metal-organic compounds\(\def\hfill{\hskip 5em}\def\hfil{\hskip 3em}\def\eqno#1{\hfil {#1}}\)

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ISSN: 2056-9890

catena-Poly[cadmium(II)-(μ-3-ammonio-3-phenyl­propanoato-κ2O:O′)-di-μ-chlorido]

aOrdered Matter Science Research Center, College of Chemistry and Chemical Engineering, Southeast University, Nanjing 210096, People's Republic of China
*Correspondence e-mail: quzr@seu.edu.cn

(Received 22 July 2008; accepted 23 July 2008; online 31 July 2008)

The title compound, [CdCl2(C9H11NO2)]n, is a coordination polymer prepared by the hydro­thermal reaction of cadmium(II) chloride and 3-amino-3-phenyl­propanoic acid. Geometric parameters are in the usual ranges. The cadmium cation is octa­hedrally coordinated by four Cl atoms at equatorial sites and two O atoms from two ligands at the axial sites. The material is composed of one-dimensional extended polymeric chains in which two Cl atoms bridge Cd atoms. The crystal structure is stabilized by an intra­molecular N—H⋯O hydrogen bond.

Related literature

For related literature, see: Arki et al. (2004[Arki, A., Tourwe, D., Solymar, M., Fueloep, F., Armstrong, D. W. & Peter, A. (2004). Chromatographia, 60, S43-S54.]); Cohen et al. (2002[Cohen, J. H., Abdel-Magid, A. F., Almond, H. R. Jr & Maryanoff, C. A. (2002). Tetrahedron Lett. 43, 1977-1981.]); Zeller et al. (1965[Zeller, E. A., Ramachander, G., Fleisher, G. A., Ishimaru, T. & Zeller, V. (1965). Biochem. J. 95, 262-269.]); Zhao (2007[Zhao, H. (2007). Acta Cryst. E63, o3400.]); Qu et al. (2004[Qu, Z.-R., Zhao, H., Wang, Y.-P., Wang, X.-S., Ye, Q., Li, Y.-H., Xiong, R.-G., Abrahams, B. F., Liu, Z.-G. & Xue, Z.-L. (2004). Chem. Eur. J. 10, 54-60.]).

[Scheme 1]

Experimental

Crystal data
  • [CdCl2(C9H11NO2)]

  • Mr = 348.49

  • Monoclinic, P 21 /c

  • a = 11.879 (2) Å

  • b = 6.9364 (14) Å

  • c = 14.072 (3) Å

  • β = 110.26 (3)°

  • V = 1087.7 (4) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 2.48 mm−1

  • T = 293 (2) K

  • 0.25 × 0.18 × 0.15 mm

Data collection
  • Rigaku SCXmini diffractometer

  • Absorption correction: multi-scan (CrystalClear; Rigaku, 2005[Rigaku (2005). CrystalClear. Rigaku Corporation, Tokyo, Japan.]) Tmin = 0.592, Tmax = 0.690

  • 9829 measured reflections

  • 2148 independent reflections

  • 1963 reflections with I > 2σ(I)

  • Rint = 0.029

Refinement
  • R[F2 > 2σ(F2)] = 0.018

  • wR(F2) = 0.041

  • S = 0.92

  • 2148 reflections

  • 132 parameters

  • H-atom parameters constrained

  • Δρmax = 0.29 e Å−3

  • Δρmin = −0.31 e Å−3

Table 1
Hydrogen-bond geometry (Å, °)

D—H⋯A D—H H⋯A DA D—H⋯A
N1—H1C⋯O1 0.89 2.08 2.735 (3) 130

Data collection: CrystalClear (Rigaku, 2005[Rigaku (2005). CrystalClear. Rigaku Corporation, Tokyo, Japan.]); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008[Sheldrick, G. M. (2008). Acta Cryst. A64, 112-122.]); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008[Sheldrick, G. M. (2008). Acta Cryst. A64, 112-122.]); molecular graphics: SHELXTL (Sheldrick, 2008[Sheldrick, G. M. (2008). Acta Cryst. A64, 112-122.]); software used to prepare material for publication: PRPKAPPA (Ferguson, 1999[Ferguson, G. (1999). PRPKAPPA. University of Guelph, Canada.]).

Supporting information


Comment top

Coordination frameworks have received much attention over the past decade because of their potential applications. β-amino acids are important molecules due to their pharmacological properties. Recently, there is an increased interest in the enantiomeric preparation of β-amino acids as precursors for the synthesis of novel biologically active compounds (Arki et al., 2004; Cohen et al., 2002; Zeller et al., 1965). We report here the crystal structure of the title compound, which was obtained by the hydrothermal reaction of cadmium chloride and 3-amino-3-phenylpropanoic acid. In the structure of the title compoud, The geometric parameters are in the usual ranges (Zhao, 2007; Qu et al., 2004). The cadmium cation is octahedrally coordinated by four Cl atoms at equatorial sites and two O atoms from two ligands at at axial sites (Fig. 1). The material is composed of one-dimensional extended polymeric chains in which two Cl atoms bridges Cd atoms (Fig. 2). The crystal structure is stabilized by an intramolecular hydrogen bond, (Table 1).

Related literature top

For related literature, see: Arki et al. (2004); Cohen et al. (2002); Zeller et al. (1965); Zhao (2007); Qu et al. (2004).

Experimental top

A mixture of CdCl2 (0.2 mmol, 0.037 g) and 3-amino-3-phenylpropanoic acid (0.2 mmol, 0.033 g) in H2O (4 ml) was heated in Pyrex tube at 100°C for two days. After slowly cooling down to room temperature over a period of 12 h, colorless crystals of the title compound suitable for diffraction were isolated.

Refinement top

Positional parameters of all the H atoms were calculated geometrically and were allowed to ride on the C, N atoms to which they are bonded. C—H = 0.97–0.98 Å, with 1.5Ueq(methyl), C—H = 0.93 Å with Uiso(H) = 1.2Ueq(Caromatic) and N—H = 0.89 Å with Uiso(H) = 1.5Ueq(N).

Computing details top

Data collection: CrystalClear (Rigaku, 2005); cell refinement: CrystalClear (Rigaku, 2005); data reduction: CrystalClear (Rigaku, 2005); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: PRPKAPPA (Ferguson, 1999).

Figures top
[Figure 1] Fig. 1. A partial packing diagram of the title compound, with the displacement ellipsoids were drawn at the 30% probability level. [Symmetry codes: (A) -x+1, y - 1/2, -z + 3/2; (B) -x + 1, y + 1/2, z + 3/2.]
[Figure 2] Fig. 2. Packing diagram of the title compound, showing the structure along the b axis. H atoms have been omitted for clarity.
catena-Poly[cadmium(II)-(µ-3-ammonio-3-phenylpropanoato- κ2O:O')-di-µ-chlorido] top
Crystal data top
[CdCl2(C9H11NO2)]F(000) = 680
Mr = 348.49Dx = 2.128 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -p 2ybcCell parameters from 1979 reflections
a = 11.879 (2) Åθ = 3.1–27.5°
b = 6.9364 (14) ŵ = 2.48 mm1
c = 14.072 (3) ÅT = 293 K
β = 110.26 (3)°Prism, colourless
V = 1087.7 (4) Å30.25 × 0.18 × 0.15 mm
Z = 4
Data collection top
Rigaku SCXmini
diffractometer
2148 independent reflections
Radiation source: fine-focus sealed tube1963 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.029
Detector resolution: 13.6612 pixels mm-1θmax = 26.0°, θmin = 3.1°
CCD Profile fitting scansh = 1414
Absorption correction: multi-scan
(CrystalClear; Rigaku, 2005)
k = 88
Tmin = 0.592, Tmax = 0.690l = 1717
9829 measured reflections
Refinement top
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.018H-atom parameters constrained
wR(F2) = 0.041 w = 1/[σ2(Fo2) + (0.0175P)2 + 1.2054P]
where P = (Fo2 + 2Fc2)/3
S = 0.92(Δ/σ)max = 0.001
2148 reflectionsΔρmax = 0.29 e Å3
132 parametersΔρmin = 0.31 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0014 (2)
Crystal data top
[CdCl2(C9H11NO2)]V = 1087.7 (4) Å3
Mr = 348.49Z = 4
Monoclinic, P21/cMo Kα radiation
a = 11.879 (2) ŵ = 2.48 mm1
b = 6.9364 (14) ÅT = 293 K
c = 14.072 (3) Å0.25 × 0.18 × 0.15 mm
β = 110.26 (3)°
Data collection top
Rigaku SCXmini
diffractometer
2148 independent reflections
Absorption correction: multi-scan
(CrystalClear; Rigaku, 2005)
1963 reflections with I > 2σ(I)
Tmin = 0.592, Tmax = 0.690Rint = 0.029
9829 measured reflections
Refinement top
R[F2 > 2σ(F2)] = 0.0180 restraints
wR(F2) = 0.041H-atom parameters constrained
S = 0.92Δρmax = 0.29 e Å3
2148 reflectionsΔρmin = 0.31 e Å3
132 parameters
Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
Cd10.523335 (14)0.11166 (2)0.744199 (12)0.02328 (7)
Cl10.40439 (5)0.13994 (8)0.60907 (4)0.02792 (13)
Cl20.67267 (5)0.16544 (8)0.83106 (4)0.02717 (13)
O10.57035 (16)0.4852 (3)0.64381 (14)0.0390 (4)
O20.64928 (15)0.1924 (2)0.65962 (13)0.0336 (4)
N10.66195 (17)0.7705 (3)0.55775 (16)0.0339 (5)
H1A0.65660.74900.49400.051*
H1B0.66960.89640.57050.051*
H1C0.59590.72750.56700.051*
C10.6496 (2)0.3701 (3)0.64067 (17)0.0248 (5)
C20.7528 (2)0.4489 (3)0.61134 (18)0.0261 (5)
H2A0.73760.42110.54040.031*
H2B0.82630.38340.65080.031*
C30.76996 (19)0.6662 (3)0.62857 (17)0.0238 (5)
H30.77150.69130.69750.029*
C40.8836 (2)0.7527 (3)0.62093 (17)0.0243 (5)
C50.9706 (2)0.6450 (3)0.6001 (2)0.0315 (5)
H50.95760.51470.58470.038*
C61.0771 (2)0.7308 (4)0.6019 (2)0.0373 (6)
H61.13620.65630.59030.045*
C71.0959 (2)0.9252 (4)0.62066 (19)0.0359 (6)
H71.16610.98310.61980.043*
C81.0096 (2)1.0326 (4)0.6407 (2)0.0355 (6)
H81.02171.16400.65330.043*
C90.9049 (2)0.9479 (4)0.64233 (19)0.0318 (5)
H90.84831.02190.65780.038*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
Cd10.02816 (10)0.01635 (9)0.02832 (10)0.00091 (7)0.01356 (7)0.00123 (6)
Cl10.0328 (3)0.0208 (3)0.0266 (3)0.0000 (2)0.0057 (2)0.0004 (2)
Cl20.0264 (3)0.0230 (3)0.0326 (3)0.0018 (2)0.0108 (2)0.0014 (2)
O10.0391 (10)0.0336 (10)0.0582 (12)0.0027 (8)0.0345 (9)0.0042 (9)
O20.0390 (10)0.0263 (9)0.0436 (10)0.0021 (8)0.0244 (8)0.0053 (8)
N10.0275 (10)0.0356 (12)0.0424 (12)0.0052 (9)0.0169 (9)0.0133 (10)
C10.0291 (12)0.0263 (12)0.0220 (11)0.0050 (10)0.0127 (9)0.0003 (9)
C20.0280 (12)0.0224 (11)0.0337 (13)0.0031 (9)0.0182 (10)0.0014 (10)
C30.0250 (11)0.0238 (11)0.0255 (11)0.0017 (9)0.0127 (9)0.0026 (9)
C40.0251 (11)0.0251 (12)0.0246 (11)0.0017 (9)0.0110 (9)0.0022 (9)
C50.0333 (13)0.0250 (12)0.0421 (14)0.0014 (10)0.0205 (11)0.0035 (11)
C60.0284 (13)0.0446 (16)0.0444 (15)0.0016 (12)0.0195 (11)0.0013 (13)
C70.0278 (12)0.0443 (16)0.0344 (14)0.0108 (11)0.0095 (11)0.0023 (12)
C80.0366 (14)0.0259 (12)0.0401 (15)0.0078 (11)0.0081 (11)0.0009 (11)
C90.0311 (13)0.0267 (12)0.0378 (14)0.0016 (10)0.0123 (11)0.0028 (11)
Geometric parameters (Å, º) top
Cd1—O22.2807 (17)C2—C31.529 (3)
Cd1—O1i2.3888 (18)C2—H2A0.9700
Cd1—Cl1ii2.5965 (8)C2—H2B0.9700
Cd1—Cl12.6072 (8)C3—C41.515 (3)
Cd1—Cl22.6141 (8)C3—H30.9800
Cd1—Cl2ii2.6880 (8)C4—C51.386 (3)
Cl1—Cd1i2.5965 (8)C4—C91.391 (3)
Cl2—Cd1i2.6880 (8)C5—C61.391 (3)
O1—C11.246 (3)C5—H50.9300
O1—Cd1ii2.3888 (18)C6—C71.377 (4)
O2—C11.261 (3)C6—H60.9300
N1—C31.509 (3)C7—C81.373 (4)
N1—H1A0.8900C7—H70.9300
N1—H1B0.8900C8—C91.383 (3)
N1—H1C0.8900C8—H80.9300
C1—C21.524 (3)C9—H90.9300
O2—Cd1—O1i166.93 (6)C1—C2—H2A109.0
O2—Cd1—Cl1ii98.98 (5)C3—C2—H2A109.0
O1i—Cd1—Cl1ii79.65 (5)C1—C2—H2B109.0
O2—Cd1—Cl194.10 (5)C3—C2—H2B109.0
O1i—Cd1—Cl188.67 (5)H2A—C2—H2B107.8
Cl1ii—Cd1—Cl1166.089 (9)N1—C3—C4109.76 (18)
O2—Cd1—Cl287.88 (5)N1—C3—C2109.37 (19)
O1i—Cd1—Cl279.47 (5)C4—C3—C2116.91 (19)
Cl1ii—Cd1—Cl297.59 (3)N1—C3—H3106.8
Cl1—Cd1—Cl287.56 (3)C4—C3—H3106.8
O2—Cd1—Cl2ii106.76 (5)C2—C3—H3106.8
O1i—Cd1—Cl2ii86.18 (5)C5—C4—C9118.5 (2)
Cl1ii—Cd1—Cl2ii86.24 (3)C5—C4—C3123.3 (2)
Cl1—Cd1—Cl2ii85.47 (3)C9—C4—C3118.0 (2)
Cl2—Cd1—Cl2ii164.176 (16)C4—C5—C6120.4 (2)
Cd1i—Cl1—Cd185.28 (3)C4—C5—H5119.8
Cd1—Cl2—Cd1i83.32 (3)C6—C5—H5119.8
C1—O1—Cd1ii142.04 (16)C7—C6—C5120.5 (2)
C1—O2—Cd1113.60 (14)C7—C6—H6119.7
C3—N1—H1A109.5C5—C6—H6119.7
C3—N1—H1B109.5C8—C7—C6119.2 (2)
H1A—N1—H1B109.5C8—C7—H7120.4
C3—N1—H1C109.5C6—C7—H7120.4
H1A—N1—H1C109.5C7—C8—C9120.8 (2)
H1B—N1—H1C109.5C7—C8—H8119.6
O1—C1—O2124.1 (2)C9—C8—H8119.6
O1—C1—C2117.9 (2)C8—C9—C4120.5 (2)
O2—C1—C2118.0 (2)C8—C9—H9119.8
C1—C2—C3112.72 (19)C4—C9—H9119.8
Symmetry codes: (i) x+1, y1/2, z+3/2; (ii) x+1, y+1/2, z+3/2.
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N1—H1C···O10.892.082.735 (3)130

Experimental details

Crystal data
Chemical formula[CdCl2(C9H11NO2)]
Mr348.49
Crystal system, space groupMonoclinic, P21/c
Temperature (K)293
a, b, c (Å)11.879 (2), 6.9364 (14), 14.072 (3)
β (°) 110.26 (3)
V3)1087.7 (4)
Z4
Radiation typeMo Kα
µ (mm1)2.48
Crystal size (mm)0.25 × 0.18 × 0.15
Data collection
DiffractometerRigaku SCXmini
diffractometer
Absorption correctionMulti-scan
(CrystalClear; Rigaku, 2005)
Tmin, Tmax0.592, 0.690
No. of measured, independent and
observed [I > 2σ(I)] reflections
9829, 2148, 1963
Rint0.029
(sin θ/λ)max1)0.617
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.018, 0.041, 0.92
No. of reflections2148
No. of parameters132
H-atom treatmentH-atom parameters constrained
Δρmax, Δρmin (e Å3)0.29, 0.31

Computer programs: CrystalClear (Rigaku, 2005), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008), PRPKAPPA (Ferguson, 1999).

Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N1—H1C···O10.892.082.735 (3)130.0
 

Acknowledgements

This work was supported by a Start-up Grant from Southeast University to ZRQ.

References

First citationArki, A., Tourwe, D., Solymar, M., Fueloep, F., Armstrong, D. W. & Peter, A. (2004). Chromatographia, 60, S43–S54.  Web of Science CrossRef CAS Google Scholar
First citationCohen, J. H., Abdel-Magid, A. F., Almond, H. R. Jr & Maryanoff, C. A. (2002). Tetrahedron Lett. 43, 1977–1981.  Web of Science CrossRef CAS Google Scholar
First citationFerguson, G. (1999). PRPKAPPA. University of Guelph, Canada.  Google Scholar
First citationQu, Z.-R., Zhao, H., Wang, Y.-P., Wang, X.-S., Ye, Q., Li, Y.-H., Xiong, R.-G., Abrahams, B. F., Liu, Z.-G. & Xue, Z.-L. (2004). Chem. Eur. J. 10, 54–60.  Google Scholar
First citationRigaku (2005). CrystalClear. Rigaku Corporation, Tokyo, Japan.  Google Scholar
First citationSheldrick, G. M. (2008). Acta Cryst. A64, 112–122.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationZeller, E. A., Ramachander, G., Fleisher, G. A., Ishimaru, T. & Zeller, V. (1965). Biochem. J. 95, 262–269.  PubMed CAS Web of Science Google Scholar
First citationZhao, H. (2007). Acta Cryst. E63, o3400.  Web of Science CSD CrossRef IUCr Journals Google Scholar

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