metal-organic compounds
Diaqua(nitrato-κ2O,O′)bis(L-phenylalaninato-κ2O,O′)lead(II) nitrate
aDEP Facultad de Ciencias Químicas, UANL, Guerrero y Progreso S/N, Col. Treviño, 64570 Monterrey, NL, Mexico, and bDepartamento de Química Inorgánica y Nuclear, Facultad de Química, UNAM, 04510 México, DF, Mexico
*Correspondence e-mail: sylvain_bernes@hotmail.com
In the title complex, [Pb(C9H11NO2)2(NO3)(H2O)2]NO3, the cation is a monomeric species including zwitterionic aminoacids. In both rotation of the NH3+ groups about their C—N bonds is blocked by intermolecular N—H⋯O hydrogen bonds. Assuming a limit for Pb—O bond lengths of 3 Å, the PbII ion is coordinated by eight O atoms. Each phenylalaninate ligand coordinates asymmetrically, with one short and one long Pb—O bond. Coordinated water molecules are also found at significantly different distances, while the bidentate nitrate ion coordinates symmetrically. The resulting [PbIIO8] core is hemi-directed, with a void placed almost trans to a carboxylate group. However, the 6s2 lone pair of the metal center can not be considered as stereochemically active, as a non-coordinating O atom of a nitrate belonging to a symmetry-related cation is placed in the empty hemisphere, with a short Pb⋯O separation of 3.035 (10) Å.
Related literature
A useful classification of Pb complexes into holo- and hemi-directed arrangements of ligands has been proposed by Shimoni-Livny et al. (1998), which allows the prediction of the character of the Pb lone pair. A complex containing zwitterionic phenylalaninate has been reported (Apfelbaum-Tibika & Bino, 1984). Recently, a polymeric PbII complex of neutral phenylalanine has been described (Marandi & Shahbakhsh, 2007).
Experimental
Crystal data
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Data collection: XSCANS (Siemens, 1996); cell XSCANS; data reduction: XSCANS; program(s) used to solve structure: SHELXTL-Plus (Sheldrick, 2008); program(s) used to refine structure: SHELXTL-Plus; molecular graphics: SHELXTL-Plus and Mercury (Macrae et al., 2006); software used to prepare material for publication: SHELXTL-Plus.
Supporting information
10.1107/S1600536808006995/ez2121sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536808006995/ez2121Isup2.hkl
An amount of Pb(NO3)2 (1 mmol, 0.331 g) was dissolved in 80 ml of previously degassed and distilled water. Solid L-phenylalanine (2 mmol, 0.330 g, Sigma) was added in small fractions with magnetic stirring, dissolving upon coordination to the metal ion. After the complete addition with continuous stirring, pH was adjusted to 5.3 by dropwise addition of 0.01 M NaOH. The solution was left to rest, and colourless needles were collected after one week.
In order to avoid too large differences between displacement parameters in the coordinated nitrate anion, atoms N21, O21, O22 and O23 were restrained, with a standard deviation of 0.01 Å2, to have the same Uij components. Almost all H atoms were detected in a difference map. They were however placed in idealized positions, and refined as riding to their parent atoms. Bond lengths were fixed to 0.85 (OH), 0.92 (NH), 0.93 (aromatic CH), 0.97 (methylene CH2) and 0.98 Å (methine CH). Isotropic displacement parameters were calculated as Uiso(H) = 1.2 Ueq(carrier C) for C-bonded H atoms, and Uiso(H) = 1.5 Ueq(carrier atom) otherwise. Rigid NH3 groups were allowed to rotate about their C—N bonds.
Data collection: XSCANS (Siemens, 1996); cell
XSCANS (Siemens, 1996); data reduction: XSCANS (Siemens, 1996); program(s) used to solve structure: SHELXTL-Plus (Sheldrick, 2008); program(s) used to refine structure: SHELXTL-Plus (Sheldrick, 2008); molecular graphics: SHELXTL-Plus (Sheldrick, 2008) and Mercury (Macrae et al., 2006); software used to prepare material for publication: SHELXTL-Plus (Sheldrick, 2008).Fig. 1. The asymmetric unit of (I) showing the atom numbering scheme, with displacement ellipsoids at the 30% probability level. | |
Fig. 2. Two symmetry-related molecules in the crystal structure, omitting H atoms and non-coordinated nitrate ions. The blue plane is calculated using atoms Pb1/O1/O3/O4/O21 (spheres of arbitrary radii) and corresponds to the equatorial plane defining the hemidirected ligand arrangement. The short inter-cation contact is shown as a dashed line. Symmetry code: (i) 1 + x, y, z. |
[Pb(C9H11NO2)2(NO3)(H2O)2]NO3 | F(000) = 1360 |
Mr = 697.62 | Dx = 1.854 Mg m−3 |
Orthorhombic, P212121 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2ac 2ab | Cell parameters from 83 reflections |
a = 5.3851 (9) Å | θ = 4.7–14.1° |
b = 13.5599 (17) Å | µ = 6.82 mm−1 |
c = 34.235 (4) Å | T = 298 K |
V = 2499.9 (6) Å3 | Needle, colourless |
Z = 4 | 0.60 × 0.20 × 0.18 mm |
Bruker P4 diffractometer | 4026 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.027 |
Graphite monochromator | θmax = 29.0°, θmin = 1.6° |
ω scans | h = −7→2 |
Absorption correction: ψ scan (XSCANS; Siemens, 1996) | k = −1→18 |
Tmin = 0.160, Tmax = 0.294 | l = −1→46 |
5243 measured reflections | 3 standard reflections every 97 reflections |
4948 independent reflections | intensity decay: 1% |
Refinement on F2 | Hydrogen site location: inferred from neighbouring sites |
Least-squares matrix: full | H-atom parameters constrained |
R[F2 > 2σ(F2)] = 0.047 | w = 1/[σ2(Fo2) + (0.044P)2 + 6.7647P] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.110 | (Δ/σ)max = 0.001 |
S = 1.06 | Δρmax = 1.61 e Å−3 |
4948 reflections | Δρmin = −2.35 e Å−3 |
319 parameters | Extinction correction: SHELXTL-Plus (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
18 restraints | Extinction coefficient: 0.0034 (3) |
0 constraints | Absolute structure: Flack (1983), 1153 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: −0.024 (14) |
Secondary atom site location: difference Fourier map |
[Pb(C9H11NO2)2(NO3)(H2O)2]NO3 | V = 2499.9 (6) Å3 |
Mr = 697.62 | Z = 4 |
Orthorhombic, P212121 | Mo Kα radiation |
a = 5.3851 (9) Å | µ = 6.82 mm−1 |
b = 13.5599 (17) Å | T = 298 K |
c = 34.235 (4) Å | 0.60 × 0.20 × 0.18 mm |
Bruker P4 diffractometer | 4026 reflections with I > 2σ(I) |
Absorption correction: ψ scan (XSCANS; Siemens, 1996) | Rint = 0.027 |
Tmin = 0.160, Tmax = 0.294 | 3 standard reflections every 97 reflections |
5243 measured reflections | intensity decay: 1% |
4948 independent reflections |
R[F2 > 2σ(F2)] = 0.047 | H-atom parameters constrained |
wR(F2) = 0.110 | Δρmax = 1.61 e Å−3 |
S = 1.06 | Δρmin = −2.35 e Å−3 |
4948 reflections | Absolute structure: Flack (1983), 1153 Friedel pairs |
319 parameters | Absolute structure parameter: −0.024 (14) |
18 restraints |
x | y | z | Uiso*/Ueq | ||
Pb1 | 0.77229 (7) | 0.50814 (2) | 0.280652 (9) | 0.04579 (14) | |
C1 | 0.586 (2) | 0.3234 (7) | 0.3200 (3) | 0.044 (2) | |
N1 | 0.4874 (15) | 0.1511 (5) | 0.3341 (2) | 0.0444 (18) | |
H1A | 0.4767 | 0.1481 | 0.3074 | 0.067* | |
H1B | 0.3683 | 0.1109 | 0.3450 | 0.067* | |
H1C | 0.6423 | 0.1303 | 0.3420 | 0.067* | |
O1 | 0.5070 (14) | 0.4129 (4) | 0.3202 (2) | 0.0543 (19) | |
C2 | 0.4473 (19) | 0.2538 (6) | 0.3472 (3) | 0.040 (2) | |
H2A | 0.2695 | 0.2689 | 0.3460 | 0.047* | |
O2 | 0.7618 (16) | 0.2944 (4) | 0.3007 (2) | 0.063 (2) | |
C3 | 0.542 (2) | 0.2689 (7) | 0.3900 (3) | 0.049 (2) | |
H3A | 0.7103 | 0.2441 | 0.3920 | 0.059* | |
H3B | 0.5457 | 0.3389 | 0.3957 | 0.059* | |
C4 | 0.383 (2) | 0.2178 (8) | 0.4199 (3) | 0.052 (3) | |
C5 | 0.424 (3) | 0.1204 (9) | 0.4308 (3) | 0.072 (3) | |
H5A | 0.5568 | 0.0861 | 0.4199 | 0.086* | |
C6 | 0.274 (3) | 0.0743 (11) | 0.4570 (4) | 0.092 (4) | |
H6A | 0.3058 | 0.0091 | 0.4638 | 0.110* | |
C7 | 0.081 (4) | 0.1218 (18) | 0.4732 (4) | 0.113 (8) | |
H7A | −0.0191 | 0.0892 | 0.4912 | 0.135* | |
C8 | 0.030 (3) | 0.2169 (18) | 0.4634 (4) | 0.105 (7) | |
H8A | −0.1051 | 0.2494 | 0.4746 | 0.127* | |
C9 | 0.182 (2) | 0.2651 (10) | 0.4365 (3) | 0.067 (3) | |
H9A | 0.1476 | 0.3300 | 0.4296 | 0.080* | |
C11 | 0.5983 (19) | 0.6746 (6) | 0.3283 (3) | 0.037 (2) | |
N11 | 0.2477 (15) | 0.7919 (4) | 0.3286 (2) | 0.0433 (16) | |
H11A | 0.2942 | 0.8134 | 0.3042 | 0.065* | |
H11B | 0.1714 | 0.8425 | 0.3419 | 0.065* | |
H11C | 0.1392 | 0.7399 | 0.3262 | 0.065* | |
O11 | 0.4650 (14) | 0.6227 (4) | 0.3079 (2) | 0.0532 (18) | |
C12 | 0.4715 (18) | 0.7594 (6) | 0.3506 (2) | 0.035 (2) | |
H12A | 0.5875 | 0.8148 | 0.3527 | 0.042* | |
O12 | 0.8305 (13) | 0.6650 (5) | 0.3327 (2) | 0.0514 (18) | |
C13 | 0.390 (2) | 0.7277 (8) | 0.3918 (2) | 0.049 (2) | |
H13A | 0.3070 | 0.7829 | 0.4043 | 0.059* | |
H13B | 0.2697 | 0.6747 | 0.3895 | 0.059* | |
C14 | 0.597 (2) | 0.6940 (8) | 0.4175 (3) | 0.055 (3) | |
C15 | 0.644 (3) | 0.5949 (10) | 0.4225 (4) | 0.085 (4) | |
H15A | 0.5448 | 0.5489 | 0.4099 | 0.102* | |
C16 | 0.837 (4) | 0.5621 (15) | 0.4461 (5) | 0.119 (6) | |
H16A | 0.8706 | 0.4951 | 0.4484 | 0.143* | |
C17 | 0.979 (4) | 0.631 (2) | 0.4661 (4) | 0.117 (8) | |
H17A | 1.1048 | 0.6092 | 0.4826 | 0.140* | |
C18 | 0.936 (3) | 0.7289 (17) | 0.4620 (4) | 0.096 (6) | |
H18A | 1.0341 | 0.7749 | 0.4750 | 0.115* | |
C19 | 0.742 (3) | 0.7592 (10) | 0.4377 (3) | 0.075 (3) | |
H19A | 0.7103 | 0.8264 | 0.4352 | 0.090* | |
O3 | 1.0478 (14) | 0.4723 (5) | 0.3424 (3) | 0.076 (2) | |
H31 | 1.0178 | 0.5014 | 0.3639 | 0.114* | |
H32 | 1.1827 | 0.4402 | 0.3402 | 0.114* | |
O4 | 0.8220 (16) | 0.6871 (5) | 0.23573 (17) | 0.0556 (18) | |
H41 | 0.7685 | 0.6839 | 0.2124 | 0.083* | |
H42 | 0.9634 | 0.7148 | 0.2371 | 0.083* | |
N21 | 0.290 (2) | 0.4320 (7) | 0.2286 (3) | 0.069 (2) | |
O21 | 0.314 (2) | 0.5177 (6) | 0.2350 (3) | 0.095 (2) | |
O22 | 0.465 (2) | 0.3712 (8) | 0.2319 (3) | 0.097 (3) | |
O23 | 0.0891 (19) | 0.3971 (8) | 0.2220 (3) | 0.094 (3) | |
N31 | −0.0031 (15) | 0.0127 (6) | 0.3617 (3) | 0.057 (2) | |
O31 | −0.1845 (18) | −0.0373 (6) | 0.3673 (3) | 0.089 (3) | |
O32 | −0.0270 (14) | 0.1025 (5) | 0.3546 (3) | 0.075 (3) | |
O33 | 0.2098 (14) | −0.0227 (5) | 0.3605 (3) | 0.074 (2) |
U11 | U22 | U33 | U12 | U13 | U23 | |
Pb1 | 0.0489 (2) | 0.03533 (16) | 0.05312 (19) | 0.00897 (17) | 0.01081 (17) | −0.00091 (13) |
C1 | 0.035 (6) | 0.038 (4) | 0.057 (6) | 0.001 (4) | 0.009 (5) | 0.000 (4) |
N1 | 0.044 (5) | 0.030 (3) | 0.059 (5) | 0.000 (3) | −0.003 (4) | −0.001 (3) |
O1 | 0.047 (4) | 0.033 (3) | 0.082 (5) | 0.011 (3) | 0.017 (4) | 0.012 (3) |
C2 | 0.038 (6) | 0.030 (4) | 0.051 (5) | −0.004 (4) | 0.004 (5) | 0.000 (4) |
O2 | 0.065 (5) | 0.043 (3) | 0.080 (4) | 0.001 (4) | 0.029 (5) | 0.006 (3) |
C3 | 0.043 (6) | 0.055 (5) | 0.047 (5) | 0.001 (5) | −0.004 (5) | −0.006 (4) |
C4 | 0.049 (6) | 0.066 (6) | 0.041 (5) | −0.007 (5) | −0.005 (5) | −0.009 (4) |
C5 | 0.080 (9) | 0.072 (7) | 0.064 (7) | 0.004 (7) | 0.009 (7) | 0.006 (6) |
C6 | 0.107 (13) | 0.100 (9) | 0.068 (7) | −0.026 (12) | 0.000 (9) | 0.022 (7) |
C7 | 0.089 (14) | 0.18 (2) | 0.073 (10) | −0.043 (16) | 0.007 (9) | 0.033 (12) |
C8 | 0.069 (11) | 0.21 (2) | 0.042 (7) | 0.006 (14) | 0.005 (7) | −0.022 (10) |
C9 | 0.048 (7) | 0.096 (8) | 0.057 (6) | 0.019 (7) | 0.002 (6) | −0.013 (5) |
C11 | 0.028 (5) | 0.031 (4) | 0.051 (5) | 0.001 (4) | 0.006 (4) | 0.008 (4) |
N11 | 0.036 (4) | 0.034 (3) | 0.060 (4) | 0.007 (4) | 0.001 (4) | 0.001 (3) |
O11 | 0.049 (5) | 0.036 (3) | 0.075 (5) | 0.001 (3) | −0.002 (4) | −0.016 (3) |
C12 | 0.035 (5) | 0.028 (3) | 0.043 (5) | 0.005 (4) | 0.001 (4) | −0.003 (3) |
O12 | 0.041 (4) | 0.051 (4) | 0.062 (4) | 0.020 (3) | 0.009 (3) | −0.001 (3) |
C13 | 0.049 (6) | 0.061 (6) | 0.037 (4) | 0.006 (5) | 0.013 (5) | 0.002 (4) |
C14 | 0.054 (7) | 0.071 (7) | 0.039 (5) | 0.005 (6) | 0.011 (5) | 0.007 (5) |
C15 | 0.089 (11) | 0.088 (9) | 0.078 (8) | 0.022 (9) | 0.005 (8) | 0.021 (7) |
C16 | 0.125 (16) | 0.128 (14) | 0.103 (12) | 0.057 (14) | 0.013 (12) | 0.032 (11) |
C17 | 0.088 (13) | 0.21 (3) | 0.049 (8) | 0.052 (16) | 0.009 (7) | 0.029 (11) |
C18 | 0.068 (11) | 0.167 (18) | 0.052 (8) | −0.016 (12) | 0.004 (7) | 0.009 (9) |
C19 | 0.069 (9) | 0.104 (8) | 0.052 (6) | −0.019 (9) | 0.014 (7) | 0.000 (5) |
O3 | 0.053 (4) | 0.051 (4) | 0.124 (7) | 0.006 (4) | −0.001 (5) | −0.004 (5) |
O4 | 0.064 (5) | 0.057 (4) | 0.046 (3) | −0.009 (4) | 0.014 (4) | 0.007 (3) |
N21 | 0.077 (5) | 0.058 (4) | 0.071 (4) | −0.001 (4) | 0.004 (5) | −0.015 (3) |
O21 | 0.109 (6) | 0.062 (4) | 0.113 (5) | −0.016 (5) | 0.013 (5) | −0.018 (4) |
O22 | 0.097 (7) | 0.108 (6) | 0.086 (5) | 0.035 (6) | 0.003 (5) | −0.019 (5) |
O23 | 0.076 (5) | 0.108 (6) | 0.099 (6) | −0.032 (5) | 0.009 (5) | −0.021 (5) |
N31 | 0.046 (5) | 0.042 (4) | 0.083 (6) | −0.002 (4) | 0.004 (4) | −0.017 (4) |
O31 | 0.069 (5) | 0.059 (4) | 0.137 (7) | −0.024 (5) | 0.011 (6) | 0.003 (5) |
O32 | 0.041 (4) | 0.033 (3) | 0.151 (8) | 0.007 (3) | −0.002 (5) | 0.002 (4) |
O33 | 0.042 (4) | 0.041 (3) | 0.138 (7) | 0.011 (4) | −0.006 (4) | −0.015 (4) |
Pb1—O1 | 2.354 (7) | C11—O12 | 1.266 (12) |
Pb1—O2 | 2.979 (6) | C11—C12 | 1.540 (12) |
Pb1—O11 | 2.453 (7) | N11—C12 | 1.488 (11) |
Pb1—O12 | 2.791 (7) | N11—H11A | 0.9200 |
Pb1—O3 | 2.628 (8) | N11—H11B | 0.9200 |
Pb1—O4 | 2.886 (6) | N11—H11C | 0.9200 |
Pb1—O21 | 2.927 (12) | C12—C13 | 1.541 (12) |
Pb1—O22 | 2.994 (11) | C12—H12A | 0.9800 |
C1—O2 | 1.217 (12) | C13—C14 | 1.490 (15) |
C1—O1 | 1.287 (11) | C13—H13A | 0.9700 |
C1—C2 | 1.522 (13) | C13—H13B | 0.9700 |
N1—C2 | 1.479 (10) | C14—C19 | 1.370 (16) |
N1—H1A | 0.9200 | C14—C15 | 1.380 (16) |
N1—H1B | 0.9200 | C15—C16 | 1.39 (2) |
N1—H1C | 0.9200 | C15—H15A | 0.9300 |
C2—C3 | 1.566 (13) | C16—C17 | 1.38 (3) |
C2—H2A | 0.9800 | C16—H16A | 0.9300 |
C3—C4 | 1.503 (15) | C17—C18 | 1.36 (3) |
C3—H3A | 0.9700 | C17—H17A | 0.9300 |
C3—H3B | 0.9700 | C18—C19 | 1.40 (2) |
C4—C9 | 1.379 (15) | C18—H18A | 0.9300 |
C4—C5 | 1.390 (16) | C19—H19A | 0.9300 |
C5—C6 | 1.359 (18) | O3—H31 | 0.8500 |
C5—H5A | 0.9300 | O3—H32 | 0.8500 |
C6—C7 | 1.34 (3) | O4—H41 | 0.8501 |
C6—H6A | 0.9300 | O4—H42 | 0.8500 |
C7—C8 | 1.36 (3) | N21—O21 | 1.189 (11) |
C7—H7A | 0.9300 | N21—O23 | 1.203 (14) |
C8—C9 | 1.40 (2) | N21—O22 | 1.257 (13) |
C8—H8A | 0.9300 | N31—O31 | 1.204 (11) |
C9—H9A | 0.9300 | N31—O33 | 1.243 (11) |
C11—O11 | 1.225 (12) | N31—O32 | 1.249 (11) |
O1—Pb1—O11 | 73.7 (2) | C8—C7—H7A | 119.7 |
O1—Pb1—O3 | 77.2 (3) | C7—C8—C9 | 119.1 (18) |
O11—Pb1—O3 | 101.1 (2) | C7—C8—H8A | 120.5 |
O1—Pb1—O12 | 96.8 (2) | C9—C8—H8A | 120.5 |
O11—Pb1—O12 | 49.5 (2) | C4—C9—C8 | 121.0 (14) |
O3—Pb1—O12 | 64.2 (2) | C4—C9—H9A | 119.5 |
O1—Pb1—O4 | 145.5 (2) | C8—C9—H9A | 119.5 |
O11—Pb1—O4 | 74.5 (2) | O11—C11—O12 | 126.0 (10) |
O3—Pb1—O4 | 122.1 (2) | O11—C11—C12 | 116.9 (9) |
O12—Pb1—O4 | 71.87 (19) | O12—C11—C12 | 117.2 (10) |
O1—Pb1—O21 | 79.6 (3) | C12—N11—H11A | 109.5 |
O11—Pb1—O21 | 66.8 (2) | C12—N11—H11B | 109.5 |
O3—Pb1—O21 | 156.2 (3) | H11A—N11—H11B | 109.5 |
O12—Pb1—O21 | 113.7 (2) | C12—N11—H11C | 109.5 |
O4—Pb1—O21 | 75.9 (2) | H11A—N11—H11C | 109.5 |
O1—Pb1—O2 | 47.3 (2) | H11B—N11—H11C | 109.5 |
O11—Pb1—O2 | 121.0 (2) | C11—O11—Pb1 | 100.7 (6) |
O3—Pb1—O2 | 69.2 (2) | N11—C12—C13 | 108.4 (8) |
O12—Pb1—O2 | 126.6 (2) | N11—C12—C11 | 109.3 (7) |
O4—Pb1—O2 | 160.55 (19) | C13—C12—C11 | 111.9 (7) |
O21—Pb1—O2 | 98.6 (2) | N11—C12—H12A | 109.1 |
O1—Pb1—O22 | 69.2 (3) | C13—C12—H12A | 109.1 |
O11—Pb1—O22 | 103.4 (3) | C11—C12—H12A | 109.1 |
O3—Pb1—O22 | 130.2 (3) | C11—O12—Pb1 | 83.8 (7) |
O12—Pb1—O22 | 152.9 (2) | C14—C13—C12 | 114.3 (9) |
O4—Pb1—O22 | 106.0 (3) | C14—C13—H13A | 108.7 |
O21—Pb1—O22 | 42.6 (2) | C12—C13—H13A | 108.7 |
O2—Pb1—O22 | 61.0 (3) | C14—C13—H13B | 108.7 |
O2—C1—O1 | 124.4 (9) | C12—C13—H13B | 108.7 |
O2—C1—C2 | 120.9 (8) | H13A—C13—H13B | 107.6 |
O1—C1—C2 | 114.7 (9) | C19—C14—C15 | 117.3 (12) |
C2—N1—H1A | 109.5 | C19—C14—C13 | 121.9 (11) |
C2—N1—H1B | 109.5 | C15—C14—C13 | 120.8 (12) |
H1A—N1—H1B | 109.5 | C14—C15—C16 | 121.6 (17) |
C2—N1—H1C | 109.5 | C14—C15—H15A | 119.2 |
H1A—N1—H1C | 109.5 | C16—C15—H15A | 119.2 |
H1B—N1—H1C | 109.5 | C17—C16—C15 | 119.1 (18) |
C1—O1—Pb1 | 108.2 (6) | C17—C16—H16A | 120.5 |
N1—C2—C1 | 109.1 (7) | C15—C16—H16A | 120.5 |
N1—C2—C3 | 111.0 (8) | C18—C17—C16 | 120.9 (19) |
C1—C2—C3 | 109.3 (8) | C18—C17—H17A | 119.6 |
N1—C2—H2A | 109.1 | C16—C17—H17A | 119.6 |
C1—C2—H2A | 109.1 | C17—C18—C19 | 118.5 (18) |
C3—C2—H2A | 109.1 | C17—C18—H18A | 120.8 |
C1—O2—Pb1 | 80.0 (5) | C19—C18—H18A | 120.8 |
C4—C3—C2 | 113.2 (9) | C14—C19—C18 | 122.6 (14) |
C4—C3—H3A | 108.9 | C14—C19—H19A | 118.7 |
C2—C3—H3A | 108.9 | C18—C19—H19A | 118.7 |
C4—C3—H3B | 108.9 | Pb1—O3—H31 | 120.1 |
C2—C3—H3B | 108.9 | Pb1—O3—H32 | 120.5 |
H3A—C3—H3B | 107.8 | H31—O3—H32 | 118.4 |
C9—C4—C5 | 117.2 (12) | Pb1—O4—H41 | 115.2 |
C9—C4—C3 | 120.8 (11) | Pb1—O4—H42 | 115.0 |
C5—C4—C3 | 121.9 (11) | H41—O4—H42 | 112.3 |
C6—C5—C4 | 121.3 (13) | O21—N21—O23 | 120.9 (13) |
C6—C5—H5A | 119.4 | O21—N21—O22 | 123.0 (14) |
C4—C5—H5A | 119.4 | O23—N21—O22 | 115.8 (10) |
C7—C6—C5 | 120.8 (16) | N21—O21—Pb1 | 98.3 (9) |
C7—C6—H6A | 119.6 | N21—O22—Pb1 | 93.3 (7) |
C5—C6—H6A | 119.6 | O31—N31—O33 | 122.4 (9) |
C6—C7—C8 | 120.7 (17) | O31—N31—O32 | 119.8 (9) |
C6—C7—H7A | 119.7 | O33—N31—O32 | 117.7 (9) |
O2—C1—O1—Pb1 | −3.4 (14) | O11—C11—C12—N11 | −28.1 (11) |
C2—C1—O1—Pb1 | 174.9 (7) | O12—C11—C12—N11 | 151.7 (9) |
O11—Pb1—O1—C1 | −177.6 (8) | O11—C11—C12—C13 | 91.9 (11) |
O3—Pb1—O1—C1 | −71.9 (7) | O12—C11—C12—C13 | −88.3 (11) |
O12—Pb1—O1—C1 | −133.3 (7) | O11—C11—O12—Pb1 | 0.7 (11) |
O4—Pb1—O1—C1 | 158.9 (6) | C12—C11—O12—Pb1 | −179.1 (7) |
O21—Pb1—O1—C1 | 113.7 (7) | O1—Pb1—O12—C11 | −62.1 (6) |
O2—Pb1—O1—C1 | 1.6 (6) | O11—Pb1—O12—C11 | −0.4 (6) |
O22—Pb1—O1—C1 | 70.7 (7) | O3—Pb1—O12—C11 | −134.3 (7) |
O2—C1—C2—N1 | −22.5 (14) | O4—Pb1—O12—C11 | 84.4 (6) |
O1—C1—C2—N1 | 159.1 (9) | O21—Pb1—O12—C11 | 19.5 (7) |
O2—C1—C2—C3 | 99.1 (11) | O2—Pb1—O12—C11 | −102.5 (6) |
O1—C1—C2—C3 | −79.4 (12) | O22—Pb1—O12—C11 | −5.4 (9) |
O1—C1—O2—Pb1 | 2.6 (11) | N11—C12—C13—C14 | −179.4 (8) |
C2—C1—O2—Pb1 | −175.7 (10) | C11—C12—C13—C14 | 60.0 (11) |
O1—Pb1—O2—C1 | −1.6 (7) | C12—C13—C14—C19 | 82.9 (12) |
O11—Pb1—O2—C1 | −0.7 (7) | C12—C13—C14—C15 | −99.1 (12) |
O3—Pb1—O2—C1 | 90.0 (7) | C19—C14—C15—C16 | −2.2 (19) |
O12—Pb1—O2—C1 | 59.6 (7) | C13—C14—C15—C16 | 179.6 (12) |
O4—Pb1—O2—C1 | −140.7 (8) | C14—C15—C16—C17 | 2 (2) |
O21—Pb1—O2—C1 | −68.7 (7) | C15—C16—C17—C18 | −2 (3) |
O22—Pb1—O2—C1 | −89.3 (7) | C16—C17—C18—C19 | 1 (3) |
N1—C2—C3—C4 | −70.6 (11) | C15—C14—C19—C18 | 1.6 (18) |
C1—C2—C3—C4 | 169.0 (9) | C13—C14—C19—C18 | 179.8 (11) |
C2—C3—C4—C9 | −89.2 (11) | C17—C18—C19—C14 | −1 (2) |
C2—C3—C4—C5 | 87.8 (13) | O23—N21—O21—Pb1 | 155.0 (10) |
C9—C4—C5—C6 | −0.8 (18) | O22—N21—O21—Pb1 | −18.1 (12) |
C3—C4—C5—C6 | −177.9 (11) | O1—Pb1—O21—N21 | −61.2 (8) |
C4—C5—C6—C7 | 0 (2) | O11—Pb1—O21—N21 | −137.8 (8) |
C5—C6—C7—C8 | 1 (2) | O3—Pb1—O21—N21 | −74.7 (9) |
C6—C7—C8—C9 | 0 (2) | O12—Pb1—O21—N21 | −154.2 (7) |
C5—C4—C9—C8 | 0.9 (17) | O4—Pb1—O21—N21 | 143.3 (8) |
C3—C4—C9—C8 | 178.1 (11) | O2—Pb1—O21—N21 | −17.7 (8) |
C7—C8—C9—C4 | 0 (2) | O22—Pb1—O21—N21 | 9.3 (7) |
O12—C11—O11—Pb1 | −0.8 (12) | O21—N21—O22—Pb1 | 17.6 (12) |
C12—C11—O11—Pb1 | 179.0 (6) | O23—N21—O22—Pb1 | −155.9 (9) |
O1—Pb1—O11—C11 | 114.7 (6) | O1—Pb1—O22—N21 | 88.6 (7) |
O3—Pb1—O11—C11 | 41.7 (6) | O11—Pb1—O22—N21 | 22.1 (7) |
O12—Pb1—O11—C11 | 0.4 (6) | O3—Pb1—O22—N21 | 139.5 (7) |
O4—Pb1—O11—C11 | −78.8 (6) | O12—Pb1—O22—N21 | 26.0 (11) |
O21—Pb1—O11—C11 | −159.8 (7) | O4—Pb1—O22—N21 | −55.3 (7) |
O2—Pb1—O11—C11 | 114.0 (6) | O21—Pb1—O22—N21 | −8.7 (6) |
O22—Pb1—O11—C11 | 178.0 (6) | O2—Pb1—O22—N21 | 140.4 (8) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···O4i | 0.92 | 2.25 | 2.956 (11) | 134 |
N1—H1B···O33 | 0.92 | 2.07 | 2.932 (11) | 155 |
N1—H1C···O32ii | 0.92 | 1.87 | 2.786 (11) | 173 |
N11—H11A···O22iii | 0.92 | 1.95 | 2.800 (12) | 152 |
N11—H11B···O33iv | 0.92 | 1.95 | 2.749 (9) | 145 |
N11—H11C···O12v | 0.92 | 1.96 | 2.833 (11) | 158 |
O3—H32···O1ii | 0.85 | 1.91 | 2.710 (11) | 156 |
O4—H42···O2vi | 0.85 | 2.24 | 2.949 (10) | 140 |
Symmetry codes: (i) −x+1, y−1/2, −z+1/2; (ii) x+1, y, z; (iii) −x+1, y+1/2, −z+1/2; (iv) x, y+1, z; (v) x−1, y, z; (vi) −x+2, y+1/2, −z+1/2. |
Experimental details
Crystal data | |
Chemical formula | [Pb(C9H11NO2)2(NO3)(H2O)2]NO3 |
Mr | 697.62 |
Crystal system, space group | Orthorhombic, P212121 |
Temperature (K) | 298 |
a, b, c (Å) | 5.3851 (9), 13.5599 (17), 34.235 (4) |
V (Å3) | 2499.9 (6) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 6.82 |
Crystal size (mm) | 0.60 × 0.20 × 0.18 |
Data collection | |
Diffractometer | Bruker P4 diffractometer |
Absorption correction | ψ scan (XSCANS; Siemens, 1996) |
Tmin, Tmax | 0.160, 0.294 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 5243, 4948, 4026 |
Rint | 0.027 |
(sin θ/λ)max (Å−1) | 0.682 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.047, 0.110, 1.06 |
No. of reflections | 4948 |
No. of parameters | 319 |
No. of restraints | 18 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 1.61, −2.35 |
Absolute structure | Flack (1983), 1153 Friedel pairs |
Absolute structure parameter | −0.024 (14) |
Computer programs: XSCANS (Siemens, 1996), SHELXTL-Plus (Sheldrick, 2008) and Mercury (Macrae et al., 2006).
Pb1—O1 | 2.354 (7) | Pb1—O3 | 2.628 (8) |
Pb1—O2 | 2.979 (6) | Pb1—O4 | 2.886 (6) |
Pb1—O11 | 2.453 (7) | Pb1—O21 | 2.927 (12) |
Pb1—O12 | 2.791 (7) | Pb1—O22 | 2.994 (11) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···O4i | 0.92 | 2.25 | 2.956 (11) | 133.6 |
N1—H1B···O33 | 0.92 | 2.07 | 2.932 (11) | 155.2 |
N1—H1C···O32ii | 0.92 | 1.87 | 2.786 (11) | 172.6 |
N11—H11A···O22iii | 0.92 | 1.95 | 2.800 (12) | 151.9 |
N11—H11B···O33iv | 0.92 | 1.95 | 2.749 (9) | 144.6 |
N11—H11C···O12v | 0.92 | 1.96 | 2.833 (11) | 157.7 |
Symmetry codes: (i) −x+1, y−1/2, −z+1/2; (ii) x+1, y, z; (iii) −x+1, y+1/2, −z+1/2; (iv) x, y+1, z; (v) x−1, y, z. |
Acknowledgements
SB is grateful to Universidad Autónoma de Puebla (Mexico) for diffractometer time.
References
Apfelbaum-Tibika, F. & Bino, A. (1984). Inorg. Chem. 23, 2902–2905. CSD CrossRef CAS Web of Science Google Scholar
Flack, H. D. (1983). Acta Cryst. A39, 876–881. CrossRef CAS Web of Science IUCr Journals Google Scholar
Macrae, C. F., Edgington, P. R., McCabe, P., Pidcock, E., Shields, G. P., Taylor, R., Towler, M. & van de Streek, J. (2006). J. Appl. Cryst. 39, 453–457. Web of Science CrossRef CAS IUCr Journals Google Scholar
Marandi, F. & Shahbakhsh, N. (2007). Z. Anorg. Allg. Chem. 633, 1137–1139. Web of Science CSD CrossRef CAS Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Shimoni-Livny, L., Glusker, J. P. & Bock, C. W. (1998). Inorg. Chem. 37, 1853–1867. Web of Science CrossRef CAS Google Scholar
Siemens (1996). XSCANS. Siemens Analytical X-ray Instruments Inc., Madison, Wisconsin, USA. Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
A particular feature characterizing PbII is the role of the 6s2 lone pair, which determines the arrangement of ligands coordinating to this metal ion. A stereochemically active lone pair is reflected in a hemidirected disposition of ligands around PbII, i.e. with all coordination bonds directed throughout only one hemisphere of an encompassing globe. In such a case, the lone pair is assumed to be localized in the empty hemisphere. The opposite situation is found in holodirected PbII complexes, in which the bonds to ligand atoms are distributed isotropically around the metal center (Shimoni-Livny et al., 1998). For coordination number 8, examples of either type of stereochemistry have been found. The complex reported here, (I), may be considered as a borderline case: although the coordination geometry seems to be hemidirected, the lone pair is probably not stereochemically active.
Complex (I) was prepared and crystallized from water (see Experimental) and is a part of our general research dealing with interactions between aminoacids and PbII. The naturally occurring aminoacid L-phenlyalanine is found in its zwitterionic form, and coordinates through O atoms of the carboxylate group. The coordination is asymmetric, however, all carboxylic O atoms may be considered as bonded to the metal ion, assuming a limit for Pb—O bond lengths of 3 Å. To date, only one complex that includes zwitterionic phenylalaninate has been characterized by X-ray diffraction (Apfelbaum-Tibika & Bino, 1984). This aminoacid, in its neutral form, was recently coordinated to PbII, forming a polymeric structure (Marandi & Shahbakhsh, 2007). In (I), rotation of NH3+ groups about their C—N bonds is blocked by intermolecular N—H···O hydrogen bonds, involving nitrate and water O atoms. The cation is completed by two water molecules, found at significantly different distances, and a bidentate nitrate ion, which coordinates in a symmetric manner. The asymmetric unit contains one cation and one nitrate counter-ion (Fig. 1).
The [PbIIO8] core structure in the cation is best described as hemidirected. The equatorial plane defining the encompassing globe contains atoms Pb1/O1/O3/O4/O21 (Fig. 2, top molecule). Although atoms O2 and O22 are placed in the anti-hemisphere, they are close to the equatorial plane, since they belong to carboxylate groups forming bite angles [O1—Pb1—O2: 47.3 (2)°; O21—Pb1—O22: 42.6 (2)]. Deviations of these atoms from the mean plane Pb1/O1/O3/O4/O21 are 1.81 (O2) and 1.84 Å (O22). This arrangement for O atoms around PbII is thus consistent with the presence of a stereochemically active lone pair 6s2, placed roughly trans to the carboxylate group O11/O12. However, a careful examination of the packing structure reveals a short Pb···O intermolecular contact, involving a nitrate group of a neighboring cation (Fig. 2, bottom molecule). The contact distance is sufficiently short, 3.035 (10) Å, to impede activity for the lone pair, which is thus expected to have little p character.