organic compounds
Ethyl 2-[(Z)-3-chlorobenzylidene]-7-methyl-3-oxo-5-phenyl-2,3-dihydro-5H-1,3-thiazolo[3,2-a]pyrimidine-6-carboxylate
aBhavan's R. A. College of Science, Ahmedabd, Gujarat 380 001, India, and bM. G. Science Institute, Navrangpura, Ahmedabad, Gujarat 380 009, India
*Correspondence e-mail: mmjotani@rediffmail.com
In the title compound, C23H19ClN2O3S, the central pyrimidine ring is significantly puckered, assuming almost a screw boat conformation. In addition to the usual intermolecular C—H⋯O hydrogen bonding, short intramolecular C—H⋯S contacts and π–π stacking interactions [centroid–centroid distance = 3.762 (2) Å] contribute to the crystal packing.
Related literature
For the crystal structures of similar compounds, see: Jotani & Baldaniya (2006, 2007); Sridhar et al., (2006); Fischer et al. (2007). For the biological activities, see: Kappe (2000); Rovnyak et al. (1995); Monks et al. (1991); Winter et al. (1962). For related literature, see: Allen, (2002); Bernstein et al. (1995); Cremer & Pople, (1975).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2004); cell APEX2 and SAINT (Bruker, 2004); data reduction: SAINT and XPREP (Bruker, 2004); program(s) used to solve structure: SIR97 (Altomare et al., 1999); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and PLATON (Spek, 2003); software used to prepare material for publication: SHELXL97 and PLATON.
Supporting information
10.1107/S1600536808007356/rk2081sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536808007356/rk2081Isup2.hkl
A mixture of ethyl 6-methyl-4-phenyl-2-thioxo-1,2,3,4-tetrahydropyrimidine-5-carboxylate (0.01 mol), chloroacetic acid (0.01 mol), fused sodium acetate (6 g) in glacial acetic acid (25 ml), acetic anhydride (10 ml) and 3-chlorobenzaldehyde (0.01 mol) was refluxed for 3 h. The reaction mixture was cooled and poured into cold water. The resulting solid was collected and crystallized from methanol to obtain the final product (82% yield, mp 444 K). The compound was recrystallized by slow evaporation of an ethanol solution, yielding yellow, Platlike single crystals suitable for X–ray diffraction.
H atoms were placed in idealized positions (C—H = 0.93–0.98Å) and constrained to ride on their parent atoms with Uiso(H) = 1.5Ueq(C) for methyl H atoms and 1.2Ueq(C) for other H atoms.
Data collection: APEX2 (Bruker, 2004); cell
APEX2 and SAINT (Bruker, 2004); data reduction: SAINT and XPREP (Bruker, 2004); program(s) used to solve structure: SIR97 (Altomare et al., 1999); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and PLATON (Spek, 2003); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2003).C23H19ClN2O3S | Z = 2 |
Mr = 438.92 | F(000) = 456 |
Triclinic, P1 | Dx = 1.397 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 8.2650 (3) Å | Cell parameters from 3579 reflections |
b = 10.3291 (4) Å | θ = 2.4–25.0° |
c = 13.5655 (5) Å | µ = 0.31 mm−1 |
α = 94.129 (2)° | T = 293 K |
β = 100.837 (2)° | Plate, yellow |
γ = 111.812 (2)° | 0.47 × 0.35 × 0.2 mm |
V = 1043.15 (7) Å3 |
Bruker KappaAPEXII CCD diffractometer | 3677 independent reflections |
Radiation source: Fine–focus sealed tube | 3111 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.024 |
ω and ϕ scans | θmax = 25.0°, θmin = 2.2° |
Absorption correction: multi-scan (SADABS; Bruker, 2004) | h = −9→9 |
Tmin = 0.867, Tmax = 0.936 | k = −12→12 |
18826 measured reflections | l = −16→16 |
Refinement on F2 | Primary atom site location: Direct |
Least-squares matrix: Full | Secondary atom site location: Difmap |
R[F2 > 2σ(F2)] = 0.041 | Hydrogen site location: Geom |
wR(F2) = 0.124 | H-atom parameters constrained |
S = 1.06 | w = 1/[σ2(Fo2) + (0.0643P)2 + 0.3244P] where P = (Fo2 + 2Fc2)/3 |
3677 reflections | (Δ/σ)max = 0.007 |
273 parameters | Δρmax = 0.22 e Å−3 |
0 restraints | Δρmin = −0.25 e Å−3 |
C23H19ClN2O3S | γ = 111.812 (2)° |
Mr = 438.92 | V = 1043.15 (7) Å3 |
Triclinic, P1 | Z = 2 |
a = 8.2650 (3) Å | Mo Kα radiation |
b = 10.3291 (4) Å | µ = 0.31 mm−1 |
c = 13.5655 (5) Å | T = 293 K |
α = 94.129 (2)° | 0.47 × 0.35 × 0.2 mm |
β = 100.837 (2)° |
Bruker KappaAPEXII CCD diffractometer | 3677 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2004) | 3111 reflections with I > 2σ(I) |
Tmin = 0.867, Tmax = 0.936 | Rint = 0.024 |
18826 measured reflections |
R[F2 > 2σ(F2)] = 0.041 | 0 restraints |
wR(F2) = 0.124 | H-atom parameters constrained |
S = 1.06 | Δρmax = 0.22 e Å−3 |
3677 reflections | Δρmin = −0.25 e Å−3 |
273 parameters |
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R–factor wR and goodness of fit S are based on F2, conventional R–factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R–factors(gt) etc. and is not relevant to the choice of reflections for refinement. R–factors based on F2 are statistically about twice as large as those based on F, and R–factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
S1 | 0.30130 (8) | 0.19021 (5) | 0.22916 (4) | 0.06087 (19) | |
Cl1 | 1.00143 (9) | 0.23402 (9) | −0.04622 (5) | 0.0932 (3) | |
N1 | 0.0766 (2) | 0.24166 (16) | 0.32599 (13) | 0.0579 (4) | |
N2 | 0.2084 (2) | 0.40286 (15) | 0.22081 (11) | 0.0471 (4) | |
O1 | 0.3663 (2) | 0.52920 (15) | 0.11435 (11) | 0.0657 (4) | |
O2 | −0.0956 (2) | 0.62159 (17) | 0.26634 (16) | 0.0856 (6) | |
O3 | −0.2281 (3) | 0.4916 (2) | 0.37203 (18) | 0.1084 (7) | |
C1 | 0.1793 (3) | 0.28444 (18) | 0.26598 (14) | 0.0497 (4) | |
C2 | 0.1416 (2) | 0.50926 (18) | 0.25273 (14) | 0.0450 (4) | |
H2 | 0.0929 | 0.5415 | 0.1923 | 0.054* | |
C3 | −0.0077 (2) | 0.44015 (19) | 0.30586 (14) | 0.0503 (4) | |
C4 | −0.0276 (3) | 0.3192 (2) | 0.34291 (15) | 0.0545 (5) | |
C5 | 0.3266 (3) | 0.4282 (2) | 0.15758 (14) | 0.0502 (4) | |
C6 | 0.3964 (3) | 0.3146 (2) | 0.15427 (14) | 0.0525 (5) | |
C7 | −0.1590 (3) | 0.2496 (3) | 0.4043 (2) | 0.0770 (7) | |
H7A | −0.1239 | 0.3051 | 0.4704 | 0.115* | |
H7B | −0.1614 | 0.1571 | 0.4111 | 0.115* | |
H7C | −0.2760 | 0.2420 | 0.3707 | 0.115* | |
C8 | −0.1222 (3) | 0.5170 (2) | 0.32026 (17) | 0.0598 (5) | |
C9 | −0.1899 (4) | 0.7149 (3) | 0.2770 (3) | 0.1048 (11) | |
H9A | −0.2618 | 0.7134 | 0.2112 | 0.126* | |
H9B | −0.2695 | 0.6817 | 0.3222 | 0.126* | |
C10 | −0.0642 (5) | 0.8562 (3) | 0.3169 (3) | 0.1099 (10) | |
H10A | −0.1276 | 0.9165 | 0.3232 | 0.165* | |
H10B | 0.0139 | 0.8890 | 0.2718 | 0.165* | |
H10C | 0.0054 | 0.8577 | 0.3825 | 0.165* | |
C11 | 0.2941 (2) | 0.63460 (17) | 0.32116 (13) | 0.0427 (4) | |
C12 | 0.3852 (3) | 0.6173 (2) | 0.41182 (15) | 0.0600 (5) | |
H12 | 0.3526 | 0.5284 | 0.4313 | 0.072* | |
C13 | 0.5242 (3) | 0.7309 (3) | 0.47383 (17) | 0.0704 (6) | |
H13 | 0.5879 | 0.7179 | 0.5339 | 0.085* | |
C14 | 0.5688 (3) | 0.8626 (2) | 0.44719 (19) | 0.0709 (6) | |
H14 | 0.6613 | 0.9397 | 0.4895 | 0.085* | |
C15 | 0.4773 (4) | 0.8804 (2) | 0.3587 (2) | 0.0813 (7) | |
H15 | 0.5068 | 0.9702 | 0.3408 | 0.098* | |
C16 | 0.3416 (3) | 0.7672 (2) | 0.29520 (17) | 0.0640 (5) | |
H16 | 0.2815 | 0.7806 | 0.2342 | 0.077* | |
C17 | 0.5194 (3) | 0.3207 (2) | 0.10123 (15) | 0.0572 (5) | |
H17 | 0.5494 | 0.3961 | 0.0651 | 0.069* | |
C18 | 0.6139 (3) | 0.2279 (2) | 0.09120 (14) | 0.0573 (5) | |
C19 | 0.5795 (3) | 0.1033 (3) | 0.13257 (17) | 0.0684 (6) | |
H19 | 0.4902 | 0.0744 | 0.1686 | 0.082* | |
C20 | 0.6773 (4) | 0.0225 (3) | 0.12037 (19) | 0.0801 (7) | |
H20 | 0.6543 | −0.0597 | 0.1491 | 0.096* | |
C21 | 0.8079 (4) | 0.0619 (3) | 0.06648 (18) | 0.0763 (7) | |
H21 | 0.8734 | 0.0072 | 0.0584 | 0.092* | |
C22 | 0.8402 (3) | 0.1837 (3) | 0.02458 (16) | 0.0677 (6) | |
C23 | 0.7458 (3) | 0.2672 (2) | 0.03618 (15) | 0.0608 (5) | |
H23 | 0.7704 | 0.3494 | 0.0073 | 0.073* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.0788 (4) | 0.0511 (3) | 0.0654 (3) | 0.0353 (3) | 0.0227 (3) | 0.0169 (2) |
Cl1 | 0.0854 (5) | 0.1389 (7) | 0.0814 (4) | 0.0718 (5) | 0.0248 (3) | 0.0110 (4) |
N1 | 0.0634 (10) | 0.0453 (9) | 0.0625 (10) | 0.0157 (8) | 0.0188 (8) | 0.0127 (8) |
N2 | 0.0545 (9) | 0.0406 (8) | 0.0479 (8) | 0.0202 (7) | 0.0130 (7) | 0.0064 (6) |
O1 | 0.0892 (10) | 0.0631 (9) | 0.0723 (9) | 0.0459 (8) | 0.0416 (8) | 0.0308 (7) |
O2 | 0.0723 (10) | 0.0714 (10) | 0.1448 (17) | 0.0428 (8) | 0.0596 (11) | 0.0413 (11) |
O3 | 0.1136 (15) | 0.1288 (17) | 0.1383 (18) | 0.0757 (14) | 0.0846 (14) | 0.0613 (14) |
C1 | 0.0559 (11) | 0.0402 (9) | 0.0495 (10) | 0.0167 (8) | 0.0089 (8) | 0.0058 (8) |
C2 | 0.0469 (9) | 0.0414 (9) | 0.0494 (10) | 0.0191 (8) | 0.0133 (8) | 0.0083 (7) |
C3 | 0.0432 (9) | 0.0455 (10) | 0.0538 (11) | 0.0090 (8) | 0.0112 (8) | 0.0032 (8) |
C4 | 0.0492 (10) | 0.0471 (10) | 0.0570 (11) | 0.0080 (8) | 0.0134 (8) | 0.0041 (8) |
C5 | 0.0608 (11) | 0.0499 (10) | 0.0464 (10) | 0.0273 (9) | 0.0151 (8) | 0.0099 (8) |
C6 | 0.0641 (11) | 0.0518 (10) | 0.0480 (10) | 0.0311 (9) | 0.0104 (9) | 0.0082 (8) |
C7 | 0.0740 (15) | 0.0635 (14) | 0.0905 (17) | 0.0127 (11) | 0.0392 (13) | 0.0200 (12) |
C8 | 0.0462 (10) | 0.0597 (12) | 0.0715 (13) | 0.0167 (9) | 0.0195 (9) | 0.0058 (10) |
C9 | 0.0828 (18) | 0.088 (2) | 0.180 (3) | 0.0567 (16) | 0.061 (2) | 0.038 (2) |
C10 | 0.112 (2) | 0.086 (2) | 0.150 (3) | 0.0586 (19) | 0.037 (2) | 0.0105 (19) |
C11 | 0.0403 (8) | 0.0421 (9) | 0.0494 (10) | 0.0171 (7) | 0.0170 (7) | 0.0064 (7) |
C12 | 0.0666 (12) | 0.0487 (11) | 0.0581 (12) | 0.0187 (9) | 0.0066 (10) | 0.0087 (9) |
C13 | 0.0690 (14) | 0.0758 (15) | 0.0564 (12) | 0.0245 (12) | 0.0022 (10) | 0.0014 (11) |
C14 | 0.0588 (12) | 0.0558 (13) | 0.0766 (15) | 0.0026 (10) | 0.0148 (11) | −0.0080 (11) |
C15 | 0.0806 (16) | 0.0443 (12) | 0.0954 (18) | 0.0020 (11) | 0.0115 (14) | 0.0139 (12) |
C16 | 0.0650 (13) | 0.0484 (11) | 0.0705 (13) | 0.0143 (10) | 0.0104 (10) | 0.0174 (10) |
C17 | 0.0714 (13) | 0.0622 (12) | 0.0508 (11) | 0.0388 (10) | 0.0160 (9) | 0.0127 (9) |
C18 | 0.0697 (12) | 0.0682 (13) | 0.0441 (10) | 0.0422 (11) | 0.0064 (9) | 0.0055 (9) |
C19 | 0.0897 (16) | 0.0763 (14) | 0.0588 (12) | 0.0526 (13) | 0.0189 (11) | 0.0164 (11) |
C20 | 0.109 (2) | 0.0881 (17) | 0.0676 (14) | 0.0677 (16) | 0.0141 (14) | 0.0181 (12) |
C21 | 0.0910 (17) | 0.0959 (18) | 0.0632 (13) | 0.0684 (15) | 0.0039 (12) | 0.0043 (13) |
C22 | 0.0688 (13) | 0.0962 (17) | 0.0486 (11) | 0.0526 (13) | 0.0013 (9) | −0.0021 (11) |
C23 | 0.0686 (13) | 0.0753 (14) | 0.0477 (11) | 0.0430 (11) | 0.0056 (9) | 0.0059 (9) |
S1—C6 | 1.743 (2) | C10—H10A | 0.9600 |
S1—C1 | 1.750 (2) | C10—H10B | 0.9600 |
Cl1—C22 | 1.734 (3) | C10—H10C | 0.9600 |
N1—C1 | 1.269 (2) | C11—C16 | 1.370 (3) |
N1—C4 | 1.413 (3) | C11—C12 | 1.376 (3) |
N2—C1 | 1.369 (2) | C12—C13 | 1.378 (3) |
N2—C5 | 1.384 (2) | C12—H12 | 0.9300 |
N2—C2 | 1.474 (2) | C13—C14 | 1.366 (3) |
O1—C5 | 1.202 (2) | C13—H13 | 0.9300 |
O2—C8 | 1.322 (3) | C14—C15 | 1.357 (4) |
O2—C9 | 1.461 (3) | C14—H14 | 0.9300 |
O3—C8 | 1.190 (3) | C15—C16 | 1.372 (3) |
C2—C3 | 1.518 (3) | C15—H15 | 0.9300 |
C2—C11 | 1.517 (2) | C16—H16 | 0.9300 |
C2—H2 | 0.9800 | C17—C18 | 1.458 (3) |
C3—C4 | 1.345 (3) | C17—H17 | 0.9300 |
C3—C8 | 1.473 (3) | C18—C23 | 1.390 (3) |
C4—C7 | 1.495 (3) | C18—C19 | 1.395 (3) |
C5—C6 | 1.489 (3) | C19—C20 | 1.382 (3) |
C6—C17 | 1.338 (3) | C19—H19 | 0.9300 |
C7—H7A | 0.9600 | C20—C21 | 1.370 (4) |
C7—H7B | 0.9600 | C20—H20 | 0.9300 |
C7—H7C | 0.9600 | C21—C22 | 1.374 (4) |
C9—C10 | 1.432 (4) | C21—H21 | 0.9300 |
C9—H9A | 0.9700 | C22—C23 | 1.380 (3) |
C9—H9B | 0.9700 | C23—H23 | 0.9300 |
C6—S1—C1 | 91.75 (9) | H10A—C10—H10B | 109.5 |
C1—N1—C4 | 116.63 (16) | C9—C10—H10C | 109.5 |
C1—N2—C5 | 116.72 (15) | H10A—C10—H10C | 109.5 |
C1—N2—C2 | 120.56 (15) | H10B—C10—H10C | 109.5 |
C5—N2—C2 | 121.87 (14) | C16—C11—C12 | 118.73 (17) |
C8—O2—C9 | 118.6 (2) | C16—C11—C2 | 120.90 (17) |
N1—C1—N2 | 126.94 (18) | C12—C11—C2 | 120.36 (16) |
N1—C1—S1 | 121.68 (15) | C11—C12—C13 | 120.4 (2) |
N2—C1—S1 | 111.37 (14) | C11—C12—H12 | 119.8 |
N2—C2—C3 | 108.40 (14) | C13—C12—H12 | 119.8 |
N2—C2—C11 | 109.88 (14) | C14—C13—C12 | 120.0 (2) |
C3—C2—C11 | 111.85 (14) | C14—C13—H13 | 120.0 |
N2—C2—H2 | 108.9 | C12—C13—H13 | 120.0 |
C3—C2—H2 | 108.9 | C15—C14—C13 | 119.6 (2) |
C11—C2—H2 | 108.9 | C15—C14—H14 | 120.2 |
C4—C3—C8 | 121.80 (18) | C13—C14—H14 | 120.2 |
C4—C3—C2 | 121.61 (17) | C14—C15—C16 | 120.7 (2) |
C8—C3—C2 | 116.49 (17) | C14—C15—H15 | 119.7 |
C3—C4—N1 | 122.24 (17) | C16—C15—H15 | 119.7 |
C3—C4—C7 | 125.8 (2) | C11—C16—C15 | 120.4 (2) |
N1—C4—C7 | 111.97 (18) | C11—C16—H16 | 119.8 |
O1—C5—N2 | 123.64 (17) | C15—C16—H16 | 119.8 |
O1—C5—C6 | 126.67 (18) | C6—C17—C18 | 130.16 (19) |
N2—C5—C6 | 109.69 (16) | C6—C17—H17 | 114.9 |
C17—C6—C5 | 120.14 (18) | C18—C17—H17 | 114.9 |
C17—C6—S1 | 129.37 (15) | C23—C18—C19 | 118.59 (19) |
C5—C6—S1 | 110.45 (14) | C23—C18—C17 | 117.16 (19) |
C4—C7—H7A | 109.5 | C19—C18—C17 | 124.2 (2) |
C4—C7—H7B | 109.5 | C20—C19—C18 | 120.3 (2) |
H7A—C7—H7B | 109.5 | C20—C19—H19 | 119.8 |
C4—C7—H7C | 109.5 | C18—C19—H19 | 119.8 |
H7A—C7—H7C | 109.5 | C21—C20—C19 | 120.9 (2) |
H7B—C7—H7C | 109.5 | C21—C20—H20 | 119.6 |
O3—C8—O2 | 122.0 (2) | C19—C20—H20 | 119.6 |
O3—C8—C3 | 126.6 (2) | C20—C21—C22 | 118.8 (2) |
O2—C8—C3 | 111.39 (17) | C20—C21—H21 | 120.6 |
C10—C9—O2 | 110.2 (2) | C22—C21—H21 | 120.6 |
C10—C9—H9A | 109.6 | C21—C22—C23 | 121.7 (2) |
O2—C9—H9A | 109.6 | C21—C22—Cl1 | 119.69 (17) |
C10—C9—H9B | 109.6 | C23—C22—Cl1 | 118.6 (2) |
O2—C9—H9B | 109.6 | C22—C23—C18 | 119.7 (2) |
H9A—C9—H9B | 108.1 | C22—C23—H23 | 120.2 |
C9—C10—H10A | 109.5 | C18—C23—H23 | 120.2 |
C9—C10—H10B | 109.5 | ||
C4—N1—C1—N2 | 4.5 (3) | C9—O2—C8—C3 | −176.0 (2) |
C4—N1—C1—S1 | −174.31 (14) | C4—C3—C8—O3 | 7.8 (4) |
C5—N2—C1—N1 | −179.82 (18) | C2—C3—C8—O3 | −168.5 (2) |
C2—N2—C1—N1 | 10.6 (3) | C4—C3—C8—O2 | −171.50 (19) |
C5—N2—C1—S1 | −0.9 (2) | C2—C3—C8—O2 | 12.2 (3) |
C2—N2—C1—S1 | −170.54 (12) | C8—O2—C9—C10 | 117.2 (3) |
C6—S1—C1—N1 | −179.77 (17) | N2—C2—C11—C16 | 120.27 (19) |
C6—S1—C1—N2 | 1.29 (14) | C3—C2—C11—C16 | −119.3 (2) |
C1—N2—C2—C3 | −20.5 (2) | N2—C2—C11—C12 | −61.0 (2) |
C5—N2—C2—C3 | 170.42 (15) | C3—C2—C11—C12 | 59.4 (2) |
C1—N2—C2—C11 | 101.98 (18) | C16—C11—C12—C13 | −1.6 (3) |
C5—N2—C2—C11 | −67.1 (2) | C2—C11—C12—C13 | 179.69 (19) |
N2—C2—C3—C4 | 18.8 (2) | C11—C12—C13—C14 | 2.2 (3) |
C11—C2—C3—C4 | −102.5 (2) | C12—C13—C14—C15 | −1.1 (4) |
N2—C2—C3—C8 | −164.91 (16) | C13—C14—C15—C16 | −0.6 (4) |
C11—C2—C3—C8 | 73.8 (2) | C12—C11—C16—C15 | −0.1 (3) |
C8—C3—C4—N1 | 177.36 (17) | C2—C11—C16—C15 | 178.6 (2) |
C2—C3—C4—N1 | −6.5 (3) | C14—C15—C16—C11 | 1.2 (4) |
C8—C3—C4—C7 | −1.9 (3) | C5—C6—C17—C18 | 176.23 (19) |
C2—C3—C4—C7 | 174.21 (19) | S1—C6—C17—C18 | −1.3 (4) |
C1—N1—C4—C3 | −6.4 (3) | C6—C17—C18—C23 | −175.3 (2) |
C1—N1—C4—C7 | 173.01 (18) | C6—C17—C18—C19 | 5.1 (4) |
C1—N2—C5—O1 | −178.87 (18) | C23—C18—C19—C20 | 1.2 (3) |
C2—N2—C5—O1 | −9.4 (3) | C17—C18—C19—C20 | −179.2 (2) |
C1—N2—C5—C6 | 0.0 (2) | C18—C19—C20—C21 | −0.9 (4) |
C2—N2—C5—C6 | 169.41 (15) | C19—C20—C21—C22 | 0.0 (4) |
O1—C5—C6—C17 | 1.8 (3) | C20—C21—C22—C23 | 0.5 (3) |
N2—C5—C6—C17 | −176.99 (17) | C20—C21—C22—Cl1 | −178.66 (18) |
O1—C5—C6—S1 | 179.79 (17) | C21—C22—C23—C18 | −0.2 (3) |
N2—C5—C6—S1 | 1.0 (2) | Cl1—C22—C23—C18 | 178.96 (15) |
C1—S1—C6—C17 | 176.5 (2) | C19—C18—C23—C22 | −0.6 (3) |
C1—S1—C6—C5 | −1.29 (14) | C17—C18—C23—C22 | 179.71 (18) |
C9—O2—C8—O3 | 4.7 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
C23—H23···O1i | 0.93 | 2.49 | 3.287 (3) | 143 |
C19—H19···S1 | 0.93 | 2.50 | 3.210 (3) | 133 |
Symmetry code: (i) −x+1, −y+1, −z. |
Experimental details
Crystal data | |
Chemical formula | C23H19ClN2O3S |
Mr | 438.92 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 293 |
a, b, c (Å) | 8.2650 (3), 10.3291 (4), 13.5655 (5) |
α, β, γ (°) | 94.129 (2), 100.837 (2), 111.812 (2) |
V (Å3) | 1043.15 (7) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.31 |
Crystal size (mm) | 0.47 × 0.35 × 0.2 |
Data collection | |
Diffractometer | Bruker KappaAPEXII CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2004) |
Tmin, Tmax | 0.867, 0.936 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 18826, 3677, 3111 |
Rint | 0.024 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.041, 0.124, 1.06 |
No. of reflections | 3677 |
No. of parameters | 273 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.22, −0.25 |
Computer programs: APEX2 (Bruker, 2004), APEX2 and SAINT (Bruker, 2004), SAINT and XPREP (Bruker, 2004), SIR97 (Altomare et al., 1999), ORTEP-3 (Farrugia, 1997) and PLATON (Spek, 2003), SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2003).
D—H···A | D—H | H···A | D···A | D—H···A |
C23—H23···O1i | 0.93 | 2.49 | 3.287 (3) | 143 |
C19—H19···S1 | 0.93 | 2.50 | 3.210 (3) | 133 |
Symmetry code: (i) −x+1, −y+1, −z. |
Acknowledgements
The authors thank the Department of Science and Technology (DST) and SAIF, IIT Madras, Chennai, India, for the intensity data collection.
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The remarkable biological activties of fused pyrimidines such as antiviral, antitumor, anticancer, antiinflammatory, antihypertensive etc. (Kappe, 2000; Rovnyak et al., 1995) bring this class of heterocyclic compounds of significant pharmacological interest. The title thiazolo [3,2-a] pyrimidine compound, (I), possesses anticancer and antiinflammatory activity. The anticancer drug screen is carried out using a diverse panel of cultured human tumor cell lines (Monks et al., 1991). The anti-inflammatory activity is determined by inhibition in the Carageena-induced rat paw edema method (Winter et al., 1962). In view of these properties and to study the effect of chlorine substituent at different positions of benzene ring on crystal packing, the crystal structure of I has been determined.
On Fig. 1 is shown the molecular structure of I with the atom numbering scheme. The pyrimidine ring adopts almost a screw boat conformation as indicated by the ring puckering parameters [q2 = 0.175 (2)Å, q3 = 0.077 (2)Å, θ = 66.2 (6)° and ϕ = 173.1 (7)°; Cremer & Pople, 1975]. The idealized values for the screw boat conformation are: θ = 67.5° and ϕ = (60k + 30)°, where k is an integer. The asymmetry parameters also support this information. All bond lengths and angles in the pyrimidine ring have normal values. The fused thiazole ring has usual geometry as observed in other fused thiazolopyrimidine compounds (Jotani & Baldaniya, 2006, 2007; Sridhar et al., 2006). The thiazole ring makes dihedral angles of 89.06 (11) and 6.56 (10)° with the benzene rings C11–C16 and C18–C23, respectively. The short C9–C10 bond distance is a consequence of slight liberation of the ethoxy group. The ethoxy group is in all–trans conformation as observed from the torsional angles C3–C8–O2–C9 and C8–O2–C9–C10 of -176.0 (2) and 117.2 (3)° respectively.
The crystal structure of I is also have an intermolecular C—H···O interaction (Fig. 2 and Table) similar to earlier reported ortho- and para-substituted compounds (Jotani & Baldaniya, 2006, 2007). In the structure a carbon C23 atom of C18–C23 benzene ring participates in the C—H···O interaction that forms R22(14) graph–set motif (Bernstein et al., 1995), where as in ortho- and para-substituted chlorine derivatives, the interaction is due to C14 atom of C11–C16 benzene ring. This may be the different symmetry of the crystal system as the title compound I crystallizes in triclinic system where as the previous two structures were crystallized in monoclinic space group. A PLATON analysis (Spek, 2003) of I indicated that a weak intramolecular C—H···S hydrogen bond (Fig. 1 and Table) forms a pseudo-six-membered ring of S(6) graph-set motif (Bernstein et al., 1995) also help to consolidate the crystal packing. There is a comparatively weak π–π stacking interaction between the C18–C23 benzene rings with symmetry codes: (x, y, z) and (1-x, 1-y, -z); their centroids are separated by 3.762 (2)Å and the rings have a slippage of 1.523Å (Fig. 3).