metal-organic compounds
Hydrogen-bonding and π–π stacking interactions in tris(1,10-phenanthroline-κ2N,N′)nickel(II) bis{[1-tert-butylimidazole-2(3H)-thione-κS]trichloridonickelate(II)} acetonitrile disolvate
aDepartment of Chemistry, Indian Institute of Technology Roorkee, Roorkee 247667, India
*Correspondence e-mail: udaipfcy@iitr.ernet.in
The 12H8N2)3][NiCl3(C7H12N2S)]2·2CH3CN, consists of one anion, one-half of a cation and one acetonitrile molecule. The NiII atom in the [Ni(phen)3]2+ cation (phen is 1,10-phenanthroline) lies on an inversion centre in an octahedral environment, whereas in the [NiCl3(tm)]− anion [tm is 1-tert-butylimidazole-2(3H)-thione], the geometry is distorted tetrahedral. In the intermolecular C—H⋯Cl hydrogen bonds and π–π stacking interactions (centroid–centroid distance = 3.52 Å) lead to the formation of a three-dimensional framework. One of the methyl groups of the tert-butyl group of N-tert-butyl-2-thioimidazole is disordered between two equally populated positions.
of the title complex, [Ni(CRelated literature
For general background, see: Fatimi et al. (1994); Iradyan et al. (1987); Suescun et al. (1999); Yu et al. (2003); Fang & Dai (2006); Chen et al., (2007); Senda et al. (2006). For synthesis details, see: Kister et al. (1979).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2007); cell SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008) and DIAMOND (Brandenburg, 1999); software used to prepare material for publication: SHELXL97.
Supporting information
10.1107/S1600536808018060/su2050sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536808018060/su2050Isup2.hkl
All the reagents were of commercial grade and were used as received. N-tert-butyl-thioimidazole (tm) was synthesized by a literature method (Kister et al., 1979). To a solution of NiCl2.6H2O (1.0 mmol) in 5 ml methanol, a methanolic solution of N-tert-butyl-2-thioimidazole (1.0 mmol) was added and the mixture stirred for 40 minutes. This mixture was then added to the solution obtained by mixing NiCl2.6H2O (1.0 mmol) in methanol with a methanolic solution of 1,10-phenanthroline (3.0 mmol). The whole reaction mixture was stirred for a further 30 minutes. The clear solution obtained was filtered and evaporated to dryness. The solid compound obtained was dissolved in acetonitrile and green single crystals, suitable for X-ray analysis, were obtained by slow evaporation at room temperature. Yield 62%. Analysis calculated for C50H48N10S2Cl6Ni3: C 48.30, H 3.86, N 11.27, S 5.15%; found: C 48.24, H 3.78, N 11.21, S 5.12%. Selected IR frequencies (KBr, ν, cm-1): 725 (s), 849 (s), 1369 (w), 1575 (m), 1623 (w), 3060 (w), 3412 (s).
One of the methyl groups of the tert-butyl group of N-tert-butyl-2-thioimidazole is disordered between two equally populated positions (C6 and C6A; H6A and H6A1; H6B and H6B1; H6C and H6C1). C-bound H atoms were placed in geometrically idealized positions, with Csp2—H = 0.93 Å and Csp3—H = 0.96 Å, and treated as riding atoms with Uiso(H) = 1.2Ueq(C). H atoms attached to the O atoms were located in a difference Fourier map and refined as riding in their as found positions, with Uiso(H) = 1.5Ueq(O).
Data collection: APEX2 (Bruker, 2007); cell
SAINT (Bruker, 2007); data reduction: SAINT (Bruker, 2007); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008) and DIAMOND (Brandenburg, 1999); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).Fig. 1. The molecular structure of the compound (I), shown with 30% probability displacement ellipsoids [H atoms have been omitted for clarity; Symmetry code: (i) -x, y, 0.5 - z.] | |
Fig. 2. A view of the intermolecular C—H···Cl interactions involving the [Ni(phen)3]+ cation. | |
Fig. 3. A view of the intermolecular π–π stacking and C—H···Cl interactions involving the [Ni(tm)(Cl)3]- anion. | |
Fig. 4. A view along the b axis of the crystal packing of complex (I), showing the interaction between two layers. |
[Ni(C12H8N2)3][NiCl3(C7H12N2S)]2·2C2H3N | F(000) = 2720 |
Mr = 1324.04 | Dx = 1.511 Mg m−3 |
Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -C 2yc | Cell parameters from 5736 reflections |
a = 22.8953 (15) Å | θ = 1.7–25.1° |
b = 15.2934 (10) Å | µ = 1.36 mm−1 |
c = 19.9417 (19) Å | T = 298 K |
β = 123.543 (3)° | Block, green |
V = 5819.7 (8) Å3 | 0.24 × 0.20 × 0.18 mm |
Z = 4 |
Bruker Kappa APEXII CCD area-detector diffractometer | 5178 independent reflections |
Radiation source: fine-focus sealed tube | 3346 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.076 |
ϕ and ω scans | θmax = 25.1°, θmin = 1.7° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −26→26 |
Tmin = 0.737, Tmax = 0.792 | k = −17→17 |
30921 measured reflections | l = −22→22 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.050 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.157 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.07 | w = 1/[σ2(Fo2) + (0.0987P)2 + 2.7947P] where P = (Fo2 + 2Fc2)/3 |
5178 reflections | (Δ/σ)max < 0.001 |
370 parameters | Δρmax = 1.24 e Å−3 |
3 restraints | Δρmin = −0.55 e Å−3 |
[Ni(C12H8N2)3][NiCl3(C7H12N2S)]2·2C2H3N | V = 5819.7 (8) Å3 |
Mr = 1324.04 | Z = 4 |
Monoclinic, C2/c | Mo Kα radiation |
a = 22.8953 (15) Å | µ = 1.36 mm−1 |
b = 15.2934 (10) Å | T = 298 K |
c = 19.9417 (19) Å | 0.24 × 0.20 × 0.18 mm |
β = 123.543 (3)° |
Bruker Kappa APEXII CCD area-detector diffractometer | 5178 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 3346 reflections with I > 2σ(I) |
Tmin = 0.737, Tmax = 0.792 | Rint = 0.076 |
30921 measured reflections |
R[F2 > 2σ(F2)] = 0.050 | 3 restraints |
wR(F2) = 0.157 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.07 | Δρmax = 1.24 e Å−3 |
5178 reflections | Δρmin = −0.55 e Å−3 |
370 parameters |
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell esds are taken into account in the estimation of distances, angles and torsion angles |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
Ni1 | 0.00000 | 0.00042 (5) | 0.25000 | 0.0324 (3) | |
N1 | 0.0571 (2) | 0.1054 (2) | 0.3259 (2) | 0.0353 (12) | |
N2 | 0.0560 (2) | −0.0924 (2) | 0.3397 (2) | 0.0402 (12) | |
N3 | 0.0611 (2) | −0.0069 (3) | 0.2013 (2) | 0.0394 (12) | |
C8 | 0.1142 (3) | 0.1047 (4) | 0.3998 (3) | 0.0432 (17) | |
C9 | 0.1465 (3) | 0.1812 (4) | 0.4422 (3) | 0.0543 (19) | |
C10 | 0.1193 (3) | 0.2601 (4) | 0.4082 (4) | 0.060 (2) | |
C11 | 0.0597 (3) | 0.2640 (3) | 0.3294 (3) | 0.048 (2) | |
C12 | 0.0304 (2) | 0.1842 (3) | 0.2905 (3) | 0.0359 (17) | |
C13 | 0.0280 (3) | 0.3432 (4) | 0.2882 (4) | 0.065 (3) | |
C14 | 0.1128 (3) | −0.1368 (3) | 0.3578 (3) | 0.0534 (19) | |
C15 | 0.1476 (4) | −0.1940 (4) | 0.4220 (4) | 0.069 (2) | |
C16 | 0.1245 (4) | −0.2030 (4) | 0.4708 (4) | 0.071 (2) | |
C17 | 0.0649 (3) | −0.1584 (3) | 0.4557 (3) | 0.0542 (19) | |
C18 | 0.0313 (3) | −0.1036 (3) | 0.3870 (3) | 0.0424 (17) | |
C19 | 0.1208 (3) | 0.0335 (4) | 0.2245 (3) | 0.0503 (17) | |
C20 | 0.1528 (3) | 0.0259 (4) | 0.1814 (4) | 0.066 (3) | |
C21 | 0.1223 (4) | −0.0231 (5) | 0.1145 (4) | 0.068 (3) | |
C22 | 0.0604 (3) | −0.0683 (4) | 0.0887 (4) | 0.058 (2) | |
C23 | 0.0315 (3) | −0.0582 (3) | 0.1348 (3) | 0.0410 (17) | |
C24 | 0.0231 (4) | −0.1241 (5) | 0.0183 (4) | 0.072 (3) | |
C25 | −0.0359 (4) | −0.1657 (4) | −0.0022 (4) | 0.071 (3) | |
Ni2 | 0.29979 (3) | 0.96924 (4) | 0.47969 (4) | 0.0434 (2) | |
Cl1 | 0.25801 (8) | 0.97552 (11) | 0.55872 (9) | 0.0625 (6) | |
Cl2 | 0.27465 (7) | 0.88260 (10) | 0.37416 (8) | 0.0583 (5) | |
Cl3 | 0.27772 (7) | 1.10207 (9) | 0.42193 (8) | 0.0528 (5) | |
S1 | 0.41282 (7) | 0.93790 (9) | 0.58439 (8) | 0.0452 (4) | |
N4 | 0.4404 (2) | 0.8996 (3) | 0.4710 (3) | 0.0408 (16) | |
N5 | 0.5332 (2) | 0.8910 (3) | 0.5920 (2) | 0.0381 (12) | |
C1 | 0.4636 (3) | 0.9081 (3) | 0.5493 (3) | 0.0359 (17) | |
C2 | 0.5514 (3) | 0.8728 (4) | 0.5376 (3) | 0.0479 (19) | |
C3 | 0.4945 (3) | 0.8778 (4) | 0.4641 (3) | 0.0481 (17) | |
C4 | 0.5832 (3) | 0.8870 (4) | 0.6823 (3) | 0.0452 (17) | |
C5 | 0.5869 (4) | 0.9750 (4) | 0.7181 (4) | 0.089 (3) | |
C6 | 0.6584 (6) | 0.8705 (16) | 0.7056 (9) | 0.093 (6) | 0.75 (3) |
C7 | 0.5581 (4) | 0.8178 (5) | 0.7141 (4) | 0.077 (3) | |
C6A | 0.643 (2) | 0.830 (4) | 0.695 (3) | 0.093 (6) | 0.25 (3) |
N6 | 0.3858 (4) | 0.7541 (4) | 0.3045 (4) | 0.091 (3) | |
C26 | 0.3366 (4) | 0.7841 (4) | 0.2533 (4) | 0.066 (3) | |
C27 | 0.2734 (4) | 0.8224 (5) | 0.1875 (5) | 0.093 (3) | |
H8 | 0.13350 | 0.05120 | 0.42420 | 0.0520* | |
H9 | 0.18670 | 0.17810 | 0.49400 | 0.0650* | |
H10 | 0.14000 | 0.31130 | 0.43680 | 0.0720* | |
H13 | 0.04640 | 0.39620 | 0.31450 | 0.0780* | |
H14 | 0.13000 | −0.12900 | 0.32550 | 0.0640* | |
H15 | 0.18620 | −0.22550 | 0.43130 | 0.0830* | |
H16 | 0.14870 | −0.23950 | 0.51540 | 0.0860* | |
H19 | 0.14210 | 0.06790 | 0.27070 | 0.0600* | |
H20 | 0.19480 | 0.05460 | 0.19920 | 0.0790* | |
H21 | 0.14270 | −0.02700 | 0.08520 | 0.0810* | |
H24 | 0.04090 | −0.13130 | −0.01350 | 0.0870* | |
H25 | −0.05840 | −0.20020 | −0.04830 | 0.0850* | |
H2 | 0.593 (3) | 0.867 (3) | 0.555 (3) | 0.036 (14)* | |
H3 | 0.486 (3) | 0.868 (4) | 0.409 (4) | 0.061 (16)* | |
H5A | 0.59570 | 1.01920 | 0.69050 | 0.1340* | |
H5B | 0.62410 | 0.97510 | 0.77410 | 0.1340* | |
H4 | 0.397 (3) | 0.897 (3) | 0.435 (3) | 0.039 (15)* | |
H6A | 0.67440 | 0.92000 | 0.69040 | 0.1380* | 0.75 (3) |
H6B | 0.65930 | 0.81930 | 0.67830 | 0.1380* | 0.75 (3) |
H6C | 0.68860 | 0.86190 | 0.76270 | 0.1380* | 0.75 (3) |
H7A | 0.50960 | 0.82750 | 0.69350 | 0.1160* | |
H7B | 0.58520 | 0.82040 | 0.77180 | 0.1160* | |
H7C | 0.56360 | 0.76130 | 0.69730 | 0.1160* | |
H5C | 0.54330 | 0.98700 | 0.71250 | 0.1340* | |
H6A1 | 0.66990 | 0.86260 | 0.67940 | 0.1380* | 0.25 (3) |
H6A2 | 0.62430 | 0.77870 | 0.66220 | 0.1380* | 0.25 (3) |
H6A3 | 0.67260 | 0.81410 | 0.75030 | 0.1380* | 0.25 (3) |
H27A | 0.24970 | 0.85310 | 0.20790 | 0.1400* | |
H27B | 0.24340 | 0.77720 | 0.15140 | 0.1400* | |
H27C | 0.28470 | 0.86250 | 0.15930 | 0.1400* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Ni1 | 0.0334 (5) | 0.0360 (5) | 0.0257 (5) | 0.0000 | 0.0151 (4) | 0.0000 |
N1 | 0.035 (2) | 0.042 (2) | 0.028 (2) | 0.0003 (18) | 0.0168 (19) | −0.0034 (18) |
N2 | 0.042 (2) | 0.035 (2) | 0.034 (2) | −0.0035 (19) | 0.015 (2) | 0.0018 (17) |
N3 | 0.039 (2) | 0.042 (2) | 0.036 (2) | −0.0011 (19) | 0.020 (2) | −0.0032 (18) |
C8 | 0.035 (3) | 0.060 (3) | 0.030 (3) | −0.001 (2) | 0.015 (2) | −0.005 (2) |
C9 | 0.046 (3) | 0.081 (4) | 0.034 (3) | −0.016 (3) | 0.021 (3) | −0.019 (3) |
C10 | 0.077 (4) | 0.062 (4) | 0.055 (4) | −0.023 (3) | 0.045 (4) | −0.029 (3) |
C11 | 0.062 (4) | 0.046 (3) | 0.051 (4) | −0.010 (3) | 0.041 (3) | −0.014 (3) |
C12 | 0.043 (3) | 0.040 (3) | 0.035 (3) | −0.003 (2) | 0.028 (2) | −0.004 (2) |
C13 | 0.092 (5) | 0.039 (3) | 0.087 (5) | −0.016 (3) | 0.064 (4) | −0.015 (3) |
C14 | 0.042 (3) | 0.043 (3) | 0.057 (4) | 0.007 (3) | 0.016 (3) | −0.001 (3) |
C15 | 0.062 (4) | 0.050 (4) | 0.063 (4) | 0.008 (3) | 0.014 (4) | 0.007 (3) |
C16 | 0.069 (4) | 0.043 (3) | 0.046 (4) | 0.000 (3) | −0.003 (3) | 0.014 (3) |
C17 | 0.063 (4) | 0.039 (3) | 0.034 (3) | −0.014 (3) | 0.010 (3) | 0.005 (2) |
C18 | 0.047 (3) | 0.033 (3) | 0.035 (3) | −0.009 (2) | 0.015 (3) | −0.001 (2) |
C19 | 0.044 (3) | 0.057 (3) | 0.051 (3) | −0.001 (3) | 0.027 (3) | −0.002 (3) |
C20 | 0.053 (4) | 0.085 (5) | 0.078 (5) | 0.008 (3) | 0.047 (4) | 0.015 (4) |
C21 | 0.074 (5) | 0.091 (5) | 0.064 (5) | 0.021 (4) | 0.054 (4) | 0.018 (4) |
C22 | 0.077 (4) | 0.059 (3) | 0.051 (4) | 0.034 (3) | 0.043 (3) | 0.016 (3) |
C23 | 0.049 (3) | 0.040 (3) | 0.034 (3) | 0.014 (2) | 0.023 (3) | 0.005 (2) |
C24 | 0.105 (6) | 0.078 (4) | 0.051 (4) | 0.027 (4) | 0.054 (4) | 0.000 (3) |
C25 | 0.104 (6) | 0.059 (4) | 0.041 (4) | 0.022 (4) | 0.035 (4) | −0.005 (3) |
Ni2 | 0.0394 (4) | 0.0561 (4) | 0.0325 (4) | 0.0045 (3) | 0.0185 (3) | −0.0031 (3) |
Cl1 | 0.0540 (9) | 0.0980 (12) | 0.0409 (8) | 0.0098 (8) | 0.0297 (7) | 0.0020 (7) |
Cl2 | 0.0496 (8) | 0.0748 (10) | 0.0400 (8) | 0.0050 (7) | 0.0181 (7) | −0.0152 (7) |
Cl3 | 0.0476 (8) | 0.0590 (8) | 0.0495 (9) | −0.0008 (6) | 0.0254 (7) | 0.0015 (6) |
S1 | 0.0413 (7) | 0.0626 (8) | 0.0318 (7) | 0.0068 (6) | 0.0203 (6) | −0.0018 (6) |
N4 | 0.042 (3) | 0.053 (3) | 0.026 (2) | 0.000 (2) | 0.018 (2) | −0.0013 (19) |
N5 | 0.039 (2) | 0.051 (2) | 0.026 (2) | 0.0010 (19) | 0.019 (2) | 0.0021 (18) |
C1 | 0.041 (3) | 0.040 (3) | 0.027 (3) | −0.001 (2) | 0.019 (2) | 0.002 (2) |
C2 | 0.039 (3) | 0.067 (4) | 0.043 (3) | −0.004 (3) | 0.026 (3) | −0.003 (3) |
C3 | 0.051 (3) | 0.061 (3) | 0.040 (3) | −0.003 (3) | 0.030 (3) | 0.000 (3) |
C4 | 0.040 (3) | 0.065 (3) | 0.029 (3) | 0.004 (3) | 0.018 (2) | 0.006 (2) |
C5 | 0.096 (6) | 0.076 (5) | 0.040 (4) | −0.009 (4) | 0.003 (4) | −0.008 (3) |
C6 | 0.036 (6) | 0.183 (16) | 0.043 (6) | 0.002 (7) | 0.012 (6) | 0.004 (9) |
C7 | 0.080 (5) | 0.091 (5) | 0.050 (4) | −0.001 (4) | 0.029 (4) | 0.023 (3) |
C6A | 0.036 (6) | 0.183 (16) | 0.043 (6) | 0.002 (7) | 0.012 (6) | 0.004 (9) |
N6 | 0.103 (5) | 0.105 (5) | 0.062 (4) | 0.008 (4) | 0.043 (4) | 0.005 (4) |
C26 | 0.088 (5) | 0.066 (4) | 0.054 (4) | −0.010 (4) | 0.045 (4) | −0.002 (3) |
C27 | 0.099 (6) | 0.080 (5) | 0.073 (5) | 0.004 (4) | 0.030 (5) | 0.006 (4) |
Ni1—N1 | 2.095 (3) | C21—C22 | 1.395 (12) |
Ni1—N2 | 2.079 (3) | C22—C24 | 1.450 (10) |
Ni1—N3 | 2.101 (5) | C22—C23 | 1.407 (10) |
Ni1—N1i | 2.095 (3) | C24—C25 | 1.337 (13) |
Ni1—N2i | 2.079 (3) | C8—H8 | 0.9300 |
Ni1—N3i | 2.101 (5) | C9—H9 | 0.9300 |
Ni2—Cl2 | 2.2753 (16) | C10—H10 | 0.9300 |
Ni2—Cl3 | 2.2507 (15) | C13—H13 | 0.9300 |
Ni2—S1 | 2.3054 (17) | C14—H14 | 0.9300 |
Ni2—Cl1 | 2.253 (2) | C15—H15 | 0.9300 |
S1—C1 | 1.717 (7) | C16—H16 | 0.9300 |
N1—C8 | 1.324 (7) | C19—H19 | 0.9300 |
N1—C12 | 1.359 (6) | C20—H20 | 0.9300 |
N2—C18 | 1.352 (8) | C21—H21 | 0.9300 |
N2—C14 | 1.328 (8) | C24—H24 | 0.9300 |
N3—C23 | 1.357 (6) | C25—H25 | 0.9300 |
N3—C19 | 1.329 (9) | C2—C3 | 1.320 (8) |
N4—C1 | 1.349 (7) | C4—C5 | 1.504 (9) |
N4—C3 | 1.361 (9) | C4—C6A | 1.52 (6) |
N5—C1 | 1.354 (8) | C4—C6 | 1.536 (19) |
N5—C2 | 1.388 (8) | C4—C7 | 1.502 (11) |
N5—C4 | 1.510 (6) | C2—H2 | 0.82 (7) |
N4—H4 | 0.85 (6) | C3—H3 | 1.02 (7) |
N6—C26 | 1.118 (11) | C5—H5A | 0.9600 |
C8—C9 | 1.393 (8) | C5—H5B | 0.9600 |
C9—C10 | 1.355 (9) | C5—H5C | 0.9600 |
C10—C11 | 1.402 (9) | C6—H6A | 0.9600 |
C11—C12 | 1.402 (7) | C6—H6B | 0.9600 |
C11—C13 | 1.418 (8) | C6—H6C | 0.9600 |
C12—C12i | 1.436 (7) | C6A—H6A2 | 0.9600 |
C13—C13i | 1.344 (10) | C6A—H6A3 | 0.9500 |
C14—C15 | 1.383 (8) | C6A—H6A1 | 0.9700 |
C15—C16 | 1.347 (13) | C7—H7B | 0.9600 |
C16—C17 | 1.401 (12) | C7—H7C | 0.9600 |
C17—C18 | 1.417 (7) | C7—H7A | 0.9600 |
C17—C25i | 1.412 (12) | C26—C27 | 1.435 (12) |
C18—C23i | 1.431 (10) | C27—H27A | 0.9600 |
C19—C20 | 1.409 (10) | C27—H27B | 0.9600 |
C20—C21 | 1.341 (10) | C27—H27C | 0.9600 |
N1—Ni1—N2 | 93.42 (13) | C8—C9—H9 | 120.00 |
N1—Ni1—N3 | 93.77 (18) | C11—C10—H10 | 120.00 |
N1—Ni1—N1i | 79.98 (13) | C9—C10—H10 | 120.00 |
N1—Ni1—N2i | 170.55 (15) | C13i—C13—H13 | 119.00 |
N1—Ni1—N3i | 90.91 (18) | C11—C13—H13 | 119.00 |
N2—Ni1—N3 | 96.30 (18) | N2—C14—H14 | 118.00 |
N1i—Ni1—N2 | 170.55 (15) | C15—C14—H14 | 118.00 |
N2—Ni1—N2i | 93.90 (13) | C14—C15—H15 | 121.00 |
N2—Ni1—N3i | 79.49 (18) | C16—C15—H15 | 121.00 |
N1i—Ni1—N3 | 90.91 (18) | C17—C16—H16 | 120.00 |
N2i—Ni1—N3 | 79.49 (18) | C15—C16—H16 | 119.00 |
N3—Ni1—N3i | 173.89 (18) | N3—C19—H19 | 119.00 |
N1i—Ni1—N2i | 93.42 (13) | C20—C19—H19 | 119.00 |
N1i—Ni1—N3i | 93.77 (18) | C19—C20—H20 | 120.00 |
N2i—Ni1—N3i | 96.30 (18) | C21—C20—H20 | 120.00 |
Cl1—Ni2—Cl2 | 133.14 (7) | C20—C21—H21 | 120.00 |
Cl1—Ni2—Cl3 | 104.92 (7) | C22—C21—H21 | 120.00 |
Cl1—Ni2—S1 | 94.21 (6) | C25—C24—H24 | 119.00 |
Cl2—Ni2—Cl3 | 100.47 (6) | C22—C24—H24 | 119.00 |
Cl2—Ni2—S1 | 107.47 (6) | C24—C25—H25 | 119.00 |
Cl3—Ni2—S1 | 118.25 (6) | C17i—C25—H25 | 119.00 |
Ni2—S1—C1 | 111.11 (19) | N4—C1—N5 | 106.5 (6) |
Ni1—N1—C8 | 129.5 (3) | S1—C1—N5 | 128.4 (4) |
Ni1—N1—C12 | 112.5 (3) | S1—C1—N4 | 125.1 (5) |
C8—N1—C12 | 118.0 (4) | N5—C2—C3 | 108.5 (6) |
C14—N2—C18 | 118.0 (4) | N4—C3—C2 | 107.3 (6) |
Ni1—N2—C18 | 112.9 (4) | N5—C4—C6 | 110.6 (7) |
Ni1—N2—C14 | 128.9 (4) | N5—C4—C5 | 109.7 (5) |
Ni1—N3—C19 | 129.3 (4) | C5—C4—C6 | 104.1 (10) |
C19—N3—C23 | 118.1 (5) | C5—C4—C7 | 111.4 (6) |
Ni1—N3—C23 | 112.5 (4) | C5—C4—C6A | 129 (2) |
C1—N4—C3 | 110.0 (5) | C6—C4—C7 | 112.5 (10) |
C2—N5—C4 | 124.5 (5) | C6A—C4—C7 | 93 (2) |
C1—N5—C2 | 107.7 (4) | N5—C4—C7 | 108.5 (5) |
C1—N5—C4 | 127.7 (5) | N5—C4—C6A | 104.0 (19) |
C1—N4—H4 | 121 (5) | N5—C2—H2 | 118 (4) |
C3—N4—H4 | 128 (5) | C3—C2—H2 | 133 (4) |
N1—C8—C9 | 122.4 (5) | N4—C3—H3 | 120 (4) |
C8—C9—C10 | 120.1 (5) | C2—C3—H3 | 132 (4) |
C9—C10—C11 | 119.5 (5) | C4—C5—H5A | 109.00 |
C10—C11—C12 | 117.1 (5) | C4—C5—H5B | 110.00 |
C12—C11—C13 | 119.2 (5) | C4—C5—H5C | 110.00 |
C10—C11—C13 | 123.7 (5) | H5A—C5—H5B | 109.00 |
N1—C12—C12i | 117.6 (4) | H5A—C5—H5C | 109.00 |
N1—C12—C11 | 123.0 (5) | H5B—C5—H5C | 109.00 |
C11—C12—C12i | 119.5 (4) | C4—C6—H6A | 110.00 |
C11—C13—C13i | 121.3 (6) | C4—C6—H6B | 110.00 |
N2—C14—C15 | 123.5 (7) | C4—C6—H6C | 109.00 |
C14—C15—C16 | 118.6 (8) | H6A—C6—H6B | 109.00 |
C15—C16—C17 | 121.3 (6) | H6A—C6—H6C | 109.00 |
C16—C17—C18 | 116.1 (6) | H6B—C6—H6C | 109.00 |
C18—C17—C25i | 118.7 (6) | C4—C6A—H6A2 | 110.00 |
C16—C17—C25i | 125.2 (5) | C4—C6A—H6A3 | 110.00 |
N2—C18—C23i | 117.6 (4) | H6A1—C6A—H6A2 | 109.00 |
N2—C18—C17 | 122.5 (6) | H6A1—C6A—H6A3 | 109.00 |
C17—C18—C23i | 119.9 (6) | H6A2—C6A—H6A3 | 110.00 |
N3—C19—C20 | 122.1 (5) | C4—C6A—H6A1 | 109.00 |
C19—C20—C21 | 119.5 (7) | H7B—C7—H7C | 109.00 |
C20—C21—C22 | 120.5 (8) | C4—C7—H7A | 109.00 |
C21—C22—C23 | 117.0 (6) | C4—C7—H7B | 109.00 |
C21—C22—C24 | 125.7 (8) | C4—C7—H7C | 109.00 |
C23—C22—C24 | 117.3 (7) | H7A—C7—H7B | 110.00 |
N3—C23—C18i | 116.9 (6) | H7A—C7—H7C | 110.00 |
C18i—C23—C22 | 120.3 (5) | N6—C26—C27 | 179.9 (12) |
N3—C23—C22 | 122.8 (6) | C26—C27—H27A | 109.00 |
C22—C24—C25 | 122.1 (8) | C26—C27—H27B | 110.00 |
C17i—C25—C24 | 121.6 (6) | C26—C27—H27C | 110.00 |
N1—C8—H8 | 119.00 | H27A—C27—H27B | 109.00 |
C9—C8—H8 | 119.00 | H27A—C27—H27C | 110.00 |
C10—C9—H9 | 120.00 | H27B—C27—H27C | 109.00 |
N2—Ni1—N1—C8 | 8.6 (6) | C1—N5—C2—C3 | −0.6 (7) |
N3—Ni1—N1—C8 | −87.9 (6) | C4—N5—C2—C3 | 176.5 (5) |
N1i—Ni1—N1—C8 | −178.2 (6) | C2—N5—C1—N4 | 0.5 (6) |
N3i—Ni1—N1—C8 | 88.2 (6) | C2—N5—C4—C7 | −117.4 (7) |
N2—Ni1—N1—C12 | −173.1 (4) | C1—N5—C4—C7 | 59.2 (8) |
N3—Ni1—N1—C12 | 90.3 (4) | C4—N5—C1—N4 | −176.5 (5) |
N1i—Ni1—N1—C12 | 0.1 (4) | C2—N5—C1—S1 | −177.8 (4) |
N3i—Ni1—N1—C12 | −93.6 (4) | C2—N5—C4—C5 | 120.8 (7) |
N1—Ni1—N2—C14 | −92.3 (4) | C1—N5—C4—C6 | −176.9 (11) |
N3—Ni1—N2—C14 | 1.9 (4) | C2—N5—C4—C6 | 6.5 (12) |
N2i—Ni1—N2—C14 | 81.7 (4) | N1—C8—C9—C10 | 0.5 (11) |
N3i—Ni1—N2—C14 | 177.4 (4) | C8—C9—C10—C11 | −1.8 (11) |
N1—Ni1—N2—C18 | 84.0 (3) | C9—C10—C11—C12 | 1.4 (11) |
N3—Ni1—N2—C18 | 178.2 (3) | C9—C10—C11—C13 | −179.0 (7) |
N2i—Ni1—N2—C18 | −102.0 (3) | C12—C11—C13—C13i | −2.3 (11) |
N3i—Ni1—N2—C18 | −6.3 (3) | C10—C11—C12—N1 | 0.2 (10) |
N1—Ni1—N3—C19 | 9.7 (5) | C13—C11—C12—C12i | 0.9 (10) |
N2—Ni1—N3—C19 | −84.2 (5) | C10—C11—C12—C12i | −179.6 (6) |
N1i—Ni1—N3—C19 | 89.7 (5) | C13—C11—C12—N1 | −179.4 (6) |
N2i—Ni1—N3—C19 | −177.0 (5) | C10—C11—C13—C13i | 178.1 (8) |
N1—Ni1—N3—C23 | −167.3 (3) | N1—C12—C12i—C11i | −180.0 (6) |
N2—Ni1—N3—C23 | 98.9 (3) | C11—C12—C12i—N1i | −180.0 (6) |
N1i—Ni1—N3—C23 | −87.3 (3) | N1—C12—C12i—N1i | 0.3 (8) |
N2i—Ni1—N3—C23 | 6.1 (3) | C11—C12—C12i—C11i | −0.2 (9) |
Cl3—Ni2—S1—C1 | −81.0 (2) | C11—C13—C13i—C11i | 3.1 (12) |
Cl1—Ni2—S1—C1 | 169.56 (19) | N2—C14—C15—C16 | −2.6 (9) |
Cl2—Ni2—S1—C1 | 31.7 (2) | C14—C15—C16—C17 | 2.5 (10) |
Ni2—S1—C1—N4 | −3.1 (5) | C15—C16—C17—C25i | 178.2 (6) |
Ni2—S1—C1—N5 | 175.0 (4) | C15—C16—C17—C18 | −0.4 (9) |
Ni1—N1—C8—C9 | 179.3 (5) | C18—C17—C25i—C24i | 1.8 (9) |
C8—N1—C12—C12i | 178.3 (6) | C16—C17—C25i—C24i | −176.8 (7) |
Ni1—N1—C12—C11 | −180.0 (5) | C16—C17—C18—C23i | 177.6 (5) |
C12—N1—C8—C9 | 1.1 (10) | C25i—C17—C18—N2 | 179.4 (5) |
Ni1—N1—C12—C12i | −0.2 (6) | C25i—C17—C18—C23i | −1.1 (8) |
C8—N1—C12—C11 | −1.5 (9) | C16—C17—C18—N2 | −1.9 (8) |
Ni1—N2—C18—C23i | 5.6 (5) | C17—C18—C23i—C22i | −0.5 (8) |
C14—N2—C18—C17 | 2.0 (7) | N2—C18—C23i—N3i | −0.4 (7) |
Ni1—N2—C18—C17 | −174.8 (4) | C17—C18—C23i—N3i | −179.9 (5) |
Ni1—N2—C14—C15 | 176.6 (4) | N2—C18—C23i—C22i | 179.0 (5) |
C14—N2—C18—C23i | −177.6 (4) | N3—C19—C20—C21 | 0.4 (10) |
C18—N2—C14—C15 | 0.4 (7) | C19—C20—C21—C22 | −1.8 (10) |
Ni1—N3—C19—C20 | −175.5 (4) | C20—C21—C22—C24 | −179.1 (7) |
C23—N3—C19—C20 | 1.3 (8) | C20—C21—C22—C23 | 1.4 (10) |
C19—N3—C23—C22 | −1.7 (8) | C24—C22—C23—C18i | 1.5 (8) |
Ni1—N3—C23—C18i | −5.0 (6) | C21—C22—C23—N3 | 0.4 (9) |
C19—N3—C23—C18i | 177.6 (5) | C24—C22—C23—N3 | −179.2 (5) |
Ni1—N3—C23—C22 | 175.6 (4) | C23—C22—C24—C25 | −0.9 (10) |
C3—N4—C1—N5 | −0.3 (6) | C21—C22—C24—C25 | 179.6 (7) |
C3—N4—C1—S1 | 178.2 (4) | C21—C22—C23—C18i | −179.0 (6) |
C1—N4—C3—C2 | −0.1 (7) | C22—C24—C25—C17i | −0.8 (11) |
C4—N5—C1—S1 | 5.2 (8) | N5—C2—C3—N4 | 0.5 (7) |
C1—N5—C4—C5 | −62.7 (8) |
Symmetry code: (i) −x, y, −z+1/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
N4—H4···Cl2 | 0.85 (6) | 2.37 (7) | 3.178 (6) | 160 (6) |
C2—H2···Cl3ii | 0.82 (7) | 2.77 (7) | 3.552 (8) | 160 (4) |
C5—H5C···S1 | 0.96 | 2.75 | 3.402 (9) | 126 |
C7—H7A···S1 | 0.96 | 2.68 | 3.409 (8) | 133 |
C10—H10···Cl3iii | 0.93 | 2.72 | 3.557 (7) | 151 |
C25—H25···N6iv | 0.93 | 2.60 | 3.502 (9) | 162 |
Symmetry codes: (ii) −x+1, −y+2, −z+1; (iii) −x+1/2, −y+3/2, −z+1; (iv) x−1/2, −y+1/2, z−1/2. |
Experimental details
Crystal data | |
Chemical formula | [Ni(C12H8N2)3][NiCl3(C7H12N2S)]2·2C2H3N |
Mr | 1324.04 |
Crystal system, space group | Monoclinic, C2/c |
Temperature (K) | 298 |
a, b, c (Å) | 22.8953 (15), 15.2934 (10), 19.9417 (19) |
β (°) | 123.543 (3) |
V (Å3) | 5819.7 (8) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 1.36 |
Crystal size (mm) | 0.24 × 0.20 × 0.18 |
Data collection | |
Diffractometer | Bruker Kappa APEXII CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.737, 0.792 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 30921, 5178, 3346 |
Rint | 0.076 |
(sin θ/λ)max (Å−1) | 0.596 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.050, 0.157, 1.07 |
No. of reflections | 5178 |
No. of parameters | 370 |
No. of restraints | 3 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 1.24, −0.55 |
Computer programs: APEX2 (Bruker, 2007), SAINT (Bruker, 2007), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008) and DIAMOND (Brandenburg, 1999).
D—H···A | D—H | H···A | D···A | D—H···A |
N4—H4···Cl2 | 0.85 (6) | 2.37 (7) | 3.178 (6) | 160 (6) |
C2—H2···Cl3i | 0.82 (7) | 2.77 (7) | 3.552 (8) | 160 (4) |
C5—H5C···S1 | 0.96 | 2.75 | 3.402 (9) | 126 |
C7—H7A···S1 | 0.96 | 2.68 | 3.409 (8) | 133 |
C10—H10···Cl3ii | 0.93 | 2.72 | 3.557 (7) | 151 |
C25—H25···N6iii | 0.93 | 2.60 | 3.502 (9) | 162 |
Symmetry codes: (i) −x+1, −y+2, −z+1; (ii) −x+1/2, −y+3/2, −z+1; (iii) x−1/2, −y+1/2, z−1/2. |
Acknowledgements
The authors thank the CSIR, New Delhi, for financial support.
References
Brandenburg, K. (1999). DIAMOND. Version 1.2c. University of Bonn, Germany. Google Scholar
Bruker (2007). APEX2 and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Chen, X., Chen, H.-F., Xue, G., Chen, H.-Y., Yu, W.-T. & Fang, Q. (2007). Acta Cryst. C63, m166–m168. Web of Science CSD CrossRef IUCr Journals Google Scholar
Fang, H. & Dai, X. (2006). Acta Cryst. E62, m3565–m3566. Web of Science CSD CrossRef IUCr Journals Google Scholar
Fatimi, J., Lagorce, J. F., Chabernaud, M. L., Buxeraud, J. & Raby, C. (1994). Boll. Chim. Farm. 133, 151–155. CAS PubMed Google Scholar
Iradyan, M. A., Ayvazyan, A. K., Mirzoyan, V. S., Paronikyan, G. M., Sarkisyan, T. P., Stepanyan, G. M., Arsenyan, F. G. & Garibdzhanyan, B. T. (1987). Pharm. Chem. J. 21, 403–408. CrossRef Google Scholar
Kister, J., Assef, G., Miller, G. & Metzer, J. (1979). Can. J. Chem. 57, 813–821. CrossRef CAS Web of Science Google Scholar
Senda, S., Ohki, Y., Hirayama, T., Toda, D., Chen, J.-L., Matsumoto, T., Kawaguchi, H. & Tatsumi, K. (2006). Inorg. Chem. 45, 9914–9925. Web of Science CSD CrossRef PubMed CAS Google Scholar
Sheldrick, G. M. (1996). SADABS. University of Göttingen, Germany. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Suescun, L., Mombrú, A. W. & Mariezcurrena, R. A. (1999). Acta Cryst. C55, 1991–1993. Web of Science CSD CrossRef CAS IUCr Journals Google Scholar
Yu, J.-H., Jia, H.-B., Pan, L.-Y., Yang, Q.-X., Wang, T.-G., Xu, J.-Q., Cui, X.-B., Liu, Y.-J., Li, Y.-Z., Lu, C.-H. & Ma, T.-H. (2003). J. Solid State Chem. 175, 152–158. Web of Science CSD CrossRef CAS Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
2-Thioimidazole (N,N,S donors) and its alkyl derivatives have antithyroid activity and platelet inhibitory effects. (Fatimi et al., 1994; Iradyan et al., 1987). The literature revealed the presence of various nickel(II) complexes with phenanthroline (Suescun et al., 1999; Yu et al. (2003); Fang & Dai, 2006; Chen et al., 2007) but none with N-tert-butyl-2-thioimidazole, except the one reported recently (Senda et al., 2006). The present work reports the first structure of a nickel(II) complex with N-tert-butyl-2-thioimidazole and 1,10 phenanthroline, containing a tetrahedral anion, [Ni(tm)(Cl)3]-, and an octahedral cation, [Ni(phen)3]2+.
The title complex (I) is centrosymmetric, ionic in nature and comprises of one complex cation [Ni(phen)3]2+ and two complex anions [Ni(tm)(Cl)3]- in the unit cell (Fig. 1). The metal centre in [Ni(phen)3]2+ is in an octahedral environment, the equatorial plane of which is formed by four phen nitrogen atoms, and the axial positions are occupied by another two nitrogen atoms of phen, with Ni1—N bond distances in the range of 2.079 (4)–2.100 (4) Å. The dihedral angles between the meanplanes of the neighboring phen rings are 77.53°, 86.07° and 85.97°. The cis-angles in the octahedron deviate only slightly from 90° and the trans angle in the axial position is almost linear i.e. 170.54 (15)°. The nickel(II) atom in the [Ni(tm)(Cl)3]- anion is coordinated by three chlorine atoms and one sulfur atom of tm in a distorted tetrahedral geometry. The Ni—Cl bond distances are in the range of 2.251 (15) to 2.275 (15) Å. In the anion the two short bond distances (Ni2—Cl3 and Ni2—Cl1 of 2.2507 (15) and 2.253 (2) Å, respectively) and two long bond distances (Ni2—S1 and Ni2—Cl2 of 2.3054 (17) and 2.2753 (16) Å, respectively) make the geometry distorted tetrahedral.
Due to the presence of several intermolecular interactions between the three chloride ions bonded to atom Ni2 and the hydrogen atoms present on the phen rings, the complex cation is linked to six complex anions (Fig. 2 and Table 1), whereas the complex anions are linked to four complex cations through C—H···Cl hydrogen bonds (Fig. 3 and Table 1). In the crystal packing of complex (I) two layers are linked by hydrogen bonds in the bc plane. The [Ni(phen)3]2+ cations and the [Ni(tm)(Cl)3]- anions interact with each other via hydrogen bonds formed by the terminally coordinated chloride ions of the complex anion (Cl1, Cl2 and Cl3) and the hydrogen atoms present on the phen ligands (Fig. 4). The two complex anions also interact with one another through π–π stacking, with a separation of ca. 3.52 Å, and intermolecular C—H···Cl and C—H···N interactions involving the hydrogen atom of the middle ring of phenanthroline and the nitrogen atom of the acetonitrile molecule present in the lattice (Table 1).