. In the absence of significant effects, 2334 Friedel pairs were merged. The was known for the purchased material.Data collection: SMART (Bruker, 1998); cell
SAINT (Bruker, 2001); data reduction: SAINT (Bruker, 2001); program(s) used to solve structure: SHELXS (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Bruker, 2000); molecular graphics: SHELXTL (Bruker, 2000); software used to prepare material for publication: SHELXTL (Bruker, 2000).C20H19N3O3·C3H7NO | F(000) = 448 |
Mr = 422.48 | Dx = 1.303 Mg m−3 |
Monoclinic, P21 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2yb | Cell parameters from 7819 reflections |
a = 6.1923 (2) Å | θ = 1.8–28.3° |
b = 15.3873 (5) Å | µ = 0.09 mm−1 |
c = 11.3780 (3) Å | T = 105 K |
β = 96.661 (1)° | Block, colourless |
V = 1076.81 (6) Å3 | 0.80 × 0.65 × 0.20 mm |
Z = 2 |
Siemens SMART CCD diffractometer | 2786 independent reflections |
Radiation source: fine-focus sealed tube | 2454 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.038 |
Detector resolution: 8.3 pixels mm-1 | θmax = 28.3°, θmin = 1.8° |
Sets of exposures each taken over 0.3° ω rotation scans | h = −8→8 |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | k = −20→20 |
Tmin = 0.800, Tmax = 0.982 | l = −12→15 |
9514 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.045 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.122 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.15 | w = 1/[σ2(Fo2) + (0.0645P)2 + 0.2252P] where P = (Fo2 + 2Fc2)/3 |
2786 reflections | (Δ/σ)max = 0.001 |
297 parameters | Δρmax = 0.23 e Å−3 |
1 restraint | Δρmin = −0.27 e Å−3 |
C20H19N3O3·C3H7NO | V = 1076.81 (6) Å3 |
Mr = 422.48 | Z = 2 |
Monoclinic, P21 | Mo Kα radiation |
a = 6.1923 (2) Å | µ = 0.09 mm−1 |
b = 15.3873 (5) Å | T = 105 K |
c = 11.3780 (3) Å | 0.80 × 0.65 × 0.20 mm |
β = 96.661 (1)° |
Siemens SMART CCD diffractometer | 2786 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 2454 reflections with I > 2σ(I) |
Tmin = 0.800, Tmax = 0.982 | Rint = 0.038 |
9514 measured reflections |
R[F2 > 2σ(F2)] = 0.045 | 1 restraint |
wR(F2) = 0.122 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.15 | Δρmax = 0.23 e Å−3 |
2786 reflections | Δρmin = −0.27 e Å−3 |
297 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Data were collected by measuring three sets of exposures with the detector set at 2θ = 29°, crystal-to-detector distance 5.00 cm. Refinement of F2 against ALL reflections. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.1720 (3) | −0.00215 (12) | 0.52224 (17) | 0.0277 (4) | |
O2 | 0.6882 (4) | 0.38722 (14) | 0.7195 (2) | 0.0378 (5) | |
H4 | 0.566 (7) | 0.409 (3) | 0.768 (4) | 0.057* | |
O3 | 0.8442 (3) | 0.11985 (12) | 0.31396 (17) | 0.0269 (4) | |
N1 | 0.7154 (3) | 0.02668 (14) | 0.44228 (19) | 0.0230 (4) | |
H1 | 0.867 (5) | 0.014 (2) | 0.465 (3) | 0.028* | |
N2 | 0.2984 (3) | 0.09051 (13) | 0.39160 (19) | 0.0223 (4) | |
H2 | 0.162 (6) | 0.101 (2) | 0.369 (3) | 0.027* | |
N3 | −0.0323 (4) | 0.35012 (15) | 0.3555 (2) | 0.0268 (4) | |
H3 | −0.123 (6) | 0.379 (3) | 0.383 (3) | 0.032* | |
C1 | 0.5533 (4) | −0.00266 (16) | 0.5160 (2) | 0.0231 (5) | |
H11 | 0.5496 | −0.0676 | 0.5117 | 0.028* | |
C2 | 0.6176 (4) | 0.02202 (18) | 0.6471 (2) | 0.0280 (5) | |
H21 | 0.5086 | −0.0024 | 0.6951 | 0.034* | |
H22 | 0.7596 | −0.0050 | 0.6747 | 0.034* | |
C3 | 0.6339 (4) | 0.11897 (18) | 0.6686 (2) | 0.0269 (5) | |
C4 | 0.4638 (4) | 0.16582 (19) | 0.7071 (2) | 0.0283 (5) | |
H41 | 0.3344 | 0.1361 | 0.7206 | 0.034* | |
C5 | 0.4777 (4) | 0.2550 (2) | 0.7265 (2) | 0.0317 (6) | |
H51 | 0.3601 | 0.2854 | 0.7543 | 0.038* | |
C6 | 0.6650 (5) | 0.29970 (19) | 0.7049 (2) | 0.0305 (6) | |
C7 | 0.8369 (5) | 0.2541 (2) | 0.6663 (3) | 0.0334 (6) | |
H71 | 0.9651 | 0.2840 | 0.6515 | 0.040* | |
C8 | 0.8222 (4) | 0.1643 (2) | 0.6491 (2) | 0.0307 (6) | |
H81 | 0.9417 | 0.1336 | 0.6239 | 0.037* | |
C9 | 0.3262 (4) | 0.02939 (16) | 0.4750 (2) | 0.0214 (4) | |
C10 | 0.4684 (4) | 0.13210 (15) | 0.3333 (2) | 0.0203 (4) | |
H101 | 0.4283 | 0.1259 | 0.2460 | 0.024* | |
C11 | 0.4861 (4) | 0.23024 (15) | 0.3614 (2) | 0.0245 (5) | |
H111 | 0.5356 | 0.2378 | 0.4467 | 0.029* | |
H112 | 0.5976 | 0.2561 | 0.3164 | 0.029* | |
C12 | 0.2766 (4) | 0.27826 (15) | 0.3319 (2) | 0.0219 (5) | |
C13 | 0.1520 (4) | 0.31262 (17) | 0.4122 (2) | 0.0259 (5) | |
H131 | 0.1882 | 0.3108 | 0.4956 | 0.031* | |
C14 | 0.1618 (4) | 0.29527 (15) | 0.2171 (2) | 0.0236 (5) | |
C15 | 0.2022 (5) | 0.27731 (19) | 0.1009 (3) | 0.0312 (5) | |
H151 | 0.3336 | 0.2499 | 0.0857 | 0.037* | |
C16 | 0.0465 (6) | 0.3004 (2) | 0.0084 (3) | 0.0397 (7) | |
H161 | 0.0713 | 0.2876 | −0.0706 | 0.048* | |
C17 | −0.1462 (5) | 0.3422 (2) | 0.0292 (3) | 0.0426 (7) | |
H171 | −0.2505 | 0.3565 | −0.0359 | 0.051* | |
C18 | −0.1877 (5) | 0.36285 (19) | 0.1422 (3) | 0.0367 (6) | |
H181 | −0.3178 | 0.3919 | 0.1561 | 0.044* | |
C19 | −0.0318 (4) | 0.33969 (16) | 0.2361 (2) | 0.0270 (5) | |
C20 | 0.6919 (4) | 0.09162 (16) | 0.3637 (2) | 0.0213 (4) | |
O1D | 0.4352 (4) | 0.46196 (17) | 0.8569 (2) | 0.0448 (5) | |
N1D | 0.1638 (4) | 0.53136 (19) | 0.9359 (2) | 0.0370 (5) | |
C1D | 0.2408 (5) | 0.4758 (2) | 0.8623 (3) | 0.0373 (6) | |
H1D | 0.119 (6) | 0.450 (3) | 0.804 (3) | 0.045* | |
C2D | −0.0661 (6) | 0.5502 (2) | 0.9296 (4) | 0.0509 (9) | |
H21D | −0.1468 | 0.5109 | 0.8726 | 0.076* | |
H22D | −0.0925 | 0.6104 | 0.9041 | 0.076* | |
H23D | −0.1147 | 0.5419 | 1.0078 | 0.076* | |
C3D | 0.3101 (7) | 0.5866 (5) | 1.0106 (5) | 0.094 (2) | |
H31D | 0.4563 | 0.5613 | 1.0191 | 0.141* | |
H32D | 0.2590 | 0.5916 | 1.0887 | 0.141* | |
H33D | 0.3142 | 0.6444 | 0.9747 | 0.141* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0200 (8) | 0.0271 (9) | 0.0367 (10) | 0.0003 (7) | 0.0066 (7) | 0.0090 (7) |
O2 | 0.0475 (12) | 0.0301 (10) | 0.0363 (11) | −0.0044 (9) | 0.0074 (9) | −0.0026 (8) |
O3 | 0.0188 (8) | 0.0296 (9) | 0.0328 (9) | 0.0005 (7) | 0.0059 (7) | 0.0044 (8) |
N1 | 0.0159 (9) | 0.0234 (9) | 0.0304 (10) | 0.0030 (7) | 0.0053 (7) | 0.0032 (8) |
N2 | 0.0160 (9) | 0.0208 (9) | 0.0303 (10) | 0.0003 (7) | 0.0046 (8) | 0.0045 (8) |
N3 | 0.0237 (10) | 0.0212 (10) | 0.0363 (12) | 0.0008 (8) | 0.0071 (8) | −0.0046 (9) |
C1 | 0.0193 (10) | 0.0197 (10) | 0.0310 (12) | 0.0015 (9) | 0.0051 (9) | 0.0049 (9) |
C2 | 0.0252 (11) | 0.0301 (13) | 0.0286 (12) | 0.0026 (10) | 0.0022 (9) | 0.0064 (10) |
C3 | 0.0248 (11) | 0.0320 (13) | 0.0237 (11) | −0.0006 (10) | 0.0014 (9) | 0.0008 (10) |
C4 | 0.0224 (11) | 0.0345 (14) | 0.0278 (12) | −0.0012 (10) | 0.0024 (9) | 0.0005 (10) |
C5 | 0.0277 (12) | 0.0385 (15) | 0.0289 (13) | 0.0020 (11) | 0.0036 (10) | −0.0025 (11) |
C6 | 0.0339 (14) | 0.0320 (14) | 0.0251 (12) | −0.0023 (11) | 0.0009 (10) | −0.0020 (10) |
C7 | 0.0279 (13) | 0.0412 (15) | 0.0318 (13) | −0.0059 (11) | 0.0072 (10) | −0.0049 (12) |
C8 | 0.0213 (11) | 0.0400 (15) | 0.0311 (13) | 0.0001 (10) | 0.0038 (10) | −0.0017 (11) |
C9 | 0.0173 (10) | 0.0192 (10) | 0.0276 (11) | 0.0019 (8) | 0.0028 (8) | 0.0001 (9) |
C10 | 0.0151 (9) | 0.0192 (10) | 0.0266 (11) | 0.0001 (8) | 0.0022 (8) | 0.0030 (9) |
C11 | 0.0204 (10) | 0.0192 (11) | 0.0336 (13) | −0.0017 (8) | 0.0027 (9) | 0.0014 (9) |
C12 | 0.0197 (10) | 0.0172 (10) | 0.0292 (12) | −0.0029 (8) | 0.0038 (9) | 0.0011 (8) |
C13 | 0.0265 (11) | 0.0215 (11) | 0.0300 (12) | −0.0035 (9) | 0.0049 (9) | −0.0011 (9) |
C14 | 0.0243 (11) | 0.0170 (11) | 0.0296 (12) | −0.0009 (8) | 0.0038 (9) | 0.0020 (9) |
C15 | 0.0367 (14) | 0.0267 (12) | 0.0312 (13) | 0.0018 (11) | 0.0080 (10) | 0.0028 (10) |
C16 | 0.0542 (19) | 0.0377 (16) | 0.0263 (13) | −0.0017 (13) | 0.0012 (12) | 0.0041 (12) |
C17 | 0.0484 (17) | 0.0380 (16) | 0.0381 (15) | 0.0011 (14) | −0.0087 (13) | 0.0143 (13) |
C18 | 0.0311 (13) | 0.0295 (14) | 0.0477 (17) | 0.0020 (11) | −0.0037 (12) | 0.0063 (12) |
C19 | 0.0272 (11) | 0.0194 (11) | 0.0347 (13) | −0.0022 (9) | 0.0046 (10) | 0.0022 (10) |
C20 | 0.0191 (10) | 0.0212 (10) | 0.0234 (11) | 0.0023 (8) | 0.0012 (8) | −0.0019 (8) |
O1D | 0.0433 (12) | 0.0462 (13) | 0.0455 (12) | 0.0077 (11) | 0.0076 (10) | −0.0020 (11) |
N1D | 0.0350 (12) | 0.0415 (13) | 0.0339 (12) | 0.0042 (11) | 0.0012 (10) | 0.0027 (11) |
C1D | 0.0428 (16) | 0.0280 (13) | 0.0403 (16) | 0.0007 (11) | 0.0014 (13) | 0.0035 (12) |
C2D | 0.0373 (16) | 0.0400 (18) | 0.075 (3) | 0.0035 (13) | 0.0049 (16) | 0.0045 (17) |
C3D | 0.046 (2) | 0.145 (6) | 0.086 (3) | 0.009 (3) | −0.013 (2) | −0.074 (4) |
O1—C9 | 1.247 (3) | C10—C11 | 1.545 (3) |
O2—C6 | 1.363 (4) | C10—H101 | 1.0000 |
O2—H4 | 1.04 (5) | C11—C12 | 1.497 (3) |
O3—C20 | 1.234 (3) | C11—H111 | 0.9900 |
N1—C20 | 1.337 (3) | C11—H112 | 0.9900 |
N1—C1 | 1.453 (3) | C12—C13 | 1.368 (4) |
N1—H1 | 0.96 (3) | C12—C14 | 1.437 (4) |
N2—C9 | 1.333 (3) | C13—H131 | 0.9500 |
N2—C10 | 1.456 (3) | C14—C15 | 1.401 (4) |
N2—H2 | 0.87 (3) | C14—C19 | 1.418 (3) |
N3—C19 | 1.369 (4) | C15—C16 | 1.389 (4) |
N3—C13 | 1.371 (3) | C15—H151 | 0.9500 |
N3—H3 | 0.81 (4) | C16—C17 | 1.399 (5) |
C1—C9 | 1.512 (3) | C16—H161 | 0.9500 |
C1—C2 | 1.546 (4) | C17—C18 | 1.378 (5) |
C1—H11 | 1.0000 | C17—H171 | 0.9500 |
C2—C3 | 1.513 (4) | C18—C19 | 1.400 (4) |
C2—H21 | 0.9900 | C18—H181 | 0.9500 |
C2—H22 | 0.9900 | O1D—C1D | 1.231 (4) |
C3—C4 | 1.389 (4) | N1D—C1D | 1.324 (4) |
C3—C8 | 1.397 (4) | N1D—C3D | 1.445 (5) |
C4—C5 | 1.391 (4) | N1D—C2D | 1.446 (4) |
C4—H41 | 0.9500 | C1D—H1D | 1.03 (4) |
C5—C6 | 1.394 (4) | C2D—H21D | 0.9800 |
C5—H51 | 0.9500 | C2D—H22D | 0.9800 |
C6—C7 | 1.388 (4) | C2D—H23D | 0.9800 |
C7—C8 | 1.397 (4) | C3D—H31D | 0.9800 |
C7—H71 | 0.9500 | C3D—H32D | 0.9800 |
C8—H81 | 0.9500 | C3D—H33D | 0.9800 |
C10—C20 | 1.520 (3) | ||
C6—O2—H4 | 108 (3) | C12—C11—H111 | 108.9 |
C20—N1—C1 | 126.1 (2) | C10—C11—H111 | 108.9 |
C20—N1—H1 | 110 (2) | C12—C11—H112 | 108.9 |
C1—N1—H1 | 120 (2) | C10—C11—H112 | 108.9 |
C9—N2—C10 | 126.4 (2) | H111—C11—H112 | 107.7 |
C9—N2—H2 | 112 (2) | C13—C12—C14 | 106.2 (2) |
C10—N2—H2 | 121 (2) | C13—C12—C11 | 125.6 (2) |
C19—N3—C13 | 108.7 (2) | C14—C12—C11 | 128.2 (2) |
C19—N3—H3 | 122 (3) | C12—C13—N3 | 110.6 (2) |
C13—N3—H3 | 129 (3) | C12—C13—H131 | 124.7 |
N1—C1—C9 | 113.6 (2) | N3—C13—H131 | 124.7 |
N1—C1—C2 | 111.3 (2) | C15—C14—C19 | 119.0 (2) |
C9—C1—C2 | 110.1 (2) | C15—C14—C12 | 134.3 (2) |
N1—C1—H11 | 107.2 | C19—C14—C12 | 106.7 (2) |
C9—C1—H11 | 107.2 | C16—C15—C14 | 118.7 (3) |
C2—C1—H11 | 107.2 | C16—C15—H151 | 120.6 |
C3—C2—C1 | 113.7 (2) | C14—C15—H151 | 120.6 |
C3—C2—H21 | 108.8 | C15—C16—C17 | 121.3 (3) |
C1—C2—H21 | 108.8 | C15—C16—H161 | 119.3 |
C3—C2—H22 | 108.8 | C17—C16—H161 | 119.3 |
C1—C2—H22 | 108.8 | C18—C17—C16 | 121.2 (3) |
H21—C2—H22 | 107.7 | C18—C17—H171 | 119.4 |
C4—C3—C8 | 117.9 (3) | C16—C17—H171 | 119.4 |
C4—C3—C2 | 121.6 (2) | C17—C18—C19 | 117.8 (3) |
C8—C3—C2 | 120.5 (2) | C17—C18—H181 | 121.1 |
C3—C4—C5 | 121.8 (3) | C19—C18—H181 | 121.1 |
C3—C4—H41 | 119.1 | N3—C19—C18 | 130.3 (3) |
C5—C4—H41 | 119.1 | N3—C19—C14 | 107.9 (2) |
C4—C5—C6 | 119.7 (3) | C18—C19—C14 | 121.8 (3) |
C4—C5—H51 | 120.1 | O3—C20—N1 | 122.7 (2) |
C6—C5—H51 | 120.1 | O3—C20—C10 | 118.4 (2) |
O2—C6—C7 | 117.7 (3) | N1—C20—C10 | 118.9 (2) |
O2—C6—C5 | 123.0 (3) | C1D—N1D—C3D | 120.3 (3) |
C7—C6—C5 | 119.4 (3) | C1D—N1D—C2D | 121.5 (3) |
C6—C7—C8 | 120.3 (3) | C3D—N1D—C2D | 117.3 (3) |
C6—C7—H71 | 119.9 | O1D—C1D—N1D | 124.7 (3) |
C8—C7—H71 | 119.9 | O1D—C1D—H1D | 123 (2) |
C7—C8—C3 | 120.9 (3) | N1D—C1D—H1D | 112 (2) |
C7—C8—H81 | 119.6 | N1D—C2D—H21D | 109.5 |
C3—C8—H81 | 119.6 | N1D—C2D—H22D | 109.5 |
O1—C9—N2 | 122.6 (2) | H21D—C2D—H22D | 109.5 |
O1—C9—C1 | 118.1 (2) | N1D—C2D—H23D | 109.5 |
N2—C9—C1 | 119.3 (2) | H21D—C2D—H23D | 109.5 |
N2—C10—C20 | 113.8 (2) | H22D—C2D—H23D | 109.5 |
N2—C10—C11 | 111.9 (2) | N1D—C3D—H31D | 109.5 |
C20—C10—C11 | 108.22 (19) | N1D—C3D—H32D | 109.5 |
N2—C10—H101 | 107.5 | H31D—C3D—H32D | 109.5 |
C20—C10—H101 | 107.5 | N1D—C3D—H33D | 109.5 |
C11—C10—H101 | 107.5 | H31D—C3D—H33D | 109.5 |
C12—C11—C10 | 113.42 (19) | H32D—C3D—H33D | 109.5 |
N1—C1—C2—C3 | 62.3 (3) | C14—C12—C13—N3 | −0.2 (3) |
C1—C2—C3—C4 | 97.5 (3) | C11—C12—C13—N3 | −178.3 (2) |
N2—C10—C11—C12 | −55.4 (3) | C19—N3—C13—C12 | 0.7 (3) |
C10—C11—C12—C13 | 109.8 (3) | C13—C12—C14—C15 | 179.9 (3) |
C20—N1—C1—C9 | 16.1 (4) | C11—C12—C14—C15 | −2.1 (4) |
C20—N1—C1—C2 | −108.9 (3) | C13—C12—C14—C19 | −0.4 (3) |
C9—C1—C2—C3 | −64.6 (3) | C11—C12—C14—C19 | 177.6 (2) |
C1—C2—C3—C8 | −82.1 (3) | C19—C14—C15—C16 | −2.7 (4) |
C8—C3—C4—C5 | −0.1 (4) | C12—C14—C15—C16 | 177.0 (3) |
C2—C3—C4—C5 | −179.7 (2) | C14—C15—C16—C17 | 1.1 (4) |
C3—C4—C5—C6 | 1.2 (4) | C15—C16—C17—C18 | 0.8 (5) |
C4—C5—C6—O2 | 178.6 (3) | C16—C17—C18—C19 | −0.8 (5) |
C4—C5—C6—C7 | −1.2 (4) | C13—N3—C19—C18 | 176.7 (3) |
O2—C6—C7—C8 | −179.7 (3) | C13—N3—C19—C14 | −1.0 (3) |
C5—C6—C7—C8 | 0.1 (4) | C17—C18—C19—N3 | −178.3 (3) |
C6—C7—C8—C3 | 1.0 (4) | C17—C18—C19—C14 | −0.9 (4) |
C4—C3—C8—C7 | −1.0 (4) | C15—C14—C19—N3 | −179.4 (2) |
C2—C3—C8—C7 | 178.6 (3) | C12—C14—C19—N3 | 0.9 (3) |
C10—N2—C9—O1 | 178.7 (2) | C15—C14—C19—C18 | 2.7 (4) |
C10—N2—C9—C1 | −0.4 (4) | C12—C14—C19—C18 | −177.1 (2) |
N1—C1—C9—O1 | 170.0 (2) | C1—N1—C20—O3 | 171.3 (2) |
C2—C1—C9—O1 | −64.4 (3) | C1—N1—C20—C10 | −9.2 (4) |
N1—C1—C9—N2 | −10.8 (3) | N2—C10—C20—O3 | 176.5 (2) |
C2—C1—C9—N2 | 114.7 (2) | C11—C10—C20—O3 | −58.4 (3) |
C9—N2—C10—C20 | 7.7 (3) | N2—C10—C20—N1 | −3.0 (3) |
C9—N2—C10—C11 | −115.4 (3) | C11—C10—C20—N1 | 122.1 (2) |
C20—C10—C11—C12 | 178.4 (2) | C3D—N1D—C1D—O1D | 5.3 (6) |
C10—C11—C12—C14 | −67.9 (3) | C2D—N1D—C1D—O1D | 174.1 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1i | 0.96 (3) | 1.94 (3) | 2.902 (3) | 174 (3) |
N2—H2···O3ii | 0.87 (3) | 2.01 (3) | 2.884 (3) | 178 (3) |
N3—H3···O1iii | 0.81 (4) | 2.16 (4) | 2.851 (3) | 144 (3) |
O2—H4···O1D | 1.04 (5) | 1.59 (5) | 2.606 (3) | 163 (4) |
C1D—H1D···O2ii | 1.03 (4) | 2.89 (4) | 3.862 (4) | 158 |
C2D—H21D···O1Dii | 0.98 | 2.68 | 3.387 (4) | 129 |
C2D—H21D···O2ii | 0.98 | 2.70 | 3.671 (4) | 171 |
C2D—H22D···C15iii | 0.98 | 2.66 | 3.602 (4) | 163 |
C3D—H32D···C3iv | 0.98 | 2.80 | 3.660 (4) | 147 |
Symmetry codes: (i) x+1, y, z; (ii) x−1, y, z; (iii) −x, y+1/2, −z+1; (iv) −x+1, y+1/2, −z+2. |
Experimental details
Crystal data | |
Chemical formula | C20H19N3O3·C3H7NO |
Mr | 422.48 |
Crystal system, space group | Monoclinic, P21 |
Temperature (K) | 105 |
a, b, c (Å) | 6.1923 (2), 15.3873 (5), 11.3780 (3) |
β (°) | 96.661 (1) |
V (Å3) | 1076.81 (6) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.09 |
Crystal size (mm) | 0.80 × 0.65 × 0.20 |
Data collection | |
Diffractometer | Siemens SMART CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.800, 0.982 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 9514, 2786, 2454 |
Rint | 0.038 |
(sin θ/λ)max (Å−1) | 0.668 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.045, 0.122, 1.15 |
No. of reflections | 2786 |
No. of parameters | 297 |
No. of restraints | 1 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.23, −0.27 |
Computer programs: SMART (Bruker, 1998), SAINT (Bruker, 2001), SHELXS (Sheldrick, 2008), SHELXTL (Bruker, 2000).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1i | 0.96 (3) | 1.94 (3) | 2.902 (3) | 174 (3) |
N2—H2···O3ii | 0.87 (3) | 2.01 (3) | 2.884 (3) | 178 (3) |
N3—H3···O1iii | 0.81 (4) | 2.16 (4) | 2.851 (3) | 144 (3) |
O2—H4···O1D | 1.04 (5) | 1.59 (5) | 2.606 (3) | 163 (4) |
Symmetry codes: (i) x+1, y, z; (ii) x−1, y, z; (iii) −x, y+1/2, −z+1. |
Acknowledgements
The purchase of the diffractometer was made possible through support from the Research Council of Norway (NFR).
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The title compound, (3S,6S)-3-(4-hydroxsybenzyl)-6 -(1H-indol-3-yl)methylpiperazine-2,5-dione dimethylformamide solvate, (I), was obtained as the result of an attempt to crystallize the corresponding linear dipeptide Tyr-Trp from a dimethylformamide solution. In our laboratory we have previously observed similar cyclization reactions taking place for several other dipeptides including Asp-Ala (Görbitz, 1987), Ile-Ile (Görbitz & Hartviksen, 2006) and Val-Leu (unpublished results).
The crystal structure of (I) contains straight hydrogen-bonded tapes as seen in Fig. 2. A search in the Cambridge Structural Database (CSD; Version 5.28 of November 2006; Allen 2002) revealed 59 examples of such tapes (unperturbed e.g. by additional cyclic connections between the two Cα-atoms). The periodicity of this pattern, usually corresponding to a unit-cell parameter, shows a quite narrow distribution with 54 out of 59 observations in the range 6.06 to 6.26 Å, with 6.19 Å observed for (I) being close to the 6.16 Å average value. The full range observed in the CSD is from 6.01 to 6.57 Å, with the upper limit being represented by a distinct outlier (piperazine-2,5-dione:2,5-dihydroxyterephatlic acid 1:1, Luo & Palmore, 2002).
The carbonyl O atom of the cocrystallized dimethylformamide (DMF) solvent molecule accepts a H atom from the Tyr hydroxyl group, but the DMF molecule is also involved in a number of weaker hydrogen bonds (Table 2 and Fig. 2). This is in line with previous findings that DMF molecules are often more heavily involved in intermolecular interactions than one traditionally would expect (Görbitz & Hersleth, 2000).
From the 20 naturally occurring amino acids one can construct 210 different cyclic dipeptides (as opposed to 400 linear dipeptides). Single crystal structural studies have been presented for 20 of them, including four structures with Tyr or Trp residues: cyclo(Gly-Trp) (Morris et al., 1974), cyclo(Trp-Trp) DMSO solvate (Grant et al., 1999), cyclo(Leu-Tyr) hydrate (Suguna et al., 1984), and cyclo(Ser-Tyr) hydrate (Lin & Webb, 1973). From a conformational point of view these four peptides resemble (I) as well as each other, and all except cyclo(Trp-Trp) crystallize in the P21 space group. Nevertheless, each cyclic dipeptide has its own unique packing arrangement, also when all other compounds with a diketopiperazine moiety are considered.