organic compounds
Swietenolide monohydrate
aSchool of Chemical Sciences, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, bX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, and cCrystal Materials Research Unit, Department of Chemistry, Faculty of Science, Prince of Songkla University, Hat-Yai, Songkhla 90112, Thailand
*Correspondence e-mail: hkfun@usm.my
The title compound, a natural B,D-seco-limonoid, C27H34O8·H2O, and known as Swietenolide monohydrate, has been isolated from S. macrophylla King. In the molecular structure, the four fused six-membered rings adopt twist-boat (ring A), approximate chair (ring B), envelope (ring C) and half-chair (ring D) conformations. The attached furan ring is essentially planar. O—H⋯O hydrogen bonds and weak C—H⋯O interactions connect the molecules into a two-dimensional network parallel to the (100) plane. C—H⋯π interactions are also observed.
Related literature
For bond-length data, see: Allen et al. (1987). For ring conformations, see: Cremer & Pople (1975). For related structures, see, for example: Fowles et al. (2007); Solomon et al. (2003). For the bioactivities of Swietenolide, see, for example: Chan et al. (1976); Jean et al. (2000); Kipassa et al. (2008); Munoz et al. (2000); Soediro et al. (1990).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2005); cell APEX2; data reduction: SAINT (Bruker, 2005); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2003).
Supporting information
10.1107/S1600536808017431/is2302sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536808017431/is2302Isup2.hkl
Air-dried powdered leaves of S. macrophylla were extracted with n-hexane, CH2Cl2 and MeOH (5 L each) for five days respectively at room temperature. The solvents were evaporated under reduced pressure to afford n-hexane extract (12.8 g), CH2Cl2 extract (18.2 g) and MeOH extract (107.8 g). The n-hexane extract was subjected to
using silica gel with petroleum ether-ethyl acetate gradient to afford seven fractions (M1—M7). Fraction M7 (1.05 g) was further separated by preparative TLC with system n-hexane–ethyl acetate (5:1 v/v) to afford three sub-fractions (M7a—M7c). Fraction M7b was recrystallized from CHCl3 to yield white single crystals of the title compound (m.p. 494–495 K).Water H atoms are located in a difference map and the positional parameters were refined, with a distance restraint of O—H = 0.80 (1) Å, and with Uiso(H) = 1.5Ueq(O). The remaining H atoms were placed in calculated positions with d(O—H) = 0.82 Å, Uiso = 1.2Ueq(O), d(C—H) = 0.97–0.98 Å, Uiso = 1.2Ueq(C) for CH and aromatic, and d(C—H) = 0.96 Å, Uiso = 1.5Ueq(C) for CH3 atoms. As there is no large
for the determination of the a total of 3299 Friedel pairs were merged before final refinement.Data collection: APEX2 (Bruker, 2005); cell
APEX2 (Bruker, 2005); data reduction: SAINT (Bruker, 2005); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2003).Fig. 1. The asymmetric unit of (I), showing 50% probability displacement ellipsoids and the atomic numbering scheme. O—H···O hydrogen bond is drawn as dashed line. | |
Fig. 2. The crystal packing of the title compound viewed approximately along the a axis. Hydrogen bonds are drawn as dash lines. |
C27H34O8·H2O | F(000) = 540 |
Mr = 504.56 | Dx = 1.384 Mg m−3 |
Monoclinic, P21 | Melting point = 494–495 K |
Hall symbol: P 2yb | Mo Kα radiation, λ = 0.71073 Å |
a = 11.5897 (1) Å | Cell parameters from 3748 reflections |
b = 8.8972 (1) Å | θ = 1.7–30.0° |
c = 11.7397 (1) Å | µ = 0.10 mm−1 |
β = 90.571 (1)° | T = 100 K |
V = 1210.49 (2) Å3 | Block, white |
Z = 2 | 0.51 × 0.26 × 0.15 mm |
Bruker SMART APEX2 CCD area-detector diffractometer | 3748 independent reflections |
Radiation source: fine-focus sealed tube | 3473 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.035 |
Detector resolution: 8.33 pixels mm-1 | θmax = 30.0°, θmin = 1.7° |
ω scans | h = −16→16 |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | k = −12→12 |
Tmin = 0.949, Tmax = 0.985 | l = −16→16 |
29214 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.037 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.102 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.06 | w = 1/[σ2(Fo2) + (0.0598P)2 + 0.2523P] where P = (Fo2 + 2Fc2)/3 |
3748 reflections | (Δ/σ)max = 0.001 |
336 parameters | Δρmax = 0.60 e Å−3 |
3 restraints | Δρmin = −0.30 e Å−3 |
C27H34O8·H2O | V = 1210.49 (2) Å3 |
Mr = 504.56 | Z = 2 |
Monoclinic, P21 | Mo Kα radiation |
a = 11.5897 (1) Å | µ = 0.10 mm−1 |
b = 8.8972 (1) Å | T = 100 K |
c = 11.7397 (1) Å | 0.51 × 0.26 × 0.15 mm |
β = 90.571 (1)° |
Bruker SMART APEX2 CCD area-detector diffractometer | 3748 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | 3473 reflections with I > 2σ(I) |
Tmin = 0.949, Tmax = 0.985 | Rint = 0.035 |
29214 measured reflections |
R[F2 > 2σ(F2)] = 0.037 | 3 restraints |
wR(F2) = 0.102 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.06 | Δρmax = 0.60 e Å−3 |
3748 reflections | Δρmin = −0.30 e Å−3 |
336 parameters |
Experimental. The low-temparture data was collected with the Oxford Cyrosystem Cobra low-temperature attachment. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.14701 (12) | 0.92970 (17) | −0.07457 (11) | 0.0202 (3) | |
O2 | 0.15836 (12) | 0.51412 (17) | 0.17362 (12) | 0.0215 (3) | |
H2A | 0.1147 | 0.4506 | 0.1998 | 0.032* | |
O3 | 0.59393 (12) | 0.49859 (16) | 0.32385 (11) | 0.0178 (3) | |
O4 | 0.59920 (14) | 0.30211 (18) | 0.21195 (12) | 0.0249 (3) | |
O5 | 0.05304 (14) | 1.03697 (19) | 0.33979 (13) | 0.0281 (3) | |
H5A | 0.0630 | 1.1155 | 0.3046 | 0.042* | |
O6 | 0.09281 (15) | 0.89163 (19) | 0.52750 (12) | 0.0286 (3) | |
O7 | 0.23735 (14) | 0.75766 (18) | 0.45318 (12) | 0.0254 (3) | |
O8 | 0.63962 (14) | 0.8207 (2) | 0.61555 (13) | 0.0307 (4) | |
C1 | 0.09219 (16) | 0.6289 (2) | 0.11769 (16) | 0.0174 (3) | |
H1A | 0.0221 | 0.5819 | 0.0869 | 0.021* | |
C2 | 0.05482 (16) | 0.7551 (2) | 0.19977 (16) | 0.0176 (3) | |
C3 | 0.16498 (16) | 0.8467 (2) | 0.22950 (15) | 0.0157 (3) | |
H3A | 0.2238 | 0.7719 | 0.2495 | 0.019* | |
C4 | 0.21274 (15) | 0.9309 (2) | 0.12163 (15) | 0.0148 (3) | |
C5 | 0.16505 (15) | 0.8578 (2) | 0.01271 (16) | 0.0168 (3) | |
C6 | 0.16287 (16) | 0.6893 (2) | 0.01549 (16) | 0.0165 (3) | |
H6A | 0.1268 | 0.6532 | −0.0552 | 0.020* | |
C7 | 0.29236 (15) | 0.6434 (2) | 0.01551 (15) | 0.0160 (3) | |
H7A | 0.2981 | 0.5369 | 0.0322 | 0.019* | |
H7B | 0.3227 | 0.6592 | −0.0602 | 0.019* | |
C8 | 0.36654 (15) | 0.7287 (2) | 0.10020 (15) | 0.0153 (3) | |
C9 | 0.34658 (16) | 0.8973 (2) | 0.10259 (16) | 0.0162 (3) | |
H9A | 0.3632 | 0.9326 | 0.0254 | 0.019* | |
C10 | 0.43068 (17) | 0.9823 (2) | 0.18131 (17) | 0.0199 (4) | |
H10A | 0.4973 | 1.0128 | 0.1376 | 0.024* | |
H10B | 0.3932 | 1.0726 | 0.2086 | 0.024* | |
C11 | 0.47154 (16) | 0.8905 (2) | 0.28303 (16) | 0.0189 (4) | |
H11A | 0.4065 | 0.8699 | 0.3320 | 0.023* | |
H11B | 0.5275 | 0.9485 | 0.3265 | 0.023* | |
C12 | 0.52646 (15) | 0.7415 (2) | 0.24632 (15) | 0.0150 (3) | |
C13 | 0.44704 (16) | 0.6598 (2) | 0.16417 (15) | 0.0152 (3) | |
C14 | 0.46133 (16) | 0.4901 (2) | 0.15927 (15) | 0.0171 (3) | |
H14A | 0.3891 | 0.4444 | 0.1820 | 0.021* | |
H14B | 0.4744 | 0.4619 | 0.0806 | 0.021* | |
C15 | 0.55661 (17) | 0.4233 (2) | 0.23106 (16) | 0.0188 (4) | |
C16 | 0.53698 (15) | 0.6395 (2) | 0.35230 (15) | 0.0156 (3) | |
H16A | 0.4589 | 0.6161 | 0.3783 | 0.019* | |
C17 | 0.60331 (16) | 0.7034 (2) | 0.45044 (16) | 0.0173 (3) | |
C18 | 0.72511 (18) | 0.7205 (3) | 0.46494 (18) | 0.0241 (4) | |
H18A | 0.7817 | 0.6882 | 0.4150 | 0.029* | |
C19 | 0.74236 (19) | 0.7921 (3) | 0.56442 (19) | 0.0246 (4) | |
H19A | 0.8142 | 0.8184 | 0.5942 | 0.030* | |
C20 | 0.55640 (19) | 0.7630 (3) | 0.54466 (18) | 0.0284 (5) | |
H20A | 0.4778 | 0.7646 | 0.5596 | 0.034* | |
C21 | −0.04291 (17) | 0.8461 (3) | 0.14183 (18) | 0.0234 (4) | |
H21A | −0.1041 | 0.7793 | 0.1193 | 0.035* | |
H21B | −0.0134 | 0.8963 | 0.0759 | 0.035* | |
H21C | −0.0720 | 0.9192 | 0.1944 | 0.035* | |
C22 | 0.00204 (18) | 0.6826 (2) | 0.30642 (17) | 0.0227 (4) | |
H22A | −0.0592 | 0.6160 | 0.2839 | 0.034* | |
H22B | −0.0280 | 0.7598 | 0.3550 | 0.034* | |
H22C | 0.0605 | 0.6270 | 0.3468 | 0.034* | |
C23 | 0.15457 (18) | 0.9491 (2) | 0.33581 (15) | 0.0196 (4) | |
H23A | 0.2207 | 1.0177 | 0.3366 | 0.024* | |
C24 | 0.1553 (2) | 0.8629 (2) | 0.44867 (17) | 0.0238 (4) | |
C25 | 0.2369 (2) | 0.6683 (3) | 0.55726 (19) | 0.0297 (5) | |
H25A | 0.2941 | 0.5906 | 0.5523 | 0.045* | |
H25B | 0.1622 | 0.6236 | 0.5667 | 0.045* | |
H25C | 0.2541 | 0.7318 | 0.6213 | 0.045* | |
C26 | 0.19021 (17) | 1.0997 (2) | 0.11612 (16) | 0.0189 (4) | |
H26A | 0.1087 | 1.1175 | 0.1091 | 0.028* | |
H26B | 0.2287 | 1.1414 | 0.0513 | 0.028* | |
H26C | 0.2190 | 1.1465 | 0.1844 | 0.028* | |
C27 | 0.64551 (17) | 0.7674 (2) | 0.19245 (17) | 0.0207 (4) | |
H27A | 0.6370 | 0.8298 | 0.1262 | 0.031* | |
H27B | 0.6782 | 0.6725 | 0.1710 | 0.031* | |
H27C | 0.6956 | 0.8161 | 0.2466 | 0.031* | |
O1W | 0.01243 (14) | 0.81352 (19) | 0.74563 (13) | 0.0267 (3) | |
H1W1 | 0.058 (2) | 0.838 (4) | 0.798 (2) | 0.040* | |
H2W1 | 0.044 (2) | 0.825 (4) | 0.6819 (14) | 0.040* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0206 (6) | 0.0259 (7) | 0.0140 (6) | 0.0037 (6) | −0.0005 (5) | 0.0029 (5) |
O2 | 0.0224 (7) | 0.0211 (7) | 0.0212 (7) | 0.0004 (6) | 0.0047 (5) | 0.0050 (6) |
O3 | 0.0198 (6) | 0.0185 (6) | 0.0152 (6) | 0.0036 (5) | 0.0005 (5) | −0.0004 (5) |
O4 | 0.0310 (8) | 0.0233 (7) | 0.0205 (7) | 0.0089 (6) | −0.0003 (6) | −0.0039 (6) |
O5 | 0.0347 (9) | 0.0249 (8) | 0.0249 (7) | 0.0099 (7) | 0.0088 (6) | 0.0019 (6) |
O6 | 0.0422 (9) | 0.0274 (8) | 0.0161 (7) | 0.0006 (7) | 0.0064 (6) | −0.0004 (6) |
O7 | 0.0362 (8) | 0.0245 (7) | 0.0155 (6) | 0.0021 (7) | 0.0004 (6) | 0.0027 (6) |
O8 | 0.0296 (8) | 0.0385 (9) | 0.0238 (7) | 0.0001 (7) | −0.0045 (6) | −0.0118 (7) |
C1 | 0.0154 (8) | 0.0208 (9) | 0.0160 (8) | −0.0025 (7) | 0.0013 (6) | 0.0009 (7) |
C2 | 0.0150 (8) | 0.0217 (9) | 0.0162 (8) | −0.0008 (7) | 0.0025 (6) | 0.0003 (7) |
C3 | 0.0187 (8) | 0.0174 (8) | 0.0109 (7) | 0.0001 (6) | 0.0019 (6) | 0.0009 (6) |
C4 | 0.0157 (8) | 0.0172 (8) | 0.0115 (7) | 0.0016 (6) | 0.0018 (6) | 0.0005 (6) |
C5 | 0.0114 (7) | 0.0223 (9) | 0.0167 (8) | 0.0011 (7) | 0.0014 (6) | 0.0006 (7) |
C6 | 0.0151 (8) | 0.0214 (9) | 0.0130 (8) | −0.0011 (7) | −0.0002 (6) | −0.0002 (7) |
C7 | 0.0157 (8) | 0.0194 (8) | 0.0129 (7) | −0.0005 (7) | 0.0014 (6) | −0.0014 (6) |
C8 | 0.0138 (8) | 0.0175 (8) | 0.0145 (8) | −0.0005 (6) | 0.0028 (6) | −0.0004 (6) |
C9 | 0.0158 (8) | 0.0169 (8) | 0.0160 (8) | −0.0009 (6) | 0.0004 (6) | 0.0012 (6) |
C10 | 0.0183 (8) | 0.0161 (8) | 0.0252 (9) | −0.0013 (7) | −0.0041 (7) | 0.0018 (7) |
C11 | 0.0178 (8) | 0.0177 (9) | 0.0211 (9) | 0.0002 (7) | −0.0033 (7) | −0.0019 (7) |
C12 | 0.0130 (7) | 0.0167 (8) | 0.0154 (8) | −0.0001 (6) | 0.0001 (6) | 0.0007 (6) |
C13 | 0.0145 (8) | 0.0173 (8) | 0.0138 (8) | −0.0003 (6) | 0.0029 (6) | −0.0008 (6) |
C14 | 0.0193 (8) | 0.0180 (8) | 0.0141 (8) | 0.0024 (7) | 0.0015 (6) | −0.0005 (6) |
C15 | 0.0212 (9) | 0.0210 (9) | 0.0143 (8) | 0.0024 (7) | 0.0027 (6) | 0.0004 (7) |
C16 | 0.0146 (8) | 0.0182 (8) | 0.0141 (8) | 0.0011 (6) | 0.0014 (6) | −0.0007 (6) |
C17 | 0.0161 (8) | 0.0187 (8) | 0.0170 (8) | 0.0011 (7) | −0.0004 (6) | 0.0006 (7) |
C18 | 0.0179 (9) | 0.0307 (11) | 0.0237 (10) | 0.0016 (8) | −0.0014 (7) | 0.0001 (8) |
C19 | 0.0223 (10) | 0.0262 (10) | 0.0253 (10) | −0.0013 (8) | −0.0072 (8) | 0.0019 (8) |
C20 | 0.0219 (9) | 0.0410 (12) | 0.0223 (10) | 0.0003 (9) | 0.0001 (7) | −0.0116 (9) |
C21 | 0.0162 (8) | 0.0321 (11) | 0.0218 (9) | 0.0018 (8) | 0.0020 (7) | 0.0011 (8) |
C22 | 0.0249 (10) | 0.0241 (10) | 0.0193 (9) | −0.0040 (8) | 0.0062 (8) | 0.0008 (7) |
C23 | 0.0273 (10) | 0.0183 (8) | 0.0134 (8) | 0.0012 (7) | 0.0041 (7) | 0.0004 (7) |
C24 | 0.0360 (11) | 0.0195 (9) | 0.0158 (9) | −0.0037 (8) | 0.0003 (7) | −0.0007 (7) |
C25 | 0.0349 (12) | 0.0294 (11) | 0.0248 (10) | 0.0016 (9) | −0.0009 (9) | 0.0061 (9) |
C26 | 0.0221 (9) | 0.0189 (8) | 0.0156 (8) | 0.0026 (7) | 0.0019 (7) | 0.0025 (7) |
C27 | 0.0169 (8) | 0.0252 (9) | 0.0200 (9) | −0.0019 (7) | 0.0031 (7) | 0.0035 (8) |
O1W | 0.0309 (8) | 0.0285 (8) | 0.0209 (7) | −0.0014 (7) | 0.0036 (6) | −0.0020 (6) |
O1—C5 | 1.224 (2) | C11—C12 | 1.534 (3) |
O2—C1 | 1.432 (2) | C11—H11A | 0.9700 |
O2—H2A | 0.8200 | C11—H11B | 0.9700 |
O3—C15 | 1.346 (2) | C12—C13 | 1.513 (3) |
O3—C16 | 1.457 (2) | C12—C27 | 1.541 (3) |
O4—C15 | 1.208 (2) | C12—C16 | 1.544 (3) |
O5—C23 | 1.414 (2) | C13—C14 | 1.521 (3) |
O5—H5A | 0.8200 | C14—C15 | 1.504 (3) |
O6—C24 | 1.208 (3) | C14—H14A | 0.9700 |
O7—C24 | 1.335 (3) | C14—H14B | 0.9700 |
O7—C25 | 1.458 (3) | C16—C17 | 1.491 (3) |
O8—C19 | 1.363 (3) | C16—H16A | 0.9800 |
O8—C20 | 1.368 (3) | C17—C20 | 1.346 (3) |
C1—C2 | 1.545 (3) | C17—C18 | 1.428 (3) |
C1—C6 | 1.555 (3) | C18—C19 | 1.344 (3) |
C1—H1A | 0.9800 | C18—H18A | 0.9300 |
C2—C22 | 1.540 (3) | C19—H19A | 0.9300 |
C2—C21 | 1.544 (3) | C20—H20A | 0.9300 |
C2—C3 | 1.552 (3) | C21—H21A | 0.9600 |
C3—C23 | 1.551 (3) | C21—H21B | 0.9600 |
C3—C4 | 1.577 (2) | C21—H21C | 0.9600 |
C3—H3A | 0.9800 | C22—H22A | 0.9600 |
C4—C26 | 1.526 (3) | C22—H22B | 0.9600 |
C4—C5 | 1.533 (3) | C22—H22C | 0.9600 |
C4—C9 | 1.598 (2) | C23—C24 | 1.531 (3) |
C5—C6 | 1.500 (3) | C23—H23A | 0.9800 |
C6—C7 | 1.555 (3) | C25—H25A | 0.9600 |
C6—H6A | 0.9800 | C25—H25B | 0.9600 |
C7—C8 | 1.512 (3) | C25—H25C | 0.9600 |
C7—H7A | 0.9700 | C26—H26A | 0.9600 |
C7—H7B | 0.9700 | C26—H26B | 0.9600 |
C8—C13 | 1.340 (3) | C26—H26C | 0.9600 |
C8—C9 | 1.518 (3) | C27—H27A | 0.9600 |
C9—C10 | 1.536 (3) | C27—H27B | 0.9600 |
C9—H9A | 0.9800 | C27—H27C | 0.9600 |
C10—C11 | 1.518 (3) | O1W—H1W1 | 0.834 (10) |
C10—H10A | 0.9700 | O1W—H2W1 | 0.843 (10) |
C10—H10B | 0.9700 | ||
C1—O2—H2A | 109.5 | C8—C13—C12 | 123.60 (17) |
C15—O3—C16 | 118.08 (15) | C8—C13—C14 | 120.57 (17) |
C23—O5—H5A | 109.5 | C12—C13—C14 | 115.82 (16) |
C24—O7—C25 | 114.02 (17) | C15—C14—C13 | 116.77 (17) |
C19—O8—C20 | 106.00 (16) | C15—C14—H14A | 108.1 |
O2—C1—C2 | 112.61 (15) | C13—C14—H14A | 108.1 |
O2—C1—C6 | 108.45 (15) | C15—C14—H14B | 108.1 |
C2—C1—C6 | 112.51 (16) | C13—C14—H14B | 108.1 |
O2—C1—H1A | 107.7 | H14A—C14—H14B | 107.3 |
C2—C1—H1A | 107.7 | O4—C15—O3 | 117.75 (18) |
C6—C1—H1A | 107.7 | O4—C15—C14 | 123.19 (18) |
C22—C2—C21 | 106.37 (16) | O3—C15—C14 | 119.02 (16) |
C22—C2—C1 | 108.60 (16) | O3—C16—C17 | 105.89 (15) |
C21—C2—C1 | 108.38 (15) | O3—C16—C12 | 110.70 (14) |
C22—C2—C3 | 111.68 (15) | C17—C16—C12 | 115.75 (16) |
C21—C2—C3 | 114.95 (17) | O3—C16—H16A | 108.1 |
C1—C2—C3 | 106.68 (14) | C17—C16—H16A | 108.1 |
C23—C3—C2 | 114.79 (15) | C12—C16—H16A | 108.1 |
C23—C3—C4 | 113.45 (15) | C20—C17—C18 | 105.48 (18) |
C2—C3—C4 | 111.33 (14) | C20—C17—C16 | 125.14 (18) |
C23—C3—H3A | 105.4 | C18—C17—C16 | 129.34 (17) |
C2—C3—H3A | 105.4 | C19—C18—C17 | 107.01 (19) |
C4—C3—H3A | 105.4 | C19—C18—H18A | 126.5 |
C26—C4—C5 | 108.80 (15) | C17—C18—H18A | 126.5 |
C26—C4—C3 | 116.15 (15) | C18—C19—O8 | 110.39 (19) |
C5—C4—C3 | 109.99 (15) | C18—C19—H19A | 124.8 |
C26—C4—C9 | 110.15 (15) | O8—C19—H19A | 124.8 |
C5—C4—C9 | 98.41 (13) | C17—C20—O8 | 111.09 (19) |
C3—C4—C9 | 111.86 (14) | C17—C20—H20A | 124.5 |
O1—C5—C6 | 122.52 (18) | O8—C20—H20A | 124.5 |
O1—C5—C4 | 122.26 (17) | C2—C21—H21A | 109.5 |
C6—C5—C4 | 114.33 (16) | C2—C21—H21B | 109.5 |
C5—C6—C7 | 104.25 (15) | H21A—C21—H21B | 109.5 |
C5—C6—C1 | 111.81 (16) | C2—C21—H21C | 109.5 |
C7—C6—C1 | 115.12 (16) | H21A—C21—H21C | 109.5 |
C5—C6—H6A | 108.5 | H21B—C21—H21C | 109.5 |
C7—C6—H6A | 108.5 | C2—C22—H22A | 109.5 |
C1—C6—H6A | 108.5 | C2—C22—H22B | 109.5 |
C8—C7—C6 | 114.23 (15) | H22A—C22—H22B | 109.5 |
C8—C7—H7A | 108.7 | C2—C22—H22C | 109.5 |
C6—C7—H7A | 108.7 | H22A—C22—H22C | 109.5 |
C8—C7—H7B | 108.7 | H22B—C22—H22C | 109.5 |
C6—C7—H7B | 108.7 | O5—C23—C24 | 104.23 (15) |
H7A—C7—H7B | 107.6 | O5—C23—C3 | 115.01 (16) |
C13—C8—C7 | 121.79 (17) | C24—C23—C3 | 113.71 (16) |
C13—C8—C9 | 123.16 (17) | O5—C23—H23A | 107.9 |
C7—C8—C9 | 114.99 (16) | C24—C23—H23A | 107.9 |
C8—C9—C10 | 113.69 (16) | C3—C23—H23A | 107.9 |
C8—C9—C4 | 109.64 (15) | O6—C24—O7 | 123.39 (19) |
C10—C9—C4 | 115.77 (15) | O6—C24—C23 | 124.0 (2) |
C8—C9—H9A | 105.6 | O7—C24—C23 | 112.54 (17) |
C10—C9—H9A | 105.6 | O7—C25—H25A | 109.5 |
C4—C9—H9A | 105.6 | O7—C25—H25B | 109.5 |
C11—C10—C9 | 113.56 (16) | H25A—C25—H25B | 109.5 |
C11—C10—H10A | 108.9 | O7—C25—H25C | 109.5 |
C9—C10—H10A | 108.9 | H25A—C25—H25C | 109.5 |
C11—C10—H10B | 108.9 | H25B—C25—H25C | 109.5 |
C9—C10—H10B | 108.9 | C4—C26—H26A | 109.5 |
H10A—C10—H10B | 107.7 | C4—C26—H26B | 109.5 |
C10—C11—C12 | 111.75 (16) | H26A—C26—H26B | 109.5 |
C10—C11—H11A | 109.3 | C4—C26—H26C | 109.5 |
C12—C11—H11A | 109.3 | H26A—C26—H26C | 109.5 |
C10—C11—H11B | 109.3 | H26B—C26—H26C | 109.5 |
C12—C11—H11B | 109.3 | C12—C27—H27A | 109.5 |
H11A—C11—H11B | 107.9 | C12—C27—H27B | 109.5 |
C13—C12—C11 | 110.05 (15) | H27A—C27—H27B | 109.5 |
C13—C12—C27 | 110.61 (15) | C12—C27—H27C | 109.5 |
C11—C12—C27 | 111.21 (16) | H27A—C27—H27C | 109.5 |
C13—C12—C16 | 105.90 (15) | H27B—C27—H27C | 109.5 |
C11—C12—C16 | 108.13 (14) | H1W1—O1W—H2W1 | 110 (3) |
C27—C12—C16 | 110.78 (15) | ||
O2—C1—C2—C22 | −48.6 (2) | C10—C11—C12—C13 | −50.7 (2) |
C6—C1—C2—C22 | −171.55 (16) | C10—C11—C12—C27 | 72.3 (2) |
O2—C1—C2—C21 | −163.78 (15) | C10—C11—C12—C16 | −165.89 (15) |
C6—C1—C2—C21 | 73.28 (19) | C7—C8—C13—C12 | 177.37 (16) |
O2—C1—C2—C3 | 71.90 (18) | C9—C8—C13—C12 | 0.4 (3) |
C6—C1—C2—C3 | −51.0 (2) | C7—C8—C13—C14 | −4.0 (3) |
C22—C2—C3—C23 | −44.9 (2) | C9—C8—C13—C14 | 178.97 (17) |
C21—C2—C3—C23 | 76.4 (2) | C11—C12—C13—C8 | 23.8 (2) |
C1—C2—C3—C23 | −163.39 (15) | C27—C12—C13—C8 | −99.5 (2) |
C22—C2—C3—C4 | −175.47 (16) | C16—C12—C13—C8 | 140.46 (17) |
C21—C2—C3—C4 | −54.2 (2) | C11—C12—C13—C14 | −154.82 (15) |
C1—C2—C3—C4 | 66.01 (19) | C27—C12—C13—C14 | 81.9 (2) |
C23—C3—C4—C26 | −26.9 (2) | C16—C12—C13—C14 | −38.18 (19) |
C2—C3—C4—C26 | 104.35 (19) | C8—C13—C14—C15 | 177.96 (16) |
C23—C3—C4—C5 | −151.03 (16) | C12—C13—C14—C15 | −3.4 (2) |
C2—C3—C4—C5 | −19.7 (2) | C16—O3—C15—O4 | −175.46 (16) |
C23—C3—C4—C9 | 100.69 (18) | C16—O3—C15—C14 | 2.0 (2) |
C2—C3—C4—C9 | −128.02 (16) | C13—C14—C15—O4 | −157.87 (18) |
C26—C4—C5—O1 | 20.6 (2) | C13—C14—C15—O3 | 24.8 (2) |
C3—C4—C5—O1 | 148.82 (17) | C15—O3—C16—C17 | −174.57 (15) |
C9—C4—C5—O1 | −94.16 (19) | C15—O3—C16—C12 | −48.4 (2) |
C26—C4—C5—C6 | −169.93 (15) | C13—C12—C16—O3 | 64.86 (17) |
C3—C4—C5—C6 | −41.7 (2) | C11—C12—C16—O3 | −177.22 (14) |
C9—C4—C5—C6 | 75.35 (17) | C27—C12—C16—O3 | −55.1 (2) |
O1—C5—C6—C7 | 101.4 (2) | C13—C12—C16—C17 | −174.66 (15) |
C4—C5—C6—C7 | −68.06 (18) | C11—C12—C16—C17 | −56.7 (2) |
O1—C5—C6—C1 | −133.60 (18) | C27—C12—C16—C17 | 65.4 (2) |
C4—C5—C6—C1 | 56.9 (2) | O3—C16—C17—C20 | −135.1 (2) |
O2—C1—C6—C5 | −132.57 (17) | C12—C16—C17—C20 | 101.9 (2) |
C2—C1—C6—C5 | −7.3 (2) | O3—C16—C17—C18 | 47.3 (3) |
O2—C1—C6—C7 | −13.8 (2) | C12—C16—C17—C18 | −75.7 (3) |
C2—C1—C6—C7 | 111.39 (18) | C20—C17—C18—C19 | −1.6 (3) |
C5—C6—C7—C8 | 47.4 (2) | C16—C17—C18—C19 | 176.3 (2) |
C1—C6—C7—C8 | −75.5 (2) | C17—C18—C19—O8 | 0.7 (3) |
C6—C7—C8—C13 | 137.38 (17) | C20—O8—C19—C18 | 0.5 (3) |
C6—C7—C8—C9 | −45.4 (2) | C18—C17—C20—O8 | 2.0 (3) |
C13—C8—C9—C10 | 2.5 (3) | C16—C17—C20—O8 | −176.02 (19) |
C7—C8—C9—C10 | −174.69 (15) | C19—O8—C20—C17 | −1.6 (3) |
C13—C8—C9—C4 | −128.88 (17) | C2—C3—C23—O5 | −46.9 (2) |
C7—C8—C9—C4 | 54.0 (2) | C4—C3—C23—O5 | 82.7 (2) |
C26—C4—C9—C8 | −176.16 (16) | C2—C3—C23—C24 | 73.2 (2) |
C5—C4—C9—C8 | −62.51 (17) | C4—C3—C23—C24 | −157.22 (17) |
C3—C4—C9—C8 | 53.1 (2) | C25—O7—C24—O6 | 6.5 (3) |
C26—C4—C9—C10 | 53.6 (2) | C25—O7—C24—C23 | −177.14 (18) |
C5—C4—C9—C10 | 167.24 (15) | O5—C23—C24—O6 | −12.4 (3) |
C3—C4—C9—C10 | −77.2 (2) | C3—C23—C24—O6 | −138.4 (2) |
C8—C9—C10—C11 | −30.4 (2) | O5—C23—C24—O7 | 171.26 (17) |
C4—C9—C10—C11 | 97.84 (19) | C3—C23—C24—O7 | 45.3 (2) |
C9—C10—C11—C12 | 55.7 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H2A···O1Wi | 0.82 | 2.02 | 2.835 (2) | 171 |
O5—H5A···O1Wii | 0.82 | 2.05 | 2.760 (2) | 144 |
O1W—H1W1···O1iii | 0.84 (2) | 1.98 (3) | 2.809 (2) | 169 (3) |
O1W—H2W1···O6 | 0.84 (2) | 1.99 (2) | 2.821 (2) | 167 (3) |
C1—H1A···O1iv | 0.98 | 2.39 | 3.325 (2) | 160 |
C3—H3A···O2 | 0.98 | 2.57 | 3.032 (2) | 109 |
C3—H3A···O7 | 0.98 | 2.40 | 2.861 (2) | 108 |
C7—H7A···O2 | 0.97 | 2.34 | 2.690 (2) | 100 |
C7—H7B···O4v | 0.97 | 2.38 | 3.282 (2) | 155 |
C21—H21B···O1 | 0.96 | 2.59 | 3.459 (2) | 150 |
C21—H21C···O5 | 0.96 | 2.46 | 3.077 (3) | 122 |
C27—H27B···O3 | 0.96 | 2.57 | 2.911 (2) | 101 |
C23—H23A···Cg1vi | 0.98 | 3.04 | 3.884 (2) | 146 |
C25—H25A···Cg1vii | 0.96 | 3.15 | 3.981 (3) | 146 |
Symmetry codes: (i) −x, y−1/2, −z+1; (ii) −x, y+1/2, −z+1; (iii) x, y, z+1; (iv) −x, y−1/2, −z; (v) −x+1, y+1/2, −z; (vi) −x+1, y+1/2, −z+1; (vii) −x+1, y−1/2, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C27H34O8·H2O |
Mr | 504.56 |
Crystal system, space group | Monoclinic, P21 |
Temperature (K) | 100 |
a, b, c (Å) | 11.5897 (1), 8.8972 (1), 11.7397 (1) |
β (°) | 90.571 (1) |
V (Å3) | 1210.49 (2) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.10 |
Crystal size (mm) | 0.51 × 0.26 × 0.15 |
Data collection | |
Diffractometer | Bruker SMART APEX2 CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2005) |
Tmin, Tmax | 0.949, 0.985 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 29214, 3748, 3473 |
Rint | 0.035 |
(sin θ/λ)max (Å−1) | 0.703 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.037, 0.102, 1.06 |
No. of reflections | 3748 |
No. of parameters | 336 |
No. of restraints | 3 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.60, −0.30 |
Computer programs: APEX2 (Bruker, 2005), SAINT (Bruker, 2005), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2003).
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H2A···O1Wi | 0.82 | 2.0218 | 2.835 (2) | 171 |
O5—H5A···O1Wii | 0.82 | 2.0508 | 2.760 (2) | 144 |
O1W—H1W1···O1iii | 0.84 (2) | 1.98 (3) | 2.809 (2) | 169 (3) |
O1W—H2W1···O6 | 0.842 (19) | 1.994 (19) | 2.821 (2) | 167 (3) |
C1—H1A···O1iv | 0.98 | 2.3854 | 3.325 (2) | 160 |
C3—H3A···O2 | 0.98 | 2.5721 | 3.032 (2) | 109 |
C3—H3A···O7 | 0.98 | 2.3981 | 2.861 (2) | 108 |
C7—H7A···O2 | 0.97 | 2.3396 | 2.690 (2) | 100 |
C7—H7B···O4v | 0.97 | 2.3753 | 3.282 (2) | 155 |
C21—H21B···O1 | 0.96 | 2.5943 | 3.459 (2) | 150 |
C21—H21C···O5 | 0.96 | 2.4621 | 3.077 (3) | 122 |
C27—H27B···O3 | 0.96 | 2.5696 | 2.911 (2) | 101 |
C23—H23A···Cg1vi | 0.98 | 3.0424 | 3.884 (2) | 146 |
C25—H25A···Cg1vii | 0.96 | 3.1505 | 3.981 (3) | 146 |
Symmetry codes: (i) −x, y−1/2, −z+1; (ii) −x, y+1/2, −z+1; (iii) x, y, z+1; (iv) −x, y−1/2, −z; (v) −x+1, y+1/2, −z; (vi) −x+1, y+1/2, −z+1; (vii) −x+1, y−1/2, −z+1. |
Acknowledgements
The authors thank Universiti Sains Malaysia for the University Golden Goose (grant No. 1001/PFIZIK/811012) and the Malaysian Government for the E-Science Fund (grant No. 305/PKIMIA/613411).
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Swietenia macrophylla King (Meliaceae) or locally known as Big-leaf mahogany is an evergreen tree that reaches 45 to 60 meter in height. The decoction of the seeds of Swietenia macrophylla King was used traditionally to induce abortion, to heal wounds and to treat various skin ailments (Munoz et al., 2000). In Malaysia, the seeds were ingested by local folks to provide cure for high blood pressure (Chan et al., 1976). The bark extract of Swietenia macrophylla King was also found to be active in antimalaria activity (Soediro et al., 1990). In a continual research on this plant, the leaf extracts of S. macrophylla were examined. The title compound, (I), (systematic name: 7,11-Methano-2H-cycloocta[f][2]benzopyran-8-acetic acid, 4-(3-furanyl)-1,4,4a,5,6,6a,7,8,9,10,11,12-dodecahydro-α,10-dihydroxy- 4a,7,9,9-tetramethyl-2,13-dioxo-methyl ester monohydrate) has been isolated from the n-hexane extract. It has been shown to possess biological activities such as antimalaria (Jean et al., 2000) and antifeedant (Kipassa et al., 2008).
The title molecule (Fig. 1) has four fused six-membered rings (A/B/C/D). The conformations adopted by rings A, B, C and D are twist boat, approximate chair, envelope and half-chair, respectively, with the puckering parameter (Cremer & Pople, 1975) Q = 0.774 (2) Å, θ = 85.0 (1)° and ϕ = 72.70 (15)° for ring A; Q = 0.642 (2) Å, θ = 161.9 (2)° and ϕ = 200.9 (6)° for ring B; Q = 0.460 (2) Å, θ = 127.4 (2)° and ϕ = 354.3 (3)° for ring C, with atom C11 displaced from the C8/C9/C10/C12/C13 plane by 0.329 (2) Å; and Q = 0.587 (2) Å, θ = 111.3 (2)° and ϕ = 93.72 (19)° for ring D, with the C12 and C16 pucker atoms deviating from the C13—C15/O3 plane by 0.343 (2) Å and -0.384 (2) Å, respectively. The furan ring (C17—C20/O8) is planar and is attached equatorially to lactone ring D, the torsion angle C12–C16–C17–C20 being 101.9 (2)°. The orientation of the acetic acid, 2-hydroxy-methyl ester group (C23—C25/O5—O7) at C3 can be indicated by the torsion angles of C2–C3–C23–O5 = -46.9 (2)° and C2–C3–C23–C24 = 73.2 (2)° and the methyoxyl group is slightly deviated with respect to the carbonyl group with the torsion angle C25–O7–C24–O6 of 6.5 (3)°. The bond lengths and angles in (I) are within normal ranges (Allen et al., 1987) and comparable to the related structures (Fowles et al., 2007; Solomon et al., 2003).
In the crystal packing (Fig. 2), O—H···O hydrogen bonds and weak C—H···O interactions connect the molecules into two-dimensional network parallel to the (1 0 0) plane. O—H···O hydrogen bonds between the water and swietenolide molecules together with weak C—H···O intra- and intermolecular interactions (Table 1) play an important role in the stabilization of the crystal structure. C—H···π interactions involving furan ring (C17—C20/O8, centroid Cg1) are also observed in the crystal (Table 1).