organic compounds
Ammonium tri-tert-butoxysilanethiolate
aDepartment of Inorganic Chemistry, Faculty of Chemistry, Gdańsk University of Technology, 11/12 G. Narutowicz Street, 80952 PL Gdańsk, Poland
*Correspondence e-mail: kasiab29@wp.pl
The cations and anions of the title salt, NH4+·C12H27O3SSi−, are linked by N—H⋯S and N—H⋯O hydrogen bonds into a linear chain that runs along the a axis of the monoclinic The contains two cations and two anions.
Related literature
For the synthesis of the thiol reagent, see: Piękoś & Wojnowski (1962). For an early study of its ammonium salt, see: Wojnowski (1971). For the structures of similar salts and comparison bond distances, see: Baranowska (2007); Baranowska, Chojnacki, Becker & Wojnowski (2003); Baranowska, Chojnacki, Gosiewska & Wojnowski (2006); Baranowska, Chojnacki, Konitz et al. (2006); Baranowska, Chojnacki, Wojnowski & Becker (2003); Becker et al. (2002, 2004); Chojnacki (2008); Dołęga et al. (2008); Pladzyk & Baranowska (2007). For the graph-set description of hydrogen-bonding patterns, see: Bernstein et al. (1995); Etter (1990).
Experimental
Crystal data
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Data collection
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Refinement
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Data collection: CrysAlis CCD (Oxford Diffraction, 2006); cell CrysAlis RED (Oxford Diffraction, 2006); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).
Supporting information
10.1107/S1600536808018370/ng2465sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536808018370/ng2465Isup2.hkl
The substrate (tBuO)3SiSH was prepared according to the literature (Piękoś & Wojnowski, 1962).
To the mixture of to tri-tert-butoxysilanethiol (1.9 g; 0.0064 mol) and metallic magnesium (0.084 g; 0.0035 mol) in toluene one drop of concentrated ammonia solution was added. The mixture was stirred and heated at boiling point of toluene for one week. The solution was separated from the metal by filtration. The solvent was removed. The liquid residue was kept in refrigerator (4 °C) for a few days for crystallization. The final product has a form of colourless, crystalline needles.
All H atoms were refined as riding on C atoms with methyl C—H = 0.98 Å, and 1.5Ueq(C) for CH3 groups. Hydrogen atoms of ammonium were found in the electron density Fourier map and were refined with N—H bond lengths constrained to 0.89 (2) Å.
Data collection: CrysAlis CCD (Oxford Diffraction, 2006); cell
CrysAlis RED (Oxford Diffraction, 2006); data reduction: CrysAlis RED (Oxford Diffraction, 2006); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).Fig. 1. A view of the molecule of (I), showing the atom-labelling scheme. Displacement ellipsoids are drawn at the 30% probability level. All tBu H atoms have been omitted for clarity. Hydrogen bonds are indicated with dashed lines. | |
Fig. 2. The chains of molecules of (I) linked by hydrogen bonds. A view direction is parallel to the crystallographic b axis. All tBu H atoms have been omitted for clarity. Hydrogen bonds are indicated with dashed lines. |
NH4+·C12H27O3SSi− | F(000) = 1312 |
Mr = 297.53 | Dx = 1.074 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 7143 reflections |
a = 11.9981 (4) Å | θ = 2.0–32.4° |
b = 12.5580 (5) Å | µ = 0.24 mm−1 |
c = 24.8181 (12) Å | T = 120 K |
β = 100.336 (4)° | Prism, colourless |
V = 3678.7 (3) Å3 | 0.2 × 0.06 × 0.04 mm |
Z = 8 |
Oxford Diffraction KM-4 CCD diffractometer | 4509 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.028 |
Detector resolution: 8.1883 pixels mm-1 | θmax = 25.1°, θmin = 2.4° |
0.75° width ω scans | h = −14→8 |
12272 measured reflections | k = −14→8 |
6433 independent reflections | l = −29→29 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.048 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.126 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.04 | w = 1/[σ2(Fo2) + (0.0746P)2] where P = (Fo2 + 2Fc2)/3 |
6433 reflections | (Δ/σ)max = 0.001 |
367 parameters | Δρmax = 0.72 e Å−3 |
8 restraints | Δρmin = −0.38 e Å−3 |
NH4+·C12H27O3SSi− | V = 3678.7 (3) Å3 |
Mr = 297.53 | Z = 8 |
Monoclinic, P21/c | Mo Kα radiation |
a = 11.9981 (4) Å | µ = 0.24 mm−1 |
b = 12.5580 (5) Å | T = 120 K |
c = 24.8181 (12) Å | 0.2 × 0.06 × 0.04 mm |
β = 100.336 (4)° |
Oxford Diffraction KM-4 CCD diffractometer | 4509 reflections with I > 2σ(I) |
12272 measured reflections | Rint = 0.028 |
6433 independent reflections |
R[F2 > 2σ(F2)] = 0.048 | 8 restraints |
wR(F2) = 0.126 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.04 | Δρmax = 0.72 e Å−3 |
6433 reflections | Δρmin = −0.38 e Å−3 |
367 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
S1 | 0.42331 (5) | 0.53353 (5) | 0.58655 (3) | 0.02431 (17) | |
Si1 | 0.42375 (6) | 0.37946 (6) | 0.61491 (3) | 0.01975 (18) | |
O1 | 0.49073 (14) | 0.35757 (14) | 0.67658 (7) | 0.0264 (4) | |
O2 | 0.47413 (14) | 0.29078 (13) | 0.57685 (7) | 0.0236 (4) | |
O3 | 0.28781 (14) | 0.34803 (14) | 0.60815 (7) | 0.0234 (4) | |
C1 | 0.5191 (2) | 0.4195 (3) | 0.72592 (12) | 0.0377 (7) | |
C2 | 0.4156 (3) | 0.4800 (3) | 0.73596 (13) | 0.0554 (10) | |
H2A | 0.3533 | 0.43 | 0.7369 | 0.083* | |
H2B | 0.3932 | 0.5318 | 0.7064 | 0.083* | |
H2C | 0.4334 | 0.5176 | 0.7711 | 0.083* | |
C3 | 0.6160 (3) | 0.4934 (4) | 0.72026 (16) | 0.0703 (12) | |
H3A | 0.5911 | 0.5443 | 0.6906 | 0.105* | |
H3B | 0.6797 | 0.4516 | 0.7118 | 0.105* | |
H3C | 0.64 | 0.5321 | 0.7547 | 0.105* | |
C4 | 0.5552 (3) | 0.3381 (3) | 0.77117 (12) | 0.0550 (10) | |
H4A | 0.4924 | 0.2889 | 0.7727 | 0.082* | |
H4B | 0.5757 | 0.3749 | 0.8064 | 0.082* | |
H4C | 0.6207 | 0.298 | 0.7635 | 0.082* | |
C5 | 0.5858 (2) | 0.2435 (2) | 0.58098 (11) | 0.0273 (6) | |
C6 | 0.5803 (2) | 0.1793 (2) | 0.52880 (12) | 0.0351 (7) | |
H6A | 0.5641 | 0.2269 | 0.4971 | 0.053* | |
H6B | 0.5202 | 0.1258 | 0.5265 | 0.053* | |
H6C | 0.6531 | 0.1437 | 0.5291 | 0.053* | |
C7 | 0.6098 (3) | 0.1701 (3) | 0.63015 (12) | 0.0424 (8) | |
H7A | 0.6108 | 0.2115 | 0.6637 | 0.064* | |
H7B | 0.6835 | 0.1357 | 0.6314 | 0.064* | |
H7C | 0.5505 | 0.1156 | 0.6272 | 0.064* | |
C8 | 0.6743 (2) | 0.3297 (2) | 0.58404 (15) | 0.0450 (9) | |
H8A | 0.6592 | 0.3729 | 0.5506 | 0.067* | |
H8B | 0.7495 | 0.2972 | 0.5876 | 0.067* | |
H8C | 0.6715 | 0.3751 | 0.6159 | 0.067* | |
C9 | 0.2329 (2) | 0.2472 (2) | 0.61567 (12) | 0.0317 (7) | |
C10 | 0.2878 (3) | 0.1914 (3) | 0.66557 (15) | 0.0667 (12) | |
H10A | 0.3677 | 0.1788 | 0.6638 | 0.1* | |
H10B | 0.2497 | 0.1232 | 0.6684 | 0.1* | |
H10C | 0.2825 | 0.2352 | 0.6977 | 0.1* | |
C11 | 0.2340 (3) | 0.1800 (3) | 0.56391 (15) | 0.0600 (10) | |
H11A | 0.2038 | 0.2223 | 0.5314 | 0.09* | |
H11B | 0.187 | 0.1165 | 0.5649 | 0.09* | |
H11C | 0.3119 | 0.1585 | 0.5625 | 0.09* | |
C12 | 0.1101 (3) | 0.2741 (3) | 0.6167 (2) | 0.0734 (13) | |
H12A | 0.0763 | 0.3086 | 0.5822 | 0.11* | |
H12B | 0.1061 | 0.3224 | 0.6473 | 0.11* | |
H12C | 0.0684 | 0.2086 | 0.6213 | 0.11* | |
S2 | 0.10838 (5) | 0.46097 (5) | 0.41794 (3) | 0.02520 (18) | |
Si2 | 0.05808 (6) | 0.31006 (6) | 0.39125 (3) | 0.02122 (18) | |
O4 | 0.02593 (15) | 0.29638 (15) | 0.32505 (7) | 0.0286 (4) | |
O5 | −0.05329 (15) | 0.28237 (14) | 0.41883 (8) | 0.0311 (5) | |
O6 | 0.15294 (16) | 0.21879 (15) | 0.41046 (7) | 0.0348 (5) | |
C13 | −0.0289 (2) | 0.3627 (3) | 0.28096 (11) | 0.0349 (7) | |
C14 | 0.0582 (3) | 0.4383 (3) | 0.26532 (14) | 0.0525 (10) | |
H14A | 0.0894 | 0.4827 | 0.2969 | 0.079* | |
H14B | 0.0223 | 0.4838 | 0.2351 | 0.079* | |
H14C | 0.1194 | 0.3973 | 0.2538 | 0.079* | |
C15 | −0.1263 (3) | 0.4238 (3) | 0.29753 (13) | 0.0468 (9) | |
H15A | −0.0971 | 0.4715 | 0.3281 | 0.07* | |
H15B | −0.1803 | 0.3737 | 0.3088 | 0.07* | |
H15C | −0.1645 | 0.4659 | 0.2664 | 0.07* | |
C16 | −0.0726 (3) | 0.2868 (3) | 0.23444 (13) | 0.0578 (10) | |
H16A | −0.1298 | 0.2397 | 0.2453 | 0.087* | |
H16B | −0.0096 | 0.244 | 0.226 | 0.087* | |
H16C | −0.1065 | 0.3276 | 0.202 | 0.087* | |
C17 | −0.1164 (3) | 0.1842 (2) | 0.42078 (12) | 0.0354 (7) | |
C18 | −0.1311 (3) | 0.1229 (3) | 0.36650 (16) | 0.0608 (10) | |
H18A | −0.1662 | 0.1694 | 0.3365 | 0.091* | |
H18B | −0.1796 | 0.0607 | 0.3684 | 0.091* | |
H18C | −0.0568 | 0.0993 | 0.3599 | 0.091* | |
C19 | −0.0602 (4) | 0.1198 (3) | 0.4673 (2) | 0.1000 (19) | |
H19A | 0.0185 | 0.1064 | 0.4636 | 0.15* | |
H19B | −0.1002 | 0.0518 | 0.4678 | 0.15* | |
H19C | −0.0616 | 0.1582 | 0.5016 | 0.15* | |
C20 | −0.2341 (3) | 0.2171 (3) | 0.4273 (2) | 0.0743 (13) | |
H20A | −0.2662 | 0.2647 | 0.3972 | 0.111* | |
H20B | −0.2305 | 0.2544 | 0.4623 | 0.111* | |
H20C | −0.2819 | 0.1538 | 0.4267 | 0.111* | |
C21 | 0.2338 (2) | 0.1648 (2) | 0.38299 (12) | 0.0357 (7) | |
C22 | 0.1726 (3) | 0.0832 (3) | 0.34325 (14) | 0.0484 (9) | |
H22A | 0.1192 | 0.1196 | 0.3146 | 0.073* | |
H22B | 0.1311 | 0.0338 | 0.363 | 0.073* | |
H22C | 0.2279 | 0.0436 | 0.3265 | 0.073* | |
C23 | 0.3137 (3) | 0.1104 (3) | 0.42870 (14) | 0.0545 (10) | |
H23A | 0.3499 | 0.164 | 0.4548 | 0.082* | |
H23B | 0.3719 | 0.0719 | 0.4134 | 0.082* | |
H23C | 0.2712 | 0.0602 | 0.4475 | 0.082* | |
C24 | 0.2952 (3) | 0.2437 (3) | 0.35263 (13) | 0.0482 (9) | |
H24A | 0.2411 | 0.2768 | 0.3231 | 0.072* | |
H24B | 0.3539 | 0.2065 | 0.337 | 0.072* | |
H24C | 0.3305 | 0.2988 | 0.3781 | 0.072* | |
N1 | 0.36606 (19) | 0.40699 (19) | 0.47213 (10) | 0.0245 (5) | |
H1A | 0.419 (2) | 0.423 (2) | 0.4515 (10) | 0.038* | |
H1B | 0.2948 (16) | 0.414 (2) | 0.4546 (11) | 0.038* | |
H1C | 0.380 (3) | 0.449 (2) | 0.5020 (10) | 0.048* | |
H1D | 0.379 (2) | 0.3393 (15) | 0.4824 (11) | 0.026* | |
N2 | 0.1426 (2) | 0.5109 (2) | 0.55138 (11) | 0.0333 (6) | |
H2E | 0.071 (2) | 0.503 (4) | 0.5577 (19) | 0.113* | |
H2D | 0.185 (3) | 0.463 (3) | 0.5707 (16) | 0.09* | |
H2F | 0.137 (3) | 0.490 (3) | 0.5165 (8) | 0.047* | |
H2G | 0.166 (3) | 0.5762 (17) | 0.5557 (15) | 0.065* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.0224 (3) | 0.0208 (3) | 0.0313 (4) | −0.0013 (3) | 0.0089 (3) | 0.0004 (3) |
Si1 | 0.0197 (4) | 0.0211 (4) | 0.0188 (4) | −0.0014 (3) | 0.0044 (3) | 0.0005 (3) |
O1 | 0.0250 (9) | 0.0321 (10) | 0.0209 (10) | 0.0016 (8) | 0.0012 (8) | −0.0008 (8) |
O2 | 0.0231 (9) | 0.0238 (10) | 0.0237 (10) | 0.0039 (8) | 0.0038 (8) | 0.0002 (8) |
O3 | 0.0214 (9) | 0.0242 (10) | 0.0249 (10) | −0.0036 (8) | 0.0047 (8) | 0.0026 (8) |
C1 | 0.0325 (16) | 0.055 (2) | 0.0232 (15) | −0.0012 (15) | −0.0011 (13) | −0.0124 (15) |
C2 | 0.066 (2) | 0.069 (3) | 0.0322 (18) | 0.020 (2) | 0.0104 (17) | −0.0167 (18) |
C3 | 0.063 (2) | 0.088 (3) | 0.053 (2) | −0.036 (2) | −0.0059 (19) | −0.026 (2) |
C4 | 0.047 (2) | 0.091 (3) | 0.0240 (17) | 0.013 (2) | −0.0014 (15) | −0.0020 (18) |
C5 | 0.0262 (14) | 0.0211 (14) | 0.0352 (16) | 0.0072 (12) | 0.0071 (12) | 0.0045 (13) |
C6 | 0.0375 (16) | 0.0343 (17) | 0.0347 (17) | 0.0114 (14) | 0.0097 (14) | 0.0008 (14) |
C7 | 0.054 (2) | 0.0396 (19) | 0.0324 (17) | 0.0204 (16) | 0.0039 (15) | 0.0047 (15) |
C8 | 0.0272 (16) | 0.0332 (18) | 0.076 (3) | 0.0023 (14) | 0.0138 (16) | −0.0061 (17) |
C9 | 0.0296 (15) | 0.0264 (16) | 0.0399 (17) | −0.0114 (13) | 0.0086 (13) | 0.0069 (14) |
C10 | 0.073 (3) | 0.063 (2) | 0.057 (2) | −0.033 (2) | −0.008 (2) | 0.030 (2) |
C11 | 0.072 (3) | 0.049 (2) | 0.060 (2) | −0.028 (2) | 0.015 (2) | −0.0103 (19) |
C12 | 0.0363 (19) | 0.051 (2) | 0.137 (4) | −0.0139 (18) | 0.027 (2) | 0.021 (3) |
S2 | 0.0219 (3) | 0.0236 (4) | 0.0301 (4) | 0.0002 (3) | 0.0046 (3) | −0.0017 (3) |
Si2 | 0.0227 (4) | 0.0215 (4) | 0.0199 (4) | 0.0040 (3) | 0.0049 (3) | −0.0008 (3) |
O4 | 0.0289 (10) | 0.0335 (11) | 0.0208 (10) | 0.0077 (9) | −0.0026 (8) | −0.0002 (9) |
O5 | 0.0376 (11) | 0.0216 (10) | 0.0378 (12) | −0.0063 (9) | 0.0168 (9) | −0.0036 (9) |
O6 | 0.0428 (12) | 0.0355 (12) | 0.0250 (10) | 0.0195 (10) | 0.0032 (9) | −0.0034 (9) |
C13 | 0.0307 (15) | 0.0506 (19) | 0.0217 (15) | 0.0130 (14) | 0.0006 (12) | 0.0056 (14) |
C14 | 0.0428 (19) | 0.077 (3) | 0.0389 (19) | 0.0078 (18) | 0.0116 (16) | 0.0254 (19) |
C15 | 0.0415 (18) | 0.064 (2) | 0.0351 (18) | 0.0239 (17) | 0.0062 (15) | 0.0184 (17) |
C16 | 0.059 (2) | 0.083 (3) | 0.0257 (17) | 0.013 (2) | −0.0085 (16) | −0.0033 (18) |
C17 | 0.0470 (18) | 0.0211 (15) | 0.0411 (18) | −0.0124 (13) | 0.0158 (15) | −0.0007 (13) |
C18 | 0.060 (2) | 0.055 (2) | 0.069 (3) | −0.0186 (19) | 0.017 (2) | −0.021 (2) |
C19 | 0.119 (4) | 0.060 (3) | 0.095 (4) | −0.049 (3) | −0.050 (3) | 0.049 (3) |
C20 | 0.064 (2) | 0.051 (2) | 0.119 (4) | −0.020 (2) | 0.047 (3) | −0.004 (2) |
C21 | 0.0326 (16) | 0.0345 (17) | 0.0359 (17) | 0.0169 (14) | −0.0052 (13) | −0.0168 (14) |
C22 | 0.0457 (19) | 0.047 (2) | 0.049 (2) | 0.0105 (16) | −0.0014 (16) | −0.0230 (17) |
C23 | 0.056 (2) | 0.042 (2) | 0.055 (2) | 0.0265 (17) | −0.0198 (17) | −0.0226 (17) |
C24 | 0.0380 (18) | 0.062 (2) | 0.046 (2) | 0.0076 (17) | 0.0101 (15) | −0.0189 (18) |
N1 | 0.0226 (12) | 0.0240 (12) | 0.0279 (13) | 0.0002 (11) | 0.0069 (10) | 0.0001 (11) |
N2 | 0.0261 (13) | 0.0430 (16) | 0.0310 (14) | 0.0058 (12) | 0.0058 (11) | −0.0021 (13) |
S1—Si1 | 2.0586 (10) | O4—C13 | 1.437 (3) |
Si1—O1 | 1.6194 (18) | O5—C17 | 1.452 (3) |
Si1—O2 | 1.6439 (18) | O6—C21 | 1.450 (3) |
Si1—O3 | 1.6570 (17) | C13—C14 | 1.514 (4) |
O1—C1 | 1.439 (3) | C13—C15 | 1.515 (4) |
O2—C5 | 1.452 (3) | C13—C16 | 1.516 (4) |
O3—C9 | 1.454 (3) | C14—H14A | 0.98 |
C1—C3 | 1.514 (5) | C14—H14B | 0.98 |
C1—C2 | 1.514 (4) | C14—H14C | 0.98 |
C1—C4 | 1.523 (5) | C15—H15A | 0.98 |
C2—H2A | 0.98 | C15—H15B | 0.98 |
C2—H2B | 0.98 | C15—H15C | 0.98 |
C2—H2C | 0.98 | C16—H16A | 0.98 |
C3—H3A | 0.98 | C16—H16B | 0.98 |
C3—H3B | 0.98 | C16—H16C | 0.98 |
C3—H3C | 0.98 | C17—C19 | 1.471 (5) |
C4—H4A | 0.98 | C17—C20 | 1.507 (4) |
C4—H4B | 0.98 | C17—C18 | 1.534 (4) |
C4—H4C | 0.98 | C18—H18A | 0.98 |
C5—C8 | 1.509 (4) | C18—H18B | 0.98 |
C5—C7 | 1.515 (4) | C18—H18C | 0.98 |
C5—C6 | 1.517 (4) | C19—H19A | 0.98 |
C6—H6A | 0.98 | C19—H19B | 0.98 |
C6—H6B | 0.98 | C19—H19C | 0.98 |
C6—H6C | 0.98 | C20—H20A | 0.98 |
C7—H7A | 0.98 | C20—H20B | 0.98 |
C7—H7B | 0.98 | C20—H20C | 0.98 |
C7—H7C | 0.98 | C21—C23 | 1.511 (4) |
C8—H8A | 0.98 | C21—C24 | 1.514 (5) |
C8—H8B | 0.98 | C21—C22 | 1.517 (4) |
C8—H8C | 0.98 | C22—H22A | 0.98 |
C9—C10 | 1.472 (4) | C22—H22B | 0.98 |
C9—C12 | 1.517 (4) | C22—H22C | 0.98 |
C9—C11 | 1.539 (4) | C23—H23A | 0.98 |
C10—H10A | 0.98 | C23—H23B | 0.98 |
C10—H10B | 0.98 | C23—H23C | 0.98 |
C10—H10C | 0.98 | C24—H24A | 0.98 |
C11—H11A | 0.98 | C24—H24B | 0.98 |
C11—H11B | 0.98 | C24—H24C | 0.98 |
C11—H11C | 0.98 | N1—H1A | 0.903 (17) |
C12—H12A | 0.98 | N1—H1B | 0.891 (17) |
C12—H12B | 0.98 | N1—H1C | 0.899 (18) |
C12—H12C | 0.98 | N1—H1D | 0.893 (17) |
S2—Si2 | 2.0619 (10) | N2—H2E | 0.902 (19) |
Si2—O6 | 1.6253 (19) | N2—H2D | 0.877 (19) |
Si2—O4 | 1.6279 (19) | N2—H2F | 0.897 (18) |
Si2—O5 | 1.6440 (18) | N2—H2G | 0.867 (18) |
O1—Si1—O2 | 104.88 (9) | C13—O4—Si2 | 134.46 (17) |
O1—Si1—O3 | 111.58 (9) | C17—O5—Si2 | 131.38 (17) |
O2—Si1—O3 | 103.72 (9) | C21—O6—Si2 | 133.17 (18) |
O1—Si1—S1 | 116.94 (8) | O4—C13—C14 | 108.4 (2) |
O2—Si1—S1 | 114.76 (7) | O4—C13—C15 | 110.9 (2) |
O3—Si1—S1 | 104.31 (7) | C14—C13—C15 | 110.7 (3) |
C1—O1—Si1 | 135.56 (18) | O4—C13—C16 | 105.3 (3) |
C5—O2—Si1 | 131.79 (16) | C14—C13—C16 | 111.0 (3) |
C9—O3—Si1 | 130.88 (16) | C15—C13—C16 | 110.3 (3) |
O1—C1—C3 | 108.7 (3) | C13—C14—H14A | 109.5 |
O1—C1—C2 | 109.6 (2) | C13—C14—H14B | 109.5 |
C3—C1—C2 | 112.0 (3) | H14A—C14—H14B | 109.5 |
O1—C1—C4 | 104.9 (3) | C13—C14—H14C | 109.5 |
C3—C1—C4 | 111.0 (3) | H14A—C14—H14C | 109.5 |
C2—C1—C4 | 110.4 (3) | H14B—C14—H14C | 109.5 |
C1—C2—H2A | 109.5 | C13—C15—H15A | 109.5 |
C1—C2—H2B | 109.5 | C13—C15—H15B | 109.5 |
H2A—C2—H2B | 109.5 | H15A—C15—H15B | 109.5 |
C1—C2—H2C | 109.5 | C13—C15—H15C | 109.5 |
H2A—C2—H2C | 109.5 | H15A—C15—H15C | 109.5 |
H2B—C2—H2C | 109.5 | H15B—C15—H15C | 109.5 |
C1—C3—H3A | 109.5 | C13—C16—H16A | 109.5 |
C1—C3—H3B | 109.5 | C13—C16—H16B | 109.5 |
H3A—C3—H3B | 109.5 | H16A—C16—H16B | 109.5 |
C1—C3—H3C | 109.5 | C13—C16—H16C | 109.5 |
H3A—C3—H3C | 109.5 | H16A—C16—H16C | 109.5 |
H3B—C3—H3C | 109.5 | H16B—C16—H16C | 109.5 |
C1—C4—H4A | 109.5 | O5—C17—C19 | 109.0 (3) |
C1—C4—H4B | 109.5 | O5—C17—C20 | 106.0 (2) |
H4A—C4—H4B | 109.5 | C19—C17—C20 | 111.8 (4) |
C1—C4—H4C | 109.5 | O5—C17—C18 | 112.1 (2) |
H4A—C4—H4C | 109.5 | C19—C17—C18 | 112.2 (3) |
H4B—C4—H4C | 109.5 | C20—C17—C18 | 105.7 (3) |
O2—C5—C8 | 110.0 (2) | C17—C18—H18A | 109.5 |
O2—C5—C7 | 110.2 (2) | C17—C18—H18B | 109.5 |
C8—C5—C7 | 111.5 (3) | H18A—C18—H18B | 109.5 |
O2—C5—C6 | 105.0 (2) | C17—C18—H18C | 109.5 |
C8—C5—C6 | 110.3 (2) | H18A—C18—H18C | 109.5 |
C7—C5—C6 | 109.7 (2) | H18B—C18—H18C | 109.5 |
C5—C6—H6A | 109.5 | C17—C19—H19A | 109.5 |
C5—C6—H6B | 109.5 | C17—C19—H19B | 109.5 |
H6A—C6—H6B | 109.5 | H19A—C19—H19B | 109.5 |
C5—C6—H6C | 109.5 | C17—C19—H19C | 109.5 |
H6A—C6—H6C | 109.5 | H19A—C19—H19C | 109.5 |
H6B—C6—H6C | 109.5 | H19B—C19—H19C | 109.5 |
C5—C7—H7A | 109.5 | C17—C20—H20A | 109.5 |
C5—C7—H7B | 109.5 | C17—C20—H20B | 109.5 |
H7A—C7—H7B | 109.5 | H20A—C20—H20B | 109.5 |
C5—C7—H7C | 109.5 | C17—C20—H20C | 109.5 |
H7A—C7—H7C | 109.5 | H20A—C20—H20C | 109.5 |
H7B—C7—H7C | 109.5 | H20B—C20—H20C | 109.5 |
C5—C8—H8A | 109.5 | O6—C21—C23 | 104.3 (2) |
C5—C8—H8B | 109.5 | O6—C21—C24 | 110.7 (2) |
H8A—C8—H8B | 109.5 | C23—C21—C24 | 111.6 (3) |
C5—C8—H8C | 109.5 | O6—C21—C22 | 109.6 (2) |
H8A—C8—H8C | 109.5 | C23—C21—C22 | 110.6 (3) |
H8B—C8—H8C | 109.5 | C24—C21—C22 | 109.9 (3) |
O3—C9—C10 | 112.2 (2) | C21—C22—H22A | 109.5 |
O3—C9—C12 | 105.8 (2) | C21—C22—H22B | 109.5 |
C10—C9—C12 | 112.4 (3) | H22A—C22—H22B | 109.5 |
O3—C9—C11 | 107.4 (2) | C21—C22—H22C | 109.5 |
C10—C9—C11 | 111.8 (3) | H22A—C22—H22C | 109.5 |
C12—C9—C11 | 106.9 (3) | H22B—C22—H22C | 109.5 |
C9—C10—H10A | 109.5 | C21—C23—H23A | 109.5 |
C9—C10—H10B | 109.5 | C21—C23—H23B | 109.5 |
H10A—C10—H10B | 109.5 | H23A—C23—H23B | 109.5 |
C9—C10—H10C | 109.5 | C21—C23—H23C | 109.5 |
H10A—C10—H10C | 109.5 | H23A—C23—H23C | 109.5 |
H10B—C10—H10C | 109.5 | H23B—C23—H23C | 109.5 |
C9—C11—H11A | 109.5 | C21—C24—H24A | 109.5 |
C9—C11—H11B | 109.5 | C21—C24—H24B | 109.5 |
H11A—C11—H11B | 109.5 | H24A—C24—H24B | 109.5 |
C9—C11—H11C | 109.5 | C21—C24—H24C | 109.5 |
H11A—C11—H11C | 109.5 | H24A—C24—H24C | 109.5 |
H11B—C11—H11C | 109.5 | H24B—C24—H24C | 109.5 |
C9—C12—H12A | 109.5 | H1A—N1—H1B | 114 (3) |
C9—C12—H12B | 109.5 | H1A—N1—H1C | 107 (3) |
H12A—C12—H12B | 109.5 | H1B—N1—H1C | 112 (3) |
C9—C12—H12C | 109.5 | H1A—N1—H1D | 106 (2) |
H12A—C12—H12C | 109.5 | H1B—N1—H1D | 110 (3) |
H12B—C12—H12C | 109.5 | H1C—N1—H1D | 109 (3) |
O6—Si2—O4 | 104.38 (10) | H2E—N2—H2D | 108 (4) |
O6—Si2—O5 | 107.90 (11) | H2E—N2—H2F | 103 (4) |
O4—Si2—O5 | 109.56 (10) | H2D—N2—H2F | 105 (3) |
O6—Si2—S2 | 113.87 (8) | H2E—N2—H2G | 113 (4) |
O4—Si2—S2 | 115.08 (8) | H2D—N2—H2G | 116 (4) |
O5—Si2—S2 | 105.88 (7) | H2F—N2—H2G | 111 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···S1i | 0.90 (2) | 2.33 (2) | 3.223 (2) | 170 (2) |
N1—H1B···S2 | 0.89 (2) | 2.33 (2) | 3.215 (2) | 169 (3) |
N1—H1C···S1 | 0.90 (2) | 2.33 (2) | 3.219 (3) | 172 (3) |
N1—H1D···O2 | 0.89 (2) | 2.49 (2) | 3.059 (3) | 122 (2) |
N2—H2E···S2ii | 0.90 (2) | 2.38 (2) | 3.255 (3) | 162 (4) |
N2—H2D···O3 | 0.88 (2) | 2.01 (2) | 2.886 (3) | 175 (4) |
N2—H2D···S1 | 0.88 (2) | 2.95 (4) | 3.337 (3) | 109 (3) |
N2—H2F···S2 | 0.90 (2) | 2.44 (2) | 3.323 (3) | 171 (3) |
N2—H2G···O5ii | 0.87 (2) | 2.39 (3) | 2.952 (3) | 123 (3) |
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) −x, −y+1, −z+1. |
Experimental details
Crystal data | |
Chemical formula | NH4+·C12H27O3SSi− |
Mr | 297.53 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 120 |
a, b, c (Å) | 11.9981 (4), 12.5580 (5), 24.8181 (12) |
β (°) | 100.336 (4) |
V (Å3) | 3678.7 (3) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 0.24 |
Crystal size (mm) | 0.2 × 0.06 × 0.04 |
Data collection | |
Diffractometer | Oxford Diffraction KM-4 CCD diffractometer |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 12272, 6433, 4509 |
Rint | 0.028 |
(sin θ/λ)max (Å−1) | 0.596 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.048, 0.126, 1.04 |
No. of reflections | 6433 |
No. of parameters | 367 |
No. of restraints | 8 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.72, −0.38 |
Computer programs: CrysAlis CCD (Oxford Diffraction, 2006), CrysAlis RED (Oxford Diffraction, 2006), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 1997), WinGX (Farrugia, 1999).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···S1i | 0.903 (17) | 2.331 (18) | 3.223 (2) | 170 (2) |
N1—H1B···S2 | 0.891 (17) | 2.334 (18) | 3.215 (2) | 169 (3) |
N1—H1C···S1 | 0.899 (18) | 2.326 (19) | 3.219 (3) | 172 (3) |
N1—H1D···O2 | 0.893 (17) | 2.49 (2) | 3.059 (3) | 122 (2) |
N2—H2E···S2ii | 0.902 (19) | 2.38 (2) | 3.255 (3) | 162 (4) |
N2—H2D···O3 | 0.877 (19) | 2.01 (2) | 2.886 (3) | 175 (4) |
N2—H2D···S1 | 0.877 (19) | 2.95 (4) | 3.337 (3) | 109 (3) |
N2—H2F···S2 | 0.897 (18) | 2.435 (19) | 3.323 (3) | 171 (3) |
N2—H2G···O5ii | 0.867 (18) | 2.39 (3) | 2.952 (3) | 123 (3) |
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) −x, −y+1, −z+1. |
Acknowledgements
The work was undertaken with financial support from the Polish State Committee, grant No. 3 T09A 12028.
References
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Complexes of trialkoxysilanethiols with ammonia were first obtained in 1971 by the reaction of (iPrO)3SiSH and (sBuO)3SiSH (Wojnowski, 1971) with ammonia but no structural data are available.
Amino tri-tert-butoxysilanethiolates show great structural diversity. Structures of isolated dimers, cubans, chains or sheets have been recognized so far. Cubic motifs were characterized for salts of primary amines (Becker, et al., 2004); for secondary amines dimers and/or chains have been found (Baranowska, Chojnacki, Konitz et al., 2006, Baranowska, Chojnacki, Becker & Wojnowski, 2003).
The asymmetric unit of (I) consists of two silanethiolate anions and two ammonium cations (Fig.1). The ions are connected via N(+)–H···S(-) hydrogen bonds, forming an eight-membered ring as R24(8) with four donors and two acceptors (Etter, 1990; Bernstein et al., 1995). Similar (thiol-amine)2 ring formation has been observed in other ammonium salts (Baranowska, Chojnacki, Konitz et al., 2006; Baranowska, Chojnacki, Wojnowski & Becker, 2003). These rings are futher linked by N–H···S and N–H···O hydrogen bonds into chains parallel to the (010) (Fig.2). The application of graph theory to the chain results in a variety of possible hydrogen bonding patterns: the N1–H1C···S1, N1–H1A···S1(i), N1–H1C···S1(i) and N1–H1A···S1 hydrogen bonds form an R24(8)ring, the N2–H2E···S2(ii), N2–H2F···S2(ii), N2–H2F···S2 and N2–H2E···S2 hydrogen bonds form an R24(8) ring, the N1–H1C···S1and N1–H1D···O2 hydrogen bonds form an R22(6) ring, the N2–H2G···O5(ii)and N2–H2E···S2(ii) hydrogen bonds form an R12(6) ring, the N1–H1B···S2, N2–H2F···S2, N1–H1C···S1 and N2–H2D···S1 hydrogen bonds form an R24(8) ring, in which atom N2 acts as a bifurcated donor.
The N···S distances in (I) lie in the range 2.886 (3)–3.340 (3) Å, comparable with values observed in other silanethiolates (Baranowska, Chojnacki, Gosiewska & Wojnowski 2006; Pladzyk & Baranowska, 2007; Dołęga et al., 2008) or aromatic thiolates (Baranowska, Chojnacki, Becker & Wojnowski, 2003; Baranowska, 2007). The length of silicon – sulfur bond is short (2.059 – 2.062 Å) and it is characteristic for ionic silanethiolates (Becker et al., 2002, Chojnacki, 2008). Hydrogen bonds are grouped in " hydrophilic" core, while the organic hydrocarbon groups form "hydrophobic" coat in the crystal. It is a very characteristic motif for many polimeric structures.