organic compounds
4,4′-Dimethyl-2,2′-[(3-azapentane-1,5-diyl)bis(nitrilomethylidyne)]diphenol
aSchool of Science, Xi'an University of Architecture and Technology, Xi'an 710055, People's Republic of China, and bXi'an LiBang Pharmaceutical Co. Ltd, Xi'an 710086, People's Republic of China
*Correspondence e-mail: fangfangdang@yahoo.com.cn
In the 20H25N3O2, the salicylaldimine groups at each end of the molecule are essentially planar and make a dihedral angle of 84.94 (3)° with each other. There are strong intramolecular O—H⋯N hydrogen bonds and a weak intermolecular N—H⋯O hydrogen bond.
of the title Schiff base, CExperimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2004); cell SAINT (Bruker, 2004); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536808018837/is2306sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536808018837/is2306Isup2.hkl
N-(2-aminoethyl)ethane-1,2-diamine (0.01 mol, 1.03 g) and 2-hydroxy-5-methylbenzaldehyde (0.02 mol, 2.72 g) were dissolved in ethanol and the solution was refluxed for 1 h. After evaporation, a crude product was recrystallized twice from ethanol to give a pure yellow product. Yield: 80.5%. Calcd. for C20H25N3O2: C 70.77, H 7.42, N 12.38; Found: C 71.02, H 7.47, N 12.27%.
All H atoms were located from a difference Fourier map. Then H atoms were placed in geometrically idealized positions (C—H = 0.93–0.97 Å, O—H = 0.82 Å and N—H = 0.86 Å) and constrained to ride on their parent atoms, with Uiso(H) = 1.2Ueq(C, N) or 1.5Ueq(O). In the absence of significant
effects, Friedel pairs have been merged.Data collection: APEX2 (Bruker, 2004); cell
SAINT (Bruker, 2004); data reduction: SAINT (Bruker, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. The structure of (I), showing 30% probability displacement ellipsoids and the atom-numbering scheme. |
C20H25N3O2 | F(000) = 728 |
Mr = 339.43 | Dx = 1.231 Mg m−3 |
Orthorhombic, Pca21 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2c -2ac | Cell parameters from 2105 reflections |
a = 9.132 (4) Å | θ = 1.0–27.5° |
b = 5.834 (3) Å | µ = 0.08 mm−1 |
c = 34.365 (16) Å | T = 296 K |
V = 1830.8 (15) Å3 | Block, yellow |
Z = 4 | 0.34 × 0.32 × 0.28 mm |
Bruker APEXII area-detector diffractometer | 2125 independent reflections |
Radiation source: fine-focus sealed tube | 1867 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.031 |
ϕ and ω scans | θmax = 27.5°, θmin = 2.4° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −11→11 |
Tmin = 0.970, Tmax = 0.981 | k = −7→7 |
14593 measured reflections | l = −44→44 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.037 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.108 | H-atom parameters constrained |
S = 1.07 | w = 1/[σ2(Fo2) + (0.0588P)2 + 0.2052P] where P = (Fo2 + 2Fc2)/3 |
2125 reflections | (Δ/σ)max < 0.001 |
228 parameters | Δρmax = 0.15 e Å−3 |
1 restraint | Δρmin = −0.18 e Å−3 |
C20H25N3O2 | V = 1830.8 (15) Å3 |
Mr = 339.43 | Z = 4 |
Orthorhombic, Pca21 | Mo Kα radiation |
a = 9.132 (4) Å | µ = 0.08 mm−1 |
b = 5.834 (3) Å | T = 296 K |
c = 34.365 (16) Å | 0.34 × 0.32 × 0.28 mm |
Bruker APEXII area-detector diffractometer | 2125 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 1867 reflections with I > 2σ(I) |
Tmin = 0.970, Tmax = 0.981 | Rint = 0.031 |
14593 measured reflections |
R[F2 > 2σ(F2)] = 0.037 | 1 restraint |
wR(F2) = 0.108 | H-atom parameters constrained |
S = 1.07 | Δρmax = 0.15 e Å−3 |
2125 reflections | Δρmin = −0.18 e Å−3 |
228 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.8321 (3) | 1.4932 (4) | 0.36346 (6) | 0.0766 (7) | |
H1A | 0.8862 | 1.4181 | 0.3493 | 0.115* | |
O2 | 0.7661 (2) | 0.0213 (3) | 0.18913 (5) | 0.0594 (5) | |
H2A | 0.8305 | 0.0960 | 0.1999 | 0.089* | |
N1 | 1.0105 (2) | 1.1600 (4) | 0.34511 (6) | 0.0506 (5) | |
N2 | 0.9202 (2) | 0.3855 (3) | 0.20445 (5) | 0.0479 (4) | |
N3 | 1.0062 (2) | 0.7202 (3) | 0.29474 (6) | 0.0520 (5) | |
H3A | 1.0210 | 0.6583 | 0.3171 | 0.062* | |
C1 | 0.8251 (3) | 1.0370 (4) | 0.43648 (7) | 0.0455 (5) | |
H1C | 0.8686 | 0.8960 | 0.4416 | 0.055* | |
C2 | 0.6782 (4) | 0.9888 (6) | 0.49830 (9) | 0.0762 (9) | |
H2B | 0.7544 | 0.8830 | 0.5051 | 0.114* | |
H2C | 0.5895 | 0.9059 | 0.4931 | 0.114* | |
H2D | 0.6622 | 1.0933 | 0.5195 | 0.114* | |
C3 | 0.7226 (3) | 1.1209 (4) | 0.46259 (7) | 0.0495 (6) | |
C4 | 0.6605 (3) | 1.3338 (5) | 0.45429 (7) | 0.0545 (6) | |
H4A | 0.5923 | 1.3947 | 0.4715 | 0.065* | |
C5 | 0.6967 (3) | 1.4566 (4) | 0.42153 (8) | 0.0563 (6) | |
H5A | 0.6526 | 1.5977 | 0.4170 | 0.068* | |
C6 | 0.7992 (3) | 1.3710 (4) | 0.39506 (7) | 0.0487 (5) | |
C7 | 0.8657 (2) | 1.1551 (4) | 0.40291 (6) | 0.0399 (5) | |
C8 | 0.9752 (2) | 1.0605 (4) | 0.37676 (7) | 0.0437 (5) | |
H8A | 1.0208 | 0.9233 | 0.3833 | 0.052* | |
C9 | 1.1263 (3) | 1.0645 (5) | 0.32037 (7) | 0.0584 (7) | |
H9A | 1.1836 | 0.9560 | 0.3354 | 0.070* | |
H9B | 1.1911 | 1.1871 | 0.3122 | 0.070* | |
C10 | 1.0648 (3) | 0.9444 (4) | 0.28455 (7) | 0.0532 (6) | |
H10A | 0.9879 | 1.0376 | 0.2732 | 0.064* | |
H10B | 1.1416 | 0.9266 | 0.2653 | 0.064* | |
C11 | 0.9210 (3) | 0.6085 (4) | 0.26450 (6) | 0.0472 (5) | |
H11A | 0.8477 | 0.7152 | 0.2550 | 0.057* | |
H11B | 0.8698 | 0.4788 | 0.2758 | 0.057* | |
C12 | 1.0123 (3) | 0.5243 (5) | 0.23003 (7) | 0.0521 (6) | |
H12A | 1.0510 | 0.6543 | 0.2158 | 0.063* | |
H12B | 1.0940 | 0.4335 | 0.2394 | 0.063* | |
C13 | 0.8784 (3) | 0.4705 (4) | 0.17204 (7) | 0.0441 (5) | |
H13A | 0.9125 | 0.6143 | 0.1647 | 0.053* | |
C14 | 0.7784 (2) | 0.3473 (3) | 0.14626 (6) | 0.0412 (5) | |
C15 | 0.7306 (3) | 0.4500 (4) | 0.11167 (7) | 0.0466 (5) | |
H15A | 0.7683 | 0.5925 | 0.1048 | 0.056* | |
C16 | 0.5766 (4) | 0.4651 (6) | 0.05050 (9) | 0.0746 (8) | |
H16A | 0.4734 | 0.4399 | 0.0474 | 0.112* | |
H16B | 0.6279 | 0.4036 | 0.0285 | 0.112* | |
H16C | 0.5955 | 0.6266 | 0.0524 | 0.112* | |
C17 | 0.6291 (3) | 0.3464 (4) | 0.08737 (7) | 0.0519 (6) | |
C18 | 0.5756 (3) | 0.1310 (4) | 0.09836 (8) | 0.0562 (6) | |
H18A | 0.5074 | 0.0582 | 0.0825 | 0.067* | |
C19 | 0.6215 (3) | 0.0237 (4) | 0.13212 (8) | 0.0534 (6) | |
H19A | 0.5838 | −0.1193 | 0.1387 | 0.064* | |
C20 | 0.7242 (3) | 0.1288 (4) | 0.15635 (7) | 0.0448 (5) |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0892 (16) | 0.0680 (11) | 0.0725 (13) | 0.0077 (11) | 0.0161 (12) | 0.0338 (10) |
O2 | 0.0733 (12) | 0.0477 (9) | 0.0574 (10) | 0.0009 (8) | 0.0025 (9) | 0.0103 (8) |
N1 | 0.0448 (10) | 0.0629 (12) | 0.0440 (10) | −0.0085 (9) | 0.0049 (8) | −0.0061 (9) |
N2 | 0.0467 (10) | 0.0535 (11) | 0.0434 (10) | 0.0017 (9) | 0.0034 (9) | −0.0054 (9) |
N3 | 0.0551 (11) | 0.0628 (12) | 0.0381 (9) | −0.0069 (10) | −0.0017 (9) | 0.0057 (9) |
C1 | 0.0484 (13) | 0.0446 (11) | 0.0435 (12) | 0.0005 (9) | −0.0054 (10) | 0.0057 (9) |
C2 | 0.091 (2) | 0.085 (2) | 0.0526 (15) | −0.0057 (18) | 0.0175 (17) | 0.0134 (15) |
C3 | 0.0516 (14) | 0.0570 (13) | 0.0400 (12) | −0.0081 (11) | 0.0041 (10) | 0.0013 (10) |
C4 | 0.0518 (14) | 0.0562 (14) | 0.0554 (14) | −0.0016 (11) | 0.0111 (11) | −0.0116 (11) |
C5 | 0.0554 (15) | 0.0471 (12) | 0.0664 (16) | 0.0058 (11) | 0.0051 (13) | 0.0010 (11) |
C6 | 0.0491 (13) | 0.0460 (12) | 0.0511 (12) | −0.0032 (10) | −0.0004 (10) | 0.0066 (10) |
C7 | 0.0378 (11) | 0.0429 (10) | 0.0391 (11) | −0.0038 (8) | −0.0007 (9) | −0.0001 (8) |
C8 | 0.0377 (11) | 0.0502 (12) | 0.0432 (11) | −0.0037 (9) | −0.0034 (9) | −0.0039 (9) |
C9 | 0.0437 (13) | 0.0815 (17) | 0.0501 (13) | −0.0115 (13) | 0.0066 (11) | −0.0145 (13) |
C10 | 0.0551 (14) | 0.0640 (14) | 0.0405 (12) | −0.0100 (11) | 0.0078 (11) | −0.0025 (11) |
C11 | 0.0450 (12) | 0.0540 (12) | 0.0427 (12) | −0.0070 (10) | 0.0053 (10) | −0.0001 (10) |
C12 | 0.0410 (11) | 0.0667 (14) | 0.0487 (13) | 0.0014 (11) | 0.0006 (10) | −0.0066 (11) |
C13 | 0.0424 (11) | 0.0437 (11) | 0.0463 (12) | −0.0010 (9) | 0.0062 (9) | −0.0030 (9) |
C14 | 0.0428 (11) | 0.0384 (10) | 0.0422 (11) | 0.0013 (9) | 0.0085 (9) | −0.0041 (9) |
C15 | 0.0522 (13) | 0.0417 (11) | 0.0460 (12) | −0.0025 (10) | 0.0059 (10) | −0.0008 (9) |
C16 | 0.089 (2) | 0.083 (2) | 0.0516 (15) | −0.0001 (18) | −0.0152 (15) | 0.0008 (14) |
C17 | 0.0567 (15) | 0.0551 (13) | 0.0438 (12) | 0.0038 (11) | 0.0019 (11) | −0.0057 (10) |
C18 | 0.0580 (15) | 0.0545 (14) | 0.0559 (15) | −0.0049 (11) | 0.0013 (12) | −0.0167 (12) |
C19 | 0.0575 (15) | 0.0396 (11) | 0.0632 (15) | −0.0071 (10) | 0.0107 (12) | −0.0086 (11) |
C20 | 0.0494 (12) | 0.0386 (11) | 0.0463 (12) | 0.0021 (9) | 0.0108 (10) | −0.0029 (9) |
O1—C6 | 1.333 (3) | C9—H9A | 0.9700 |
O1—H1A | 0.8200 | C9—H9B | 0.9700 |
O2—C20 | 1.345 (3) | C10—H10A | 0.9700 |
O2—H2A | 0.8200 | C10—H10B | 0.9700 |
N1—C8 | 1.274 (3) | C11—C12 | 1.530 (3) |
N1—C9 | 1.467 (3) | C11—H11A | 0.9700 |
N2—C13 | 1.277 (3) | C11—H11B | 0.9700 |
N2—C12 | 1.461 (3) | C12—H12A | 0.9700 |
N3—C11 | 1.453 (3) | C12—H12B | 0.9700 |
N3—C10 | 1.456 (3) | C13—C14 | 1.461 (3) |
N3—H3A | 0.8600 | C13—H13A | 0.9300 |
C1—C3 | 1.386 (3) | C8—H8A | 0.9300 |
C1—C7 | 1.394 (3) | C14—C15 | 1.401 (3) |
C1—H1C | 0.9300 | C14—C20 | 1.411 (3) |
C2—C3 | 1.505 (4) | C15—C17 | 1.386 (3) |
C2—H2B | 0.9600 | C15—H15A | 0.9300 |
C2—H2C | 0.9600 | C16—C17 | 1.521 (4) |
C2—H2D | 0.9600 | C16—H16A | 0.9600 |
C3—C4 | 1.395 (4) | C16—H16B | 0.9600 |
C4—C5 | 1.375 (4) | C16—H16C | 0.9600 |
C4—H4A | 0.9300 | C17—C18 | 1.400 (4) |
C5—C6 | 1.397 (3) | C18—C19 | 1.383 (4) |
C5—H5A | 0.9300 | C18—H18A | 0.9300 |
C6—C7 | 1.424 (3) | C19—C20 | 1.396 (3) |
C7—C8 | 1.453 (3) | C19—H19A | 0.9300 |
C9—C10 | 1.524 (3) | ||
C6—O1—H1A | 109.5 | N3—C11—C12 | 113.95 (19) |
C20—O2—H2A | 109.5 | N3—C11—H11A | 108.8 |
C8—N1—C9 | 120.3 (2) | C12—C11—H11A | 108.8 |
C13—N2—C12 | 118.8 (2) | N3—C11—H11B | 108.8 |
C11—N3—C10 | 115.3 (2) | C12—C11—H11B | 108.8 |
C11—N3—H3A | 122.3 | H11A—C11—H11B | 107.7 |
C10—N3—H3A | 122.3 | N2—C12—C11 | 109.28 (19) |
C3—C1—C7 | 122.7 (2) | N2—C12—H12A | 109.8 |
C3—C1—H1C | 118.6 | C11—C12—H12A | 109.8 |
C7—C1—H1C | 118.6 | N2—C12—H12B | 109.8 |
C3—C2—H2B | 109.5 | C11—C12—H12B | 109.8 |
C3—C2—H2C | 109.5 | H12A—C12—H12B | 108.3 |
H2B—C2—H2C | 109.5 | N2—C13—C14 | 121.6 (2) |
C3—C2—H2D | 109.5 | N2—C13—H13A | 119.2 |
H2B—C2—H2D | 109.5 | C14—C13—H13A | 119.2 |
H2C—C2—H2D | 109.5 | N1—C8—C7 | 121.9 (2) |
C1—C3—C4 | 117.2 (2) | N1—C8—H8A | 119.0 |
C1—C3—C2 | 122.0 (2) | C7—C8—H8A | 119.0 |
C4—C3—C2 | 120.9 (2) | C15—C14—C20 | 119.0 (2) |
C5—C4—C3 | 122.3 (2) | C15—C14—C13 | 119.9 (2) |
C5—C4—H4A | 118.9 | C20—C14—C13 | 121.0 (2) |
C3—C4—H4A | 118.9 | C17—C15—C14 | 122.2 (2) |
C4—C5—C6 | 120.5 (2) | C17—C15—H15A | 118.9 |
C4—C5—H5A | 119.7 | C14—C15—H15A | 118.9 |
C6—C5—H5A | 119.7 | C17—C16—H16A | 109.5 |
O1—C6—C5 | 119.4 (2) | C17—C16—H16B | 109.5 |
O1—C6—C7 | 122.0 (2) | H16A—C16—H16B | 109.5 |
C5—C6—C7 | 118.6 (2) | C17—C16—H16C | 109.5 |
C1—C7—C6 | 118.7 (2) | H16A—C16—H16C | 109.5 |
C1—C7—C8 | 120.4 (2) | H16B—C16—H16C | 109.5 |
C6—C7—C8 | 120.8 (2) | C15—C17—C18 | 117.5 (2) |
N1—C9—C10 | 112.2 (2) | C15—C17—C16 | 120.9 (2) |
N1—C9—H9A | 109.2 | C18—C17—C16 | 121.5 (3) |
C10—C9—H9A | 109.2 | C19—C18—C17 | 121.8 (2) |
N1—C9—H9B | 109.2 | C19—C18—H18A | 119.1 |
C10—C9—H9B | 109.2 | C17—C18—H18A | 119.1 |
H9A—C9—H9B | 107.9 | C18—C19—C20 | 120.3 (2) |
N3—C10—C9 | 110.8 (2) | C18—C19—H19A | 119.8 |
N3—C10—H10A | 109.5 | C20—C19—H19A | 119.8 |
C9—C10—H10A | 109.5 | O2—C20—C19 | 119.1 (2) |
N3—C10—H10B | 109.5 | O2—C20—C14 | 121.8 (2) |
C9—C10—H10B | 109.5 | C19—C20—C14 | 119.1 (2) |
H10A—C10—H10B | 108.1 |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1A···N1 | 0.82 | 1.89 | 2.614 (4) | 146 |
O2—H2A···N2 | 0.82 | 1.88 | 2.602 (3) | 146 |
N3—H3A···O1i | 0.86 | 2.54 | 3.140 (3) | 128 |
Symmetry code: (i) x, y−1, z. |
Experimental details
Crystal data | |
Chemical formula | C20H25N3O2 |
Mr | 339.43 |
Crystal system, space group | Orthorhombic, Pca21 |
Temperature (K) | 296 |
a, b, c (Å) | 9.132 (4), 5.834 (3), 34.365 (16) |
V (Å3) | 1830.8 (15) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.08 |
Crystal size (mm) | 0.34 × 0.32 × 0.28 |
Data collection | |
Diffractometer | Bruker APEXII area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.970, 0.981 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 14593, 2125, 1867 |
Rint | 0.031 |
(sin θ/λ)max (Å−1) | 0.649 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.037, 0.108, 1.07 |
No. of reflections | 2125 |
No. of parameters | 228 |
No. of restraints | 1 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.15, −0.18 |
Computer programs: APEX2 (Bruker, 2004), SAINT (Bruker, 2004), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1A···N1 | 0.82 | 1.89 | 2.614 (4) | 146 |
O2—H2A···N2 | 0.82 | 1.88 | 2.602 (3) | 146 |
N3—H3A···O1i | 0.86 | 2.54 | 3.140 (3) | 128 |
Symmetry code: (i) x, y−1, z. |
Acknowledgements
We are grateful to the Starting Fund for the Doctoral Program of Xi'an University of Architecture & Technology (DB12051) for financial support.
References
Bruker (2004). APEX2 and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Rodriguez de Barbarin, C. O., Bailey, N. A., Fenton, D. E. & He, Q. (1994). Inorg. Chim. Acta, 219, 205–207. CSD CrossRef CAS Google Scholar
Sheldrick, G. M. (1996). SADABS. University of Göttingen, Germany. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
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It was reported that zinc coordinated by phenolate groups in a Schiff-base ligand can act as a nucleophile to catalyze ester hydrolysis (Rodriguez de Barbarin et al., 1994). These results promoted us to investigate linear amine-phenol ligands obtained by reducing Schiff bases, which have greater flexibility, better water solubility and more inertness to hydrolytic decomposition than corresponding Schiff bases. While a number of their complexes with transition metals and main group metals have been reported, the crystal structures of these Schiff-base ligands remain relatively unexplored. So we present here the crystal structure of the title compound, N,N'-bis(5-methylsalicylidene)-1,5-diamino-3-azapentane, (I).
The molecular structure of (I) is illustrated in Fig. 1. Compound (I) is a typical salicylaldehyde schiff derivative with normal geometric parameters. The two pendant moieties attached to the ends of the C—C—N—C—C backbone adopt a cis conformation. The N3 atom exhibits tetrahedral sp3 hybridization, whereas the two amide N atoms display planar sp2 hybridization. The C8—N1 and C13—N2 bonds show the expected double-bond character. In our case, the salicylaldimine moiety is nearly planar. The dihedral angle between the salicylaldimine groups is 84.94 (3)°. The crystal structure of (I) is stabilized by intramolecular O—H···N hydrogen bonds and an intermolecular N—H···O hydrogen bond (Table 1).