metal-organic compounds
(6-Oxido-2-oxo-1,2-dihydropyrimidine-5-carboxylato-κ2O5,O6)(4-oxido-2-oxo-1,2-dihydropyrimidin-3-ium-5-carboxylato-κ2O4,O5)bis(1,10-phenanthroline-κ2N,N′)erbium(III) dihydrate
aCollege of Chemistry and Chemical Engineering, Guangxi Normal University, Gulin 541004, People's Republic of China, and bDepartment of Chemistry, University of Malaya, 50603, Kuala Lumpur, Malaysia
*Correspondence e-mail: seikweng@um.edu.my
The erbium(III) atom in the title compound, [Er(C5H2N2O4)(C5H3N2O4)(C12H8N2)2]·2H2O, is located on a twofold rotation axis and chelated by two 1,10-phenanthroline heterocycles as well as by a 2,4-dihydroxypyrimidine-5-carboxylate monoanion and a 2,4-dihydroxypyrimidine-5-carboxylate dianion in a square-antiprismatic coordination geometry.
Related literature
For the structure of 2,4-dihydroxypyridimine-5-carboxylic acid, see: Law et al. (2004). This erbium compound is isostructural with the europium, terbium and ytterbium analogs; see Sun & Jin (2004) for their detailed description.
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2006); cell SAINT (Bruker, 2006); data reduction: SAINT; method used to solve structure: atomic coordinates taken from published analogs (Sun & Jin, 2004); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: X-SEED (Barbour, 2001); software used to prepare material for publication: publCIF (Westrip, 2008).
Supporting information
10.1107/S1600536808001487/xu2400sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536808001487/xu2400Isup2.hkl
2,4-Dihydroxypyrimidine-5-carboxylic acid (0.044 g, 0.25 mmol), erbium trichloride hexahydrate (0.096 g, 0.25 mmol), 1,10-phenanthroline (0.050 g, 0.25 mmol), sodium hydroxide (0.010 g, 0.25 mmol) and water (15 ml) was sealed in a 25-ml, Teflon-lined, stainless-steel Parr bomb. The bomb was heated to 383 K for 120 h. It was then cooled over 48 h to give red crystals in 90% yield. CH&N elemental analysis. Found/Calc. for C34H25ErN8O10: C 46.01; H 2.81, N 13.49% (46.78, 2.89, 12.84%).
Carbon-bound hydrogen atoms were generated geometrically, and were included in the refinements in the riding model approximation, as well the nitrogen-bound ones. The oxygen-bound ones were placed in chemically sensible positions on the basis of hydrogen bonding interactions. The final difference Fourier map had a large peak near Er1.
Data collection: APEX2 (Bruker, 2006); cell
SAINT (Bruker, 2006); data reduction: SAINT (Bruker, 2006); program(s) used to solve structure: Atomic coordinates taken from published analogs (Sun & Jin, 2004); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: X-SEED (Barbour, 2001); software used to prepare material for publication: publCIF (Westrip, 2008).Fig. 1. Thermal ellipsoid plot of Er(C12H8N2)2(C5H3N2O4)(C5H2N2O4).2H2O drawn at the 50% probability level. Hydrogen atoms are drawn as spheres of arbitrary radii. | |
Fig. 2. Square antiprismatic coordination geometry of Er. |
[Er(C5H2N2O4)(C5H3N2O4)(C12H8N2)2]·2H2O | F(000) = 1732 |
Mr = 872.88 | Dx = 1.804 Mg m−3 |
Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -C 2yc | Cell parameters from 8216 reflections |
a = 17.1602 (7) Å | θ = 2.3–28.5° |
b = 14.4170 (6) Å | µ = 2.69 mm−1 |
c = 13.2433 (5) Å | T = 295 K |
β = 101.159 (1)° | Prism, red |
V = 3214.4 (2) Å3 | 0.18 × 0.10 × 0.08 mm |
Z = 4 |
Bruker APEXII diffractometer | 3680 independent reflections |
Radiation source: fine-focus sealed tube | 3495 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.024 |
ϕ and ω scans | θmax = 27.5°, θmin = 1.9° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −22→22 |
Tmin = 0.645, Tmax = 0.814 | k = −18→18 |
13567 measured reflections | l = −17→17 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.024 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.061 | H-atom parameters constrained |
S = 1.05 | w = 1/[σ2(Fo2) + (0.0387P)2 + 2.1981P] where P = (Fo2 + 2Fc2)/3 |
3680 reflections | (Δ/σ)max = 0.001 |
240 parameters | Δρmax = 1.13 e Å−3 |
0 restraints | Δρmin = −0.38 e Å−3 |
[Er(C5H2N2O4)(C5H3N2O4)(C12H8N2)2]·2H2O | V = 3214.4 (2) Å3 |
Mr = 872.88 | Z = 4 |
Monoclinic, C2/c | Mo Kα radiation |
a = 17.1602 (7) Å | µ = 2.69 mm−1 |
b = 14.4170 (6) Å | T = 295 K |
c = 13.2433 (5) Å | 0.18 × 0.10 × 0.08 mm |
β = 101.159 (1)° |
Bruker APEXII diffractometer | 3680 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 3495 reflections with I > 2σ(I) |
Tmin = 0.645, Tmax = 0.814 | Rint = 0.024 |
13567 measured reflections |
R[F2 > 2σ(F2)] = 0.024 | 0 restraints |
wR(F2) = 0.061 | H-atom parameters constrained |
S = 1.05 | Δρmax = 1.13 e Å−3 |
3680 reflections | Δρmin = −0.38 e Å−3 |
240 parameters |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
Er1 | 0.5000 | 0.612675 (9) | 0.7500 | 0.02099 (6) | |
O1 | 0.26939 (16) | 0.37986 (14) | 0.36337 (19) | 0.0436 (6) | |
O2 | 0.40471 (11) | 0.56690 (12) | 0.61245 (13) | 0.0293 (4) | |
O3 | 0.43054 (11) | 0.50209 (13) | 0.81183 (13) | 0.0312 (4) | |
O4 | 0.34769 (14) | 0.39182 (12) | 0.84072 (15) | 0.0341 (5) | |
O1W | 0.1905 (2) | 0.3113 (2) | 0.1608 (2) | 0.0912 (11) | |
H1W1 | 0.2254 | 0.3253 | 0.2146 | 0.137* | |
H1W2 | 0.2024 | 0.2603 | 0.1354 | 0.137* | |
N1 | 0.28276 (16) | 0.33178 (16) | 0.53134 (18) | 0.0367 (5) | |
H1N | 0.2588 | 0.2802 | 0.5137 | 0.055* | 0.50 |
N2 | 0.33356 (13) | 0.47408 (15) | 0.49382 (16) | 0.0276 (5) | |
H2N | 0.3385 | 0.5157 | 0.4489 | 0.041* | |
N3 | 0.53478 (13) | 0.69505 (15) | 0.59349 (17) | 0.0278 (5) | |
N4 | 0.59394 (13) | 0.74961 (15) | 0.78945 (17) | 0.0289 (5) | |
C1 | 0.29379 (18) | 0.39350 (17) | 0.4575 (2) | 0.0295 (6) | |
C2 | 0.36564 (14) | 0.49369 (17) | 0.59430 (18) | 0.0229 (5) | |
C3 | 0.35025 (15) | 0.42826 (17) | 0.66835 (18) | 0.0248 (5) | |
C4 | 0.30868 (18) | 0.3506 (2) | 0.6303 (2) | 0.0342 (6) | |
H4 | 0.2977 | 0.3074 | 0.6777 | 0.041* | |
C5 | 0.37729 (15) | 0.44133 (17) | 0.78069 (18) | 0.0247 (5) | |
C6 | 0.50987 (17) | 0.6671 (2) | 0.4970 (2) | 0.0346 (6) | |
H6 | 0.4906 | 0.6070 | 0.4856 | 0.042* | |
C7 | 0.5112 (2) | 0.7236 (3) | 0.4122 (2) | 0.0486 (8) | |
H7 | 0.4946 | 0.7008 | 0.3459 | 0.058* | |
C8 | 0.5368 (2) | 0.8118 (3) | 0.4271 (3) | 0.0556 (9) | |
H8 | 0.5352 | 0.8511 | 0.3710 | 0.067* | |
C9 | 0.5659 (2) | 0.8442 (2) | 0.5267 (3) | 0.0438 (7) | |
C10 | 0.56432 (16) | 0.78248 (18) | 0.6084 (2) | 0.0307 (6) | |
C11 | 0.5963 (2) | 0.9365 (3) | 0.5497 (3) | 0.0598 (10) | |
H11 | 0.5950 | 0.9787 | 0.4963 | 0.072* | |
C12 | 0.6260 (2) | 0.9627 (2) | 0.6459 (3) | 0.0586 (10) | |
H12 | 0.6457 | 1.0226 | 0.6582 | 0.070* | |
C13 | 0.6285 (2) | 0.9006 (2) | 0.7304 (3) | 0.0414 (7) | |
C14 | 0.6628 (2) | 0.9230 (2) | 0.8322 (3) | 0.0501 (9) | |
H14 | 0.6846 | 0.9816 | 0.8475 | 0.060* | |
C15 | 0.6646 (2) | 0.8603 (2) | 0.9083 (3) | 0.0464 (8) | |
H15 | 0.6891 | 0.8743 | 0.9755 | 0.056* | |
C16 | 0.62887 (17) | 0.7737 (2) | 0.8840 (2) | 0.0365 (6) | |
H16 | 0.6297 | 0.7310 | 0.9369 | 0.044* | |
C17 | 0.59569 (16) | 0.81116 (18) | 0.7125 (2) | 0.0289 (5) |
U11 | U22 | U33 | U12 | U13 | U23 | |
Er1 | 0.02696 (10) | 0.01677 (9) | 0.01709 (9) | 0.000 | −0.00108 (6) | 0.000 |
O1 | 0.0548 (14) | 0.0334 (12) | 0.0366 (12) | −0.0041 (9) | −0.0064 (11) | 0.0014 (8) |
O2 | 0.0391 (10) | 0.0236 (9) | 0.0213 (9) | −0.0088 (8) | −0.0037 (7) | 0.0029 (7) |
O3 | 0.0431 (11) | 0.0295 (10) | 0.0185 (8) | −0.0109 (8) | 0.0001 (8) | −0.0010 (7) |
O4 | 0.0482 (13) | 0.0337 (11) | 0.0205 (10) | −0.0117 (8) | 0.0067 (9) | 0.0007 (7) |
O1W | 0.138 (3) | 0.0561 (18) | 0.0636 (19) | 0.0005 (19) | −0.020 (2) | 0.0078 (15) |
N1 | 0.0543 (15) | 0.0264 (11) | 0.0258 (11) | −0.0119 (11) | −0.0012 (10) | −0.0033 (9) |
N2 | 0.0369 (12) | 0.0260 (11) | 0.0170 (10) | −0.0052 (9) | −0.0019 (8) | 0.0019 (8) |
N3 | 0.0300 (11) | 0.0262 (11) | 0.0268 (11) | 0.0003 (9) | 0.0044 (9) | 0.0020 (9) |
N4 | 0.0279 (11) | 0.0259 (11) | 0.0318 (12) | −0.0052 (9) | 0.0032 (9) | −0.0043 (9) |
C1 | 0.0366 (15) | 0.0267 (13) | 0.0216 (13) | 0.0007 (10) | −0.0037 (11) | −0.0030 (9) |
C2 | 0.0263 (12) | 0.0213 (11) | 0.0193 (11) | 0.0005 (9) | −0.0001 (9) | 0.0004 (9) |
C3 | 0.0339 (13) | 0.0218 (12) | 0.0179 (11) | −0.0048 (10) | 0.0030 (10) | −0.0021 (9) |
C4 | 0.0488 (17) | 0.0265 (14) | 0.0258 (13) | −0.0117 (12) | 0.0038 (12) | 0.0025 (11) |
C5 | 0.0325 (13) | 0.0224 (12) | 0.0185 (11) | −0.0001 (10) | 0.0033 (9) | 0.0000 (9) |
C6 | 0.0353 (14) | 0.0391 (15) | 0.0288 (14) | −0.0033 (12) | 0.0046 (11) | −0.0005 (12) |
C7 | 0.0508 (19) | 0.069 (2) | 0.0261 (15) | −0.0105 (17) | 0.0074 (13) | 0.0035 (15) |
C8 | 0.064 (2) | 0.065 (2) | 0.0360 (18) | −0.0098 (19) | 0.0076 (16) | 0.0225 (16) |
C9 | 0.0465 (18) | 0.0383 (17) | 0.0466 (18) | −0.0032 (14) | 0.0093 (14) | 0.0143 (14) |
C10 | 0.0317 (13) | 0.0262 (13) | 0.0349 (14) | −0.0009 (11) | 0.0085 (11) | 0.0053 (11) |
C11 | 0.073 (3) | 0.040 (2) | 0.066 (3) | −0.0157 (18) | 0.014 (2) | 0.0201 (18) |
C12 | 0.066 (2) | 0.0325 (18) | 0.079 (3) | −0.0160 (16) | 0.017 (2) | 0.0063 (17) |
C13 | 0.0412 (17) | 0.0255 (14) | 0.060 (2) | −0.0080 (12) | 0.0156 (15) | −0.0060 (13) |
C14 | 0.0486 (19) | 0.0355 (17) | 0.068 (2) | −0.0169 (15) | 0.0155 (17) | −0.0174 (17) |
C15 | 0.0415 (17) | 0.0477 (18) | 0.049 (2) | −0.0117 (15) | 0.0063 (15) | −0.0215 (16) |
C16 | 0.0352 (15) | 0.0401 (16) | 0.0330 (15) | −0.0091 (12) | 0.0036 (12) | −0.0077 (12) |
C17 | 0.0269 (13) | 0.0220 (12) | 0.0383 (15) | −0.0022 (10) | 0.0075 (11) | −0.0009 (10) |
Er1—O2 | 2.297 (2) | C2—C3 | 1.422 (3) |
Er1—O2i | 2.297 (2) | C3—C4 | 1.371 (4) |
Er1—O3 | 2.238 (2) | C3—C5 | 1.482 (3) |
Er1—O3i | 2.238 (2) | C4—H4 | 0.9300 |
Er1—N3 | 2.558 (2) | C6—C7 | 1.391 (4) |
Er1—N3i | 2.558 (2) | C6—H6 | 0.9300 |
Er1—N4 | 2.538 (2) | C7—C8 | 1.346 (5) |
Er1—N4i | 2.538 (2) | C7—H7 | 0.9300 |
O1—C1 | 1.252 (4) | C8—C9 | 1.398 (5) |
O2—C2 | 1.248 (3) | C8—H8 | 0.9300 |
O3—C5 | 1.275 (3) | C9—C10 | 1.405 (4) |
O4—C5 | 1.247 (3) | C9—C11 | 1.440 (5) |
O1W—H1W1 | 0.85 | C10—C17 | 1.441 (4) |
O1W—H1W2 | 0.85 | C11—C12 | 1.332 (6) |
N1—C4 | 1.327 (3) | C11—H11 | 0.9300 |
N1—C1 | 1.362 (4) | C12—C13 | 1.428 (5) |
N1—H1N | 0.8600 | C12—H12 | 0.9300 |
N2—C2 | 1.368 (3) | C13—C14 | 1.400 (5) |
N2—C1 | 1.385 (3) | C13—C17 | 1.409 (4) |
N2—H2N | 0.8600 | C14—C15 | 1.349 (6) |
N3—C6 | 1.329 (3) | C14—H14 | 0.9300 |
N3—C10 | 1.359 (3) | C15—C16 | 1.401 (4) |
N4—C16 | 1.326 (4) | C15—H15 | 0.9300 |
N4—C17 | 1.356 (3) | C16—H16 | 0.9300 |
O2—Er1—O2i | 146.6 (1) | N1—C4—H4 | 117.2 |
O2—Er1—O3 | 74.8 (1) | C3—C4—H4 | 117.2 |
O2—Er1—O3i | 81.6 (1) | O4—C5—O3 | 122.8 (2) |
O2—Er1—N3 | 74.5 (1) | O4—C5—C3 | 118.7 (2) |
O2—Er1—N3i | 122.3 (1) | O3—C5—C3 | 118.5 (2) |
O2—Er1—N4 | 135.5 (1) | N3—C6—C7 | 123.1 (3) |
O2—Er1—N4i | 74.6 (1) | N3—C6—H6 | 118.5 |
O3—Er1—O3i | 89.2 (1) | C7—C6—H6 | 118.5 |
O3—Er1—N3 | 148.4 (1) | C8—C7—C6 | 119.4 (3) |
O3—Er1—N3i | 79.0 (1) | C8—C7—H7 | 120.3 |
O3—Er1—N4 | 147.2 (1) | C6—C7—H7 | 120.3 |
O3—Er1—N4i | 105.5 (1) | C7—C8—C9 | 120.0 (3) |
N3—Er1—N3i | 124.7 (1) | C7—C8—H8 | 120.0 |
N3—Er1—N4 | 64.4 (1) | C9—C8—H8 | 120.0 |
N3—Er1—N4i | 73.2 (1) | C8—C9—C10 | 117.3 (3) |
N4—Er1—N4i | 77.9 (1) | C8—C9—C11 | 123.9 (3) |
C2—O2—Er1 | 131.99 (15) | C10—C9—C11 | 118.9 (3) |
C5—O3—Er1 | 140.34 (16) | N3—C10—C9 | 122.6 (3) |
H1W1—O1W—H1W2 | 110.3 | N3—C10—C17 | 117.7 (2) |
C4—N1—C1 | 120.6 (2) | C9—C10—C17 | 119.7 (3) |
C4—N1—H1N | 119.7 | C12—C11—C9 | 121.4 (3) |
C1—N1—H1N | 119.7 | C12—C11—H11 | 119.3 |
C2—N2—C1 | 126.1 (2) | C9—C11—H11 | 119.3 |
C2—N2—H2N | 116.9 | C11—C12—C13 | 121.3 (3) |
C1—N2—H2N | 116.9 | C11—C12—H12 | 119.3 |
C6—N3—C10 | 117.5 (2) | C13—C12—H12 | 119.3 |
C6—N3—Er1 | 123.81 (18) | C14—C13—C17 | 116.9 (3) |
C10—N3—Er1 | 116.89 (17) | C14—C13—C12 | 123.6 (3) |
C16—N4—C17 | 117.8 (2) | C17—C13—C12 | 119.5 (3) |
C16—N4—Er1 | 123.46 (19) | C15—C14—C13 | 120.6 (3) |
C17—N4—Er1 | 117.38 (16) | C15—C14—H14 | 119.7 |
O1—C1—N1 | 123.1 (2) | C13—C14—H14 | 119.7 |
O1—C1—N2 | 121.6 (2) | C14—C15—C16 | 118.7 (3) |
N1—C1—N2 | 115.2 (2) | C14—C15—H15 | 120.7 |
O2—C2—N2 | 117.5 (2) | C16—C15—H15 | 120.7 |
O2—C2—C3 | 126.3 (2) | N4—C16—C15 | 123.2 (3) |
N2—C2—C3 | 116.1 (2) | N4—C16—H16 | 118.4 |
C4—C3—C2 | 116.2 (2) | C15—C16—H16 | 118.4 |
C4—C3—C5 | 120.8 (2) | N4—C17—C13 | 122.6 (3) |
C2—C3—C5 | 123.0 (2) | N4—C17—C10 | 118.2 (2) |
N1—C4—C3 | 125.5 (3) | C13—C17—C10 | 119.2 (3) |
O3—Er1—O2—C2 | −23.0 (2) | O2—C2—C3—C4 | −177.3 (3) |
O3i—Er1—O2—C2 | 68.4 (2) | N2—C2—C3—C4 | 3.4 (4) |
O2i—Er1—O2—C2 | 23.4 (2) | O2—C2—C3—C5 | 2.4 (4) |
N4—Er1—O2—C2 | 172.0 (2) | N2—C2—C3—C5 | −176.9 (2) |
N4i—Er1—O2—C2 | −134.2 (2) | C1—N1—C4—C3 | −2.7 (5) |
N3i—Er1—O2—C2 | −89.1 (2) | C2—C3—C4—N1 | 0.6 (5) |
N3—Er1—O2—C2 | 149.3 (2) | C5—C3—C4—N1 | −179.1 (3) |
O3i—Er1—O3—C5 | −72.0 (3) | Er1—O3—C5—O4 | −175.83 (19) |
O2—Er1—O3—C5 | 9.5 (3) | Er1—O3—C5—C3 | 5.0 (4) |
O2i—Er1—O3—C5 | −146.7 (3) | C4—C3—C5—O4 | −15.3 (4) |
N4—Er1—O3—C5 | 169.9 (2) | C2—C3—C5—O4 | 165.0 (3) |
N4i—Er1—O3—C5 | 78.3 (3) | C4—C3—C5—O3 | 163.9 (3) |
N3i—Er1—O3—C5 | 137.6 (3) | C2—C3—C5—O3 | −15.7 (4) |
N3—Er1—O3—C5 | −4.7 (3) | C10—N3—C6—C7 | −1.4 (4) |
O3—Er1—N3—C6 | −6.7 (3) | Er1—N3—C6—C7 | 162.9 (2) |
O3i—Er1—N3—C6 | 63.3 (2) | N3—C6—C7—C8 | −1.8 (5) |
O2—Er1—N3—C6 | −20.9 (2) | C6—C7—C8—C9 | 3.6 (6) |
O2i—Er1—N3—C6 | 127.3 (2) | C7—C8—C9—C10 | −2.2 (5) |
N4—Er1—N3—C6 | 176.5 (2) | C7—C8—C9—C11 | 178.5 (4) |
N4i—Er1—N3—C6 | −99.1 (2) | C6—N3—C10—C9 | 2.9 (4) |
N3i—Er1—N3—C6 | −139.7 (2) | Er1—N3—C10—C9 | −162.5 (2) |
O3—Er1—N3—C10 | 157.69 (17) | C6—N3—C10—C17 | −176.4 (2) |
O3i—Er1—N3—C10 | −132.33 (19) | Er1—N3—C10—C17 | 18.2 (3) |
O2—Er1—N3—C10 | 143.5 (2) | C8—C9—C10—N3 | −1.1 (5) |
O2i—Er1—N3—C10 | −68.3 (2) | C11—C9—C10—N3 | 178.3 (3) |
N4—Er1—N3—C10 | −19.07 (17) | C8—C9—C10—C17 | 178.2 (3) |
N4i—Er1—N3—C10 | 65.31 (19) | C11—C9—C10—C17 | −2.4 (5) |
N3i—Er1—N3—C10 | 24.68 (17) | C8—C9—C11—C12 | −177.4 (4) |
O3—Er1—N4—C16 | 8.6 (3) | C10—C9—C11—C12 | 3.2 (6) |
O3i—Er1—N4—C16 | −105.1 (2) | C9—C11—C12—C13 | −0.6 (7) |
O2—Er1—N4—C16 | 161.2 (2) | C11—C12—C13—C14 | 176.5 (4) |
O2i—Er1—N4—C16 | −36.1 (2) | C11—C12—C13—C17 | −2.7 (6) |
N4i—Er1—N4—C16 | 108.5 (2) | C17—C13—C14—C15 | 0.7 (5) |
N3i—Er1—N4—C16 | 41.9 (2) | C12—C13—C14—C15 | −178.6 (4) |
N3—Er1—N4—C16 | −174.5 (2) | C13—C14—C15—C16 | −2.3 (5) |
O3—Er1—N4—C17 | −157.77 (17) | C17—N4—C16—C15 | 2.3 (4) |
O3i—Er1—N4—C17 | 88.48 (19) | Er1—N4—C16—C15 | −164.0 (2) |
O2—Er1—N4—C17 | −5.2 (2) | C14—C15—C16—N4 | 0.8 (5) |
O2i—Er1—N4—C17 | 157.4 (2) | C16—N4—C17—C13 | −4.1 (4) |
N4i—Er1—N4—C17 | −57.88 (17) | Er1—N4—C17—C13 | 163.1 (2) |
N3i—Er1—N4—C17 | −124.5 (2) | C16—N4—C17—C10 | 174.5 (2) |
N3—Er1—N4—C17 | 19.09 (18) | Er1—N4—C17—C10 | −18.3 (3) |
C4—N1—C1—O1 | −178.8 (3) | C14—C13—C17—N4 | 2.6 (4) |
C4—N1—C1—N2 | 0.5 (4) | C12—C13—C17—N4 | −178.1 (3) |
C2—N2—C1—O1 | −176.8 (3) | C14—C13—C17—C10 | −175.9 (3) |
C2—N2—C1—N1 | 3.9 (4) | C12—C13—C17—C10 | 3.4 (4) |
Er1—O2—C2—N2 | −158.37 (17) | N3—C10—C17—N4 | −0.1 (4) |
Er1—O2—C2—C3 | 22.3 (4) | C9—C10—C17—N4 | −179.4 (3) |
C1—N2—C2—O2 | 174.7 (3) | N3—C10—C17—C13 | 178.5 (3) |
C1—N2—C2—C3 | −5.9 (4) | C9—C10—C17—C13 | −0.8 (4) |
Symmetry code: (i) −x+1, y, −z+3/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1n···N1ii | 0.86 | 1.82 | 2.675 (5) | 174 |
N2—H2n···O4iii | 0.86 | 1.99 | 2.846 (3) | 178 |
O1w—H1w1···O1 | 0.85 | 2.12 | 2.933 (4) | 157 |
O1w—H1w2···O4ii | 0.85 | 2.40 | 3.000 (4) | 128 |
Symmetry codes: (ii) −x+1/2, −y+1/2, −z+1; (iii) x, −y+1, z−1/2. |
Experimental details
Crystal data | |
Chemical formula | [Er(C5H2N2O4)(C5H3N2O4)(C12H8N2)2]·2H2O |
Mr | 872.88 |
Crystal system, space group | Monoclinic, C2/c |
Temperature (K) | 295 |
a, b, c (Å) | 17.1602 (7), 14.4170 (6), 13.2433 (5) |
β (°) | 101.159 (1) |
V (Å3) | 3214.4 (2) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 2.69 |
Crystal size (mm) | 0.18 × 0.10 × 0.08 |
Data collection | |
Diffractometer | Bruker APEXII diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.645, 0.814 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 13567, 3680, 3495 |
Rint | 0.024 |
(sin θ/λ)max (Å−1) | 0.650 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.024, 0.061, 1.05 |
No. of reflections | 3680 |
No. of parameters | 240 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 1.13, −0.38 |
Computer programs: APEX2 (Bruker, 2006), SAINT (Bruker, 2006), Atomic coordinates taken from published analogs (Sun & Jin, 2004), SHELXL97 (Sheldrick, 2008), X-SEED (Barbour, 2001), publCIF (Westrip, 2008).
Er1—O2 | 2.297 (2) | Er1—N3 | 2.558 (2) |
Er1—O3 | 2.238 (2) | Er1—N4 | 2.538 (2) |
O2—Er1—O2i | 146.6 (1) | O3—Er1—N3 | 148.4 (1) |
O2—Er1—O3 | 74.8 (1) | O3—Er1—N3i | 79.0 (1) |
O2—Er1—O3i | 81.6 (1) | O3—Er1—N4 | 147.2 (1) |
O2—Er1—N3 | 74.5 (1) | O3—Er1—N4i | 105.5 (1) |
O2—Er1—N3i | 122.3 (1) | N3—Er1—N3i | 124.7 (1) |
O2—Er1—N4 | 135.5 (1) | N3—Er1—N4 | 64.4 (1) |
O2—Er1—N4i | 74.6 (1) | N3—Er1—N4i | 73.2 (1) |
O3—Er1—O3i | 89.2 (1) | N4—Er1—N4i | 77.9 (1) |
Symmetry code: (i) −x+1, y, −z+3/2. |
Acknowledgements
The authors thank the Scientifc Research Foundation of Guangxi Normal University, China, the Science Foundation of Guangxi Province, China (Grant No. 0542021) and the University of Malaya for supporting this study.
References
Barbour, L. J. (2001). J. Supramol. Chem., 1, 189–191. CrossRef CAS Google Scholar
Bruker (2006). APEX2 (Version 1.22A) and SAINT (Version 7.12A). Bruker AXS Inc., Madison, Winconsin, USA. Google Scholar
Law, G.-L., Szeto, L. & Wong, W.-T. (2004). Acta Cryst. E60, o1072–o1074. Web of Science CSD CrossRef IUCr Journals Google Scholar
Sheldrick, G. M. (1996). SADABS. University of Göttingen, Germany. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Sun, C.-Y. & Jin, L. P. (2004). Polyhedron, 23, 2085–2093. Web of Science CSD CrossRef CAS Google Scholar
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2,4-Dihydroxypyrimidine-5-carboxylic acid (uracil-5-carboxylic acid, isoorotic acid) in the form of the singly-, doubly- and triply-deprotonated ion furnishes a number of compounds with both main group and transition metals in which the anion functions in a variety of binding modes. The acid itself exists as hydrated molecules held together by extensive hydrogen bonds (Law et al., 2004). The anion typically uses the 5-carboxylate and the 4-oxo/hydroxy oxygen atoms to chelate as this furnishes a six-membered chelate ring that confers stability.
The 1,10-phenanthroline-chelated rare-earth compounds, Ln(C12H8N2)2(C5H3N2O4)(C5H2N2O4).2H2O (Ln = Eu, Tb and Yb) represent the first examples of mononuclear lanthanum derivatives of the acid (Sun & Jin, 2004). The present erbium analog is isostructural with these, whose structures have been described in detail.