metal-organic compounds
An octanuclear zinc(II) complex with 6,6′-dihydroxy-2,2′-[1,2-phenylenebis(nitrilomethylidyne)]diphenol
aSchool of Chemical Science, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, bCrystal Materials Research Unit, Department of Chemistry, Faculty of Science, Prince of Songkla University, Hat-Yai, Songkhla 90112, Thailand, and cX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia
*Correspondence e-mail: hkfun@usm.my
The μ3-6,6′-dioxido-2,2′-[1,2-phenylenebis(nitrilomethylidyne)]diphenolato}octazinc(II) dimethyl sulfoxide tetrasolvate dihydrate, [Zn8(C20H12N2O4)4(H2O)4]·4C2H6OS·2H2O, contains one quarter of a ZnII octanuclear complex with symmetry, one dimethyl sulfoxide molecule and one half of a water molecule which lies on a twofold rotation axis. The ZnII atoms of the octanuclear complex have two different five-coordinate environments, viz. ZnN2O3 and ZnO5. All eight ZnII centers adopt a distorted square-pyramidal coordination; four ZnII ions have the N2O2 tetradentate Schiff base ligand bound in a basal plane and the coordinated water molecule occupying the apical site, while the remaing four ZnII ions are bound by five O atoms from three Schiff base ligands. In the ZnII complex molecules, coordinated and uncoordinated water molecules and dimethyl sulfoxide molecules are linked via O—H⋯O and C—H⋯O hydrogen bonds and C—H⋯π interactions, forming a three-dimensional framework.
of the title compound, tetraaquatetrakis{Related literature
For related literatures on Schiff base ZnII coordination complexes, see: Basak et al. 2007; Collinson & Fenton (1996); Pal et al. (2005); Tarafder et al. (2002). For related structures, see: Eltayeb et al. (2007a,b,c). For bond-length data, see: Allen et al. (1987).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2005); cell APEX2; data reduction: SAINT (Bruker, 2005); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2003).
Supporting information
10.1107/S1600536808017340/ci2611sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536808017340/ci2611Isup2.hkl
The title compound was synthesized by adding 2,3-dihydroxybenzaldehyde (0.552 g, 4 mmol) to a solution of o-phenylenediamine (0.216 g, 2 mmol) in ethanol 95% (20 ml). The mixture was refluxed with stirring for 30 min. Zinc chloride (0.544 g, 4 mmol) in ethanol (10 ml) was then added, followed by triethylamine (1.0 ml, 7.2 mmol). The mixture was stirred at room temperature for 3 h. The yellow precipitate obtained was washed with about 5 ml e thanol, dried, and then washed with copious amounts of diethylether. Orange single crystals of the title compound suitable for X-ray diffraction were formed after recrystallization in the dimethyl sulfoxide/ethanol (3:5 v/v) at room temperature after several days.
Water H atoms were found in the difference map and their positions were refined with a restrained geometry, with O—H = 0.84 (2) Å and H···H = 1.37 (2) Å. The remaining H atoms are placed in calculated positions with d(C—H) = 0.93 Å, Uiso = 1.2Ueq(C) for CH and aromatic and 0.96 Å, Uiso = 1.5Ueq(C) for CH3 atoms. A rotating group model was used for the methyl groups. The highest residual electron density peak is located at 0.36 Å from H22C and the deepest hole is located at 0.47 Å from S1.
Data collection: APEX2 (Bruker, 2005); cell
APEX2 (Bruker, 2005); data reduction: SAINT (Bruker, 2005); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2003).Fig. 1. The asymmetric unit of the title compound. Displacement ellipsoids are drawn at the 50% probability level. | |
Fig. 2. The molecular structure of the octanuclear complex, showing 50% probability displacement ellipsoids and the atomic numbering. H atoms of the ZnII complex, DMSO and solvated water molecules have been omitted for clarity. Symmetry codes: (A) 1/2 - y, x, 1/2 - z; (B) y, 1/2 - x, 1/2 - z; (C) 1/2 - x, 1/2 - y, z. | |
Fig. 3. The crystal packing of the title compound, viewed along the c axis, showing sheets parallel to the ab plane. Hydrogen bonds are shown as dashed lines. |
[Zn8(C20H12N2O4)4(H2O)4]·4C2H6OS·2H2O | Dx = 1.752 Mg m−3 |
Mr = 2321.03 | Mo Kα radiation, λ = 0.71073 Å |
Tetragonal, P42/n | Cell parameters from 5851 reflections |
Hall symbol: -P 4bc | θ = 2.9–29.0° |
a = 18.1324 (3) Å | µ = 2.32 mm−1 |
c = 13.3813 (3) Å | T = 100 K |
V = 4399.56 (14) Å3 | Needle, orange |
Z = 2 | 0.57 × 0.13 × 0.10 mm |
F(000) = 2360 |
Bruker SMART APEXII CCD area-detector diffractometer | 5851 independent reflections |
Radiation source: fine-focus sealed tube | 3700 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.085 |
Detector resolution: 8.33 pixels mm-1 | θmax = 29.0°, θmin = 2.9° |
ω scans | h = −24→11 |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | k = −24→24 |
Tmin = 0.352, Tmax = 0.796 | l = −18→18 |
26700 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.050 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.138 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.02 | w = 1/[σ2(Fo2) + (0.0592P)2 + 6.834P] where P = (Fo2 + 2Fc2)/3 |
5851 reflections | (Δ/σ)max = 0.001 |
314 parameters | Δρmax = 0.67 e Å−3 |
6 restraints | Δρmin = −1.34 e Å−3 |
[Zn8(C20H12N2O4)4(H2O)4]·4C2H6OS·2H2O | Z = 2 |
Mr = 2321.03 | Mo Kα radiation |
Tetragonal, P42/n | µ = 2.32 mm−1 |
a = 18.1324 (3) Å | T = 100 K |
c = 13.3813 (3) Å | 0.57 × 0.13 × 0.10 mm |
V = 4399.56 (14) Å3 |
Bruker SMART APEXII CCD area-detector diffractometer | 5851 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | 3700 reflections with I > 2σ(I) |
Tmin = 0.352, Tmax = 0.796 | Rint = 0.085 |
26700 measured reflections |
R[F2 > 2σ(F2)] = 0.050 | 6 restraints |
wR(F2) = 0.138 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.02 | Δρmax = 0.67 e Å−3 |
5851 reflections | Δρmin = −1.34 e Å−3 |
314 parameters |
Experimental. The low-temparture data was collected with the Oxford Cyrosystem Cobra low-temperature attachment. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Zn1 | 0.22916 (3) | 0.46426 (3) | 0.07015 (4) | 0.01886 (13) | |
Zn2 | 0.34013 (2) | 0.35177 (2) | 0.24587 (4) | 0.01728 (13) | |
O1 | 0.35359 (15) | 0.25401 (15) | 0.1791 (2) | 0.0188 (6) | |
O2 | 0.28402 (15) | 0.36961 (15) | 0.1029 (2) | 0.0192 (6) | |
O3 | 0.14565 (15) | 0.43546 (15) | 0.1585 (2) | 0.0189 (6) | |
O4 | 0.05238 (16) | 0.38411 (16) | 0.2903 (3) | 0.0277 (7) | |
N1 | 0.26712 (19) | 0.45884 (18) | −0.0754 (3) | 0.0210 (7) | |
N2 | 0.1627 (2) | 0.54198 (19) | −0.0038 (3) | 0.0233 (8) | |
C1 | 0.3139 (2) | 0.3234 (2) | 0.0380 (3) | 0.0177 (8) | |
C2 | 0.3494 (2) | 0.2598 (2) | 0.0780 (3) | 0.0182 (8) | |
C3 | 0.3795 (2) | 0.2079 (2) | 0.0141 (3) | 0.0222 (9) | |
H3A | 0.4019 | 0.1661 | 0.0407 | 0.027* | |
C4 | 0.3768 (3) | 0.2170 (2) | −0.0899 (4) | 0.0282 (10) | |
H4A | 0.3952 | 0.1805 | −0.1320 | 0.034* | |
C5 | 0.3471 (2) | 0.2795 (2) | −0.1285 (3) | 0.0248 (9) | |
H5A | 0.3470 | 0.2861 | −0.1974 | 0.030* | |
C6 | 0.3166 (2) | 0.3342 (2) | −0.0672 (3) | 0.0216 (9) | |
C7 | 0.2939 (2) | 0.4005 (2) | −0.1172 (3) | 0.0231 (9) | |
H7A | 0.2990 | 0.4016 | −0.1863 | 0.028* | |
C8 | 0.2508 (2) | 0.5228 (2) | −0.1328 (3) | 0.0234 (9) | |
C9 | 0.2866 (3) | 0.5429 (3) | −0.2203 (4) | 0.0296 (10) | |
H9A | 0.3238 | 0.5133 | −0.2462 | 0.035* | |
C10 | 0.2663 (3) | 0.6077 (3) | −0.2689 (4) | 0.0349 (12) | |
H10A | 0.2893 | 0.6207 | −0.3285 | 0.042* | |
C11 | 0.2123 (3) | 0.6529 (3) | −0.2295 (4) | 0.0326 (11) | |
H11A | 0.1990 | 0.6959 | −0.2626 | 0.039* | |
C12 | 0.1781 (3) | 0.6342 (2) | −0.1410 (4) | 0.0278 (10) | |
H12A | 0.1428 | 0.6655 | −0.1138 | 0.033* | |
C13 | 0.1960 (2) | 0.5688 (2) | −0.0920 (3) | 0.0218 (9) | |
C14 | 0.0969 (2) | 0.5594 (2) | 0.0204 (4) | 0.0250 (9) | |
H14A | 0.0727 | 0.5940 | −0.0191 | 0.030* | |
C15 | 0.0574 (2) | 0.5294 (2) | 0.1044 (3) | 0.0223 (9) | |
C16 | −0.0143 (2) | 0.5597 (2) | 0.1196 (4) | 0.0261 (10) | |
H16A | −0.0298 | 0.5988 | 0.0797 | 0.031* | |
C17 | −0.0604 (2) | 0.5332 (2) | 0.1905 (4) | 0.0269 (10) | |
H17A | −0.1065 | 0.5546 | 0.1998 | 0.032* | |
C18 | −0.0388 (2) | 0.4735 (2) | 0.2496 (4) | 0.0250 (9) | |
H18A | −0.0707 | 0.4551 | 0.2978 | 0.030* | |
C19 | 0.0295 (2) | 0.4420 (2) | 0.2369 (3) | 0.0209 (9) | |
C20 | 0.0805 (2) | 0.4700 (2) | 0.1638 (3) | 0.0199 (9) | |
S1 | 0.42019 (7) | 0.60730 (7) | −0.06159 (11) | 0.0376 (3) | |
O5 | 0.3672 (2) | 0.6353 (2) | 0.0183 (3) | 0.0436 (9) | |
C21 | 0.5096 (3) | 0.6047 (3) | −0.0076 (5) | 0.0449 (14) | |
H21A | 0.5122 | 0.5650 | 0.0397 | 0.067* | |
H21B | 0.5192 | 0.6506 | 0.0258 | 0.067* | |
H21C | 0.5457 | 0.5972 | −0.0591 | 0.067* | |
C22 | 0.4357 (4) | 0.6846 (3) | −0.1418 (5) | 0.0504 (16) | |
H22A | 0.3913 | 0.6957 | −0.1778 | 0.076* | |
H22B | 0.4744 | 0.6731 | −0.1881 | 0.076* | |
H22C | 0.4498 | 0.7266 | −0.1023 | 0.076* | |
O1W | 0.29110 (16) | 0.53937 (16) | 0.1423 (3) | 0.0251 (7) | |
H1W1 | 0.321 (2) | 0.5050 (19) | 0.154 (4) | 0.038* | |
H2W1 | 0.311 (2) | 0.570 (2) | 0.105 (3) | 0.038* | |
O2W | 0.2500 | 0.7500 | 0.0625 (6) | 0.104 (3) | |
H1W2 | 0.278 (5) | 0.724 (5) | 0.026 (2) | 0.156* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Zn1 | 0.0204 (2) | 0.0191 (2) | 0.0171 (3) | 0.00136 (18) | 0.0007 (2) | 0.0010 (2) |
Zn2 | 0.0177 (2) | 0.0191 (2) | 0.0150 (2) | −0.00013 (18) | 0.0004 (2) | −0.0005 (2) |
O1 | 0.0245 (14) | 0.0182 (13) | 0.0139 (15) | 0.0013 (11) | −0.0015 (13) | 0.0006 (12) |
O2 | 0.0229 (14) | 0.0219 (14) | 0.0128 (14) | 0.0035 (11) | 0.0021 (12) | −0.0020 (12) |
O3 | 0.0182 (13) | 0.0181 (13) | 0.0205 (16) | 0.0015 (10) | −0.0001 (12) | 0.0022 (12) |
O4 | 0.0263 (15) | 0.0267 (15) | 0.0302 (19) | 0.0052 (12) | 0.0069 (15) | 0.0101 (15) |
N1 | 0.0245 (17) | 0.0203 (16) | 0.0181 (19) | 0.0016 (14) | 0.0011 (16) | 0.0018 (15) |
N2 | 0.0261 (18) | 0.0229 (17) | 0.021 (2) | 0.0033 (14) | 0.0014 (17) | 0.0014 (16) |
C1 | 0.0195 (19) | 0.0168 (18) | 0.017 (2) | −0.0004 (15) | −0.0013 (17) | −0.0030 (17) |
C2 | 0.0204 (18) | 0.0192 (18) | 0.015 (2) | 0.0001 (15) | 0.0052 (17) | −0.0002 (18) |
C3 | 0.025 (2) | 0.021 (2) | 0.020 (2) | 0.0031 (16) | 0.0047 (19) | 0.0000 (19) |
C4 | 0.041 (3) | 0.025 (2) | 0.019 (2) | 0.0074 (19) | 0.003 (2) | −0.0046 (19) |
C5 | 0.035 (2) | 0.026 (2) | 0.013 (2) | 0.0031 (18) | 0.0017 (19) | −0.0014 (19) |
C6 | 0.023 (2) | 0.023 (2) | 0.019 (2) | 0.0008 (16) | −0.0007 (19) | −0.0020 (19) |
C7 | 0.024 (2) | 0.030 (2) | 0.015 (2) | 0.0005 (17) | −0.0027 (19) | 0.0018 (19) |
C8 | 0.027 (2) | 0.022 (2) | 0.021 (2) | 0.0005 (17) | −0.004 (2) | 0.0010 (19) |
C9 | 0.036 (3) | 0.029 (2) | 0.023 (2) | 0.0043 (19) | 0.002 (2) | 0.004 (2) |
C10 | 0.045 (3) | 0.030 (2) | 0.030 (3) | −0.002 (2) | 0.007 (2) | 0.011 (2) |
C11 | 0.040 (3) | 0.028 (2) | 0.029 (3) | 0.002 (2) | −0.002 (2) | 0.009 (2) |
C12 | 0.029 (2) | 0.025 (2) | 0.030 (3) | 0.0036 (17) | 0.001 (2) | 0.002 (2) |
C13 | 0.022 (2) | 0.024 (2) | 0.019 (2) | 0.0000 (16) | −0.0007 (18) | 0.0058 (18) |
C14 | 0.029 (2) | 0.024 (2) | 0.022 (2) | 0.0078 (17) | −0.001 (2) | 0.0065 (19) |
C15 | 0.026 (2) | 0.0188 (19) | 0.022 (2) | 0.0027 (16) | −0.0011 (19) | −0.0004 (18) |
C16 | 0.030 (2) | 0.023 (2) | 0.026 (3) | 0.0071 (17) | −0.003 (2) | 0.001 (2) |
C17 | 0.027 (2) | 0.027 (2) | 0.026 (3) | 0.0071 (18) | 0.000 (2) | −0.001 (2) |
C18 | 0.025 (2) | 0.027 (2) | 0.023 (2) | −0.0004 (17) | 0.006 (2) | 0.000 (2) |
C19 | 0.0211 (19) | 0.0185 (18) | 0.023 (2) | −0.0011 (15) | −0.0010 (18) | −0.0030 (18) |
C20 | 0.0210 (19) | 0.0192 (19) | 0.020 (2) | 0.0004 (15) | −0.0038 (18) | −0.0025 (18) |
S1 | 0.0380 (7) | 0.0359 (7) | 0.0389 (8) | −0.0037 (5) | 0.0043 (6) | −0.0010 (6) |
O5 | 0.044 (2) | 0.045 (2) | 0.042 (2) | −0.0087 (17) | 0.0120 (19) | −0.0001 (19) |
C21 | 0.038 (3) | 0.057 (4) | 0.039 (3) | −0.005 (2) | 0.004 (3) | 0.001 (3) |
C22 | 0.062 (4) | 0.042 (3) | 0.048 (4) | 0.007 (3) | 0.021 (3) | 0.005 (3) |
O1W | 0.0260 (16) | 0.0203 (15) | 0.0290 (19) | −0.0008 (12) | −0.0009 (14) | −0.0011 (14) |
O2W | 0.134 (8) | 0.130 (8) | 0.047 (5) | 0.075 (6) | 0.000 | 0.000 |
Zn1—O3 | 1.990 (3) | C8—C9 | 1.387 (7) |
Zn1—O1W | 2.012 (3) | C8—C13 | 1.407 (6) |
Zn1—O2 | 2.032 (3) | C9—C10 | 1.393 (6) |
Zn1—N1 | 2.069 (4) | C9—H9A | 0.93 |
Zn1—N2 | 2.101 (4) | C10—C11 | 1.381 (7) |
Zn1—H1W1 | 2.13 (5) | C10—H10A | 0.93 |
Zn2—O4i | 1.973 (3) | C11—C12 | 1.379 (7) |
Zn2—O1ii | 1.981 (3) | C11—H11A | 0.93 |
Zn2—O1 | 2.000 (3) | C12—C13 | 1.393 (6) |
Zn2—O3i | 2.152 (3) | C12—H12A | 0.93 |
Zn2—O2 | 2.191 (3) | C14—C15 | 1.439 (6) |
O1—C2 | 1.359 (5) | C14—H14A | 0.93 |
O1—Zn2i | 1.981 (3) | C15—C20 | 1.403 (6) |
O2—C1 | 1.323 (5) | C15—C16 | 1.426 (6) |
O3—C20 | 1.339 (5) | C16—C17 | 1.353 (7) |
O3—Zn2ii | 2.152 (3) | C16—H16A | 0.93 |
O4—C19 | 1.336 (5) | C17—C18 | 1.396 (6) |
O4—Zn2ii | 1.973 (3) | C17—H17A | 0.93 |
N1—C7 | 1.291 (5) | C18—C19 | 1.374 (6) |
N1—C8 | 1.423 (5) | C18—H18A | 0.93 |
N2—C14 | 1.277 (5) | C19—C20 | 1.439 (6) |
N2—C13 | 1.412 (6) | S1—O5 | 1.525 (4) |
C1—C6 | 1.421 (6) | S1—C21 | 1.775 (6) |
C1—C2 | 1.425 (5) | S1—C22 | 1.787 (6) |
C2—C3 | 1.384 (6) | C21—H21A | 0.96 |
C3—C4 | 1.402 (6) | C21—H21B | 0.96 |
C3—H3A | 0.93 | C21—H21C | 0.96 |
C4—C5 | 1.356 (6) | C22—H22A | 0.96 |
C4—H4A | 0.93 | C22—H22B | 0.96 |
C5—C6 | 1.402 (6) | C22—H22C | 0.96 |
C5—H5A | 0.93 | O1W—H1W1 | 0.837 (19) |
C6—C7 | 1.436 (6) | O1W—H2W1 | 0.833 (19) |
C7—H7A | 0.93 | O2W—H1W2 | 0.846 (14) |
O3—Zn1—O1W | 108.50 (13) | N1—C7—H7A | 116.9 |
O3—Zn1—O2 | 91.31 (11) | C6—C7—H7A | 116.9 |
O1W—Zn1—O2 | 101.24 (12) | C9—C8—C13 | 120.2 (4) |
O3—Zn1—N1 | 143.11 (13) | C9—C8—N1 | 124.8 (4) |
O1W—Zn1—N1 | 107.36 (14) | C13—C8—N1 | 114.9 (4) |
O2—Zn1—N1 | 90.00 (12) | C8—C9—C10 | 119.5 (4) |
O3—Zn1—N2 | 91.11 (13) | C8—C9—H9A | 120.3 |
O1W—Zn1—N2 | 95.28 (13) | C10—C9—H9A | 120.3 |
O2—Zn1—N2 | 161.59 (13) | C11—C10—C9 | 120.6 (5) |
N1—Zn1—N2 | 77.25 (14) | C11—C10—H10A | 119.7 |
O3—Zn1—H1W1 | 111.9 (13) | C9—C10—H10A | 119.7 |
O1W—Zn1—H1W1 | 23.1 (7) | C12—C11—C10 | 120.1 (4) |
O2—Zn1—H1W1 | 78.4 (6) | C12—C11—H11A | 120.0 |
N1—Zn1—H1W1 | 104.5 (13) | C10—C11—H11A | 120.0 |
N2—Zn1—H1W1 | 117.4 (6) | C11—C12—C13 | 120.6 (4) |
O4i—Zn2—O1ii | 117.28 (13) | C11—C12—H12A | 119.7 |
O4i—Zn2—O1 | 128.45 (13) | C13—C12—H12A | 119.7 |
O1ii—Zn2—O1 | 110.27 (16) | C12—C13—C8 | 119.1 (4) |
O4i—Zn2—O3i | 78.59 (12) | C12—C13—N2 | 126.0 (4) |
O1ii—Zn2—O3i | 112.98 (12) | C8—C13—N2 | 114.9 (4) |
O1—Zn2—O3i | 100.78 (11) | N2—C14—C15 | 124.8 (4) |
O4i—Zn2—O2 | 80.99 (12) | N2—C14—H14A | 117.6 |
O1ii—Zn2—O2 | 92.30 (11) | C15—C14—H14A | 117.6 |
O1—Zn2—O2 | 78.31 (11) | C20—C15—C16 | 119.2 (4) |
O3i—Zn2—O2 | 152.81 (11) | C20—C15—C14 | 125.7 (4) |
C2—O1—Zn2i | 124.8 (2) | C16—C15—C14 | 114.8 (4) |
C2—O1—Zn2 | 111.7 (2) | C17—C16—C15 | 121.7 (4) |
Zn2i—O1—Zn2 | 122.36 (15) | C17—C16—H16A | 119.1 |
C1—O2—Zn1 | 126.4 (3) | C15—C16—H16A | 119.1 |
C1—O2—Zn2 | 106.8 (2) | C16—C17—C18 | 120.0 (4) |
Zn1—O2—Zn2 | 122.72 (14) | C16—C17—H17A | 120.0 |
C20—O3—Zn1 | 125.4 (3) | C18—C17—H17A | 120.0 |
C20—O3—Zn2ii | 111.3 (2) | C19—C18—C17 | 120.4 (4) |
Zn1—O3—Zn2ii | 123.20 (13) | C19—C18—H18A | 119.8 |
C19—O4—Zn2ii | 117.4 (3) | C17—C18—H18A | 119.8 |
C7—N1—C8 | 120.9 (4) | O4—C19—C18 | 122.7 (4) |
C7—N1—Zn1 | 124.9 (3) | O4—C19—C20 | 116.2 (4) |
C8—N1—Zn1 | 113.6 (3) | C18—C19—C20 | 121.1 (4) |
C14—N2—C13 | 121.7 (4) | O3—C20—C15 | 126.4 (4) |
C14—N2—Zn1 | 125.6 (3) | O3—C20—C19 | 115.9 (4) |
C13—N2—Zn1 | 112.3 (3) | C15—C20—C19 | 117.7 (4) |
O2—C1—C6 | 125.2 (4) | O5—S1—C21 | 107.4 (3) |
O2—C1—C2 | 116.8 (4) | O5—S1—C22 | 105.0 (2) |
C6—C1—C2 | 117.9 (4) | C21—S1—C22 | 96.9 (3) |
O1—C2—C3 | 122.7 (4) | S1—C21—H21A | 109.5 |
O1—C2—C1 | 117.5 (3) | S1—C21—H21B | 109.5 |
C3—C2—C1 | 119.8 (4) | H21A—C21—H21B | 109.5 |
C2—C3—C4 | 121.3 (4) | S1—C21—H21C | 109.5 |
C2—C3—H3A | 119.4 | H21A—C21—H21C | 109.5 |
C4—C3—H3A | 119.4 | H21B—C21—H21C | 109.5 |
C5—C4—C3 | 119.3 (4) | S1—C22—H22A | 109.5 |
C5—C4—H4A | 120.3 | S1—C22—H22B | 109.5 |
C3—C4—H4A | 120.3 | H22A—C22—H22B | 109.5 |
C4—C5—C6 | 121.7 (4) | S1—C22—H22C | 109.5 |
C4—C5—H5A | 119.2 | H22A—C22—H22C | 109.5 |
C6—C5—H5A | 119.2 | H22B—C22—H22C | 109.5 |
C5—C6—C1 | 119.7 (4) | Zn1—O1W—H1W1 | 87 (4) |
C5—C6—C7 | 115.7 (4) | Zn1—O1W—H2W1 | 114 (4) |
C1—C6—C7 | 124.5 (4) | H1W1—O1W—H2W1 | 109 (3) |
N1—C7—C6 | 126.3 (4) | ||
O4i—Zn2—O1—C2 | −44.4 (3) | C6—C1—C2—C3 | −5.4 (6) |
O1ii—Zn2—O1—C2 | 112.0 (3) | O1—C2—C3—C4 | −177.4 (4) |
O3i—Zn2—O1—C2 | −128.4 (2) | C1—C2—C3—C4 | 0.9 (6) |
O2—Zn2—O1—C2 | 23.9 (2) | C2—C3—C4—C5 | 3.0 (7) |
O4i—Zn2—O1—Zn2i | 147.45 (15) | C3—C4—C5—C6 | −2.3 (7) |
O1ii—Zn2—O1—Zn2i | −56.06 (14) | C4—C5—C6—C1 | −2.4 (7) |
O3i—Zn2—O1—Zn2i | 63.54 (17) | C4—C5—C6—C7 | 174.0 (4) |
O2—Zn2—O1—Zn2i | −144.18 (17) | O2—C1—C6—C5 | −177.2 (4) |
O3—Zn1—O2—C1 | 130.5 (3) | C2—C1—C6—C5 | 6.2 (6) |
O1W—Zn1—O2—C1 | −120.3 (3) | O2—C1—C6—C7 | 6.7 (7) |
N1—Zn1—O2—C1 | −12.6 (3) | C2—C1—C6—C7 | −169.9 (4) |
N2—Zn1—O2—C1 | 33.0 (6) | C8—N1—C7—C6 | 176.2 (4) |
O3—Zn1—O2—Zn2 | −75.11 (16) | Zn1—N1—C7—C6 | −13.8 (6) |
O1W—Zn1—O2—Zn2 | 34.05 (18) | C5—C6—C7—N1 | −177.3 (4) |
N1—Zn1—O2—Zn2 | 141.76 (17) | C1—C6—C7—N1 | −1.1 (7) |
N2—Zn1—O2—Zn2 | −172.6 (3) | C7—N1—C8—C9 | −28.3 (7) |
O4i—Zn2—O2—C1 | 107.0 (3) | Zn1—N1—C8—C9 | 160.6 (4) |
O1ii—Zn2—O2—C1 | −135.8 (2) | C7—N1—C8—C13 | 154.6 (4) |
O1—Zn2—O2—C1 | −25.5 (2) | Zn1—N1—C8—C13 | −16.5 (5) |
O3i—Zn2—O2—C1 | 65.3 (3) | C13—C8—C9—C10 | −1.9 (7) |
O4i—Zn2—O2—Zn1 | −51.73 (17) | N1—C8—C9—C10 | −179.0 (4) |
O1ii—Zn2—O2—Zn1 | 65.53 (16) | C8—C9—C10—C11 | 1.6 (8) |
O1—Zn2—O2—Zn1 | 175.75 (18) | C9—C10—C11—C12 | 0.2 (8) |
O3i—Zn2—O2—Zn1 | −93.4 (3) | C10—C11—C12—C13 | −1.8 (7) |
O1W—Zn1—O3—C20 | 87.5 (3) | C11—C12—C13—C8 | 1.5 (7) |
O2—Zn1—O3—C20 | −170.2 (3) | C11—C12—C13—N2 | −177.0 (4) |
N1—Zn1—O3—C20 | −78.4 (4) | C9—C8—C13—C12 | 0.4 (7) |
N2—Zn1—O3—C20 | −8.4 (3) | N1—C8—C13—C12 | 177.7 (4) |
O1W—Zn1—O3—Zn2ii | −95.24 (18) | C9—C8—C13—N2 | 179.0 (4) |
O2—Zn1—O3—Zn2ii | 7.07 (17) | N1—C8—C13—N2 | −3.7 (6) |
N1—Zn1—O3—Zn2ii | 98.8 (2) | C14—N2—C13—C12 | 26.1 (7) |
N2—Zn1—O3—Zn2ii | 168.82 (18) | Zn1—N2—C13—C12 | −159.8 (4) |
O3—Zn1—N1—C7 | −74.8 (4) | C14—N2—C13—C8 | −152.4 (4) |
O1W—Zn1—N1—C7 | 119.1 (3) | Zn1—N2—C13—C8 | 21.7 (5) |
O2—Zn1—N1—C7 | 17.3 (4) | C13—N2—C14—C15 | 174.5 (4) |
N2—Zn1—N1—C7 | −149.3 (4) | Zn1—N2—C14—C15 | 1.3 (7) |
O3—Zn1—N1—C8 | 95.8 (3) | N2—C14—C15—C20 | −9.3 (8) |
O1W—Zn1—N1—C8 | −70.2 (3) | N2—C14—C15—C16 | 177.2 (4) |
O2—Zn1—N1—C8 | −172.0 (3) | C20—C15—C16—C17 | 0.7 (7) |
N2—Zn1—N1—C8 | 21.4 (3) | C14—C15—C16—C17 | 174.7 (4) |
O3—Zn1—N2—C14 | 5.9 (4) | C15—C16—C17—C18 | −1.4 (7) |
O1W—Zn1—N2—C14 | −102.8 (4) | C16—C17—C18—C19 | 0.6 (7) |
O2—Zn1—N2—C14 | 103.4 (5) | Zn2ii—O4—C19—C18 | 174.6 (3) |
N1—Zn1—N2—C14 | 150.6 (4) | Zn2ii—O4—C19—C20 | −5.1 (5) |
O3—Zn1—N2—C13 | −167.9 (3) | C17—C18—C19—O4 | −178.9 (4) |
O1W—Zn1—N2—C13 | 83.4 (3) | C17—C18—C19—C20 | 0.9 (7) |
O2—Zn1—N2—C13 | −70.4 (5) | Zn1—O3—C20—C15 | 4.3 (6) |
N1—Zn1—N2—C13 | −23.2 (3) | Zn2ii—O3—C20—C15 | −173.3 (3) |
Zn1—O2—C1—C6 | 3.8 (6) | Zn1—O3—C20—C19 | −176.8 (3) |
Zn2—O2—C1—C6 | −153.8 (3) | Zn2ii—O3—C20—C19 | 5.7 (4) |
Zn1—O2—C1—C2 | −179.5 (3) | C16—C15—C20—O3 | 179.7 (4) |
Zn2—O2—C1—C2 | 22.8 (4) | C14—C15—C20—O3 | 6.4 (7) |
Zn2i—O1—C2—C3 | −33.8 (5) | C16—C15—C20—C19 | 0.7 (6) |
Zn2—O1—C2—C3 | 158.5 (3) | C14—C15—C20—C19 | −172.5 (4) |
Zn2i—O1—C2—C1 | 147.9 (3) | O4—C19—C20—O3 | −0.8 (6) |
Zn2—O1—C2—C1 | −19.8 (4) | C18—C19—C20—O3 | 179.4 (4) |
O2—C1—C2—O1 | −4.0 (5) | O4—C19—C20—C15 | 178.2 (4) |
C6—C1—C2—O1 | 173.0 (3) | C18—C19—C20—C15 | −1.5 (6) |
O2—C1—C2—C3 | 177.7 (4) |
Symmetry codes: (i) y, −x+1/2, −z+1/2; (ii) −y+1/2, x, −z+1/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1W—H1W1···O4i | 0.84 (4) | 1.72 (4) | 2.535 (4) | 164 (5) |
O2W—H1W2···O5 | 0.85 (8) | 2.28 (9) | 3.032 (4) | 147 (4) |
O1W—H2W1···O5 | 0.83 (4) | 1.95 (4) | 2.772 (5) | 174 (4) |
C3—H3A···O3iii | 0.93 | 2.57 | 3.271 (5) | 132 |
C21—H21C···O4iv | 0.96 | 2.52 | 3.454 (7) | 165 |
C21—H21B···Cg1v | 0.96 | 2.81 | 3.475 (6) | 127 |
Symmetry codes: (i) y, −x+1/2, −z+1/2; (iii) −x+1/2, −y+1/2, z; (iv) −y+1, x+1/2, z−1/2; (v) −x+1, −y+1, −z. |
Experimental details
Crystal data | |
Chemical formula | [Zn8(C20H12N2O4)4(H2O)4]·4C2H6OS·2H2O |
Mr | 2321.03 |
Crystal system, space group | Tetragonal, P42/n |
Temperature (K) | 100 |
a, c (Å) | 18.1324 (3), 13.3813 (3) |
V (Å3) | 4399.56 (14) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 2.32 |
Crystal size (mm) | 0.57 × 0.13 × 0.10 |
Data collection | |
Diffractometer | Bruker SMART APEXII CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2005) |
Tmin, Tmax | 0.352, 0.796 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 26700, 5851, 3700 |
Rint | 0.085 |
(sin θ/λ)max (Å−1) | 0.682 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.050, 0.138, 1.02 |
No. of reflections | 5851 |
No. of parameters | 314 |
No. of restraints | 6 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.67, −1.34 |
Computer programs: APEX2 (Bruker, 2005), SAINT (Bruker, 2005), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2003).
D—H···A | D—H | H···A | D···A | D—H···A |
O1W—H1W1···O4i | 0.84 (4) | 1.72 (4) | 2.535 (4) | 164 (5) |
O2W—H1W2···O5 | 0.85 (8) | 2.28 (9) | 3.032 (4) | 147 (4) |
O1W—H2W1···O5 | 0.83 (4) | 1.95 (4) | 2.772 (5) | 174 (4) |
C3—H3A···O3ii | 0.93 | 2.57 | 3.271 (5) | 132 |
C21—H21C···O4iii | 0.96 | 2.52 | 3.454 (7) | 165 |
C21—H21B···Cg1iv | 0.96 | 2.81 | 3.475 (6) | 127 |
Symmetry codes: (i) y, −x+1/2, −z+1/2; (ii) −x+1/2, −y+1/2, z; (iii) −y+1, x+1/2, z−1/2; (iv) −x+1, −y+1, −z. |
Acknowledgements
The authors thank the Malaysian Government, the Ministry of Science, Technology and Innovation, Malaysia (MOSTI) and Universiti Sains Malaysia for the E-Science Fund research grant (PKIMIA/613308) and facilities. The International University of Africa (Sudan) is acknowledged for providing study leave to NEE. SC thanks Prince of Songkla University for generous support. The authors also thank Universiti Sains Malaysia for the Research University Golden Goose Grant No. 1001/PFIZIK/811012.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
There has been considerable interest in the synthesis of metal Schiff base complexes due to their coordination chemistry and applications (Basak et al., 2007; Eltayeb et al., 2007a,b,c; Pal et al., 2005; Tarafder et al., 2002). Zinc complexes with Schiff bases are important in biological systems and coordination chemistry (Collinson & Fenton, 1996; Tarafder et al., 2002). Previously, we have reported crystal structures of ZnII complexes with Schiff base ligands (Eltayeb et al., 2007a,b,c). As a continuation of our research on Schiff base complexes, we report here the crystal structure of the title octanuclear ZnII complex.
The asymmetric unit of the title compound (Fig. 1) contains one quarter of the Zn8(C80H56N8O20) complex, one dimethyl sulfoxide (C2H6OS) and one-half of a water molecule with its O atom lying on a twofold rotation axis. The other three quarters of the octanuclear complex molecule are generated by the fourfold axis. The ZnII atoms of the octanuclear complex has two different five-coordination environments viz. ZnN2O3 and ZnO5 (Fig. 2). All eight ZnII centers adopt a distorted square-pyramidal coordination in which four ZnII ions (outer) (Zn1 and its three symmetry equivalents Zn1A, Zn1B and Zn1C) coordinate with the N2O2 tetradentate Schiff base ligand bounded in a basal plane and the coordinated water molecule occupying the apical site. The other four ZnII ions (inner) (Zn2 and its three symmetry equivalents Zn2A, Zn2B and Zn2C) are coordinated with five O atoms from three Schiff base ligands (see Fig. 2). The ZnII ions in each unit are connected by one µ-O (Zn1—O2—Zn2) atom (Fig. 1). The Zn—µ-O bond lengths are Zn1—O2 = 2.032 (3) and Zn2—O2 = 2.191 (3) Å. In the octanuclear cluster, the µ-O1 atoms are also in bridging positions, between the ZnII ions (inner cavity) (Zn2—O1—Zn2B) with the Zn—µ-O distances of Zn2—O1 = 2.000 (3) Å and Zn2B—O1 = 1.981 (3) Å. The connections of the four inner ZnII ions by bridging µ-O1 and its equivalents result in the formation of an eight membered ring (Zn2—O1—Zn2B—O1B—Zn2C—O1C—Zn2A—O1A), with the Zn···Zn contacts being 3.4878 (5) Å. The Schiff base ligand in the present complex is in an umbrella conformation with the dihedral angle between the two outer rings (C1—C6 and C15—C20) being 48.1 (2) °. In the octanuclear complex (Fig. 2), the four Schiff bases have their concave sides alternating up and down. The coordination geometry of the five-coordinate atoms Zn1 and Zn2 (and their equivalents) can be viewed as that of a slightly distorted square antiprism. Bond lengths and angles observed in the structure are in normal ranges (Allen et al., 1987) and comparable with the related structures (Eltayeb et al., 2007a,b,c).
In the crystal packing (Fig. 3), the ZnII complex molecules, coordinated and free water molecules and dimethyl sulfoxide molecules are linked via O—H···O and C—H···O hydrogen bonds and C—H···π interactions involving the C1—C6 (centroid Cg1) ring (Table 1) forming a three-dimensional framework.