metal-organic compounds
catena-Poly[cadmium(II)-(μ-3-ammonio-3-phenylpropanoato-κ2O:O′)-di-μ-chlorido]
aOrdered Matter Science Research Center, College of Chemistry and Chemical Engineering, Southeast University, Nanjing 210096, People's Republic of China
*Correspondence e-mail: quzr@seu.edu.cn
The title compound, [CdCl2(C9H11NO2)]n, is a coordination polymer prepared by the hydrothermal reaction of cadmium(II) chloride and 3-amino-3-phenylpropanoic acid. Geometric parameters are in the usual ranges. The cadmium cation is octahedrally coordinated by four Cl atoms at equatorial sites and two O atoms from two ligands at the axial sites. The material is composed of one-dimensional extended polymeric chains in which two Cl atoms bridge Cd atoms. The is stabilized by an intramolecular N—H⋯O hydrogen bond.
Related literature
For related literature, see: Arki et al. (2004); Cohen et al. (2002); Zeller et al. (1965); Zhao (2007); Qu et al. (2004).
Experimental
Crystal data
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Refinement
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Data collection: CrystalClear (Rigaku, 2005); cell CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: PRPKAPPA (Ferguson, 1999).
Supporting information
10.1107/S1600536808023179/bx2165sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536808023179/bx2165Isup2.hkl
A mixture of CdCl2 (0.2 mmol, 0.037 g) and 3-amino-3-phenylpropanoic acid (0.2 mmol, 0.033 g) in H2O (4 ml) was heated in Pyrex tube at 100°C for two days. After slowly cooling down to room temperature over a period of 12 h, colorless crystals of the title compound suitable for diffraction were isolated.
Positional parameters of all the H atoms were calculated geometrically and were allowed to ride on the C, N atoms to which they are bonded. C—H = 0.97–0.98 Å, with 1.5Ueq(methyl), C—H = 0.93 Å with Uiso(H) = 1.2Ueq(Caromatic) and N—H = 0.89 Å with Uiso(H) = 1.5Ueq(N).
Data collection: CrystalClear (Rigaku, 2005); cell
CrystalClear (Rigaku, 2005); data reduction: CrystalClear (Rigaku, 2005); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: PRPKAPPA (Ferguson, 1999).[CdCl2(C9H11NO2)] | F(000) = 680 |
Mr = 348.49 | Dx = 2.128 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -p 2ybc | Cell parameters from 1979 reflections |
a = 11.879 (2) Å | θ = 3.1–27.5° |
b = 6.9364 (14) Å | µ = 2.48 mm−1 |
c = 14.072 (3) Å | T = 293 K |
β = 110.26 (3)° | Prism, colourless |
V = 1087.7 (4) Å3 | 0.25 × 0.18 × 0.15 mm |
Z = 4 |
Rigaku SCXmini diffractometer | 2148 independent reflections |
Radiation source: fine-focus sealed tube | 1963 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.029 |
Detector resolution: 13.6612 pixels mm-1 | θmax = 26.0°, θmin = 3.1° |
CCD Profile fitting scans | h = −14→14 |
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005) | k = −8→8 |
Tmin = 0.592, Tmax = 0.690 | l = −17→17 |
9829 measured reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.018 | H-atom parameters constrained |
wR(F2) = 0.041 | w = 1/[σ2(Fo2) + (0.0175P)2 + 1.2054P] where P = (Fo2 + 2Fc2)/3 |
S = 0.92 | (Δ/σ)max = 0.001 |
2148 reflections | Δρmax = 0.29 e Å−3 |
132 parameters | Δρmin = −0.31 e Å−3 |
0 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0014 (2) |
[CdCl2(C9H11NO2)] | V = 1087.7 (4) Å3 |
Mr = 348.49 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 11.879 (2) Å | µ = 2.48 mm−1 |
b = 6.9364 (14) Å | T = 293 K |
c = 14.072 (3) Å | 0.25 × 0.18 × 0.15 mm |
β = 110.26 (3)° |
Rigaku SCXmini diffractometer | 2148 independent reflections |
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005) | 1963 reflections with I > 2σ(I) |
Tmin = 0.592, Tmax = 0.690 | Rint = 0.029 |
9829 measured reflections |
R[F2 > 2σ(F2)] = 0.018 | 0 restraints |
wR(F2) = 0.041 | H-atom parameters constrained |
S = 0.92 | Δρmax = 0.29 e Å−3 |
2148 reflections | Δρmin = −0.31 e Å−3 |
132 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cd1 | 0.523335 (14) | 0.11166 (2) | 0.744199 (12) | 0.02328 (7) | |
Cl1 | 0.40439 (5) | −0.13994 (8) | 0.60907 (4) | 0.02792 (13) | |
Cl2 | 0.67267 (5) | −0.16544 (8) | 0.83106 (4) | 0.02717 (13) | |
O1 | 0.57035 (16) | 0.4852 (3) | 0.64381 (14) | 0.0390 (4) | |
O2 | 0.64928 (15) | 0.1924 (2) | 0.65962 (13) | 0.0336 (4) | |
N1 | 0.66195 (17) | 0.7705 (3) | 0.55775 (16) | 0.0339 (5) | |
H1A | 0.6566 | 0.7490 | 0.4940 | 0.051* | |
H1B | 0.6696 | 0.8964 | 0.5705 | 0.051* | |
H1C | 0.5959 | 0.7275 | 0.5670 | 0.051* | |
C1 | 0.6496 (2) | 0.3701 (3) | 0.64067 (17) | 0.0248 (5) | |
C2 | 0.7528 (2) | 0.4489 (3) | 0.61134 (18) | 0.0261 (5) | |
H2A | 0.7376 | 0.4211 | 0.5404 | 0.031* | |
H2B | 0.8263 | 0.3834 | 0.6508 | 0.031* | |
C3 | 0.76996 (19) | 0.6662 (3) | 0.62857 (17) | 0.0238 (5) | |
H3 | 0.7715 | 0.6913 | 0.6975 | 0.029* | |
C4 | 0.8836 (2) | 0.7527 (3) | 0.62093 (17) | 0.0243 (5) | |
C5 | 0.9706 (2) | 0.6450 (3) | 0.6001 (2) | 0.0315 (5) | |
H5 | 0.9576 | 0.5147 | 0.5847 | 0.038* | |
C6 | 1.0771 (2) | 0.7308 (4) | 0.6019 (2) | 0.0373 (6) | |
H6 | 1.1362 | 0.6563 | 0.5903 | 0.045* | |
C7 | 1.0959 (2) | 0.9252 (4) | 0.62066 (19) | 0.0359 (6) | |
H7 | 1.1661 | 0.9831 | 0.6198 | 0.043* | |
C8 | 1.0096 (2) | 1.0326 (4) | 0.6407 (2) | 0.0355 (6) | |
H8 | 1.0217 | 1.1640 | 0.6533 | 0.043* | |
C9 | 0.9049 (2) | 0.9479 (4) | 0.64233 (19) | 0.0318 (5) | |
H9 | 0.8483 | 1.0219 | 0.6578 | 0.038* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cd1 | 0.02816 (10) | 0.01635 (9) | 0.02832 (10) | −0.00091 (7) | 0.01356 (7) | −0.00123 (6) |
Cl1 | 0.0328 (3) | 0.0208 (3) | 0.0266 (3) | 0.0000 (2) | 0.0057 (2) | 0.0004 (2) |
Cl2 | 0.0264 (3) | 0.0230 (3) | 0.0326 (3) | 0.0018 (2) | 0.0108 (2) | 0.0014 (2) |
O1 | 0.0391 (10) | 0.0336 (10) | 0.0582 (12) | 0.0027 (8) | 0.0345 (9) | 0.0042 (9) |
O2 | 0.0390 (10) | 0.0263 (9) | 0.0436 (10) | −0.0021 (8) | 0.0244 (8) | 0.0053 (8) |
N1 | 0.0275 (10) | 0.0356 (12) | 0.0424 (12) | 0.0052 (9) | 0.0169 (9) | 0.0133 (10) |
C1 | 0.0291 (12) | 0.0263 (12) | 0.0220 (11) | −0.0050 (10) | 0.0127 (9) | −0.0003 (9) |
C2 | 0.0280 (12) | 0.0224 (11) | 0.0337 (13) | −0.0031 (9) | 0.0182 (10) | −0.0014 (10) |
C3 | 0.0250 (11) | 0.0238 (11) | 0.0255 (11) | 0.0017 (9) | 0.0127 (9) | 0.0026 (9) |
C4 | 0.0251 (11) | 0.0251 (12) | 0.0246 (11) | −0.0017 (9) | 0.0110 (9) | 0.0022 (9) |
C5 | 0.0333 (13) | 0.0250 (12) | 0.0421 (14) | −0.0014 (10) | 0.0205 (11) | −0.0035 (11) |
C6 | 0.0284 (13) | 0.0446 (16) | 0.0444 (15) | 0.0016 (12) | 0.0195 (11) | −0.0013 (13) |
C7 | 0.0278 (12) | 0.0443 (16) | 0.0344 (14) | −0.0108 (11) | 0.0095 (11) | 0.0023 (12) |
C8 | 0.0366 (14) | 0.0259 (12) | 0.0401 (15) | −0.0078 (11) | 0.0081 (11) | −0.0009 (11) |
C9 | 0.0311 (13) | 0.0267 (12) | 0.0378 (14) | 0.0016 (10) | 0.0123 (11) | −0.0028 (11) |
Cd1—O2 | 2.2807 (17) | C2—C3 | 1.529 (3) |
Cd1—O1i | 2.3888 (18) | C2—H2A | 0.9700 |
Cd1—Cl1ii | 2.5965 (8) | C2—H2B | 0.9700 |
Cd1—Cl1 | 2.6072 (8) | C3—C4 | 1.515 (3) |
Cd1—Cl2 | 2.6141 (8) | C3—H3 | 0.9800 |
Cd1—Cl2ii | 2.6880 (8) | C4—C5 | 1.386 (3) |
Cl1—Cd1i | 2.5965 (8) | C4—C9 | 1.391 (3) |
Cl2—Cd1i | 2.6880 (8) | C5—C6 | 1.391 (3) |
O1—C1 | 1.246 (3) | C5—H5 | 0.9300 |
O1—Cd1ii | 2.3888 (18) | C6—C7 | 1.377 (4) |
O2—C1 | 1.261 (3) | C6—H6 | 0.9300 |
N1—C3 | 1.509 (3) | C7—C8 | 1.373 (4) |
N1—H1A | 0.8900 | C7—H7 | 0.9300 |
N1—H1B | 0.8900 | C8—C9 | 1.383 (3) |
N1—H1C | 0.8900 | C8—H8 | 0.9300 |
C1—C2 | 1.524 (3) | C9—H9 | 0.9300 |
O2—Cd1—O1i | 166.93 (6) | C1—C2—H2A | 109.0 |
O2—Cd1—Cl1ii | 98.98 (5) | C3—C2—H2A | 109.0 |
O1i—Cd1—Cl1ii | 79.65 (5) | C1—C2—H2B | 109.0 |
O2—Cd1—Cl1 | 94.10 (5) | C3—C2—H2B | 109.0 |
O1i—Cd1—Cl1 | 88.67 (5) | H2A—C2—H2B | 107.8 |
Cl1ii—Cd1—Cl1 | 166.089 (9) | N1—C3—C4 | 109.76 (18) |
O2—Cd1—Cl2 | 87.88 (5) | N1—C3—C2 | 109.37 (19) |
O1i—Cd1—Cl2 | 79.47 (5) | C4—C3—C2 | 116.91 (19) |
Cl1ii—Cd1—Cl2 | 97.59 (3) | N1—C3—H3 | 106.8 |
Cl1—Cd1—Cl2 | 87.56 (3) | C4—C3—H3 | 106.8 |
O2—Cd1—Cl2ii | 106.76 (5) | C2—C3—H3 | 106.8 |
O1i—Cd1—Cl2ii | 86.18 (5) | C5—C4—C9 | 118.5 (2) |
Cl1ii—Cd1—Cl2ii | 86.24 (3) | C5—C4—C3 | 123.3 (2) |
Cl1—Cd1—Cl2ii | 85.47 (3) | C9—C4—C3 | 118.0 (2) |
Cl2—Cd1—Cl2ii | 164.176 (16) | C4—C5—C6 | 120.4 (2) |
Cd1i—Cl1—Cd1 | 85.28 (3) | C4—C5—H5 | 119.8 |
Cd1—Cl2—Cd1i | 83.32 (3) | C6—C5—H5 | 119.8 |
C1—O1—Cd1ii | 142.04 (16) | C7—C6—C5 | 120.5 (2) |
C1—O2—Cd1 | 113.60 (14) | C7—C6—H6 | 119.7 |
C3—N1—H1A | 109.5 | C5—C6—H6 | 119.7 |
C3—N1—H1B | 109.5 | C8—C7—C6 | 119.2 (2) |
H1A—N1—H1B | 109.5 | C8—C7—H7 | 120.4 |
C3—N1—H1C | 109.5 | C6—C7—H7 | 120.4 |
H1A—N1—H1C | 109.5 | C7—C8—C9 | 120.8 (2) |
H1B—N1—H1C | 109.5 | C7—C8—H8 | 119.6 |
O1—C1—O2 | 124.1 (2) | C9—C8—H8 | 119.6 |
O1—C1—C2 | 117.9 (2) | C8—C9—C4 | 120.5 (2) |
O2—C1—C2 | 118.0 (2) | C8—C9—H9 | 119.8 |
C1—C2—C3 | 112.72 (19) | C4—C9—H9 | 119.8 |
Symmetry codes: (i) −x+1, y−1/2, −z+3/2; (ii) −x+1, y+1/2, −z+3/2. |
Experimental details
Crystal data | |
Chemical formula | [CdCl2(C9H11NO2)] |
Mr | 348.49 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 293 |
a, b, c (Å) | 11.879 (2), 6.9364 (14), 14.072 (3) |
β (°) | 110.26 (3) |
V (Å3) | 1087.7 (4) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 2.48 |
Crystal size (mm) | 0.25 × 0.18 × 0.15 |
Data collection | |
Diffractometer | Rigaku SCXmini diffractometer |
Absorption correction | Multi-scan (CrystalClear; Rigaku, 2005) |
Tmin, Tmax | 0.592, 0.690 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 9829, 2148, 1963 |
Rint | 0.029 |
(sin θ/λ)max (Å−1) | 0.617 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.018, 0.041, 0.92 |
No. of reflections | 2148 |
No. of parameters | 132 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.29, −0.31 |
Computer programs: CrystalClear (Rigaku, 2005), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008), PRPKAPPA (Ferguson, 1999).
Acknowledgements
This work was supported by a Start-up Grant from Southeast University to ZRQ.
References
Arki, A., Tourwe, D., Solymar, M., Fueloep, F., Armstrong, D. W. & Peter, A. (2004). Chromatographia, 60, S43–S54. Web of Science CrossRef CAS Google Scholar
Cohen, J. H., Abdel-Magid, A. F., Almond, H. R. Jr & Maryanoff, C. A. (2002). Tetrahedron Lett. 43, 1977–1981. Web of Science CrossRef CAS Google Scholar
Ferguson, G. (1999). PRPKAPPA. University of Guelph, Canada. Google Scholar
Qu, Z.-R., Zhao, H., Wang, Y.-P., Wang, X.-S., Ye, Q., Li, Y.-H., Xiong, R.-G., Abrahams, B. F., Liu, Z.-G. & Xue, Z.-L. (2004). Chem. Eur. J. 10, 54–60. Google Scholar
Rigaku (2005). CrystalClear. Rigaku Corporation, Tokyo, Japan. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Zeller, E. A., Ramachander, G., Fleisher, G. A., Ishimaru, T. & Zeller, V. (1965). Biochem. J. 95, 262–269. PubMed CAS Web of Science Google Scholar
Zhao, H. (2007). Acta Cryst. E63, o3400. Web of Science CSD CrossRef IUCr Journals Google Scholar
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Coordination frameworks have received much attention over the past decade because of their potential applications. β-amino acids are important molecules due to their pharmacological properties. Recently, there is an increased interest in the enantiomeric preparation of β-amino acids as precursors for the synthesis of novel biologically active compounds (Arki et al., 2004; Cohen et al., 2002; Zeller et al., 1965). We report here the crystal structure of the title compound, which was obtained by the hydrothermal reaction of cadmium chloride and 3-amino-3-phenylpropanoic acid. In the structure of the title compoud, The geometric parameters are in the usual ranges (Zhao, 2007; Qu et al., 2004). The cadmium cation is octahedrally coordinated by four Cl atoms at equatorial sites and two O atoms from two ligands at at axial sites (Fig. 1). The material is composed of one-dimensional extended polymeric chains in which two Cl atoms bridges Cd atoms (Fig. 2). The crystal structure is stabilized by an intramolecular hydrogen bond, (Table 1).