organic compounds
4-Methyl-6-phenylpyrimidin-2-amine
aQingdao University of Science and Technology, Qingdao 266061, People's Republic of China
*Correspondence e-mail: zjli126@126.com
The title compound, C11H11N3, was synthesized as part of our research into functionalized pyrimidines. It crystallizes with two independent molecules in the that differ only in the twist between the two aromatic rings; the torsion angles between the rings are 29.9 (2) and 45.1 (2)°. The crystal packing is dominated by intermolecular N—H⋯N hydrogen bonds between independent and equivalent molecules, forming an infinite three-dimensional network.
Related literature
For biological activity, see: Zhu & Yang (2005); Sherrington & Taskinen (2001); Ligthart et al. (2005). For a similar structure, see: Fun et al. (2006).
Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 2001); cell SMART; data reduction: SAINT (Bruker, 2001); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and local programs.
Supporting information
10.1107/S1600536808008003/fl2182sup1.cif
contains datablocks h-1, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536808008003/fl2182Isup2.hkl
The single crystals of the title compound were obtained by reaction of 1-phenylbutane-1,3-dione(0.2 mmol) with guanidine nitrate(0.2 mmol) by refluxing in DMF(50 ml). The product (yied 89%) was stirred in the DMF and single crystals of the title compound suitable for X-ray measurements were obtained by recrystallization from DMF at room temperature.
H atoms were fixed geometrically and allowed to ride on their attached atoms, with N—H=0.86, C—H=0.93 or 0.96 Å, and with Uiso(H) values set at 1.5 Ueq(C)(for CH3) or 1.2 Ueq(C)(for CH2, aromatic CH and NH2).
Data collection: SMART (Bruker, 2001); cell
SMART (Bruker, 2001); data reduction: SAINT (Bruker, 2001); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and local programs.C11H11N3 | F(000) = 784 |
Mr = 185.23 | Dx = 1.245 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 512 reflections |
a = 14.0558 (11) Å | θ = 2–22° |
b = 9.3808 (7) Å | µ = 0.08 mm−1 |
c = 18.5227 (12) Å | T = 273 K |
β = 125.950 (4)° | Block, colorless |
V = 1977.1 (2) Å3 | 0.30 × 0.20 × 0.20 mm |
Z = 8 |
Bruker SMART 1K CCD area-detector diffractometer | 3619 independent reflections |
Radiation source: fine-focus sealed tube | 2760 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.033 |
thin–slice ω scans | θmax = 25.4°, θmin = 1.8° |
Absorption correction: multi-scan (SADABS; Sheldrick, 2004) | h = −14→16 |
Tmin = 0.977, Tmax = 0.985 | k = −11→11 |
17472 measured reflections | l = −22→20 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.039 | H-atom parameters constrained |
wR(F2) = 0.113 | w = 1/[σ2(Fo2) + (0.0535P)2 + 0.393P] where P = (Fo2 + 2Fc2)/3 |
S = 1.04 | (Δ/σ)max = 0.001 |
3619 reflections | Δρmax = 0.21 e Å−3 |
256 parameters | Δρmin = −0.16 e Å−3 |
0 restraints | Extinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0088 (13) |
C11H11N3 | V = 1977.1 (2) Å3 |
Mr = 185.23 | Z = 8 |
Monoclinic, P21/c | Mo Kα radiation |
a = 14.0558 (11) Å | µ = 0.08 mm−1 |
b = 9.3808 (7) Å | T = 273 K |
c = 18.5227 (12) Å | 0.30 × 0.20 × 0.20 mm |
β = 125.950 (4)° |
Bruker SMART 1K CCD area-detector diffractometer | 3619 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2004) | 2760 reflections with I > 2σ(I) |
Tmin = 0.977, Tmax = 0.985 | Rint = 0.033 |
17472 measured reflections |
R[F2 > 2σ(F2)] = 0.039 | 0 restraints |
wR(F2) = 0.113 | H-atom parameters constrained |
S = 1.04 | Δρmax = 0.21 e Å−3 |
3619 reflections | Δρmin = −0.16 e Å−3 |
256 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
N1 | 1.09631 (12) | −0.10203 (14) | 0.46842 (9) | 0.0492 (4) | |
H1A | 1.0775 | −0.1072 | 0.5049 | 0.059* | |
H1B | 1.1590 | −0.1434 | 0.4810 | 0.059* | |
N2 | 1.06247 (11) | −0.02652 (14) | 0.33737 (9) | 0.0445 (3) | |
N3 | 0.93111 (10) | 0.03294 (12) | 0.37592 (8) | 0.0371 (3) | |
C1 | 0.69500 (14) | 0.10273 (16) | 0.31097 (10) | 0.0428 (4) | |
H1C | 0.7276 | 0.0232 | 0.3478 | 0.051* | |
C2 | 0.59049 (15) | 0.1585 (2) | 0.28979 (12) | 0.0537 (4) | |
H2B | 0.5531 | 0.1161 | 0.3123 | 0.064* | |
C3 | 0.54156 (17) | 0.2762 (2) | 0.23573 (13) | 0.0661 (5) | |
H3B | 0.4718 | 0.3143 | 0.2223 | 0.079* | |
C4 | 0.59617 (19) | 0.3378 (2) | 0.20139 (14) | 0.0711 (6) | |
H4A | 0.5627 | 0.4168 | 0.1642 | 0.085* | |
C5 | 0.70011 (16) | 0.28266 (19) | 0.22208 (12) | 0.0557 (5) | |
H5A | 0.7363 | 0.3249 | 0.1986 | 0.067* | |
C6 | 0.75185 (13) | 0.16463 (15) | 0.27758 (10) | 0.0395 (4) | |
C7 | 0.86232 (13) | 0.10283 (14) | 0.29811 (10) | 0.0370 (3) | |
C8 | 0.89113 (14) | 0.11063 (17) | 0.23828 (11) | 0.0462 (4) | |
H8A | 0.8435 | 0.1598 | 0.1847 | 0.055* | |
C9 | 1.02765 (13) | −0.02917 (15) | 0.39158 (10) | 0.0371 (3) | |
C10 | 0.99219 (14) | 0.04372 (18) | 0.26026 (11) | 0.0457 (4) | |
C11 | 1.02670 (19) | 0.0447 (3) | 0.19755 (13) | 0.0730 (6) | |
H11A | 1.1108 | 0.0476 | 0.2311 | 0.109* | |
H11B | 0.9937 | 0.1271 | 0.1597 | 0.109* | |
H11C | 0.9977 | −0.0400 | 0.1616 | 0.109* | |
N4 | 0.66133 (12) | 0.04458 (13) | 0.54000 (9) | 0.0466 (4) | |
H4B | 0.6190 | −0.0240 | 0.5377 | 0.056* | |
H4C | 0.7366 | 0.0363 | 0.5722 | 0.056* | |
N5 | 0.49149 (11) | 0.17062 (13) | 0.44429 (9) | 0.0440 (3) | |
N6 | 0.68078 (11) | 0.26712 (12) | 0.49771 (8) | 0.0379 (3) | |
C12 | 0.78707 (15) | 0.46852 (17) | 0.44133 (12) | 0.0494 (4) | |
H12A | 0.7997 | 0.3741 | 0.4339 | 0.059* | |
C13 | 0.85244 (17) | 0.5759 (2) | 0.43871 (13) | 0.0597 (5) | |
H13A | 0.9080 | 0.5533 | 0.4285 | 0.072* | |
C14 | 0.83596 (17) | 0.7156 (2) | 0.45107 (13) | 0.0644 (5) | |
H14A | 0.8809 | 0.7871 | 0.4499 | 0.077* | |
C15 | 0.75362 (19) | 0.74936 (19) | 0.46501 (15) | 0.0683 (6) | |
H15A | 0.7429 | 0.8438 | 0.4740 | 0.082* | |
C16 | 0.68603 (17) | 0.64335 (17) | 0.46588 (13) | 0.0566 (5) | |
H16A | 0.6286 | 0.6674 | 0.4738 | 0.068* | |
C17 | 0.70284 (13) | 0.50159 (15) | 0.45505 (10) | 0.0404 (4) | |
C18 | 0.62748 (13) | 0.38817 (15) | 0.45327 (10) | 0.0387 (4) | |
C19 | 0.50733 (14) | 0.40570 (17) | 0.40489 (11) | 0.0471 (4) | |
H19A | 0.4721 | 0.4919 | 0.3770 | 0.057* | |
C20 | 0.60975 (13) | 0.16496 (15) | 0.49325 (10) | 0.0376 (3) | |
C21 | 0.44081 (14) | 0.29142 (17) | 0.39901 (11) | 0.0475 (4) | |
C22 | 0.30886 (16) | 0.2934 (2) | 0.33834 (15) | 0.0744 (6) | |
H22A | 0.2787 | 0.2262 | 0.3593 | 0.112* | |
H22B | 0.2823 | 0.2681 | 0.2790 | 0.112* | |
H22C | 0.2812 | 0.3872 | 0.3379 | 0.112* |
U11 | U22 | U33 | U12 | U13 | U23 | |
N1 | 0.0443 (8) | 0.0635 (8) | 0.0430 (8) | 0.0156 (6) | 0.0274 (7) | 0.0176 (7) |
N2 | 0.0398 (7) | 0.0573 (8) | 0.0382 (8) | 0.0040 (6) | 0.0239 (7) | 0.0047 (6) |
N3 | 0.0349 (7) | 0.0422 (6) | 0.0335 (7) | 0.0002 (5) | 0.0196 (6) | 0.0031 (5) |
C1 | 0.0399 (9) | 0.0490 (8) | 0.0359 (9) | −0.0024 (7) | 0.0202 (8) | −0.0030 (7) |
C2 | 0.0455 (10) | 0.0717 (11) | 0.0479 (10) | −0.0032 (9) | 0.0296 (9) | −0.0102 (9) |
C3 | 0.0497 (11) | 0.0876 (14) | 0.0552 (12) | 0.0223 (10) | 0.0275 (10) | 0.0005 (10) |
C4 | 0.0712 (13) | 0.0751 (13) | 0.0652 (13) | 0.0330 (11) | 0.0391 (12) | 0.0220 (10) |
C5 | 0.0577 (11) | 0.0579 (10) | 0.0533 (11) | 0.0135 (8) | 0.0335 (10) | 0.0141 (8) |
C6 | 0.0377 (8) | 0.0430 (8) | 0.0328 (8) | 0.0007 (6) | 0.0179 (7) | −0.0014 (6) |
C7 | 0.0351 (8) | 0.0379 (7) | 0.0334 (8) | −0.0026 (6) | 0.0175 (7) | 0.0012 (6) |
C8 | 0.0432 (9) | 0.0582 (9) | 0.0353 (9) | 0.0052 (7) | 0.0220 (8) | 0.0109 (7) |
C9 | 0.0345 (8) | 0.0403 (7) | 0.0341 (8) | −0.0017 (6) | 0.0187 (7) | 0.0013 (6) |
C10 | 0.0414 (9) | 0.0617 (10) | 0.0351 (9) | 0.0007 (7) | 0.0230 (8) | 0.0039 (7) |
C11 | 0.0642 (13) | 0.1156 (17) | 0.0521 (12) | 0.0198 (12) | 0.0414 (11) | 0.0190 (11) |
N4 | 0.0396 (7) | 0.0426 (7) | 0.0574 (9) | 0.0040 (6) | 0.0284 (7) | 0.0128 (6) |
N5 | 0.0377 (7) | 0.0477 (7) | 0.0461 (8) | 0.0007 (6) | 0.0243 (7) | 0.0095 (6) |
N6 | 0.0385 (7) | 0.0396 (6) | 0.0385 (7) | −0.0002 (5) | 0.0242 (6) | 0.0026 (5) |
C12 | 0.0520 (10) | 0.0467 (9) | 0.0570 (11) | 0.0015 (7) | 0.0363 (9) | 0.0049 (7) |
C13 | 0.0559 (11) | 0.0681 (11) | 0.0666 (13) | −0.0038 (9) | 0.0425 (10) | 0.0081 (9) |
C14 | 0.0619 (12) | 0.0561 (11) | 0.0710 (13) | −0.0176 (9) | 0.0367 (11) | 0.0032 (9) |
C15 | 0.0769 (14) | 0.0424 (9) | 0.0895 (16) | −0.0120 (9) | 0.0510 (13) | −0.0080 (9) |
C16 | 0.0621 (11) | 0.0473 (9) | 0.0710 (12) | −0.0024 (8) | 0.0449 (10) | −0.0038 (8) |
C17 | 0.0416 (8) | 0.0405 (8) | 0.0381 (9) | −0.0007 (6) | 0.0229 (7) | 0.0038 (6) |
C18 | 0.0429 (9) | 0.0397 (8) | 0.0378 (9) | 0.0014 (6) | 0.0260 (8) | 0.0023 (6) |
C19 | 0.0448 (10) | 0.0448 (8) | 0.0519 (10) | 0.0071 (7) | 0.0286 (9) | 0.0139 (7) |
C20 | 0.0391 (8) | 0.0406 (7) | 0.0366 (8) | 0.0011 (6) | 0.0243 (7) | 0.0016 (6) |
C21 | 0.0399 (9) | 0.0543 (9) | 0.0481 (10) | 0.0049 (7) | 0.0258 (8) | 0.0125 (8) |
C22 | 0.0415 (10) | 0.0858 (14) | 0.0792 (15) | 0.0059 (10) | 0.0261 (11) | 0.0336 (12) |
N1—C9 | 1.3459 (19) | N4—C20 | 1.3467 (19) |
N1—H1A | 0.8600 | N4—H4B | 0.8600 |
N1—H1B | 0.8600 | N4—H4C | 0.8600 |
N2—C10 | 1.339 (2) | N5—C21 | 1.339 (2) |
N2—C9 | 1.3509 (19) | N5—C20 | 1.3484 (19) |
N3—C9 | 1.3426 (19) | N6—C18 | 1.3431 (18) |
N3—C7 | 1.3437 (18) | N6—C20 | 1.3510 (18) |
C1—C2 | 1.382 (2) | C12—C13 | 1.383 (2) |
C1—C6 | 1.392 (2) | C12—C17 | 1.384 (2) |
C1—H1C | 0.9300 | C12—H12A | 0.9300 |
C2—C3 | 1.374 (3) | C13—C14 | 1.373 (3) |
C2—H2B | 0.9300 | C13—H13A | 0.9300 |
C3—C4 | 1.379 (3) | C14—C15 | 1.363 (3) |
C3—H3B | 0.9300 | C14—H14A | 0.9300 |
C4—C5 | 1.375 (3) | C15—C16 | 1.382 (2) |
C4—H4A | 0.9300 | C15—H15A | 0.9300 |
C5—C6 | 1.391 (2) | C16—C17 | 1.386 (2) |
C5—H5A | 0.9300 | C16—H16A | 0.9300 |
C6—C7 | 1.483 (2) | C17—C18 | 1.488 (2) |
C7—C8 | 1.387 (2) | C18—C19 | 1.380 (2) |
C8—C10 | 1.378 (2) | C19—C21 | 1.384 (2) |
C8—H8A | 0.9300 | C19—H19A | 0.9300 |
C10—C11 | 1.499 (2) | C21—C22 | 1.502 (2) |
C11—H11A | 0.9600 | C22—H22A | 0.9600 |
C11—H11B | 0.9600 | C22—H22B | 0.9600 |
C11—H11C | 0.9600 | C22—H22C | 0.9600 |
C9—N1—H1A | 120.0 | C20—N4—H4B | 120.0 |
C9—N1—H1B | 120.0 | C20—N4—H4C | 120.0 |
H1A—N1—H1B | 120.0 | H4B—N4—H4C | 120.0 |
C10—N2—C9 | 116.07 (13) | C21—N5—C20 | 116.55 (13) |
C9—N3—C7 | 116.30 (12) | C18—N6—C20 | 115.84 (12) |
C2—C1—C6 | 120.52 (15) | C13—C12—C17 | 120.02 (16) |
C2—C1—H1C | 119.7 | C13—C12—H12A | 120.0 |
C6—C1—H1C | 119.7 | C17—C12—H12A | 120.0 |
C3—C2—C1 | 120.35 (17) | C14—C13—C12 | 120.58 (17) |
C3—C2—H2B | 119.8 | C14—C13—H13A | 119.7 |
C1—C2—H2B | 119.8 | C12—C13—H13A | 119.7 |
C2—C3—C4 | 119.81 (17) | C15—C14—C13 | 119.89 (16) |
C2—C3—H3B | 120.1 | C15—C14—H14A | 120.1 |
C4—C3—H3B | 120.1 | C13—C14—H14A | 120.1 |
C5—C4—C3 | 120.12 (18) | C14—C15—C16 | 120.07 (17) |
C5—C4—H4A | 119.9 | C14—C15—H15A | 120.0 |
C3—C4—H4A | 119.9 | C16—C15—H15A | 120.0 |
C4—C5—C6 | 120.95 (18) | C15—C16—C17 | 120.81 (17) |
C4—C5—H5A | 119.5 | C15—C16—H16A | 119.6 |
C6—C5—H5A | 119.5 | C17—C16—H16A | 119.6 |
C5—C6—C1 | 118.24 (15) | C12—C17—C16 | 118.59 (15) |
C5—C6—C7 | 121.01 (14) | C12—C17—C18 | 120.67 (14) |
C1—C6—C7 | 120.72 (13) | C16—C17—C18 | 120.65 (14) |
N3—C7—C8 | 121.26 (14) | N6—C18—C19 | 121.89 (13) |
N3—C7—C6 | 116.84 (13) | N6—C18—C17 | 117.21 (13) |
C8—C7—C6 | 121.83 (14) | C19—C18—C17 | 120.86 (13) |
C10—C8—C7 | 118.27 (14) | C18—C19—C21 | 118.12 (14) |
C10—C8—H8A | 120.9 | C18—C19—H19A | 120.9 |
C7—C8—H8A | 120.9 | C21—C19—H19A | 120.9 |
N3—C9—N1 | 117.08 (13) | N4—C20—N5 | 116.82 (13) |
N3—C9—N2 | 126.34 (13) | N4—C20—N6 | 117.13 (13) |
N1—C9—N2 | 116.58 (13) | N5—C20—N6 | 126.02 (13) |
N2—C10—C8 | 121.75 (14) | N5—C21—C19 | 121.31 (14) |
N2—C10—C11 | 117.25 (15) | N5—C21—C22 | 116.64 (15) |
C8—C10—C11 | 120.99 (15) | C19—C21—C22 | 121.98 (15) |
C10—C11—H11A | 109.5 | C21—C22—H22A | 109.5 |
C10—C11—H11B | 109.5 | C21—C22—H22B | 109.5 |
H11A—C11—H11B | 109.5 | H22A—C22—H22B | 109.5 |
C10—C11—H11C | 109.5 | C21—C22—H22C | 109.5 |
H11A—C11—H11C | 109.5 | H22A—C22—H22C | 109.5 |
H11B—C11—H11C | 109.5 | H22B—C22—H22C | 109.5 |
C6—C1—C2—C3 | −0.3 (2) | C17—C12—C13—C14 | 1.1 (3) |
C1—C2—C3—C4 | 0.9 (3) | C12—C13—C14—C15 | −0.8 (3) |
C2—C3—C4—C5 | −0.8 (3) | C13—C14—C15—C16 | −0.6 (3) |
C3—C4—C5—C6 | 0.0 (3) | C14—C15—C16—C17 | 1.7 (3) |
C4—C5—C6—C1 | 0.7 (3) | C13—C12—C17—C16 | 0.0 (3) |
C4—C5—C6—C7 | 178.44 (17) | C13—C12—C17—C18 | 176.76 (16) |
C2—C1—C6—C5 | −0.5 (2) | C15—C16—C17—C12 | −1.4 (3) |
C2—C1—C6—C7 | −178.31 (14) | C15—C16—C17—C18 | −178.14 (17) |
C9—N3—C7—C8 | −0.6 (2) | C20—N6—C18—C19 | −1.1 (2) |
C9—N3—C7—C6 | 176.50 (12) | C20—N6—C18—C17 | −178.59 (13) |
C5—C6—C7—N3 | 153.34 (15) | C12—C17—C18—N6 | 45.1 (2) |
C1—C6—C7—N3 | −28.9 (2) | C16—C17—C18—N6 | −138.24 (16) |
C5—C6—C7—C8 | −29.6 (2) | C12—C17—C18—C19 | −132.43 (17) |
C1—C6—C7—C8 | 148.13 (15) | C16—C17—C18—C19 | 44.2 (2) |
N3—C7—C8—C10 | 0.5 (2) | N6—C18—C19—C21 | −3.4 (2) |
C6—C7—C8—C10 | −176.46 (14) | C17—C18—C19—C21 | 174.05 (15) |
C7—N3—C9—N1 | −178.71 (13) | C21—N5—C20—N4 | 179.01 (14) |
C7—N3—C9—N2 | 0.8 (2) | C21—N5—C20—N6 | −2.9 (2) |
C10—N2—C9—N3 | −0.9 (2) | C18—N6—C20—N4 | −177.49 (13) |
C10—N2—C9—N1 | 178.64 (14) | C18—N6—C20—N5 | 4.5 (2) |
C9—N2—C10—C8 | 0.7 (2) | C20—N5—C21—C19 | −2.0 (2) |
C9—N2—C10—C11 | −178.21 (16) | C20—N5—C21—C22 | 174.92 (16) |
C7—C8—C10—N2 | −0.6 (2) | C18—C19—C21—N5 | 5.0 (3) |
C7—C8—C10—C11 | 178.35 (17) | C18—C19—C21—C22 | −171.76 (18) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···N3i | 0.86 | 2.38 | 3.1918 (18) | 157 |
N1—H1B···N6i | 0.86 | 2.35 | 3.2095 (18) | 175 |
N4—H4C···N2i | 0.86 | 2.29 | 3.1474 (19) | 176 |
N4—H4B···N5ii | 0.86 | 2.24 | 3.0834 (18) | 166 |
Symmetry codes: (i) −x+2, −y, −z+1; (ii) −x+1, −y, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C11H11N3 |
Mr | 185.23 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 273 |
a, b, c (Å) | 14.0558 (11), 9.3808 (7), 18.5227 (12) |
β (°) | 125.950 (4) |
V (Å3) | 1977.1 (2) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 0.08 |
Crystal size (mm) | 0.30 × 0.20 × 0.20 |
Data collection | |
Diffractometer | Bruker SMART 1K CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 2004) |
Tmin, Tmax | 0.977, 0.985 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 17472, 3619, 2760 |
Rint | 0.033 |
(sin θ/λ)max (Å−1) | 0.604 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.039, 0.113, 1.04 |
No. of reflections | 3619 |
No. of parameters | 256 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.21, −0.16 |
Computer programs: SMART (Bruker, 2001), SAINT (Bruker, 2001), SHELXTL (Sheldrick, 2008) and local programs.
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···N3i | 0.86 | 2.38 | 3.1918 (18) | 156.6 |
N1—H1B···N6i | 0.86 | 2.35 | 3.2095 (18) | 174.6 |
N4—H4C···N2i | 0.86 | 2.29 | 3.1474 (19) | 176.4 |
N4—H4B···N5ii | 0.86 | 2.24 | 3.0834 (18) | 166.2 |
Symmetry codes: (i) −x+2, −y, −z+1; (ii) −x+1, −y, −z+1. |
Acknowledgements
The authors thank the Natural Science Foundation of Shandong Province (grant No. Y2005F08).
References
Bruker (2001). SMART and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Fun, H.-K., Goswami, S., Jana, S. & Chantrapromma, S. (2006). Acta Cryst. E62, o5332–o5334. Web of Science CSD CrossRef IUCr Journals Google Scholar
Ligthart, G. B. W. L., Ohkawa, H., Sijbesma, R. P. & Meijer, E. W. (2005). J. Am. Chem. Soc. 127, 810–811. Web of Science CrossRef PubMed CAS Google Scholar
Sheldrick, G. M. (2004). SADABS. University of Göttingen, Germany. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Sherrington, D. C. & Taskinen, K. A. (2001). Chem. Soc. Rev. 30, 83–93. Web of Science CrossRef CAS Google Scholar
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Pyrimidines are broadly used in the preparation of pesticides and medications (Zhu & Yang, 2005). Functionalized pyrimidines are important for the synthesis of purine- and pteridine-related compounds and also for multiple hydrogen-bonding interactions that play a role in molecular recognition and supramolecular chemistry (Sherrington & Taskinen, 2001; Ligthart et al., 2005). In the title compound, (I), (fig. 1) there are two molecules per asymmetric unit that differ only in the twist between the two aromatic rings with dihedral angles between the phenyl and pyrimidine rings of 29.41 (2)° 46.32 (3)°. Bond lengths and angles for (I) are generally normal (Fun et al., 2006).
In the packing there are intermolecular N—H···N hydrogen bonds that link each independent molecule to related self molecules as well as to the second molecule in the asymmetric unit to create an infinite network of hydrogen bonded molecules (Table 1, Fig. 2).