organic compounds
Ethyl 1-O-tert-butyldimethylsilyl-2,3-O-isopropylidene-5-[(2′S)-tetrahydropyran-2-yloxy]-D-glycero-α-D-manno-heptofuronate
aDepartamento de Química Orgánica, Universidade de Santiago de Compostela, 15782 Santiago de Compostela, Spain, and bDepartamento de Química Inorgánica, Facultade de Química, Universidad de Vigo, 36310 Vigo, Pontevedra, Spain
*Correspondence e-mail: ramon.estevez@usc.es
The title compound {systematic name: (2S,3R)-ethyl 3-[(3aS,4R,6S,6aS)-6-tert-butyldimethylsilyloxy-2,2-dimethylperhydrofuro[3,4-d][1,3]dioxol-4-yl]-2-nitro-3-[(S)-tetrahydro-2H-pyran-2-yloxy]propanoate}, C23H41NO10Si, is the product of the Henry reaction of 1-O-tert-butyldimethylsilyl-2,3-O-isopropylidene-α-D-lyxo-pentadialdo-1,4-furanose with ethyl nitroacetate and the subsequent protection of its C-5 hydroxy group as tetrahydropyranyl, in order to avoid the retro-Henry reaction. The tetrahydropyranyl group adopts a chair conformation. The assumed from the synthesis, was confirmed from the diffraction data.
Related literature
For the preparation of the aldehyde precursor of the title compound, see: Brewster et al. (1987). For the Henry reaction, see: Soengas et al. (2003a). For the protection as tetrahydropyran, see: Soengas et al. (2003b). For other related literature, see: Gruner et al. (2002); Lillelund et al. (2002); Ogawa et al. (2005); Chakraborty et al. (2002).
Experimental
Crystal data
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Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1994); cell CAD-4 EXPRESS; data reduction: XCAD4 (Harms & Wocadlo, 1995); program(s) used to solve structure: SIR97 (Altomare et al., 1999); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).
Supporting information
10.1107/S1600536808021193/cf2203sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536808021193/cf2203Isup2.hkl
Ethyl nitroacetate (0.26 ml, 2.36 mmol) and sodium methoxide (1.12 g, 2.28 mmol) were added to a solution of 1-O-tert-butyldimethylsilyl-2,3-O-isopropylidene-α-D-lyxo-pentadialdo-1,4-furanose (1) (0.62 g, 2.1 mmol) in dry methanol (6 ml), cooled at 273 K under argon. The reaction mixture was stirred at room temperature for 5 h and then neutralized with DOWEX 50W resin, filtered, evaporated in vacuo, and the resulting residue submitted to flash (ethyl acetate/hexane 1:6) to give the epimeric mixture of ethyl 1-O-tert-butyldimethylsilyl-2,3-O-isopropylidene-D-glycero-a-D-manno-heptofuronate (2) (0.63 g, 70% yield) as an unstable gum.
Dry tetrahydropyran (0.39 ml, 4.32 mmol) and pyridinium p-toluenesulfonate (0.12 g, 0.43 mmol) were added to a solution of the above epimeric mixture (0.63 g, 1.45 mmol) in dry dichloromethane (12 ml). The solution was stirred at room temperature for 24 h, then diethyl ether (18 ml) was added and the mixture washed with brine (12 ml), dried with anhydrous sodium sulfate, filtered and evaporated in vacuo to give a residue that was purified by flash δ 0.09, 0.13 (2 × s, 6H, SiMe2); 0.89 (s, 9H, SitBu); 1.30 (t, 3H, J = 7.2 Hz, –CH3); 1.32, 1.46 (2 × s, 6H, –CH3); 1.54–1.72 (m, 6H, OTHP); 3.56–3.69 (m, 1H, OTHP); 3.83–3.89 (m, 1H, OTHP); 4.15–4.36 (m, 2H); 4.55 (d, 1H, J3,4 = 5.5 Hz, H3); 4.66 (dd, 1H, J2,1 = 3.8 Hz, J3,2 = 9.5 Hz, H2); 4.74–4.79 (m, 2H); 4.96 (s, 1H), 5.23 (s, 1H), 5.81 (d, 1H, J1,2 = 3.8 Hz, H1). 13C NMR (75.4 MHz, CDCl3) δ -5.86, -4.60, 13.93, 17.88, 18.88, 25.06, 25.18, 25.15, 25.56, 26.15, 30.58, 62.44, 74.51,77.80, 79.85, 86.69, 89.78, 101.05, 101.44, 112.50, 162.32. MS(EI) (m/z,%) 504 (M+-15, 0.1), 436 (1), 190 (3), 129 (14), 85 (100); Found C 53.15, H 7.94, N 2.74 C23H41NO10Si requires C 53.16, H 7.95, N 2.70. The reaction scheme is shown in Fig. 2. Crystals for X-ray diffraction were obtained from ethanol.
(ethyl acetate/hexane 1:9) to give an oil; after crystallization from hexane this gave the title compound (3) (0.24 g, 32%) as a white crystalline solid. mp 369–370 K; [a]D20 +108.0° (c, 1 in CHCl3); IR (NaCl, cm-1) 1762 (C=O), 1569, 1373 (NO2); 1H NMR (300 MHz, CDCl3)H atoms were positioned geometrically with C—H = 0.96–0.98 Å and refined using a riding model, with Uiso(H) equal to 1.2 (or 1.5 for methyl H atoms) times Ueq(C).
Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1994); cell
CAD-4 EXPRESS (Enraf–Nonius, 1994); data reduction: XCAD4 (Harms & Wocadlo, 1995); program(s) used to solve structure: SIR97 (Altomare et al., 1999); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).Fig. 1. The molecular structure of (3), with atom labels and 50% probability displacement ellipsoids. H atoms have been omitted. | |
Fig. 2. Chemical reaction scheme. |
C23H41NO10Si | Dx = 1.176 Mg m−3 |
Mr = 519.66 | Cu Kα radiation, λ = 1.54184 Å |
Orthorhombic, P212121 | Cell parameters from 18 reflections |
a = 15.593 (3) Å | θ = 17.6–42.2° |
b = 9.563 (4) Å | µ = 1.13 mm−1 |
c = 19.690 (3) Å | T = 293 K |
V = 2935.9 (15) Å3 | Prism, colourless |
Z = 4 | 0.48 × 0.40 × 0.32 mm |
F(000) = 1120 |
Enraf–Nonius TurboCAD-4 diffractometer | 3434 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.037 |
Graphite monochromator | θmax = 73.4°, θmin = 3.6° |
Non–profiled ω/2θ scans | h = −19→0 |
Absorption correction: ψ scan (North et al., 1968) | k = −11→0 |
Tmin = 0.614, Tmax = 0.714 | l = −24→24 |
6473 measured reflections | 3 standard reflections every 167 reflections |
5898 independent reflections | intensity decay: 4% |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.066 | H-atom parameters constrained |
wR(F2) = 0.264 | w = 1/[σ2(Fo2) + (0.1249P)2 + 1.1254P] where P = (Fo2 + 2Fc2)/3 |
S = 1.11 | (Δ/σ)max < 0.001 |
5898 reflections | Δρmax = 0.22 e Å−3 |
325 parameters | Δρmin = −0.27 e Å−3 |
0 restraints | Absolute structure: Flack (1983), 2569 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.04 (8) |
C23H41NO10Si | V = 2935.9 (15) Å3 |
Mr = 519.66 | Z = 4 |
Orthorhombic, P212121 | Cu Kα radiation |
a = 15.593 (3) Å | µ = 1.13 mm−1 |
b = 9.563 (4) Å | T = 293 K |
c = 19.690 (3) Å | 0.48 × 0.40 × 0.32 mm |
Enraf–Nonius TurboCAD-4 diffractometer | 3434 reflections with I > 2σ(I) |
Absorption correction: ψ scan (North et al., 1968) | Rint = 0.037 |
Tmin = 0.614, Tmax = 0.714 | 3 standard reflections every 167 reflections |
6473 measured reflections | intensity decay: 4% |
5898 independent reflections |
R[F2 > 2σ(F2)] = 0.066 | H-atom parameters constrained |
wR(F2) = 0.264 | Δρmax = 0.22 e Å−3 |
S = 1.11 | Δρmin = −0.27 e Å−3 |
5898 reflections | Absolute structure: Flack (1983), 2569 Friedel pairs |
325 parameters | Absolute structure parameter: 0.04 (8) |
0 restraints |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.3708 (2) | 0.3276 (4) | 0.43815 (17) | 0.0688 (9) | |
C2 | 0.4611 (3) | 0.3178 (7) | 0.4327 (3) | 0.0722 (14) | |
H2 | 0.4895 | 0.3750 | 0.4673 | 0.087* | |
C3 | 0.4804 (3) | 0.1651 (6) | 0.4427 (3) | 0.0713 (13) | |
H3 | 0.5281 | 0.1338 | 0.4142 | 0.086* | |
C4 | 0.3965 (3) | 0.0870 (6) | 0.4260 (3) | 0.0696 (13) | |
H4 | 0.4041 | 0.0158 | 0.3908 | 0.084* | |
C5 | 0.3381 (3) | 0.2059 (6) | 0.4035 (2) | 0.0666 (13) | |
H5 | 0.3447 | 0.2194 | 0.3545 | 0.080* | |
O6 | 0.4953 (2) | 0.1368 (5) | 0.51299 (19) | 0.0879 (11) | |
C7 | 0.4381 (4) | 0.0343 (7) | 0.5360 (3) | 0.0780 (15) | |
O8 | 0.3698 (2) | 0.0295 (5) | 0.4890 (2) | 0.0854 (12) | |
C9 | 0.4844 (7) | −0.1044 (9) | 0.5337 (7) | 0.181 (6) | |
H9A | 0.4487 | −0.1755 | 0.5534 | 0.271* | |
H9B | 0.5369 | −0.0976 | 0.5589 | 0.271* | |
H9C | 0.4969 | −0.1282 | 0.4874 | 0.271* | |
C10 | 0.4081 (6) | 0.0680 (17) | 0.6031 (4) | 0.194 (7) | |
H10A | 0.3768 | 0.1545 | 0.6017 | 0.290* | |
H10B | 0.4562 | 0.0774 | 0.6331 | 0.290* | |
H10C | 0.3712 | −0.0052 | 0.6191 | 0.290* | |
O11 | 0.4874 (2) | 0.3565 (4) | 0.36718 (17) | 0.0756 (9) | |
Si12 | 0.50307 (12) | 0.51726 (18) | 0.33863 (9) | 0.0858 (5) | |
C13 | 0.4458 (7) | 0.6418 (10) | 0.3943 (6) | 0.166 (5) | |
H13A | 0.3886 | 0.6087 | 0.4023 | 0.249* | |
H13B | 0.4435 | 0.7318 | 0.3727 | 0.249* | |
H13C | 0.4757 | 0.6497 | 0.4368 | 0.249* | |
C14 | 0.4610 (7) | 0.5262 (12) | 0.2497 (5) | 0.148 (4) | |
H14A | 0.4664 | 0.4362 | 0.2286 | 0.222* | |
H14B | 0.4933 | 0.5939 | 0.2244 | 0.222* | |
H14C | 0.4017 | 0.5532 | 0.2506 | 0.222* | |
C15 | 0.6207 (5) | 0.5470 (9) | 0.3385 (4) | 0.107 (2) | |
C16 | 0.6623 (6) | 0.4457 (13) | 0.2889 (5) | 0.156 (4) | |
H16A | 0.7196 | 0.4765 | 0.2789 | 0.233* | |
H16B | 0.6294 | 0.4425 | 0.2478 | 0.233* | |
H16C | 0.6644 | 0.3541 | 0.3088 | 0.233* | |
C17 | 0.6555 (5) | 0.5320 (17) | 0.4098 (4) | 0.173 (6) | |
H17A | 0.6508 | 0.4363 | 0.4240 | 0.259* | |
H17B | 0.6231 | 0.5904 | 0.4400 | 0.259* | |
H17C | 0.7146 | 0.5599 | 0.4105 | 0.259* | |
C18 | 0.6407 (8) | 0.6965 (12) | 0.3132 (5) | 0.175 (5) | |
H18A | 0.7015 | 0.7115 | 0.3139 | 0.263* | |
H18B | 0.6132 | 0.7633 | 0.3424 | 0.263* | |
H18C | 0.6196 | 0.7075 | 0.2677 | 0.263* | |
C19 | 0.2448 (3) | 0.1860 (7) | 0.4193 (2) | 0.0733 (15) | |
H19 | 0.2402 | 0.1481 | 0.4654 | 0.088* | |
O20 | 0.2148 (2) | 0.0833 (5) | 0.37335 (18) | 0.0860 (12) | |
C21 | 0.1697 (4) | −0.0350 (9) | 0.4032 (3) | 0.099 (2) | |
H21 | 0.2024 | −0.0686 | 0.4424 | 0.118* | |
C22 | 0.1651 (6) | −0.1488 (9) | 0.3517 (4) | 0.117 (3) | |
H22A | 0.1470 | −0.2345 | 0.3738 | 0.141* | |
H22B | 0.2219 | −0.1644 | 0.3331 | 0.141* | |
C23 | 0.1036 (7) | −0.1158 (13) | 0.2942 (4) | 0.141 (4) | |
H23A | 0.1261 | −0.0396 | 0.2670 | 0.169* | |
H23B | 0.0971 | −0.1971 | 0.2652 | 0.169* | |
C24 | 0.0191 (6) | −0.0760 (14) | 0.3231 (5) | 0.153 (4) | |
H24A | −0.0055 | −0.1549 | 0.3471 | 0.184* | |
H24B | −0.0197 | −0.0496 | 0.2869 | 0.184* | |
C25 | 0.0308 (5) | 0.0476 (13) | 0.3724 (5) | 0.143 (4) | |
H25A | 0.0524 | 0.1280 | 0.3476 | 0.172* | |
H25B | −0.0242 | 0.0725 | 0.3919 | 0.172* | |
O26 | 0.0894 (3) | 0.0124 (7) | 0.4255 (2) | 0.1160 (17) | |
C27 | 0.1881 (4) | 0.3190 (8) | 0.4150 (3) | 0.0892 (19) | |
H27 | 0.1297 | 0.2906 | 0.4273 | 0.107* | |
N28 | 0.1840 (4) | 0.3743 (8) | 0.3432 (3) | 0.110 (2) | |
O29 | 0.2476 (3) | 0.3920 (8) | 0.3110 (3) | 0.135 (2) | |
O30 | 0.1129 (4) | 0.4028 (11) | 0.3218 (3) | 0.194 (4) | |
C31 | 0.2115 (5) | 0.4367 (11) | 0.4606 (4) | 0.104 (2) | |
O32 | 0.2205 (4) | 0.5543 (8) | 0.4431 (4) | 0.143 (2) | |
O33 | 0.2157 (3) | 0.3927 (6) | 0.5243 (2) | 0.1067 (15) | |
C34 | 0.2439 (11) | 0.4994 (13) | 0.5745 (5) | 0.188 (6) | |
H34A | 0.2957 | 0.5446 | 0.5582 | 0.225* | |
H34B | 0.1998 | 0.5702 | 0.5792 | 0.225* | |
C35 | 0.2591 (10) | 0.4413 (15) | 0.6345 (7) | 0.204 (6) | |
H35A | 0.2092 | 0.3909 | 0.6492 | 0.307* | |
H35B | 0.2724 | 0.5129 | 0.6670 | 0.307* | |
H35C | 0.3067 | 0.3781 | 0.6308 | 0.307* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0590 (17) | 0.083 (2) | 0.0645 (19) | 0.0041 (17) | 0.0043 (15) | 0.0023 (17) |
C2 | 0.062 (3) | 0.092 (4) | 0.063 (3) | 0.001 (3) | 0.003 (2) | −0.002 (3) |
C3 | 0.060 (3) | 0.088 (4) | 0.067 (3) | 0.002 (3) | 0.007 (2) | 0.015 (3) |
C4 | 0.067 (3) | 0.082 (3) | 0.059 (3) | 0.001 (3) | −0.002 (2) | 0.001 (3) |
C5 | 0.054 (2) | 0.093 (4) | 0.053 (2) | 0.000 (2) | 0.0011 (19) | −0.004 (2) |
O6 | 0.0667 (19) | 0.122 (3) | 0.075 (2) | −0.020 (2) | −0.0152 (18) | 0.030 (2) |
C7 | 0.072 (3) | 0.092 (4) | 0.070 (3) | −0.010 (3) | −0.014 (2) | 0.017 (3) |
O8 | 0.070 (2) | 0.104 (3) | 0.082 (2) | −0.018 (2) | −0.0152 (18) | 0.032 (2) |
C9 | 0.160 (9) | 0.090 (6) | 0.292 (15) | −0.005 (6) | −0.124 (10) | 0.046 (7) |
C10 | 0.115 (6) | 0.37 (2) | 0.091 (5) | −0.079 (10) | 0.017 (5) | −0.051 (8) |
O11 | 0.074 (2) | 0.084 (2) | 0.0693 (19) | −0.0028 (19) | 0.0122 (17) | 0.0124 (17) |
Si12 | 0.0864 (10) | 0.0890 (11) | 0.0821 (9) | −0.0053 (10) | −0.0054 (8) | 0.0167 (9) |
C13 | 0.180 (10) | 0.097 (6) | 0.221 (12) | 0.021 (6) | 0.074 (9) | 0.001 (7) |
C14 | 0.161 (8) | 0.161 (9) | 0.123 (6) | −0.035 (7) | −0.053 (6) | 0.056 (7) |
C15 | 0.107 (5) | 0.140 (6) | 0.075 (4) | −0.040 (5) | 0.012 (4) | 0.020 (4) |
C16 | 0.123 (7) | 0.198 (11) | 0.146 (8) | −0.020 (7) | 0.051 (6) | −0.017 (8) |
C17 | 0.105 (6) | 0.316 (17) | 0.097 (6) | −0.070 (8) | −0.027 (4) | 0.043 (8) |
C18 | 0.204 (11) | 0.182 (10) | 0.140 (8) | −0.114 (9) | −0.012 (7) | 0.043 (7) |
C19 | 0.055 (2) | 0.118 (5) | 0.046 (2) | −0.001 (3) | −0.0017 (19) | 0.005 (3) |
O20 | 0.078 (2) | 0.127 (3) | 0.0523 (18) | −0.021 (2) | −0.0011 (17) | 0.010 (2) |
C21 | 0.085 (4) | 0.145 (6) | 0.067 (3) | −0.019 (4) | −0.009 (3) | 0.013 (4) |
C22 | 0.135 (6) | 0.116 (6) | 0.101 (5) | −0.029 (5) | 0.007 (5) | 0.016 (5) |
C23 | 0.144 (8) | 0.188 (10) | 0.090 (5) | −0.059 (7) | −0.017 (5) | −0.007 (5) |
C24 | 0.112 (7) | 0.228 (12) | 0.119 (7) | −0.055 (7) | −0.033 (5) | 0.017 (7) |
C25 | 0.088 (5) | 0.213 (11) | 0.129 (7) | −0.014 (6) | −0.036 (5) | 0.006 (7) |
O26 | 0.089 (3) | 0.181 (5) | 0.078 (3) | −0.028 (3) | 0.007 (2) | 0.010 (3) |
C27 | 0.063 (3) | 0.141 (6) | 0.064 (3) | 0.015 (3) | 0.006 (2) | 0.015 (4) |
N28 | 0.080 (3) | 0.169 (6) | 0.080 (3) | 0.041 (4) | 0.001 (3) | 0.033 (4) |
O29 | 0.096 (3) | 0.208 (6) | 0.101 (3) | 0.043 (4) | 0.023 (3) | 0.067 (4) |
O30 | 0.095 (4) | 0.361 (12) | 0.125 (5) | 0.065 (5) | −0.021 (3) | 0.084 (6) |
C31 | 0.083 (4) | 0.132 (7) | 0.099 (5) | 0.043 (5) | 0.008 (4) | 0.005 (5) |
O32 | 0.157 (5) | 0.122 (5) | 0.152 (6) | 0.039 (4) | −0.002 (4) | 0.018 (4) |
O33 | 0.103 (3) | 0.138 (4) | 0.079 (3) | 0.026 (3) | 0.010 (2) | −0.013 (3) |
C34 | 0.318 (17) | 0.149 (9) | 0.096 (7) | 0.064 (10) | −0.028 (9) | −0.043 (7) |
C35 | 0.236 (14) | 0.219 (15) | 0.158 (11) | 0.051 (12) | −0.025 (10) | −0.081 (11) |
O1—C2 | 1.415 (6) | C17—H17A | 0.960 |
O1—C5 | 1.442 (6) | C17—H17B | 0.960 |
C2—O11 | 1.403 (6) | C17—H17C | 0.960 |
C2—C3 | 1.504 (8) | C18—H18A | 0.960 |
C2—H2 | 0.980 | C18—H18B | 0.960 |
C3—O6 | 1.428 (6) | C18—H18C | 0.960 |
C3—C4 | 1.542 (7) | C19—O20 | 1.414 (7) |
C3—H3 | 0.980 | C19—C27 | 1.552 (9) |
C4—O8 | 1.419 (6) | C19—H19 | 0.980 |
C4—C5 | 1.523 (8) | O20—C21 | 1.456 (8) |
C4—H4 | 0.980 | C21—O26 | 1.403 (9) |
C5—C19 | 1.499 (7) | C21—C22 | 1.488 (11) |
C5—H5 | 0.980 | C21—H21 | 0.980 |
O6—C7 | 1.401 (7) | C22—C23 | 1.517 (11) |
C7—O8 | 1.410 (6) | C22—H22A | 0.970 |
C7—C10 | 1.438 (10) | C22—H22B | 0.970 |
C7—C9 | 1.511 (11) | C23—C24 | 1.485 (14) |
C9—H9A | 0.960 | C23—H23A | 0.970 |
C9—H9B | 0.960 | C23—H23B | 0.970 |
C9—H9C | 0.960 | C24—C25 | 1.539 (15) |
C10—H10A | 0.960 | C24—H24A | 0.970 |
C10—H10B | 0.960 | C24—H24B | 0.970 |
C10—H10C | 0.960 | C25—O26 | 1.429 (9) |
O11—Si12 | 1.655 (4) | C25—H25A | 0.970 |
Si12—C13 | 1.849 (9) | C25—H25B | 0.970 |
Si12—C15 | 1.856 (7) | C27—C31 | 1.486 (12) |
Si12—C14 | 1.871 (8) | C27—N28 | 1.510 (8) |
C13—H13A | 0.960 | C27—H27 | 0.980 |
C13—H13B | 0.960 | N28—O29 | 1.188 (7) |
C13—H13C | 0.960 | N28—O30 | 1.217 (7) |
C14—H14A | 0.960 | C31—O32 | 1.184 (10) |
C14—H14B | 0.960 | C31—O33 | 1.323 (9) |
C14—H14C | 0.960 | O33—C34 | 1.487 (12) |
C15—C17 | 1.511 (10) | C34—C35 | 1.327 (15) |
C15—C16 | 1.521 (13) | C34—H34A | 0.970 |
C15—C18 | 1.545 (12) | C34—H34B | 0.970 |
C16—H16A | 0.960 | C35—H35A | 0.960 |
C16—H16B | 0.960 | C35—H35B | 0.960 |
C16—H16C | 0.960 | C35—H35C | 0.960 |
C2—O1—C5 | 105.2 (4) | C15—C17—H17A | 109.5 |
O11—C2—O1 | 110.1 (4) | C15—C17—H17B | 109.5 |
O11—C2—C3 | 108.6 (4) | H17A—C17—H17B | 109.5 |
O1—C2—C3 | 104.7 (4) | C15—C17—H17C | 109.5 |
O11—C2—H2 | 111.1 | H17A—C17—H17C | 109.5 |
O1—C2—H2 | 111.1 | H17B—C17—H17C | 109.5 |
C3—C2—H2 | 111.1 | C15—C18—H18A | 109.5 |
O6—C3—C2 | 110.1 (5) | C15—C18—H18B | 109.5 |
O6—C3—C4 | 104.7 (4) | H18A—C18—H18B | 109.5 |
C2—C3—C4 | 105.8 (4) | C15—C18—H18C | 109.5 |
O6—C3—H3 | 111.9 | H18A—C18—H18C | 109.5 |
C2—C3—H3 | 111.9 | H18B—C18—H18C | 109.5 |
C4—C3—H3 | 111.9 | O20—C19—C5 | 106.1 (4) |
O8—C4—C5 | 111.6 (4) | O20—C19—C27 | 110.2 (4) |
O8—C4—C3 | 104.5 (4) | C5—C19—C27 | 115.9 (5) |
C5—C4—C3 | 102.0 (4) | O20—C19—H19 | 108.1 |
O8—C4—H4 | 112.7 | C5—C19—H19 | 108.1 |
C5—C4—H4 | 112.7 | C27—C19—H19 | 108.1 |
C3—C4—H4 | 112.7 | C19—O20—C21 | 116.2 (4) |
O1—C5—C19 | 110.4 (4) | O26—C21—O20 | 107.8 (7) |
O1—C5—C4 | 104.7 (4) | O26—C21—C22 | 114.0 (6) |
C19—C5—C4 | 115.1 (5) | O20—C21—C22 | 108.5 (5) |
O1—C5—H5 | 108.8 | O26—C21—H21 | 108.8 |
C19—C5—H5 | 108.8 | O20—C21—H21 | 108.8 |
C4—C5—H5 | 108.8 | C22—C21—H21 | 108.8 |
C7—O6—C3 | 109.9 (4) | C21—C22—C23 | 112.8 (8) |
O6—C7—O8 | 107.0 (4) | C21—C22—H22A | 109.0 |
O6—C7—C10 | 110.3 (7) | C23—C22—H22A | 109.0 |
O8—C7—C10 | 111.3 (6) | C21—C22—H22B | 109.0 |
O6—C7—C9 | 107.5 (6) | C23—C22—H22B | 109.0 |
O8—C7—C9 | 108.2 (6) | H22A—C22—H22B | 107.8 |
C10—C7—C9 | 112.3 (9) | C24—C23—C22 | 109.1 (7) |
C7—O8—C4 | 109.8 (4) | C24—C23—H23A | 109.9 |
C7—C9—H9A | 109.5 | C22—C23—H23A | 109.9 |
C7—C9—H9B | 109.5 | C24—C23—H23B | 109.9 |
H9A—C9—H9B | 109.5 | C22—C23—H23B | 109.9 |
C7—C9—H9C | 109.5 | H23A—C23—H23B | 108.3 |
H9A—C9—H9C | 109.5 | C23—C24—C25 | 109.5 (7) |
H9B—C9—H9C | 109.5 | C23—C24—H24A | 109.8 |
C7—C10—H10A | 109.5 | C25—C24—H24A | 109.8 |
C7—C10—H10B | 109.5 | C23—C24—H24B | 109.8 |
H10A—C10—H10B | 109.5 | C25—C24—H24B | 109.8 |
C7—C10—H10C | 109.5 | H24A—C24—H24B | 108.2 |
H10A—C10—H10C | 109.5 | O26—C25—C24 | 110.9 (9) |
H10B—C10—H10C | 109.5 | O26—C25—H25A | 109.5 |
C2—O11—Si12 | 126.9 (4) | C24—C25—H25A | 109.5 |
O11—Si12—C13 | 109.0 (4) | O26—C25—H25B | 109.5 |
O11—Si12—C15 | 106.8 (3) | C24—C25—H25B | 109.5 |
C13—Si12—C15 | 112.3 (5) | H25A—C25—H25B | 108.1 |
O11—Si12—C14 | 108.0 (4) | C21—O26—C25 | 114.6 (6) |
C13—Si12—C14 | 110.9 (6) | C31—C27—N28 | 108.1 (7) |
C15—Si12—C14 | 109.8 (4) | C31—C27—C19 | 116.6 (5) |
Si12—C13—H13A | 109.5 | N28—C27—C19 | 111.2 (5) |
Si12—C13—H13B | 109.5 | C31—C27—H27 | 106.8 |
H13A—C13—H13B | 109.5 | N28—C27—H27 | 106.8 |
Si12—C13—H13C | 109.5 | C19—C27—H27 | 106.8 |
H13A—C13—H13C | 109.5 | O29—N28—O30 | 122.9 (6) |
H13B—C13—H13C | 109.5 | O29—N28—C27 | 120.9 (5) |
Si12—C14—H14A | 109.5 | O30—N28—C27 | 116.2 (6) |
Si12—C14—H14B | 109.5 | O32—C31—O33 | 124.9 (9) |
H14A—C14—H14B | 109.5 | O32—C31—C27 | 124.9 (8) |
Si12—C14—H14C | 109.5 | O33—C31—C27 | 110.1 (8) |
H14A—C14—H14C | 109.5 | C31—O33—C34 | 115.2 (8) |
H14B—C14—H14C | 109.5 | C35—C34—O33 | 111.0 (12) |
C17—C15—C16 | 112.5 (9) | C35—C34—H34A | 109.4 |
C17—C15—C18 | 108.3 (8) | O33—C34—H34A | 109.4 |
C16—C15—C18 | 107.3 (8) | C35—C34—H34B | 109.4 |
C17—C15—Si12 | 109.8 (5) | O33—C34—H34B | 109.4 |
C16—C15—Si12 | 109.0 (6) | H34A—C34—H34B | 108.0 |
C18—C15—Si12 | 109.9 (7) | C34—C35—H35A | 109.5 |
C15—C16—H16A | 109.5 | C34—C35—H35B | 109.5 |
C15—C16—H16B | 109.5 | H35A—C35—H35B | 109.5 |
H16A—C16—H16B | 109.5 | C34—C35—H35C | 109.5 |
C15—C16—H16C | 109.5 | H35A—C35—H35C | 109.5 |
H16A—C16—H16C | 109.5 | H35B—C35—H35C | 109.5 |
H16B—C16—H16C | 109.5 | ||
C5—O1—C2—O11 | 76.7 (5) | C14—Si12—C15—C16 | −53.3 (8) |
C5—O1—C2—C3 | −39.8 (5) | O11—Si12—C15—C18 | −179.2 (6) |
O11—C2—C3—O6 | 151.5 (4) | C13—Si12—C15—C18 | −59.8 (7) |
O1—C2—C3—O6 | −90.9 (5) | C14—Si12—C15—C18 | 64.0 (8) |
O11—C2—C3—C4 | −95.9 (5) | O1—C5—C19—O20 | 168.6 (4) |
O1—C2—C3—C4 | 21.7 (5) | C4—C5—C19—O20 | −73.1 (5) |
O6—C3—C4—O8 | 3.3 (6) | O1—C5—C19—C27 | 45.9 (6) |
C2—C3—C4—O8 | −113.0 (5) | C4—C5—C19—C27 | 164.2 (4) |
O6—C3—C4—C5 | 119.7 (4) | C5—C19—O20—C21 | 127.8 (5) |
C2—C3—C4—C5 | 3.3 (5) | C27—C19—O20—C21 | −105.9 (6) |
C2—O1—C5—C19 | 166.9 (4) | C19—O20—C21—O26 | 71.9 (6) |
C2—O1—C5—C4 | 42.4 (5) | C19—O20—C21—C22 | −164.1 (5) |
O8—C4—C5—O1 | 84.2 (5) | O26—C21—C22—C23 | 48.8 (9) |
C3—C4—C5—O1 | −26.8 (5) | O20—C21—C22—C23 | −71.3 (8) |
O8—C4—C5—C19 | −37.1 (6) | C21—C22—C23—C24 | −52.3 (11) |
C3—C4—C5—C19 | −148.2 (4) | C22—C23—C24—C25 | 56.2 (11) |
C2—C3—O6—C7 | 122.7 (5) | C23—C24—C25—O26 | −58.1 (11) |
C4—C3—O6—C7 | 9.4 (6) | O20—C21—O26—C25 | 69.9 (8) |
C3—O6—C7—O8 | −18.8 (6) | C22—C21—O26—C25 | −50.6 (10) |
C3—O6—C7—C10 | −140.0 (7) | C24—C25—O26—C21 | 54.9 (10) |
C3—O6—C7—C9 | 97.3 (6) | O20—C19—C27—C31 | 179.8 (5) |
O6—C7—O8—C4 | 21.1 (7) | C5—C19—C27—C31 | −59.7 (7) |
C10—C7—O8—C4 | 141.7 (8) | O20—C19—C27—N28 | −55.6 (6) |
C9—C7—O8—C4 | −94.4 (7) | C5—C19—C27—N28 | 64.9 (7) |
C5—C4—O8—C7 | −124.3 (5) | C31—C27—N28—O29 | 79.4 (9) |
C3—C4—O8—C7 | −14.8 (6) | C19—C27—N28—O29 | −49.8 (10) |
O1—C2—O11—Si12 | 82.7 (5) | C31—C27—N28—O30 | −98.5 (9) |
C3—C2—O11—Si12 | −163.2 (4) | C19—C27—N28—O30 | 132.2 (8) |
C2—O11—Si12—C13 | −19.6 (6) | N28—C27—C31—O32 | 3.7 (10) |
C2—O11—Si12—C15 | 101.9 (5) | C19—C27—C31—O32 | 129.9 (8) |
C2—O11—Si12—C14 | −140.2 (5) | N28—C27—C31—O33 | 179.9 (5) |
O11—Si12—C15—C17 | −60.2 (9) | C19—C27—C31—O33 | −54.0 (7) |
C13—Si12—C15—C17 | 59.2 (9) | O32—C31—O33—C34 | −7.5 (12) |
C14—Si12—C15—C17 | −177.0 (9) | C27—C31—O33—C34 | 176.4 (8) |
O11—Si12—C15—C16 | 63.5 (6) | C31—O33—C34—C35 | −170.2 (11) |
C13—Si12—C15—C16 | −177.1 (7) |
Experimental details
Crystal data | |
Chemical formula | C23H41NO10Si |
Mr | 519.66 |
Crystal system, space group | Orthorhombic, P212121 |
Temperature (K) | 293 |
a, b, c (Å) | 15.593 (3), 9.563 (4), 19.690 (3) |
V (Å3) | 2935.9 (15) |
Z | 4 |
Radiation type | Cu Kα |
µ (mm−1) | 1.13 |
Crystal size (mm) | 0.48 × 0.40 × 0.32 |
Data collection | |
Diffractometer | Enraf–Nonius TurboCAD-4 diffractometer |
Absorption correction | ψ scan (North et al., 1968) |
Tmin, Tmax | 0.614, 0.714 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 6473, 5898, 3434 |
Rint | 0.037 |
(sin θ/λ)max (Å−1) | 0.621 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.066, 0.264, 1.11 |
No. of reflections | 5898 |
No. of parameters | 325 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.22, −0.27 |
Absolute structure | Flack (1983), 2569 Friedel pairs |
Absolute structure parameter | 0.04 (8) |
Computer programs: CAD-4 EXPRESS (Enraf–Nonius, 1994), XCAD4 (Harms & Wocadlo, 1995), SIR97 (Altomare et al., 1999), SHELXL97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 1997), WinGX (Farrugia, 1999).
Acknowledgements
We gratefully acknowledge the Spanish Education Secretary and the Xunta de Galicia for financial support and the Spanish Education Secretary for a grant to RGS. Intensity measurements were performed at the Unidade de Raios X, RIAIDT, University of Santiago de Compostela.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Nitro-sugars are very important as precursors of a wide range of natural and synthetic products with relevant properties (Gruner et al., 2002), as aminopoliols (Lillelund et al.., 2002; Ogawa et al., 2005), polyhydroxylated amino acids (Chakraborty et al.., 2002), etc. The title nitro-sugar compound (3), C23H41NO10Si, is the product of the Henry reaction (Soengas et al., 2003a) of 1-O-tert-butyldimethylsilyl-2,3-O-isopropylidene-a-D-lyxo-pentadialdo-1,4-furanose (1) (Brewster et al., 1987) with ethyl nitroacetate to give ethyl 1-O-tert-butyldimethylsilyl-2,3-O-isopropylidene-D-glycero-a-D-manno-heptofuronate (2) and the subsequent protection of its C5 hydroxy group as tetrahydropyranyl (Soengas et al., 2003b), in order to avoid the retro Henry reaction. The molecular structure is represented in Fig. 1. Bond lengths and angles are within the expected values. The tetrahydropyranyl group adopts a chair conformation. The absolute configuration was assumed from the synthesis and confirmed by the X-ray crystal structure determination.