organic compounds
(2R,3S)-2-Ammonio-3-hydroxy-3-(4-nitrophenyl)propanoic acid chloride monohydrate
aLaboratoire de Chimie Physique, EA 4231, Faculté de Pharmacie, Université d'Auvergne, 63001 Clermont-Ferrand, France, bLaboratoire de Chimie Thérapeutique, EA 4231, Faculté de Pharmacie, Université d'Auvergne, 63001 Clermont-Ferrand, France, and cChimie Organique, Faculté de Chimie, 443011 Samara, Russian Federation
*Correspondence e-mail: vincent.gaumet@u-clermont1.fr
The title compound, C9H11N2O5+·Cl−·H2O, was synthesized from (1S,2S)-2-amino-1-(4-nitrophenyl)propane-1,3-diol in four steps. As demonstrated by this work, no occurs during this synthetic procedure. The displays many intermolecular hydrogen bonds between the acidic cation, chloride anions and the water molecules, forming a three-dimensional network. An intramolecular bond between the ammonium group and a hydroxyl O atom is also present.
Related literature
For related compounds see: Crich et al. (2007); Di Giovanni et al. (1996); Easton et al. (1996); Madesclaire et al. (2006, 2007); Steinreiber et al. (2007); Zaitsev et al. (1998).
Experimental
Crystal data
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Data collection: CAD-4 Software (Enraf–Nonius, 1989); cell CAD-4 Software; data reduction: XCAD4 (Harms, 1996); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and PLATON (Spek, 2003); software used to prepare material for publication: SHELXL97.
Supporting information
10.1107/S1600536808012750/cs2076sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536808012750/cs2076Isup2.hkl
Figure 1 summarizes the synthetic route used (Madesclaire et al., 2006 and 2007). Crystals suitable for an X-ray diffraction study were obtained by slow evaporation of a water solution containing compound (V).
The structure was solved by
and refined with anisotropic temperature factors for non-H atoms. All H atoms were found from difference Fourier maps. The H atoms were all refined isotropically with no constraints.Data collection: CAD-4 Software (Enraf–Nonius, 1989); cell
CAD-4 Software (Enraf–Nonius, 1989); data reduction: XCAD4 (Harms, 1996); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and PLATON (Spek, 2003).Fig. 1. Synthesis of the title compound (V). | |
Fig. 2. The molecular structure of the title compound (V), with atom labels and 50% probability displacement ellipsoids for non-H atoms. | |
Fig. 3. Crystal packing of the title compound. Intra and intermolecular hydrogen bonds are shown as dashed lines. H atoms not involved in the interactions have been omitted. |
C9H11N2O5+·Cl−·H2O | F(000) = 292 |
Mr = 280.66 | Dx = 1.479 Mg m−3 |
Monoclinic, P21 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2yb | Cell parameters from 25 reflections |
a = 8.1286 (17) Å | θ = 8–18° |
b = 5.056 (3) Å | µ = 0.33 mm−1 |
c = 15.848 (3) Å | T = 293 K |
β = 104.626 (17)° | Elongated prism, colourless |
V = 630.2 (4) Å3 | 0.49 × 0.25 × 0.20 mm |
Z = 2 |
Enraf–Nonius CAD-4 diffractometer | 5058 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.022 |
Graphite monochromator | θmax = 35.0°, θmin = 1.3° |
ω/2θ scans | h = −13→13 |
Absorption correction: ψ scan (North et al., 1968) | k = −8→8 |
Tmin = 0.872, Tmax = 0.931 | l = −25→25 |
6026 measured reflections | 3 standard reflections every 63 reflections |
5517 independent reflections | intensity decay: 3% |
Refinement on F2 | Hydrogen site location: inferred from neighbouring sites |
Least-squares matrix: full | All H-atom parameters refined |
R[F2 > 2σ(F2)] = 0.043 | w = 1/[σ2(Fo2) + (0.0825P)2 + 0.0202P] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.115 | (Δ/σ)max = 0.001 |
S = 1.09 | Δρmax = 0.60 e Å−3 |
5517 reflections | Δρmin = −0.63 e Å−3 |
216 parameters | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
1 restraint | Extinction coefficient: 0.089 (10) |
Primary atom site location: structure-invariant direct methods | Absolute structure: Flack (1983), 2752 Friedel pairs |
Secondary atom site location: difference Fourier map | Absolute structure parameter: 0.00 (4) |
C9H11N2O5+·Cl−·H2O | V = 630.2 (4) Å3 |
Mr = 280.66 | Z = 2 |
Monoclinic, P21 | Mo Kα radiation |
a = 8.1286 (17) Å | µ = 0.33 mm−1 |
b = 5.056 (3) Å | T = 293 K |
c = 15.848 (3) Å | 0.49 × 0.25 × 0.20 mm |
β = 104.626 (17)° |
Enraf–Nonius CAD-4 diffractometer | 5058 reflections with I > 2σ(I) |
Absorption correction: ψ scan (North et al., 1968) | Rint = 0.022 |
Tmin = 0.872, Tmax = 0.931 | 3 standard reflections every 63 reflections |
6026 measured reflections | intensity decay: 3% |
5517 independent reflections |
R[F2 > 2σ(F2)] = 0.043 | All H-atom parameters refined |
wR(F2) = 0.115 | Δρmax = 0.60 e Å−3 |
S = 1.09 | Δρmin = −0.63 e Å−3 |
5517 reflections | Absolute structure: Flack (1983), 2752 Friedel pairs |
216 parameters | Absolute structure parameter: 0.00 (4) |
1 restraint |
Experimental. North A.C.T., Phillips D.C. & Mathews F.S. (1968) Acta. Cryst. A24, 351. Number of psi-scan sets used was 4. Theta correction was applied. Weighted transmission curves were used. No Fourier smoothing was applied. |
x | y | z | Uiso*/Ueq | ||
Cl | 0.71520 (3) | 0.93514 (6) | 0.922526 (17) | 0.03591 (8) | |
C1 | −0.00336 (13) | 1.2561 (2) | 0.83505 (7) | 0.02674 (16) | |
C2 | 0.09722 (12) | 1.00092 (18) | 0.85613 (6) | 0.02405 (15) | |
C3 | 0.27337 (13) | 1.0067 (2) | 0.83713 (6) | 0.02743 (16) | |
C4 | 0.26848 (14) | 1.0458 (2) | 0.74189 (7) | 0.02986 (18) | |
C5 | 0.3717 (2) | 1.2362 (3) | 0.71889 (9) | 0.0427 (3) | |
C6 | 0.3767 (3) | 1.2672 (4) | 0.63235 (10) | 0.0499 (4) | |
C7 | 0.2774 (2) | 1.1044 (3) | 0.57084 (8) | 0.0415 (3) | |
C8 | 0.1743 (2) | 0.9107 (4) | 0.59137 (9) | 0.0506 (4) | |
C9 | 0.1720 (2) | 0.8796 (3) | 0.67820 (9) | 0.0459 (3) | |
N10 | 0.12271 (11) | 0.9477 (2) | 0.95052 (5) | 0.02702 (14) | |
N11 | 0.2786 (2) | 1.1354 (4) | 0.47874 (9) | 0.0569 (4) | |
O12 | −0.08726 (19) | 1.2705 (3) | 0.75327 (6) | 0.0491 (3) | |
O13 | −0.00519 (12) | 1.42165 (18) | 0.88974 (5) | 0.03491 (16) | |
O14 | 0.34476 (13) | 0.7557 (2) | 0.86696 (7) | 0.03708 (19) | |
O15 | 0.1882 (3) | 0.9890 (7) | 0.42545 (9) | 0.0966 (9) | |
O16 | 0.3691 (3) | 1.3062 (5) | 0.45945 (10) | 0.0847 (6) | |
H2 | 0.034 (3) | 0.872 (5) | 0.8304 (13) | 0.037 (5)* | |
H3 | 0.343 (3) | 1.127 (5) | 0.8692 (13) | 0.032 (5)* | |
H5 | 0.445 (3) | 1.340 (6) | 0.7648 (17) | 0.052 (6)* | |
H6 | 0.453 (4) | 1.424 (10) | 0.620 (2) | 0.091 (10)* | |
H8 | 0.112 (5) | 0.807 (10) | 0.548 (2) | 0.087 (10)* | |
H9 | 0.090 (4) | 0.766 (8) | 0.6899 (19) | 0.073 (9)* | |
H101 | 0.032 (2) | 0.927 (4) | 0.9615 (10) | 0.025 (3)* | |
H102 | 0.186 (2) | 0.816 (4) | 0.9639 (12) | 0.030 (4)* | |
H103 | 0.174 (4) | 1.087 (7) | 0.9905 (16) | 0.058 (7)* | |
H12 | −0.147 (5) | 1.395 (10) | 0.743 (2) | 0.087 (10)* | |
H14 | 0.448 (3) | 0.778 (6) | 0.8856 (15) | 0.049 (6)* | |
O17 | 0.29100 (18) | 0.1787 (3) | 0.26402 (8) | 0.0491 (3) | |
H171 | 0.307 (4) | 0.250 (8) | 0.309 (2) | 0.073 (9)* | |
H172 | 0.290 (3) | 0.237 (6) | 0.2194 (17) | 0.053 (7)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl | 0.03069 (11) | 0.03544 (12) | 0.03887 (13) | 0.00116 (10) | 0.00372 (8) | −0.00215 (10) |
C1 | 0.0319 (4) | 0.0221 (3) | 0.0267 (4) | 0.0005 (3) | 0.0084 (3) | 0.0022 (3) |
C2 | 0.0281 (3) | 0.0200 (3) | 0.0249 (3) | −0.0009 (3) | 0.0083 (3) | 0.0000 (2) |
C3 | 0.0288 (4) | 0.0274 (4) | 0.0276 (4) | −0.0040 (3) | 0.0099 (3) | −0.0011 (3) |
C4 | 0.0339 (4) | 0.0297 (4) | 0.0287 (4) | −0.0028 (3) | 0.0130 (3) | −0.0025 (3) |
C5 | 0.0576 (7) | 0.0393 (6) | 0.0359 (5) | −0.0182 (6) | 0.0206 (5) | −0.0051 (4) |
C6 | 0.0705 (10) | 0.0481 (7) | 0.0377 (6) | −0.0171 (7) | 0.0260 (6) | −0.0004 (5) |
C7 | 0.0531 (7) | 0.0457 (7) | 0.0295 (5) | 0.0025 (5) | 0.0176 (5) | 0.0005 (4) |
C8 | 0.0595 (8) | 0.0634 (10) | 0.0304 (5) | −0.0190 (8) | 0.0141 (5) | −0.0110 (6) |
C9 | 0.0582 (8) | 0.0504 (8) | 0.0323 (5) | −0.0227 (6) | 0.0172 (5) | −0.0090 (5) |
N10 | 0.0337 (3) | 0.0226 (3) | 0.0266 (3) | 0.0022 (3) | 0.0110 (2) | 0.0036 (3) |
N11 | 0.0739 (10) | 0.0692 (11) | 0.0324 (5) | −0.0018 (8) | 0.0221 (6) | 0.0009 (6) |
O12 | 0.0684 (7) | 0.0451 (5) | 0.0274 (4) | 0.0240 (5) | 0.0005 (4) | 0.0003 (4) |
O13 | 0.0471 (4) | 0.0216 (3) | 0.0339 (3) | 0.0039 (3) | 0.0062 (3) | −0.0026 (3) |
O14 | 0.0310 (4) | 0.0371 (4) | 0.0441 (5) | 0.0061 (3) | 0.0112 (3) | 0.0058 (4) |
O15 | 0.1309 (16) | 0.127 (2) | 0.0336 (5) | −0.0504 (17) | 0.0250 (8) | −0.0151 (8) |
O16 | 0.1330 (17) | 0.0846 (12) | 0.0465 (7) | −0.0305 (13) | 0.0414 (9) | 0.0055 (8) |
O17 | 0.0652 (7) | 0.0431 (5) | 0.0357 (5) | −0.0145 (5) | 0.0070 (4) | 0.0004 (4) |
C1—O13 | 1.2078 (14) | C7—C8 | 1.380 (2) |
C1—O12 | 1.3053 (14) | C7—N11 | 1.4704 (17) |
C1—C2 | 1.5188 (15) | C8—C9 | 1.3898 (18) |
C2—N10 | 1.4821 (12) | C8—H8 | 0.91 (4) |
C2—C3 | 1.5360 (14) | C9—H9 | 0.94 (4) |
C2—H2 | 0.87 (2) | N10—H101 | 0.810 (17) |
C3—O14 | 1.4253 (16) | N10—H102 | 0.83 (2) |
C3—C4 | 1.5128 (14) | N10—H103 | 0.97 (3) |
C3—H3 | 0.90 (2) | N11—O15 | 1.219 (3) |
C4—C5 | 1.3851 (17) | N11—O16 | 1.222 (3) |
C4—C9 | 1.3931 (18) | O12—H12 | 0.78 (5) |
C5—C6 | 1.3913 (19) | O14—H14 | 0.82 (3) |
C5—H5 | 0.97 (3) | O17—H171 | 0.78 (3) |
C6—C7 | 1.372 (2) | O17—H172 | 0.76 (3) |
C6—H6 | 1.05 (4) | ||
O13—C1—O12 | 125.15 (11) | C5—C6—H6 | 115.3 (17) |
O13—C1—C2 | 122.31 (10) | C6—C7—C8 | 122.79 (12) |
O12—C1—C2 | 112.53 (9) | C6—C7—N11 | 119.42 (14) |
N10—C2—C1 | 107.85 (8) | C8—C7—N11 | 117.79 (14) |
N10—C2—C3 | 107.55 (8) | C7—C8—C9 | 118.33 (14) |
C1—C2—C3 | 114.68 (8) | C7—C8—H8 | 119 (3) |
N10—C2—H2 | 104.6 (14) | C9—C8—H8 | 123 (3) |
C1—C2—H2 | 108.4 (15) | C8—C9—C4 | 120.22 (13) |
C3—C2—H2 | 113.1 (14) | C8—C9—H9 | 117.0 (19) |
O14—C3—C4 | 110.69 (9) | C4—C9—H9 | 121.9 (19) |
O14—C3—C2 | 103.87 (8) | C2—N10—H101 | 109.8 (11) |
C4—C3—C2 | 114.02 (9) | C2—N10—H102 | 108.8 (13) |
O14—C3—H3 | 105.5 (14) | H101—N10—H102 | 112 (2) |
C4—C3—H3 | 109.3 (13) | C2—N10—H103 | 117.1 (17) |
C2—C3—H3 | 113.1 (13) | H101—N10—H103 | 102 (2) |
C5—C4—C9 | 119.76 (11) | H102—N10—H103 | 106 (2) |
C5—C4—C3 | 119.24 (10) | O15—N11—O16 | 123.43 (16) |
C9—C4—C3 | 120.81 (10) | O15—N11—C7 | 117.97 (18) |
C4—C5—C6 | 120.54 (13) | O16—N11—C7 | 118.60 (17) |
C4—C5—H5 | 118.4 (17) | C1—O12—H12 | 113 (2) |
C6—C5—H5 | 120.9 (17) | C3—O14—H14 | 107 (2) |
C7—C6—C5 | 118.32 (13) | H171—O17—H172 | 129 (4) |
C7—C6—H6 | 126.2 (17) | ||
O15—N11—C7—C6 | −179.5 (2) | O14—C3—C4—C9 | 62.57 (15) |
O16—N11—C7—C6 | 0.2 (3) | O14—C3—C4—C5 | −112.37 (13) |
O15—N11—C7—C8 | 0.2 (3) | C2—C3—C4—C9 | −54.08 (14) |
O16—N11—C7—C8 | 179.9 (2) | C5—C4—C9—C8 | −2.4 (2) |
O12—C1—C2—C3 | 84.78 (12) | C3—C4—C9—C8 | −177.27 (13) |
O12—C1—C2—N10 | −155.44 (11) | C9—C4—C5—C6 | 1.6 (2) |
O13—C1—C2—N10 | 23.39 (14) | C3—C4—C5—C6 | 176.57 (15) |
O13—C1—C2—C3 | −96.39 (12) | C4—C5—C6—C7 | −0.2 (3) |
C1—C2—C3—O14 | 176.50 (9) | C5—C6—C7—N11 | 179.19 (18) |
C1—C2—C3—C4 | −62.95 (11) | C5—C6—C7—C8 | −0.5 (3) |
N10—C2—C3—C4 | 177.11 (8) | C6—C7—C8—C9 | −0.2 (3) |
N10—C2—C3—O14 | 56.56 (10) | N11—C7—C8—C9 | −179.96 (17) |
C2—C3—C4—C5 | 130.98 (12) | C7—C8—C9—C4 | 1.7 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
N10—H101···O13i | 0.810 (17) | 2.420 (16) | 2.9259 (13) | 121.5 (14) |
N10—H101···Clii | 0.810 (17) | 2.489 (16) | 3.2298 (11) | 152.7 (15) |
N10—H102···O14 | 0.83 (2) | 2.265 (19) | 2.6759 (14) | 110.8 (16) |
N10—H102···Cliii | 0.83 (2) | 2.62 (2) | 3.3409 (14) | 145.5 (16) |
N10—H103···Cliv | 0.97 (3) | 2.28 (3) | 3.2435 (14) | 176 (3) |
O12—H12···O17v | 0.78 (5) | 1.84 (5) | 2.6168 (19) | 171 (4) |
O14—H14···Cl | 0.82 (3) | 2.25 (3) | 3.0539 (13) | 166 (3) |
O17—H171···O16vi | 0.78 (3) | 2.33 (3) | 3.069 (2) | 159 (4) |
O17—H172···Clvii | 0.76 (3) | 2.45 (3) | 3.2170 (13) | 178 (3) |
Symmetry codes: (i) −x, y−1/2, −z+2; (ii) x−1, y, z; (iii) −x+1, y−1/2, −z+2; (iv) −x+1, y+1/2, −z+2; (v) −x, y+3/2, −z+1; (vi) x, y−1, z; (vii) −x+1, y−1/2, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C9H11N2O5+·Cl−·H2O |
Mr | 280.66 |
Crystal system, space group | Monoclinic, P21 |
Temperature (K) | 293 |
a, b, c (Å) | 8.1286 (17), 5.056 (3), 15.848 (3) |
β (°) | 104.626 (17) |
V (Å3) | 630.2 (4) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.33 |
Crystal size (mm) | 0.49 × 0.25 × 0.20 |
Data collection | |
Diffractometer | Enraf–Nonius CAD-4 diffractometer |
Absorption correction | ψ scan (North et al., 1968) |
Tmin, Tmax | 0.872, 0.931 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 6026, 5517, 5058 |
Rint | 0.022 |
(sin θ/λ)max (Å−1) | 0.806 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.043, 0.115, 1.09 |
No. of reflections | 5517 |
No. of parameters | 216 |
No. of restraints | 1 |
H-atom treatment | All H-atom parameters refined |
Δρmax, Δρmin (e Å−3) | 0.60, −0.63 |
Absolute structure | Flack (1983), 2752 Friedel pairs |
Absolute structure parameter | 0.00 (4) |
Computer programs: CAD-4 Software (Enraf–Nonius, 1989), XCAD4 (Harms, 1996), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997) and PLATON (Spek, 2003).
D—H···A | D—H | H···A | D···A | D—H···A |
N10—H101···O13i | 0.810 (17) | 2.420 (16) | 2.9259 (13) | 121.5 (14) |
N10—H101···Clii | 0.810 (17) | 2.489 (16) | 3.2298 (11) | 152.7 (15) |
N10—H102···O14 | 0.83 (2) | 2.265 (19) | 2.6759 (14) | 110.8 (16) |
N10—H102···Cliii | 0.83 (2) | 2.62 (2) | 3.3409 (14) | 145.5 (16) |
N10—H103···Cliv | 0.97 (3) | 2.28 (3) | 3.2435 (14) | 176 (3) |
O12—H12···O17v | 0.78 (5) | 1.84 (5) | 2.6168 (19) | 171 (4) |
O14—H14···Cl | 0.82 (3) | 2.25 (3) | 3.0539 (13) | 166 (3) |
O17—H171···O16vi | 0.78 (3) | 2.33 (3) | 3.069 (2) | 159 (4) |
O17—H172···Clvii | 0.76 (3) | 2.45 (3) | 3.2170 (13) | 178 (3) |
Symmetry codes: (i) −x, y−1/2, −z+2; (ii) x−1, y, z; (iii) −x+1, y−1/2, −z+2; (iv) −x+1, y+1/2, −z+2; (v) −x, y+3/2, −z+1; (vi) x, y−1, z; (vii) −x+1, y−1/2, −z+1. |
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Preparation of new α-amino acids are of constant interest. (1S,2S) and (1R,2R)-2-amino-1- (4-nitrophenyl)-1,3-propanediols, byproducts in the manufacture of the antibiotic Chloramphenicol (Zaitsev et al., 1998), can be used as starting materials in the preparation of corresponding α-amino acid isomers. The title compound (V) was synthesized from (1S,2S)-2-amino-1- (4-nitrophenyl)-1,3-propanediol (I) in four steps according to Figure 1. The intermediate formation of the 2-oxazolidinone derivative (III) allowed to protect both the adjacent amino and hydroxyl groups (Di Giovanni et al., 1996; Crich et al., 2007). The absolute configuration, determined using anomalous dispersion by chlorine, confirms the R and S configurations respectively for C2 and C3 atoms, confirming that no racemization occurs during this synthetic route (note that the Cahn-Ingold-Prelog designation at the α-carbon of the hydroxyl group is reversed by comparison with that of the starting material due to the change in priority of the substituents). As expected, the phenyl ring is planar, r.m.s. deviation from the best plane is ca. 0.007Å. The nitro group is coplanar with the adjacent phenyl ring (O15—N11—C7—C8 = 0.2 (3)° and O16—N11—C7—C8 = 179.9 (2)°). However, the σ bond C7—N11 (1.4704 (17) Å) shows that there is no appreciable π delocalization in the bond between the sp2 hybridized N11 and the phenyl ring.