organic compounds
Trimesic acid dimethyl sulfoxide solvate:
revisionaDEP Facultad de Ciencias Químicas, UANL, Guerrero y Progreso S/N, Col. Treviño, 64570 Monterrey, NL, Mexico, and bLaboratorio de Síntesis de Complejos, Facultad de Ciencias Químicas, Universidad Autónoma de Puebla, AP 1067, 72001 Puebla, Pue., Mexico
*Correspondence e-mail: sylvain_bernes@Hotmail.com
The structure of the title solvate, C9H6O6·C2H6OS, was determined 30 years ago [Herbstein, Kapon & Wasserman (1978). Acta Cryst. B34, 1613–1617], with data collected at room temperature, and refined in the P21. The present redetermination, based on high-resolution diffraction data, shows that the actual is more likely to be P21/m. The contains layers of trimesic acid molecules lying on mirror planes. A mirror plane also passes through the S and O atoms of the solvent molecule. The molecules in each layer are interconnected through strong O—H⋯O hydrogen bonds, forming a two-dimensional supramolecular network within each layer. The donor groups are the hydroxyls of the trimesic acid molecules, while the acceptors are the carbonyl or the sulfoxide O atoms.
Related literature
For the first report on the title solvate structure, see: Herbstein et al. (1978). For the use of trimesic acid as a building block for supramolecular networks, see: Almeida Paz & Klinowski (2004). For a description of hydrogen bonds, see: Desiraju & Steiner (1999).
Experimental
Crystal data
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Refinement
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Data collection: XSCANS (Siemens, 1996); cell XSCANS; data reduction: XSCANS; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: Mercury (Macrae et al., 2006); software used to prepare material for publication: SHELXL97.
Supporting information
10.1107/S1600536808018655/fb2098sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536808018655/fb2098Isup2.hkl
Copper (0.1 g, 1.5 mmol), TMA (0.32 g, 1.5 mmol), and DMSO (3.3 g, 42.2 mmol) were placed in a flask and the mixture was heated at 338 K with magnetic stirring until total dissolution of the metal was observed (0.5–2 hours). The solution was filtered and allowed to stand at room temperature for 12 hours, after which the crystals of the title compound were formed.
Hydroxyl H atoms were found in a difference map, and refined freely. Other H atoms were placed in idealized positions, with C—H bond lengths fixed to 0.93 (aromatic CH) or 0.96 Å (methyl CH3) and refined using a riding model approximation, with Uiso(H) = 1.5Ueq(carrier C) for the methyl group and Uiso(H) = 1.2Ueq(carrier C) for the
The methyl group is considered as a rigid group free to rotate about the S1—C10 bond.Data collection: XSCANS (Siemens, 1996); cell
XSCANS (Siemens, 1996); data reduction: XSCANS (Siemens, 1996); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: Mercury (Macrae et al., 2006); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).C9H6O6·C2H6OS | F(000) = 300 |
Mr = 288.27 | Dx = 1.504 Mg m−3 |
Monoclinic, P21/m | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yb | Cell parameters from 45 reflections |
a = 8.7444 (7) Å | θ = 4.7–13.8° |
b = 6.8365 (7) Å | µ = 0.28 mm−1 |
c = 10.7113 (8) Å | T = 298 K |
β = 96.195 (5)° | Prism, colourless |
V = 636.59 (10) Å3 | 0.60 × 0.48 × 0.36 mm |
Z = 2 |
Siemens P4 diffractometer | 1772 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.015 |
Graphite monochromator | θmax = 30.0°, θmin = 1.9° |
2θ/ω scans | h = −12→12 |
Absorption correction: ψ scan (XSCANS; Siemens, 1996) | k = −9→1 |
Tmin = 0.851, Tmax = 0.904 | l = −15→15 |
4582 measured reflections | 3 standard reflections every 97 reflections |
2007 independent reflections | intensity decay: <1% |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.037 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.112 | w = 1/[σ2(Fo2) + (0.0632P)2 + 0.1017P] where P = (Fo2 + 2Fc2)/3 |
S = 1.07 | (Δ/σ)max < 0.001 |
2007 reflections | Δρmax = 0.38 e Å−3 |
123 parameters | Δρmin = −0.30 e Å−3 |
0 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
20 constraints | Extinction coefficient: 0.040 (9) |
Primary atom site location: structure-invariant direct methods |
C9H6O6·C2H6OS | V = 636.59 (10) Å3 |
Mr = 288.27 | Z = 2 |
Monoclinic, P21/m | Mo Kα radiation |
a = 8.7444 (7) Å | µ = 0.28 mm−1 |
b = 6.8365 (7) Å | T = 298 K |
c = 10.7113 (8) Å | 0.60 × 0.48 × 0.36 mm |
β = 96.195 (5)° |
Siemens P4 diffractometer | 1772 reflections with I > 2σ(I) |
Absorption correction: ψ scan (XSCANS; Siemens, 1996) | Rint = 0.015 |
Tmin = 0.851, Tmax = 0.904 | 3 standard reflections every 97 reflections |
4582 measured reflections | intensity decay: <1% |
2007 independent reflections |
R[F2 > 2σ(F2)] = 0.037 | 0 restraints |
wR(F2) = 0.112 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.07 | Δρmax = 0.38 e Å−3 |
2007 reflections | Δρmin = −0.30 e Å−3 |
123 parameters |
x | y | z | Uiso*/Ueq | ||
C1 | 0.60335 (14) | 0.2500 | 0.50040 (13) | 0.0315 (3) | |
C2 | 0.65053 (16) | 0.2500 | 0.38033 (13) | 0.0356 (3) | |
H2A | 0.5773 | 0.2500 | 0.3106 | 0.043* | |
C3 | 0.80576 (16) | 0.2500 | 0.36384 (12) | 0.0355 (3) | |
C4 | 0.91692 (16) | 0.2500 | 0.46759 (13) | 0.0361 (3) | |
H4A | 1.0210 | 0.2500 | 0.4567 | 0.043* | |
C5 | 0.86956 (15) | 0.2500 | 0.58847 (12) | 0.0333 (3) | |
C6 | 0.71358 (15) | 0.2500 | 0.60405 (13) | 0.0325 (3) | |
H6A | 0.6829 | 0.2500 | 0.6845 | 0.039* | |
C7 | 0.43539 (16) | 0.2500 | 0.51484 (15) | 0.0363 (3) | |
C8 | 0.84857 (18) | 0.2500 | 0.23234 (14) | 0.0428 (4) | |
C9 | 0.98606 (16) | 0.2500 | 0.70011 (13) | 0.0382 (4) | |
O1 | 0.40892 (13) | 0.2500 | 0.63458 (12) | 0.0512 (4) | |
H1 | 0.314 (4) | 0.2500 | 0.640 (3) | 0.079 (9)* | |
O2 | 0.33561 (13) | 0.2500 | 0.42797 (12) | 0.0527 (4) | |
O3 | 0.99843 (14) | 0.2500 | 0.22789 (12) | 0.0648 (5) | |
H3 | 1.018 (4) | 0.2500 | 0.152 (4) | 0.105 (12)* | |
O4 | 0.75495 (16) | 0.2500 | 0.14056 (11) | 0.0610 (4) | |
O5 | 0.92574 (13) | 0.2500 | 0.80719 (10) | 0.0548 (4) | |
H5 | 0.998 (3) | 0.2500 | 0.868 (3) | 0.063 (7)* | |
O6 | 1.12357 (13) | 0.2500 | 0.69470 (12) | 0.0600 (4) | |
S1 | 0.28919 (4) | 0.2500 | 0.01135 (3) | 0.04770 (18) | |
C10 | 0.35278 (17) | 0.0539 (3) | 0.11302 (15) | 0.0600 (4) | |
H10A | 0.4632 | 0.0522 | 0.1249 | 0.090* | |
H10B | 0.3158 | −0.0677 | 0.0764 | 0.090* | |
H10C | 0.3137 | 0.0713 | 0.1927 | 0.090* | |
O7 | 0.11484 (13) | 0.2500 | 0.00856 (11) | 0.0620 (5) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0208 (5) | 0.0452 (7) | 0.0285 (6) | 0.000 | 0.0028 (4) | 0.000 |
C2 | 0.0258 (6) | 0.0547 (9) | 0.0257 (6) | 0.000 | 0.0002 (5) | 0.000 |
C3 | 0.0276 (6) | 0.0578 (9) | 0.0212 (6) | 0.000 | 0.0037 (4) | 0.000 |
C4 | 0.0239 (6) | 0.0595 (9) | 0.0251 (6) | 0.000 | 0.0043 (5) | 0.000 |
C5 | 0.0229 (5) | 0.0545 (8) | 0.0226 (5) | 0.000 | 0.0023 (4) | 0.000 |
C6 | 0.0236 (6) | 0.0498 (8) | 0.0246 (6) | 0.000 | 0.0045 (4) | 0.000 |
C7 | 0.0227 (6) | 0.0491 (8) | 0.0371 (7) | 0.000 | 0.0032 (5) | 0.000 |
C8 | 0.0327 (7) | 0.0727 (11) | 0.0236 (6) | 0.000 | 0.0052 (5) | 0.000 |
C9 | 0.0233 (6) | 0.0678 (10) | 0.0234 (6) | 0.000 | 0.0025 (4) | 0.000 |
O1 | 0.0227 (5) | 0.0914 (10) | 0.0407 (6) | 0.000 | 0.0092 (4) | 0.000 |
O2 | 0.0261 (5) | 0.0874 (10) | 0.0433 (7) | 0.000 | −0.0024 (4) | 0.000 |
O3 | 0.0320 (6) | 0.1391 (16) | 0.0244 (5) | 0.000 | 0.0083 (4) | 0.000 |
O4 | 0.0401 (6) | 0.1171 (13) | 0.0247 (5) | 0.000 | −0.0012 (4) | 0.000 |
O5 | 0.0266 (5) | 0.1159 (12) | 0.0218 (5) | 0.000 | 0.0026 (4) | 0.000 |
O6 | 0.0216 (5) | 0.1258 (13) | 0.0330 (6) | 0.000 | 0.0042 (4) | 0.000 |
S1 | 0.0287 (2) | 0.0895 (4) | 0.0254 (2) | 0.000 | 0.00491 (13) | 0.000 |
C10 | 0.0550 (8) | 0.0642 (9) | 0.0587 (8) | −0.0010 (7) | −0.0031 (6) | −0.0050 (7) |
O7 | 0.0275 (5) | 0.1342 (15) | 0.0238 (5) | 0.000 | 0.0010 (4) | 0.000 |
C1—C6 | 1.3895 (18) | C8—O4 | 1.2095 (19) |
C1—C2 | 1.3925 (19) | C8—O3 | 1.3165 (19) |
C1—C7 | 1.4933 (18) | C9—O6 | 1.2101 (17) |
C2—C3 | 1.3876 (19) | C9—O5 | 1.3131 (17) |
C2—H2A | 0.9300 | O1—H1 | 0.84 (3) |
C3—C4 | 1.3952 (19) | O3—H3 | 0.85 (4) |
C3—C8 | 1.496 (2) | O5—H5 | 0.86 (3) |
C4—C5 | 1.4014 (18) | S1—O7 | 1.5217 (12) |
C4—H4A | 0.9300 | S1—C10i | 1.7781 (17) |
C5—C6 | 1.3918 (18) | S1—C10 | 1.7781 (17) |
C5—C9 | 1.4849 (19) | C10—H10A | 0.9600 |
C6—H6A | 0.9300 | C10—H10B | 0.9600 |
C7—O2 | 1.2049 (19) | C10—H10C | 0.9600 |
C7—O1 | 1.3277 (19) | ||
C6—C1—C2 | 119.26 (12) | O1—C7—C1 | 112.08 (12) |
C6—C1—C7 | 121.50 (12) | O4—C8—O3 | 124.03 (14) |
C2—C1—C7 | 119.24 (12) | O4—C8—C3 | 123.31 (15) |
C3—C2—C1 | 120.60 (12) | O3—C8—C3 | 112.66 (13) |
C3—C2—H2A | 119.7 | O6—C9—O5 | 122.46 (13) |
C1—C2—H2A | 119.7 | O6—C9—C5 | 124.08 (13) |
C2—C3—C4 | 120.37 (12) | O5—C9—C5 | 113.46 (12) |
C2—C3—C8 | 117.87 (12) | C7—O1—H1 | 110 (2) |
C4—C3—C8 | 121.76 (13) | C8—O3—H3 | 110 (2) |
C3—C4—C5 | 119.08 (12) | C9—O5—H5 | 109.3 (19) |
C3—C4—H4A | 120.5 | O7—S1—C10i | 104.98 (6) |
C5—C4—H4A | 120.5 | O7—S1—C10 | 104.98 (6) |
C6—C5—C4 | 120.13 (12) | C10i—S1—C10 | 97.87 (11) |
C6—C5—C9 | 119.97 (12) | S1—C10—H10A | 109.5 |
C4—C5—C9 | 119.91 (12) | S1—C10—H10B | 109.5 |
C1—C6—C5 | 120.56 (12) | H10A—C10—H10B | 109.5 |
C1—C6—H6A | 119.7 | S1—C10—H10C | 109.5 |
C5—C6—H6A | 119.7 | H10A—C10—H10C | 109.5 |
O2—C7—O1 | 123.97 (14) | H10B—C10—H10C | 109.5 |
O2—C7—C1 | 123.94 (14) | ||
C6—C1—C2—C3 | 0.0 | C6—C1—C7—O2 | 180.0 |
C7—C1—C2—C3 | 180.0 | C2—C1—C7—O2 | 0.0 |
C1—C2—C3—C4 | 0.0 | C6—C1—C7—O1 | 0.0 |
C1—C2—C3—C8 | 180.0 | C2—C1—C7—O1 | 180.0 |
C2—C3—C4—C5 | 0.0 | C2—C3—C8—O4 | 0.0 |
C8—C3—C4—C5 | 180.0 | C4—C3—C8—O4 | 180.0 |
C3—C4—C5—C6 | 0.0 | C2—C3—C8—O3 | 180.0 |
C3—C4—C5—C9 | 180.0 | C4—C3—C8—O3 | 0.0 |
C2—C1—C6—C5 | 0.0 | C6—C5—C9—O6 | 180.0 |
C7—C1—C6—C5 | 180.0 | C4—C5—C9—O6 | 0.0 |
C4—C5—C6—C1 | 0.0 | C6—C5—C9—O5 | 0.0 |
C9—C5—C6—C1 | 180.0 | C4—C5—C9—O5 | 180.0 |
Symmetry code: (i) x, −y+1/2, z. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1···O6ii | 0.84 (3) | 1.82 (3) | 2.6435 (16) | 165 (3) |
O3—H3···O7iii | 0.85 (4) | 1.83 (4) | 2.6593 (17) | 164 (4) |
O5—H5···O7iv | 0.86 (3) | 1.73 (3) | 2.5723 (16) | 169 (3) |
Symmetry codes: (ii) x−1, y, z; (iii) x+1, y, z; (iv) x+1, y, z+1. |
Experimental details
Crystal data | |
Chemical formula | C9H6O6·C2H6OS |
Mr | 288.27 |
Crystal system, space group | Monoclinic, P21/m |
Temperature (K) | 298 |
a, b, c (Å) | 8.7444 (7), 6.8365 (7), 10.7113 (8) |
β (°) | 96.195 (5) |
V (Å3) | 636.59 (10) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.28 |
Crystal size (mm) | 0.60 × 0.48 × 0.36 |
Data collection | |
Diffractometer | Siemens P4 diffractometer |
Absorption correction | ψ scan (XSCANS; Siemens, 1996) |
Tmin, Tmax | 0.851, 0.904 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 4582, 2007, 1772 |
Rint | 0.015 |
(sin θ/λ)max (Å−1) | 0.703 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.037, 0.112, 1.07 |
No. of reflections | 2007 |
No. of parameters | 123 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.38, −0.30 |
Computer programs: XSCANS (Siemens, 1996), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), Mercury (Macrae et al., 2006).
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1···O6i | 0.84 (3) | 1.82 (3) | 2.6435 (16) | 165 (3) |
O3—H3···O7ii | 0.85 (4) | 1.83 (4) | 2.6593 (17) | 164 (4) |
O5—H5···O7iii | 0.86 (3) | 1.73 (3) | 2.5723 (16) | 169 (3) |
Symmetry codes: (i) x−1, y, z; (ii) x+1, y, z; (iii) x+1, y, z+1. |
Acknowledgements
Partial support from VIEP-BUAP (14/G/NAT/05) is acknowledged. SB thanks BUAP for diffractometer time.
References
Almeida Paz, F. A. & Klinowski, J. (2004). Inorg. Chem. 43, 3882–3893. Web of Science CSD CrossRef PubMed Google Scholar
Desiraju, G. R. & Steiner, T. (1999). The Weak Hydrogen Bond In Structural Chemistry and Biology, p. 13. International Union of Crystallography Monographs on Crystallography. Oxford University Press. Google Scholar
Herbstein, F. H., Kapon, M. & Wasserman, S. (1978). Acta Cryst. B34, 1613–1617. CSD CrossRef CAS IUCr Journals Web of Science Google Scholar
Macrae, C. F., Edgington, P. R., McCabe, P., Pidcock, E., Shields, G. P., Taylor, R., Towler, M. & van de Streek, J. (2006). J. Appl. Cryst. 39, 453–457. Web of Science CrossRef CAS IUCr Journals Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Siemens (1996). XSCANS. Siemens Analytical X-ray Instruments Inc., Madison, Wisconsin, USA. Google Scholar
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The title compound was obtained during attempts to prepare coordination compounds with transition metals and benzene-1,3,5-tricarboxylic acid. The latter compound is also known as trimesic acid, TMA. It is a rigid, planar molecule that is soluble in a number of solvents. Its three exo-carboxylic acid groups are arranged symmetrically around the benzene ring, forming a flat, trigonal molecule, which can be used as a building block in the construction of organic crystals and multidimensional metalorganic frameworks (e.g. Almeida Paz & Klinowski, 2004).
The clathration ability of TMA allowed to prepare a number of solvate structures, including hydrates, and consequently determination of these structures. Among them, the dimethylsulfoxide (DMSO) solvate has been reported already 30 years ago (Herbstein et al., 1978). The data were collected at room temperature with Mo-Kα radiation. Laue symmetry as well as systematic extinctions are in agreement with the space group P21/m or P21. Herbstein et al. applied the Hamilton test, i.e. essentially based their choice on final R residuals. The space group P21 was eventually retained (R = 0.084) and P21/m rejected (R = 0.092), despite the E statistics, which favoured a centrosymmetric space group. The authors, however, commented in their publication that "there is some doubt about the correctness of this decision".
We have now collected an accurate high-resolution diffraction pattern for this compound. Wilson statistics are not in agreement with the non-centrosymmetric space group, for instance 〈E2-1〉 = 1.002 for 4589 E values. Refinement in space group P21 converges to R1 = 0.035 for 1772 Fo>4σ(Fo). However, abnormally high correlation matrix elements are observed for methyl groups in DMSO, and methyl H atoms, if refined freely, exhibit unrealistic C—H bond lengths, ranging from 0.68 Å to 1.48 Å. Finally, refinement using non-merged data (286 measured Friedel pairs) gives an inconsistent Flack parameter, 0.23 (13).
All these symptoms indicate that the space group should be rather P21/m. All the atoms with exception of the methyl group (C10) of the DMSO molecule lie in the mirror plane. The methyl group (C10) occupies a general position (Fig. 1). Expected geometry for both moieties is observed.
The displacement parameters deserve a careful examination. The longest axes of the displacement parameters are perpendicular to the molecular planes. In the case of the TMA molecule, the U3/U1 ratios of non-hydrogen atoms lie in the range 2.17–6.60. A similar thermal behaviour is observed for DMSO atoms lying in the m plane, S1 (U3/U1 = 3.69) and O7 (U3/U1 = 5.77). Such motions suggest another possibility that the crystal can contain statistically distributed non-centrosymmetric domains; i.e. the structure can be non-centrosymmetric on a shorter scale. Therefore, the space group P21 can not be totally ruled out, and the actual space group may also be dependent on the choice of the particular sample. Further work, like multi-temperatures data collections, would be desirable in order to determine the symmetry unambiguously.
On the other hand, the molecular motion within the molecular planes would be affected by stronger intermolecular interactions that take place within each molecular layer. The molecules are involved in a two-dimensional supramolecular network through the strong hydrogen bonds (Desiraju & Steiner, 1999; Tab. 1). All the hydroxyl groups of the TMA molecule form O—H···O hydrogen bonds using carbonyl and sulfoxide O atoms as acceptors. As a result, the molecular layers are formed in the crystal structure (Fig. 2), parallel to (010). These layers correspond to the crystallographic m planes, and are thus separated by b/2 = 3.42 Å.