organic compounds
5-Hydroxy-8-nitro-1,4-naphthoquinone
aSchool of Chemical Sciences, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, bSchool of Chemical Engineering, Universiti Sains Malaysia, Seri Ampangan, 14300 Nibong Tebal, Penang, Malaysia, and cX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia
*Correspondence e-mail: hkfun@usm.my
The title compound, C10H5NO5, features an intramolecular O—H⋯O hydrogen bond, forming a six-membered ring with an S(6) ring motif. The nitro group makes a dihedral angle of 71.66 (5)° with the plane of the benzene ring to which it is bound. The two rings are almost coplanar, with a dihedral angle of 4.44 (5)°. Short intermolecular distances between the centroids of the six-membered rings [3.7188 (6)–3.8299 (6) Å] indicate the existence of π–π interactions. The interesting features of the are the short intermolecular O⋯O and O⋯N interactions. The crystal packing is stabilized by intramolecular O—H⋯O and intermolecular C—H⋯O (×3) hydrogen bonds, and C—H⋯π interactions.
Related literature
For related literature on hydrogen-bond motifs, see Bernstein et al. (1995). For values of bond lengths, see Allen et al. (1987). For related literature, see, for example: Guingant & Barreto (1987); Larsen et al. (1996); Krohn et al. (2004); Krohn et al. (2004); Cui et al. (2006); Anuradha et al. (2006).
Experimental
Crystal data
|
Refinement
|
|
Data collection: APEX2 (Bruker, 2005); cell APEX2; data reduction: SAINT (Bruker, 2005); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2003).
Supporting information
10.1107/S1600536808021594/at2591sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536808021594/at2591Isup2.hkl
8-Nitro-5-hydroxy-1,4-naphthoquinone was prepared from 5-hydroxy-1,4-naphthoquinone by the protocol outlined by (Anuradha et al., 2006). Single crystals of 8-nitro-5-hydroxy-1,4-naphthoquinone was obtained by slow evaporation of a chloroform solution at 286 K° C.
Data collection: APEX2 (Bruker, 2005); cell
APEX2 (Bruker, 2005); data reduction: SAINT (Bruker, 2005); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2003).Fig. 1. The molecular structure of the title compound, showing 50% probability displacement ellipsoids and the atomic numbering. Intramolecular hydrogen bond is drawn as a dashed line. | |
Fig. 2. The crystal packing of (I) shows a one-dimensional infinite chain along the [010] direction when viewed down the a-axis. Intramolecular and intermolecular interactions are drawn as dashed lines. |
C10H5NO5 | F(000) = 448 |
Mr = 219.15 | Dx = 1.637 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 5257 reflections |
a = 8.6809 (2) Å | θ = 2.8–31.8° |
b = 8.4250 (2) Å | µ = 0.14 mm−1 |
c = 12.1845 (3) Å | T = 100 K |
β = 93.946 (1)° | Block, brown |
V = 889.02 (4) Å3 | 0.35 × 0.14 × 0.13 mm |
Z = 4 |
Bruker SMART APEXII CCD area-detector diffractometer | 3028 independent reflections |
Radiation source: fine-focus sealed tube | 2493 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.041 |
ϕ and ω scans | θmax = 31.8°, θmin = 2.8° |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | h = −12→12 |
Tmin = 0.901, Tmax = 0.982 | k = −12→12 |
22792 measured reflections | l = −18→17 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.041 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.119 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.11 | w = 1/[σ2(Fo2) + (0.0671P)2 + 0.1177P] where P = (Fo2 + 2Fc2)/3 |
3028 reflections | (Δ/σ)max = 0.001 |
165 parameters | Δρmax = 0.50 e Å−3 |
0 restraints | Δρmin = −0.23 e Å−3 |
C10H5NO5 | V = 889.02 (4) Å3 |
Mr = 219.15 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 8.6809 (2) Å | µ = 0.14 mm−1 |
b = 8.4250 (2) Å | T = 100 K |
c = 12.1845 (3) Å | 0.35 × 0.14 × 0.13 mm |
β = 93.946 (1)° |
Bruker SMART APEXII CCD area-detector diffractometer | 3028 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | 2493 reflections with I > 2σ(I) |
Tmin = 0.901, Tmax = 0.982 | Rint = 0.041 |
22792 measured reflections |
R[F2 > 2σ(F2)] = 0.041 | 0 restraints |
wR(F2) = 0.119 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.11 | Δρmax = 0.50 e Å−3 |
3028 reflections | Δρmin = −0.23 e Å−3 |
165 parameters |
Experimental. The low-temperature data was collected with the Oxford Cyrosystem Cobra low-temperature attachment. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.60929 (9) | 0.14448 (9) | 0.47684 (6) | 0.01684 (17) | |
O2 | 0.70729 (9) | 0.29533 (9) | 0.65117 (6) | 0.01718 (17) | |
O3 | 1.13635 (9) | −0.14728 (9) | 0.74975 (6) | 0.01826 (17) | |
O4 | 0.97394 (10) | −0.42986 (9) | 0.67891 (6) | 0.02146 (19) | |
O5 | 1.11804 (9) | −0.37894 (9) | 0.54429 (6) | 0.01912 (18) | |
N1 | 1.01058 (10) | −0.34927 (10) | 0.60140 (7) | 0.01427 (18) | |
C1 | 0.71200 (11) | 0.03181 (12) | 0.50785 (8) | 0.01280 (18) | |
C2 | 0.71889 (11) | −0.10405 (12) | 0.44177 (8) | 0.01457 (19) | |
C3 | 0.81830 (11) | −0.22605 (12) | 0.47321 (8) | 0.01431 (19) | |
C4 | 0.91370 (11) | −0.21081 (11) | 0.56968 (8) | 0.01219 (18) | |
C5 | 0.91680 (11) | −0.07504 (11) | 0.63367 (7) | 0.01156 (18) | |
C6 | 1.03288 (11) | −0.05166 (12) | 0.72840 (8) | 0.01326 (19) | |
C7 | 1.02414 (12) | 0.09636 (13) | 0.79222 (8) | 0.0172 (2) | |
C8 | 0.91880 (12) | 0.20847 (12) | 0.76649 (8) | 0.0168 (2) | |
C9 | 0.80517 (11) | 0.19086 (12) | 0.67159 (8) | 0.01387 (19) | |
C10 | 0.81225 (11) | 0.04769 (11) | 0.60319 (8) | 0.01189 (18) | |
H8 | 0.9139 (16) | 0.3051 (18) | 0.8063 (12) | 0.022 (4)* | |
H2 | 0.6513 (17) | −0.1106 (19) | 0.3752 (12) | 0.025 (4)* | |
H3 | 0.8222 (16) | −0.3231 (18) | 0.4307 (12) | 0.020 (3)* | |
H7 | 1.1034 (18) | 0.1097 (19) | 0.8530 (13) | 0.029 (4)* | |
H1O1 | 0.620 (2) | 0.223 (2) | 0.5255 (16) | 0.049 (5)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0161 (3) | 0.0151 (4) | 0.0187 (4) | 0.0031 (3) | −0.0031 (3) | 0.0017 (3) |
O2 | 0.0197 (4) | 0.0144 (4) | 0.0176 (3) | 0.0040 (3) | 0.0029 (3) | 0.0005 (3) |
O3 | 0.0190 (4) | 0.0170 (4) | 0.0179 (3) | 0.0025 (3) | −0.0051 (3) | 0.0005 (3) |
O4 | 0.0285 (4) | 0.0150 (4) | 0.0210 (4) | 0.0010 (3) | 0.0023 (3) | 0.0054 (3) |
O5 | 0.0161 (3) | 0.0181 (4) | 0.0234 (4) | 0.0026 (3) | 0.0032 (3) | −0.0025 (3) |
N1 | 0.0159 (4) | 0.0110 (4) | 0.0155 (4) | −0.0001 (3) | −0.0015 (3) | −0.0010 (3) |
C1 | 0.0114 (4) | 0.0132 (4) | 0.0136 (4) | 0.0000 (3) | −0.0003 (3) | 0.0021 (3) |
C2 | 0.0142 (4) | 0.0156 (5) | 0.0135 (4) | −0.0011 (3) | −0.0018 (3) | −0.0004 (3) |
C3 | 0.0152 (4) | 0.0138 (4) | 0.0138 (4) | −0.0011 (3) | 0.0000 (3) | −0.0021 (3) |
C4 | 0.0122 (4) | 0.0110 (4) | 0.0133 (4) | 0.0007 (3) | 0.0005 (3) | 0.0008 (3) |
C5 | 0.0120 (4) | 0.0112 (4) | 0.0114 (4) | −0.0010 (3) | 0.0002 (3) | −0.0001 (3) |
C6 | 0.0143 (4) | 0.0130 (4) | 0.0122 (4) | −0.0011 (3) | −0.0012 (3) | 0.0005 (3) |
C7 | 0.0203 (5) | 0.0157 (5) | 0.0150 (4) | −0.0008 (4) | −0.0030 (3) | −0.0026 (4) |
C8 | 0.0204 (5) | 0.0144 (5) | 0.0153 (4) | −0.0006 (4) | −0.0005 (3) | −0.0035 (3) |
C9 | 0.0155 (4) | 0.0123 (4) | 0.0141 (4) | −0.0002 (3) | 0.0031 (3) | 0.0002 (3) |
C10 | 0.0123 (4) | 0.0110 (4) | 0.0124 (4) | 0.0001 (3) | 0.0011 (3) | 0.0004 (3) |
O1—C1 | 1.3388 (11) | C3—C4 | 1.3964 (13) |
O1—H1O1 | 0.89 (2) | C3—H3 | 0.970 (15) |
O2—C9 | 1.2367 (12) | C4—C5 | 1.3836 (13) |
O3—C6 | 1.2211 (12) | C5—C10 | 1.4087 (13) |
O4—N1 | 1.2229 (11) | C5—C6 | 1.4921 (13) |
O5—N1 | 1.2274 (11) | C6—C7 | 1.4744 (14) |
N1—C4 | 1.4741 (12) | C7—C8 | 1.3369 (15) |
C1—C2 | 1.4031 (14) | C7—H7 | 0.982 (16) |
C1—C10 | 1.4091 (13) | C8—C9 | 1.4748 (14) |
C2—C3 | 1.3793 (14) | C8—H8 | 0.950 (15) |
C2—H2 | 0.969 (15) | C9—C10 | 1.4699 (13) |
Cg1···Cg2i | 3.7188 (6) | O5···O5ii | 3.0367 (11) |
Cg1···Cg2i | 3.8299 (6) | O5···N1ii | 3.0608 (11) |
O2···O5i | 2.9940 (11) | ||
C1—O1—H1O1 | 107.7 (12) | C4—C5—C6 | 122.07 (8) |
O4—N1—O5 | 124.96 (9) | C10—C5—C6 | 119.72 (8) |
O4—N1—C4 | 117.90 (8) | O3—C6—C7 | 120.63 (9) |
O5—N1—C4 | 117.04 (8) | O3—C6—C5 | 121.69 (9) |
O1—C1—C2 | 118.06 (8) | C7—C6—C5 | 117.58 (8) |
O1—C1—C10 | 121.79 (9) | C8—C7—C6 | 122.22 (9) |
C2—C1—C10 | 120.15 (9) | C8—C7—H7 | 121.9 (10) |
C3—C2—C1 | 119.94 (9) | C6—C7—H7 | 115.8 (9) |
C3—C2—H2 | 121.4 (9) | C7—C8—C9 | 121.51 (9) |
C1—C2—H2 | 118.6 (9) | C7—C8—H8 | 122.7 (9) |
C2—C3—C4 | 119.26 (9) | C9—C8—H8 | 115.8 (9) |
C2—C3—H3 | 121.6 (9) | O2—C9—C10 | 121.66 (9) |
C4—C3—H3 | 119.1 (9) | O2—C9—C8 | 119.96 (9) |
C5—C4—C3 | 122.53 (9) | C10—C9—C8 | 118.38 (9) |
C5—C4—N1 | 121.19 (8) | C5—C10—C1 | 119.86 (9) |
C3—C4—N1 | 116.27 (8) | C5—C10—C9 | 120.27 (8) |
C4—C5—C10 | 118.10 (8) | C1—C10—C9 | 119.86 (9) |
O1—C1—C2—C3 | −177.19 (9) | O3—C6—C7—C8 | 175.40 (10) |
C10—C1—C2—C3 | 3.41 (15) | C5—C6—C7—C8 | −1.17 (15) |
C1—C2—C3—C4 | −1.45 (15) | C6—C7—C8—C9 | −0.45 (16) |
C2—C3—C4—C5 | −2.37 (15) | C7—C8—C9—O2 | 178.62 (10) |
C2—C3—C4—N1 | 176.71 (9) | C7—C8—C9—C10 | −1.51 (15) |
O4—N1—C4—C5 | 72.88 (12) | C4—C5—C10—C1 | −2.00 (14) |
O5—N1—C4—C5 | −110.47 (10) | C6—C5—C10—C1 | 174.21 (8) |
O4—N1—C4—C3 | −106.21 (10) | C4—C5—C10—C9 | 176.79 (8) |
O5—N1—C4—C3 | 70.44 (11) | C6—C5—C10—C9 | −7.00 (14) |
C3—C4—C5—C10 | 4.07 (14) | O1—C1—C10—C5 | 178.97 (9) |
N1—C4—C5—C10 | −174.97 (8) | C2—C1—C10—C5 | −1.65 (14) |
C3—C4—C5—C6 | −172.05 (9) | O1—C1—C10—C9 | 0.17 (14) |
N1—C4—C5—C6 | 8.92 (14) | C2—C1—C10—C9 | 179.56 (9) |
C4—C5—C6—O3 | 4.45 (15) | O2—C9—C10—C5 | −174.82 (9) |
C10—C5—C6—O3 | −171.60 (9) | C8—C9—C10—C5 | 5.31 (14) |
C4—C5—C6—C7 | −179.01 (9) | O2—C9—C10—C1 | 3.97 (15) |
C10—C5—C6—C7 | 4.94 (13) | C8—C9—C10—C1 | −175.90 (9) |
Symmetry codes: (i) −x+2, −y, −z+1; (ii) −x+2, −y−1, −z+1. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1O1···O2 | 0.889 (18) | 1.769 (19) | 2.5695 (10) | 148.5 (16) |
C2—H2···O3iii | 0.969 (15) | 2.547 (16) | 3.1853 (12) | 123.4 (12) |
C3—H3···O5ii | 0.970 (15) | 2.577 (15) | 3.3827 (13) | 140.6 (11) |
C7—H7···O1iv | 0.982 (16) | 2.561 (16) | 3.1851 (13) | 121.4 (12) |
C8—H8···Cg1v | 0.950 (15) | 2.976 (14) | 3.6548 (11) | 129.5 (11) |
Symmetry codes: (ii) −x+2, −y−1, −z+1; (iii) x−1/2, −y−1/2, z−1/2; (iv) x+1/2, −y+1/2, z+1/2; (v) −x+3/2, y+1/2, −z+3/2. |
Experimental details
Crystal data | |
Chemical formula | C10H5NO5 |
Mr | 219.15 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 100 |
a, b, c (Å) | 8.6809 (2), 8.4250 (2), 12.1845 (3) |
β (°) | 93.946 (1) |
V (Å3) | 889.02 (4) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.14 |
Crystal size (mm) | 0.35 × 0.14 × 0.13 |
Data collection | |
Diffractometer | Bruker SMART APEXII CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2005) |
Tmin, Tmax | 0.901, 0.982 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 22792, 3028, 2493 |
Rint | 0.041 |
(sin θ/λ)max (Å−1) | 0.742 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.041, 0.119, 1.11 |
No. of reflections | 3028 |
No. of parameters | 165 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.50, −0.23 |
Computer programs: APEX2 (Bruker, 2005), SAINT (Bruker, 2005), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2003).
Cg1···Cg2i | 3.7188 (6) | O5···O5ii | 3.0367 (11) |
Cg1···Cg2i | 3.8299 (6) | O5···N1ii | 3.0608 (11) |
O2···O5i | 2.9940 (11) |
Symmetry codes: (i) −x+2, −y, −z+1; (ii) −x+2, −y−1, −z+1. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1O1···O2 | 0.889 (18) | 1.769 (19) | 2.5695 (10) | 148.5 (16) |
C2—H2···O3iii | 0.969 (15) | 2.547 (16) | 3.1853 (12) | 123.4 (12) |
C3—H3···O5ii | 0.970 (15) | 2.577 (15) | 3.3827 (13) | 140.6 (11) |
C7—H7···O1iv | 0.982 (16) | 2.561 (16) | 3.1851 (13) | 121.4 (12) |
C8—H8···Cg1v | 0.950 (15) | 2.976 (14) | 3.6548 (11) | 129.5 (11) |
Symmetry codes: (ii) −x+2, −y−1, −z+1; (iii) x−1/2, −y−1/2, z−1/2; (iv) x+1/2, −y+1/2, z+1/2; (v) −x+3/2, y+1/2, −z+3/2. |
Footnotes
‡Additional correspondence author, e-mail: ohasnah@usm.my.
Acknowledgements
HO thanks the Malaysian government for the FRGS fund (grant No. 203/PKIMIA/671026). DTCT thanks Universiti Sains Malaysia for financial support. HKF and RK thank the Malaysian government and Universiti Sains Malaysia for the Science Fund grant No. 305/PFIZIK/613312. RK thanks Universiti Sains Malaysia for a post-doctoral research fellowship.
References
Allen, F. H., Kennard, O., Watson, D. G., Brammer, L., Orpen, A. G. & Taylor, R. (1987). J. Chem. Soc. Perkin Trans. 2, pp. S1–S19. CrossRef Web of Science Google Scholar
Anuradha, V., Srinivas, P. V., Aparna, P. & Rao, J. M. (2006). Tetrahedron Lett. 47, 4933–4935. Web of Science CrossRef CAS Google Scholar
Bernstein, J., Davis, R. E., Shimoni, L. & Chang, N.-L. (1995). Angew. Chem. Int. Ed. Engl. 34, 1555–1573. CrossRef CAS Web of Science Google Scholar
Bruker (2005). APEX2, SAINT and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Cui, J. R., Jian, Y. J., Wu, Y. K. & Wang, S. M. (2006). Chin. J. Chem. 24, 1163–1169. Web of Science CSD CrossRef CAS Google Scholar
Guingant, A. & Barreto, M. M. (1987). Tetrahedron Lett. 28, 3107–3110. CrossRef CAS Web of Science Google Scholar
Krohn, K., Sohrab, M. H. & Flörke, U. (2004). Tetrahedron Asymmetry 15, 713–718. Web of Science CSD CrossRef CAS Google Scholar
Larsen, D. S., O'Shea, M. D. & Brooker, S. (1996). Chem. Commun. pp. 203–204. CSD CrossRef Web of Science Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Spek, A. L. (2003). J. Appl. Cryst. 36, 7–13. Web of Science CrossRef CAS IUCr Journals Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
5-Hydroxy-1,4-naphthoquinone (juglone) and its 5-acetoxy-2-bromo analogue is the essential dienophile in the highly convergent and regiospecific Diels-Alder synthesis of ochromycinone (Guingant & Barreto, 1987; Larsen et al., 1996; Krohn et al., 2004) a type of natural anthraquinone which exhibits remarkable antibiotic and antitumour activities (Krohn et al., 2004; Cui et al., 2006). Our aim is to prepare aromatic ring substituted juglone analogues for the purpose of synthesizing new ochromycinone analogues. The title compound was prepared by the direct nitration of juglone with nickel(II) nitrate. The method outlined previously (Anuradha et al., 2006) predicted a ortho-nitro product. However the product that we obtained is a para-nitro product.
Compound (I), ( Fig. 1), features an intramolecular O—H···O hydrogen bond to form a six-membered ring, producing a S(6) ring motif (Bernstein et al., 1995). The bond lenghts and angles are within the normal ranges (Allen et al., 1987). The two phenyl rings are almost coplanar with the dihedral angle of 4.44 (5)°. The nitro group is not coplanar with the benzene ring and its orientation is indicated by the dihedral angle of 71.66 (5)° with the plane of the benzene ring to which it is bound. The short intermolecular distances between the centroids of six-membered rings [3.7188 (6) - 3.8299 (6) Å] prove existence of π–π interactions (Table 1). The interesting feature of the crystal structure is the short intermolecular O···O and O···N interactions (Table 1). The crystal packing,(Fig. 2), of the compound shows one-dimensional infinite chains along the b axis.The crystal packing is stabilized by the intramolecular O—H···O, intermolecular C—H···O hydrogen bonds, π–π, and C—H···π interactions.