organic compounds
N,N′,N′′-Triphenylguanidinium 5-nitro-2,4-dioxo-1,2,3,4-tetrahydropyrimidin-1-ide
aCEMDRX, Physics Department, University of Coimbra, P-3004-516 Coimbra, Portugal
*Correspondence e-mail: psidonio@pollux.fis.uc.pt
In the title compound, C19H18N3+.C4H2N3O4−, the dihedral angles between the phenyl rings and the plane defined by the central guanidinium fragment are in the range 41.3 (1)–66.6 (1)°. The pyrimidine ring of the anion is distorted towards a boat conformation and the nitro group is rotated 11.4 (2)° out of the uracil plane. Hydrogen bonds assemble the ions in infinite helical chains along the b axis.
Related literature
For the non-linear optical properties of 5-nitrouracil, see: Puccetti et al. (1993), Youping et al. (1992). For reports of other triphenylguanidine salts, see: Pereira Silva et al. (2006, 2007a,b), Pereira Silva, Cardoso et al. (2007). For related literature, see: Allen et al. (1987); Kemme et al. (1988); Klement et al. (1995); Largent et al. (1987); Pettier & Byrn (1982); Rao et al. (1995); Weber et al. (1986); Zyss et al. (1993).
Experimental
Crystal data
|
Refinement
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Data collection: APEX2 (Bruker, 2005); cell SAINT (Bruker, 2005); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2003); software used to prepare material for publication: SHELXL97.
Supporting information
10.1107/S1600536808014244/bt2707sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536808014244/bt2707Isup2.hkl
The title compound was prepared by adding 5-nitrouracil (Aldrich, 98%, 1 mmol) to triphenylguanidine (TCI 97%, 1 mmol) in a ethanol solution (80 ml). The solution was slowly warmed and then left to evaporate under ambient conditions. After a few days, small yellow transparent single crystals were deposited.
All H atoms were located in a difference Fourier synthesis, placed at calculated positions and refined as riding on their parent atoms, using SHELXL97 (Sheldrick, 2008) defaults [C—H = 0.93 Å, N—H = 0.86 Å and Uiso(H) = 1.2Ueq(C,N)].
Data collection: SMART (Bruker, 2005); cell
SAINT (Bruker, 2005); data reduction: SAINT (Bruker, 2005); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2003); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).C19H18N3+·C4H2N3O4− | F(000) = 928 |
Mr = 444.45 | Dx = 1.348 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 5110 reflections |
a = 10.7495 (4) Å | θ = 2.3–21.6° |
b = 15.6892 (7) Å | µ = 0.10 mm−1 |
c = 15.5624 (7) Å | T = 293 K |
β = 123.456 (3)° | Block, yellow |
V = 2189.74 (18) Å3 | 0.34 × 0.20 × 0.12 mm |
Z = 4 |
Bruker APEX2 CCD area-detector diffractometer | 5534 independent reflections |
Radiation source: fine-focus sealed tube | 2650 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.086 |
ϕ and ω scans | θmax = 28.6°, θmin = 2.0° |
Absorption correction: multi-scan (SADABS; Sheldrick, 2003) | h = −14→14 |
Tmin = 0.822, Tmax = 0.989 | k = −20→21 |
47807 measured reflections | l = −20→20 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.050 | H-atom parameters constrained |
wR(F2) = 0.154 | w = 1/[σ2(Fo2) + (0.0713P)2 + 0.1061P] where P = (Fo2 + 2Fc2)/3 |
S = 0.99 | (Δ/σ)max < 0.001 |
5534 reflections | Δρmax = 0.22 e Å−3 |
299 parameters | Δρmin = −0.17 e Å−3 |
0 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0068 (11) |
C19H18N3+·C4H2N3O4− | V = 2189.74 (18) Å3 |
Mr = 444.45 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 10.7495 (4) Å | µ = 0.10 mm−1 |
b = 15.6892 (7) Å | T = 293 K |
c = 15.5624 (7) Å | 0.34 × 0.20 × 0.12 mm |
β = 123.456 (3)° |
Bruker APEX2 CCD area-detector diffractometer | 5534 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2003) | 2650 reflections with I > 2σ(I) |
Tmin = 0.822, Tmax = 0.989 | Rint = 0.086 |
47807 measured reflections |
R[F2 > 2σ(F2)] = 0.050 | 0 restraints |
wR(F2) = 0.154 | H-atom parameters constrained |
S = 0.99 | Δρmax = 0.22 e Å−3 |
5534 reflections | Δρmin = −0.17 e Å−3 |
299 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O2 | 0.82985 (16) | −0.17695 (11) | 0.60642 (13) | 0.0729 (5) | |
O4 | 0.61600 (16) | 0.07278 (11) | 0.59408 (15) | 0.0968 (6) | |
O7 | 0.7653 (2) | 0.21285 (11) | 0.59093 (15) | 0.0949 (6) | |
O8 | 0.9257 (2) | 0.19450 (12) | 0.55194 (16) | 0.0940 (6) | |
N1 | 0.93683 (17) | −0.06007 (12) | 0.58600 (13) | 0.0581 (5) | |
N3 | 0.72353 (18) | −0.04940 (13) | 0.59167 (16) | 0.0759 (6) | |
H3 | 0.6532 | −0.0761 | 0.5911 | 0.091* | |
N5 | 0.8406 (2) | 0.16564 (13) | 0.57455 (13) | 0.0658 (5) | |
C2 | 0.8316 (2) | −0.09943 (17) | 0.59504 (16) | 0.0596 (6) | |
C4 | 0.7147 (2) | 0.03782 (16) | 0.58914 (17) | 0.0668 (6) | |
C5 | 0.8282 (2) | 0.07584 (14) | 0.57999 (14) | 0.0555 (5) | |
C6 | 0.9311 (2) | 0.02398 (15) | 0.57896 (15) | 0.0585 (6) | |
H6 | 1.0030 | 0.0506 | 0.5727 | 0.070* | |
N6 | 0.93433 (16) | 0.28871 (10) | 0.33661 (12) | 0.0538 (4) | |
H6A | 1.0086 | 0.2545 | 0.3590 | 0.065* | |
N7 | 0.79767 (16) | 0.16933 (10) | 0.31325 (12) | 0.0503 (4) | |
H7 | 0.8742 | 0.1468 | 0.3667 | 0.060* | |
N8 | 0.67626 (16) | 0.29829 (10) | 0.24472 (12) | 0.0491 (4) | |
H8 | 0.6759 | 0.3411 | 0.2101 | 0.059* | |
C7 | 0.80155 (19) | 0.25245 (12) | 0.29824 (14) | 0.0464 (5) | |
C8 | 0.9677 (2) | 0.37724 (13) | 0.34492 (14) | 0.0539 (5) | |
C9 | 0.8938 (3) | 0.43773 (15) | 0.3642 (2) | 0.0768 (7) | |
H9 | 0.8184 | 0.4218 | 0.3732 | 0.092* | |
C10 | 0.9323 (4) | 0.52263 (18) | 0.3700 (2) | 0.1001 (10) | |
H10 | 0.8806 | 0.5639 | 0.3811 | 0.120* | |
C11 | 1.0463 (4) | 0.5467 (2) | 0.3594 (2) | 0.1051 (12) | |
H11 | 1.0718 | 0.6038 | 0.3632 | 0.126* | |
C12 | 1.1207 (3) | 0.4857 (2) | 0.3434 (2) | 0.0959 (10) | |
H12 | 1.1990 | 0.5015 | 0.3374 | 0.115* | |
C13 | 1.0833 (2) | 0.40133 (17) | 0.33588 (16) | 0.0702 (7) | |
H13 | 1.1356 | 0.3605 | 0.3247 | 0.084* | |
C14 | 0.67503 (19) | 0.11513 (11) | 0.24655 (15) | 0.0468 (5) | |
C15 | 0.6368 (3) | 0.05200 (14) | 0.28837 (19) | 0.0765 (7) | |
H15 | 0.6896 | 0.0452 | 0.3594 | 0.092* | |
C16 | 0.5197 (4) | −0.00143 (18) | 0.2246 (2) | 0.1072 (11) | |
H16 | 0.4934 | −0.0446 | 0.2526 | 0.129* | |
C17 | 0.4422 (3) | 0.00873 (17) | 0.1204 (2) | 0.0877 (8) | |
H17 | 0.3628 | −0.0273 | 0.0776 | 0.105* | |
C18 | 0.4805 (2) | 0.07121 (15) | 0.07889 (18) | 0.0666 (6) | |
H18 | 0.4269 | 0.0781 | 0.0078 | 0.080* | |
C19 | 0.5977 (2) | 0.12417 (13) | 0.14139 (15) | 0.0535 (5) | |
H19 | 0.6250 | 0.1662 | 0.1127 | 0.064* | |
C20 | 0.54307 (19) | 0.28099 (11) | 0.24114 (14) | 0.0459 (5) | |
C21 | 0.5506 (2) | 0.26333 (14) | 0.33038 (16) | 0.0584 (5) | |
H21 | 0.6423 | 0.2616 | 0.3931 | 0.070* | |
C22 | 0.4205 (3) | 0.24817 (15) | 0.3260 (2) | 0.0725 (6) | |
H22 | 0.4244 | 0.2356 | 0.3858 | 0.087* | |
C23 | 0.2860 (3) | 0.25168 (17) | 0.2335 (2) | 0.0795 (7) | |
H23 | 0.1988 | 0.2411 | 0.2308 | 0.095* | |
C24 | 0.2785 (2) | 0.27057 (17) | 0.1450 (2) | 0.0760 (7) | |
H24 | 0.1864 | 0.2735 | 0.0826 | 0.091* | |
C25 | 0.4079 (2) | 0.28527 (14) | 0.14842 (16) | 0.0605 (6) | |
H25 | 0.4035 | 0.2980 | 0.0884 | 0.073* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O2 | 0.0549 (9) | 0.0732 (11) | 0.0938 (12) | 0.0013 (8) | 0.0430 (8) | −0.0117 (9) |
O4 | 0.0486 (9) | 0.0987 (13) | 0.1444 (16) | −0.0064 (8) | 0.0541 (10) | −0.0593 (12) |
O7 | 0.1289 (16) | 0.0814 (12) | 0.1126 (14) | 0.0391 (11) | 0.0908 (13) | 0.0146 (10) |
O8 | 0.0851 (12) | 0.0926 (14) | 0.1211 (15) | 0.0113 (10) | 0.0675 (12) | 0.0081 (11) |
N1 | 0.0447 (9) | 0.0748 (13) | 0.0567 (10) | 0.0156 (8) | 0.0290 (8) | 0.0017 (9) |
N3 | 0.0438 (9) | 0.0791 (14) | 0.1104 (16) | −0.0068 (9) | 0.0462 (10) | −0.0360 (11) |
N5 | 0.0622 (11) | 0.0797 (14) | 0.0520 (11) | 0.0232 (10) | 0.0293 (9) | 0.0050 (9) |
C2 | 0.0385 (10) | 0.0779 (16) | 0.0564 (13) | 0.0058 (10) | 0.0224 (9) | −0.0146 (12) |
C4 | 0.0348 (10) | 0.0810 (17) | 0.0710 (14) | 0.0039 (10) | 0.0206 (10) | −0.0295 (12) |
C5 | 0.0441 (10) | 0.0706 (15) | 0.0443 (11) | 0.0153 (10) | 0.0196 (9) | −0.0054 (10) |
C6 | 0.0468 (11) | 0.0790 (16) | 0.0500 (12) | 0.0149 (10) | 0.0270 (9) | 0.0049 (11) |
N6 | 0.0370 (8) | 0.0558 (10) | 0.0650 (10) | −0.0021 (7) | 0.0260 (8) | −0.0019 (8) |
N7 | 0.0370 (8) | 0.0462 (9) | 0.0559 (10) | 0.0036 (7) | 0.0182 (7) | 0.0055 (7) |
N8 | 0.0393 (8) | 0.0468 (9) | 0.0625 (10) | 0.0031 (7) | 0.0289 (7) | 0.0130 (8) |
C7 | 0.0377 (10) | 0.0504 (12) | 0.0524 (11) | −0.0005 (8) | 0.0257 (8) | 0.0006 (9) |
C8 | 0.0458 (10) | 0.0578 (13) | 0.0475 (11) | −0.0093 (9) | 0.0191 (9) | −0.0011 (9) |
C9 | 0.0752 (15) | 0.0629 (16) | 0.0913 (18) | −0.0108 (12) | 0.0452 (14) | −0.0139 (13) |
C10 | 0.104 (2) | 0.0608 (17) | 0.101 (2) | −0.0072 (16) | 0.0347 (18) | −0.0097 (15) |
C11 | 0.105 (2) | 0.070 (2) | 0.0763 (19) | −0.0331 (18) | 0.0098 (17) | 0.0112 (15) |
C12 | 0.0807 (19) | 0.105 (2) | 0.0703 (18) | −0.0443 (18) | 0.0218 (15) | 0.0132 (16) |
C13 | 0.0525 (12) | 0.0899 (18) | 0.0590 (13) | −0.0203 (12) | 0.0249 (10) | 0.0025 (12) |
C14 | 0.0392 (9) | 0.0431 (11) | 0.0566 (12) | 0.0040 (8) | 0.0256 (9) | 0.0000 (9) |
C15 | 0.0956 (18) | 0.0578 (14) | 0.0655 (15) | −0.0198 (13) | 0.0378 (13) | 0.0029 (11) |
C16 | 0.137 (3) | 0.081 (2) | 0.092 (2) | −0.0555 (19) | 0.057 (2) | −0.0047 (16) |
C17 | 0.0882 (18) | 0.0767 (18) | 0.088 (2) | −0.0355 (14) | 0.0420 (16) | −0.0208 (14) |
C18 | 0.0613 (13) | 0.0670 (15) | 0.0630 (14) | −0.0035 (11) | 0.0288 (11) | −0.0089 (11) |
C19 | 0.0505 (11) | 0.0527 (12) | 0.0600 (13) | 0.0007 (9) | 0.0321 (10) | 0.0009 (10) |
C20 | 0.0417 (10) | 0.0421 (11) | 0.0577 (12) | 0.0052 (8) | 0.0299 (9) | 0.0059 (9) |
C21 | 0.0543 (12) | 0.0613 (13) | 0.0646 (13) | 0.0073 (10) | 0.0359 (11) | 0.0101 (10) |
C22 | 0.0781 (16) | 0.0782 (16) | 0.0897 (17) | 0.0069 (13) | 0.0643 (15) | 0.0110 (13) |
C23 | 0.0579 (14) | 0.0906 (18) | 0.112 (2) | −0.0022 (12) | 0.0608 (16) | −0.0005 (15) |
C24 | 0.0425 (11) | 0.1013 (19) | 0.0818 (17) | 0.0049 (11) | 0.0329 (11) | −0.0025 (14) |
C25 | 0.0440 (11) | 0.0753 (15) | 0.0620 (13) | 0.0082 (10) | 0.0291 (10) | 0.0074 (11) |
O2—C2 | 1.231 (3) | C11—C12 | 1.356 (4) |
O4—C4 | 1.234 (2) | C11—H11 | 0.9300 |
O7—N5 | 1.224 (2) | C12—C13 | 1.369 (4) |
O8—N5 | 1.233 (2) | C12—H12 | 0.9300 |
N1—C6 | 1.322 (3) | C13—H13 | 0.9300 |
N1—C2 | 1.362 (3) | C14—C15 | 1.367 (3) |
N3—C4 | 1.371 (3) | C14—C19 | 1.375 (3) |
N3—C2 | 1.379 (3) | C15—C16 | 1.376 (3) |
N3—H3 | 0.8600 | C15—H15 | 0.9300 |
N5—C5 | 1.422 (3) | C16—C17 | 1.364 (4) |
C4—C5 | 1.434 (3) | C16—H16 | 0.9300 |
C5—C6 | 1.380 (3) | C17—C18 | 1.356 (3) |
C6—H6 | 0.9300 | C17—H17 | 0.9300 |
N6—C7 | 1.333 (2) | C18—C19 | 1.368 (3) |
N6—C8 | 1.422 (2) | C18—H18 | 0.9300 |
N6—H6A | 0.8600 | C19—H19 | 0.9300 |
N7—C7 | 1.330 (2) | C20—C25 | 1.373 (3) |
N7—C14 | 1.425 (2) | C20—C21 | 1.374 (3) |
N7—H7 | 0.8600 | C21—C22 | 1.383 (3) |
N8—C7 | 1.337 (2) | C21—H21 | 0.9300 |
N8—C20 | 1.428 (2) | C22—C23 | 1.368 (3) |
N8—H8 | 0.8600 | C22—H22 | 0.9300 |
C8—C9 | 1.373 (3) | C23—C24 | 1.367 (3) |
C8—C13 | 1.378 (3) | C23—H23 | 0.9300 |
C9—C10 | 1.383 (4) | C24—C25 | 1.382 (3) |
C9—H9 | 0.9300 | C24—H24 | 0.9300 |
C10—C11 | 1.375 (5) | C25—H25 | 0.9300 |
C10—H10 | 0.9300 | ||
C6—N1—C2 | 117.20 (18) | C11—C12—C13 | 121.5 (3) |
C4—N3—C2 | 127.8 (2) | C11—C12—H12 | 119.2 |
C4—N3—H3 | 116.1 | C13—C12—H12 | 119.2 |
C2—N3—H3 | 116.1 | C12—C13—C8 | 119.7 (3) |
O7—N5—O8 | 121.2 (2) | C12—C13—H13 | 120.2 |
O7—N5—C5 | 119.5 (2) | C8—C13—H13 | 120.2 |
O8—N5—C5 | 119.33 (18) | C15—C14—C19 | 119.88 (18) |
O2—C2—N1 | 122.85 (19) | C15—C14—N7 | 119.08 (18) |
O2—C2—N3 | 119.2 (2) | C19—C14—N7 | 121.02 (17) |
N1—C2—N3 | 117.9 (2) | C14—C15—C16 | 119.6 (2) |
O4—C4—N3 | 119.4 (2) | C14—C15—H15 | 120.2 |
O4—C4—C5 | 129.0 (2) | C16—C15—H15 | 120.2 |
N3—C4—C5 | 111.65 (18) | C17—C16—C15 | 120.2 (2) |
C6—C5—N5 | 118.7 (2) | C17—C16—H16 | 119.9 |
C6—C5—C4 | 119.1 (2) | C15—C16—H16 | 119.9 |
N5—C5—C4 | 122.10 (18) | C18—C17—C16 | 120.2 (2) |
N1—C6—C5 | 126.0 (2) | C18—C17—H17 | 119.9 |
N1—C6—H6 | 117.0 | C16—C17—H17 | 119.9 |
C5—C6—H6 | 117.0 | C17—C18—C19 | 120.2 (2) |
C7—N6—C8 | 127.70 (17) | C17—C18—H18 | 119.9 |
C7—N6—H6A | 116.1 | C19—C18—H18 | 119.9 |
C8—N6—H6A | 116.1 | C18—C19—C14 | 120.0 (2) |
C7—N7—C14 | 124.30 (15) | C18—C19—H19 | 120.0 |
C7—N7—H7 | 117.8 | C14—C19—H19 | 120.0 |
C14—N7—H7 | 117.8 | C25—C20—C21 | 120.68 (18) |
C7—N8—C20 | 124.48 (15) | C25—C20—N8 | 119.28 (18) |
C7—N8—H8 | 117.8 | C21—C20—N8 | 119.99 (17) |
C20—N8—H8 | 117.8 | C20—C21—C22 | 119.4 (2) |
N7—C7—N6 | 118.00 (16) | C20—C21—H21 | 120.3 |
N7—C7—N8 | 121.24 (16) | C22—C21—H21 | 120.3 |
N6—C7—N8 | 120.75 (17) | C23—C22—C21 | 119.9 (2) |
C9—C8—C13 | 119.7 (2) | C23—C22—H22 | 120.1 |
C9—C8—N6 | 123.18 (19) | C21—C22—H22 | 120.1 |
C13—C8—N6 | 117.1 (2) | C24—C23—C22 | 120.7 (2) |
C8—C9—C10 | 119.4 (3) | C24—C23—H23 | 119.7 |
C8—C9—H9 | 120.3 | C22—C23—H23 | 119.7 |
C10—C9—H9 | 120.3 | C23—C24—C25 | 119.9 (2) |
C11—C10—C9 | 120.7 (3) | C23—C24—H24 | 120.0 |
C11—C10—H10 | 119.6 | C25—C24—H24 | 120.0 |
C9—C10—H10 | 119.6 | C20—C25—C24 | 119.5 (2) |
C12—C11—C10 | 118.9 (3) | C20—C25—H25 | 120.3 |
C12—C11—H11 | 120.5 | C24—C25—H25 | 120.3 |
C10—C11—H11 | 120.5 | ||
C6—N1—C2—O2 | −176.90 (19) | C8—C9—C10—C11 | −1.8 (4) |
C6—N1—C2—N3 | 2.8 (3) | C9—C10—C11—C12 | −0.1 (4) |
C4—N3—C2—O2 | 173.4 (2) | C10—C11—C12—C13 | 1.1 (4) |
C4—N3—C2—N1 | −6.2 (3) | C11—C12—C13—C8 | −0.2 (4) |
C2—N3—C4—O4 | −174.6 (2) | C9—C8—C13—C12 | −1.7 (3) |
C2—N3—C4—C5 | 5.8 (3) | N6—C8—C13—C12 | −179.87 (19) |
O7—N5—C5—C6 | −169.02 (19) | C7—N7—C14—C15 | −141.8 (2) |
O8—N5—C5—C6 | 12.0 (3) | C7—N7—C14—C19 | 39.8 (3) |
O7—N5—C5—C4 | 9.4 (3) | C19—C14—C15—C16 | −0.8 (4) |
O8—N5—C5—C4 | −169.6 (2) | N7—C14—C15—C16 | −179.2 (2) |
O4—C4—C5—C6 | 178.0 (2) | C14—C15—C16—C17 | −0.2 (5) |
N3—C4—C5—C6 | −2.4 (3) | C15—C16—C17—C18 | 0.4 (5) |
O4—C4—C5—N5 | −0.4 (3) | C16—C17—C18—C19 | 0.3 (4) |
N3—C4—C5—N5 | 179.21 (18) | C17—C18—C19—C14 | −1.3 (3) |
C2—N1—C6—C5 | 0.1 (3) | C15—C14—C19—C18 | 1.5 (3) |
N5—C5—C6—N1 | 178.24 (18) | N7—C14—C19—C18 | 179.85 (18) |
C4—C5—C6—N1 | −0.2 (3) | C7—N8—C20—C25 | −136.65 (19) |
C14—N7—C7—N6 | −152.77 (18) | C7—N8—C20—C21 | 45.7 (3) |
C14—N7—C7—N8 | 26.0 (3) | C25—C20—C21—C22 | 1.2 (3) |
C8—N6—C7—N7 | −168.86 (18) | N8—C20—C21—C22 | 178.88 (19) |
C8—N6—C7—N8 | 12.4 (3) | C20—C21—C22—C23 | −0.6 (4) |
C20—N8—C7—N7 | 31.5 (3) | C21—C22—C23—C24 | −0.4 (4) |
C20—N8—C7—N6 | −149.75 (18) | C22—C23—C24—C25 | 0.8 (4) |
C7—N6—C8—C9 | 34.2 (3) | C21—C20—C25—C24 | −0.8 (3) |
C7—N6—C8—C13 | −147.7 (2) | N8—C20—C25—C24 | −178.5 (2) |
C13—C8—C9—C10 | 2.7 (3) | C23—C24—C25—C20 | −0.2 (4) |
N6—C8—C9—C10 | −179.3 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
N6—H6A···O2i | 0.86 | 1.94 | 2.794 (2) | 174 |
N7—H7···N1i | 0.86 | 2.21 | 2.934 (2) | 142 |
N8—H8···O4ii | 0.86 | 2.05 | 2.887 (2) | 163 |
Symmetry codes: (i) −x+2, −y, −z+1; (ii) x, −y+1/2, z−1/2. |
Experimental details
Crystal data | |
Chemical formula | C19H18N3+·C4H2N3O4− |
Mr | 444.45 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 293 |
a, b, c (Å) | 10.7495 (4), 15.6892 (7), 15.5624 (7) |
β (°) | 123.456 (3) |
V (Å3) | 2189.74 (18) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.10 |
Crystal size (mm) | 0.34 × 0.20 × 0.12 |
Data collection | |
Diffractometer | Bruker APEX2 CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 2003) |
Tmin, Tmax | 0.822, 0.989 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 47807, 5534, 2650 |
Rint | 0.086 |
(sin θ/λ)max (Å−1) | 0.674 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.050, 0.154, 0.99 |
No. of reflections | 5534 |
No. of parameters | 299 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.22, −0.17 |
Computer programs: SMART (Bruker, 2005), SAINT (Bruker, 2005), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), PLATON (Spek, 2003).
D—H···A | D—H | H···A | D···A | D—H···A |
N6—H6A···O2i | 0.86 | 1.94 | 2.794 (2) | 173.5 |
N7—H7···N1i | 0.86 | 2.21 | 2.934 (2) | 142.2 |
N8—H8···O4ii | 0.86 | 2.05 | 2.887 (2) | 162.9 |
Symmetry codes: (i) −x+2, −y, −z+1; (ii) x, −y+1/2, z−1/2. |
Acknowledgements
This work was supported by Fundação para a Ciência e a Tecnologia (FCT) under project POCI/FIS/58309/2004
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
5-Nitrouracil is currently of prime interest to the non-linear optical community (Puccetti et al., 1993; Youping et al., 1992) and is also of relevance to the biological and pharmaceutical sciences (Rao et al., 1995; Pettier & Byrn, 1982).
Much of the interest in guanidine compounds and its derivatives is due to their biological activity, in particular their neuroleptic and antipsychotic properties (Weber et al., 1986; Largent et al., 1987). Our interest is focused on the physical properties of guanidine compounds, which are regarded as potentially interesting for non-linear optics applications (Zyss et al., 1993). We are currently engaged in a research project aimed at investigating the structural, dielectric and optical properties of triphenylguanidine compounds.
Compound (I) (Fig.1) is built up from triphenylguanidinium cations and 5-nitrouracilate anions. The pyrimidine ring is almost planar with a slight distortion towards a boat configuration. The nitro group is rotated 11.4 (2)° out of the plane of the uracil fragment. The central guanidine fragment of the cation of the title salt is planar with bond lengths and angles close to those expected for a central Csp2 atom, accounting for some charge delocalization between the three C—N bonds. The bond lengths C7—N6 [1.333 (2) Å], C7—N7 [1.330 (2) Å] and C7—N8 [1.337 (2) Å] are comparable with literature averages for substituted and unsubstituted guanidinium cations (1.321 and 1.328 Å, respectively; Allen et al., 1987)
The dihedral angles between the ring planes and the plane defined by the central guanidinium fragment are 41.3 (1)(C8—C13), 57.5 (1)(C14—C19) and 66.6 (1)° (C20—C25). The corresponding angles for other triphenylguanidinium salts reported in the literature are within the range 32.6 (3)–70.2 (3)° (Kemme et al., 1988; Klement et al., 1995; Pereira Silva et al., 2006, 2007a, 2007b, Pereira Silva, Cardoso et al.,(2007).
The anions and cations are linked into infinite helical chains running parallel to the b axis, via hydrogen bonds involving all the NH groups of the guanidinium fragment, the carbonyl O atoms and the deprotonated N atom of the anion (Fig. 2, Table 2). Atoms O2 and N1 accept each one H atom across a crystallographic centre of symmetry, while the O4 atom accept one hydrogen from the N8 atom related by a twofold screw axis.