metal-organic compounds
Dibromido[N-propyl-N′-(2-pyridylmethylidene)ethane-1,2-diamine]zinc(II)
aKey Laboratory of Surface and Interface Science of Henan, School of Materials and Chemical Engineering, Zhengzhou University of Light Industry, Zhengzhou 450002, People's Republic of China
*Correspondence e-mail: xuewen_zhu@126.com
The title complex, [ZnBr2(C11H17N3)], is a mononuclear zinc(II) compound derived from the Schiff base N-propyl-N′-(1-pyridin-2-ylmethylidene)ethane-1,2-diamine. The ZnII atom is five-coordinate, binding to the imine N, pyridine N, and amine N atoms of the Schiff base ligand and to two bromide anions in a distorted trigonal-bipyramidal coordination geometry. Adjacent molecules are linked through intermolecular N—H⋯Br hydrogen bonds, forming dimers.
Related literature
For background to the chemistry of Schiff base complexes, see: Ali et al. (2008); Biswas et al. (2008); Chen et al. (2008); Darensbourg & Frantz (2007); Habibi et al. (2007); Kawamoto et al. (2008); Lipscomb & Sträter (1996); Tomat et al. (2007); Wu et al. (2008); Yuan et al. (2007). For related structures, see: Dapporto et al. (2001); You & Zhu (2006).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2004); cell SAINT (Bruker, 2004); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536808023660/sj2523sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536808023660/sj2523Isup2.hkl
The Schiff base compound was prepared by the condensation of equimolar amounts of pyridine-2-carbaldehyde with N-propylethane-1,2-diamine in a methanol solution. The complex was prepared by the following method. To an anhydrous methanol solution (5 ml) of ZnBr2 (22.5 mg, 0.1 mmol) was added a methanol solution (10 ml) of the Schiff base compound (19.1 mg, 0.1 mmol) with stirring. The mixture was stirred for 30 min at room temperature and filtered. Upon keeping the filtrate in air for a few days, colorless block-shaped crystals formed at the bottom of the vessel on slow evaporation of the solvent.
H3A attached to N3 was located from a difference Fourier map and refined isotropically, with the N–H distance restrained to 0.90 (1) Å, and with Uiso(H) fixed at 0.08 Å2. Other H atoms were placed in geometrically idealized positions and constrained to ride on their parent atoms, with C–H distances in the range 0.93–0.97Å and with Uiso(H) = 1.2Ueq(C) and 1.5Ueq(methyl C).
Data collection: APEX2 (Bruker, 2004); cell
SAINT (Bruker, 2004); data reduction: SAINT (Bruker, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. The molecular structure of (I) with ellipsoids drawn at the 30% probability level. | |
Fig. 2. The crystal packing of (I), viewed along the a axis. |
[ZnBr2(C11H17N3)] | F(000) = 816 |
Mr = 416.47 | Dx = 1.864 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 1994 reflections |
a = 8.252 (4) Å | θ = 2.2–25.3° |
b = 12.249 (5) Å | µ = 7.02 mm−1 |
c = 14.726 (6) Å | T = 298 K |
β = 94.562 (7)° | Block, colorless |
V = 1483.8 (11) Å3 | 0.32 × 0.30 × 0.30 mm |
Z = 4 |
Bruker APEXII CCD area-detector diffractometer | 3378 independent reflections |
Radiation source: fine-focus sealed tube | 2167 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.083 |
ω scans | θmax = 27.5°, θmin = 2.2° |
Absorption correction: multi-scan (SADABS; Sheldrick, 2004) | h = −10→10 |
Tmin = 0.212, Tmax = 0.227 | k = −15→15 |
12333 measured reflections | l = −18→19 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.045 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.105 | w = 1/[σ2(Fo2) + (0.0211P)2] where P = (Fo2 + 2Fc2)/3 |
S = 1.01 | (Δ/σ)max = 0.001 |
3378 reflections | Δρmax = 0.91 e Å−3 |
159 parameters | Δρmin = −0.80 e Å−3 |
1 restraint | Extinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0140 (7) |
[ZnBr2(C11H17N3)] | V = 1483.8 (11) Å3 |
Mr = 416.47 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 8.252 (4) Å | µ = 7.02 mm−1 |
b = 12.249 (5) Å | T = 298 K |
c = 14.726 (6) Å | 0.32 × 0.30 × 0.30 mm |
β = 94.562 (7)° |
Bruker APEXII CCD area-detector diffractometer | 3378 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2004) | 2167 reflections with I > 2σ(I) |
Tmin = 0.212, Tmax = 0.227 | Rint = 0.083 |
12333 measured reflections |
R[F2 > 2σ(F2)] = 0.045 | 1 restraint |
wR(F2) = 0.105 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.01 | Δρmax = 0.91 e Å−3 |
3378 reflections | Δρmin = −0.80 e Å−3 |
159 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Zn1 | 0.04170 (7) | 0.30316 (4) | 0.86078 (4) | 0.02971 (19) | |
Br1 | −0.19476 (6) | 0.34399 (5) | 0.94074 (4) | 0.0454 (2) | |
Br2 | 0.00560 (8) | 0.29983 (5) | 0.69779 (4) | 0.0524 (2) | |
N1 | 0.0385 (5) | 0.1154 (3) | 0.8679 (3) | 0.0359 (10) | |
N2 | 0.2385 (5) | 0.2563 (3) | 0.9510 (3) | 0.0338 (10) | |
N3 | 0.1741 (5) | 0.4581 (3) | 0.8836 (3) | 0.0296 (9) | |
C1 | 0.1561 (6) | 0.0745 (4) | 0.9254 (3) | 0.0351 (12) | |
C2 | 0.1774 (8) | −0.0353 (4) | 0.9398 (4) | 0.0495 (15) | |
H2 | 0.2599 | −0.0611 | 0.9810 | 0.059* | |
C3 | 0.0742 (9) | −0.1061 (5) | 0.8922 (5) | 0.0606 (18) | |
H3 | 0.0849 | −0.1811 | 0.9009 | 0.073* | |
C4 | −0.0449 (8) | −0.0652 (5) | 0.8318 (5) | 0.0575 (17) | |
H4 | −0.1150 | −0.1117 | 0.7978 | 0.069* | |
C5 | −0.0591 (7) | 0.0466 (5) | 0.8222 (4) | 0.0489 (15) | |
H5 | −0.1412 | 0.0743 | 0.7818 | 0.059* | |
C6 | 0.2635 (6) | 0.1575 (4) | 0.9712 (4) | 0.0367 (12) | |
H6 | 0.3474 | 0.1373 | 1.0138 | 0.044* | |
C7 | 0.3456 (6) | 0.3442 (4) | 0.9865 (4) | 0.0396 (13) | |
H7A | 0.4553 | 0.3172 | 1.0003 | 0.048* | |
H7B | 0.3068 | 0.3745 | 1.0417 | 0.048* | |
C8 | 0.3422 (6) | 0.4295 (4) | 0.9126 (4) | 0.0375 (13) | |
H8A | 0.4004 | 0.4941 | 0.9352 | 0.045* | |
H8B | 0.3958 | 0.4016 | 0.8611 | 0.045* | |
C9 | 0.1638 (6) | 0.5399 (4) | 0.8098 (4) | 0.0400 (13) | |
H9A | 0.1939 | 0.5061 | 0.7540 | 0.048* | |
H9B | 0.2404 | 0.5984 | 0.8252 | 0.048* | |
C10 | −0.0046 (6) | 0.5869 (4) | 0.7943 (4) | 0.0426 (14) | |
H10A | −0.0825 | 0.5278 | 0.7857 | 0.051* | |
H10B | −0.0298 | 0.6277 | 0.8478 | 0.051* | |
C11 | −0.0207 (7) | 0.6607 (5) | 0.7126 (4) | 0.0641 (19) | |
H11A | 0.0663 | 0.7129 | 0.7167 | 0.096* | |
H11B | −0.1230 | 0.6983 | 0.7108 | 0.096* | |
H11C | −0.0158 | 0.6180 | 0.6582 | 0.096* | |
H3A | 0.130 (7) | 0.491 (4) | 0.930 (3) | 0.080* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Zn1 | 0.0321 (3) | 0.0296 (3) | 0.0266 (3) | 0.0004 (2) | −0.0029 (2) | −0.0032 (3) |
Br1 | 0.0399 (3) | 0.0451 (4) | 0.0526 (4) | −0.0043 (2) | 0.0125 (3) | −0.0179 (3) |
Br2 | 0.0811 (5) | 0.0481 (4) | 0.0263 (3) | 0.0018 (3) | −0.0070 (3) | −0.0066 (3) |
N1 | 0.043 (3) | 0.033 (2) | 0.031 (3) | −0.003 (2) | 0.002 (2) | −0.001 (2) |
N2 | 0.039 (3) | 0.032 (2) | 0.029 (2) | 0.000 (2) | −0.003 (2) | 0.001 (2) |
N3 | 0.036 (2) | 0.027 (2) | 0.026 (2) | −0.0041 (17) | 0.0009 (19) | −0.0019 (18) |
C1 | 0.046 (3) | 0.031 (3) | 0.029 (3) | 0.002 (2) | 0.010 (2) | 0.005 (2) |
C2 | 0.065 (4) | 0.035 (3) | 0.050 (4) | 0.007 (3) | 0.013 (3) | 0.009 (3) |
C3 | 0.087 (5) | 0.028 (3) | 0.071 (5) | 0.002 (3) | 0.032 (4) | 0.004 (3) |
C4 | 0.070 (4) | 0.037 (4) | 0.067 (5) | −0.010 (3) | 0.019 (4) | −0.010 (3) |
C5 | 0.044 (3) | 0.047 (4) | 0.056 (4) | −0.006 (3) | 0.000 (3) | −0.011 (3) |
C6 | 0.041 (3) | 0.038 (3) | 0.030 (3) | 0.008 (2) | −0.002 (2) | 0.000 (2) |
C7 | 0.042 (3) | 0.040 (3) | 0.035 (3) | −0.001 (2) | −0.011 (3) | −0.002 (3) |
C8 | 0.037 (3) | 0.033 (3) | 0.041 (3) | −0.008 (2) | −0.002 (2) | −0.003 (3) |
C9 | 0.046 (3) | 0.033 (3) | 0.041 (3) | −0.009 (2) | 0.005 (3) | 0.004 (3) |
C10 | 0.044 (3) | 0.032 (3) | 0.052 (4) | 0.002 (2) | 0.003 (3) | 0.007 (3) |
C11 | 0.065 (4) | 0.054 (4) | 0.071 (5) | 0.004 (3) | −0.004 (4) | 0.030 (3) |
Zn1—N2 | 2.095 (4) | C4—C5 | 1.380 (8) |
Zn1—N3 | 2.202 (4) | C4—H4 | 0.9300 |
Zn1—N1 | 2.303 (4) | C5—H5 | 0.9300 |
Zn1—Br2 | 2.3954 (13) | C6—H6 | 0.9300 |
Zn1—Br1 | 2.4102 (11) | C7—C8 | 1.508 (7) |
N1—C5 | 1.313 (6) | C7—H7A | 0.9700 |
N1—C1 | 1.334 (6) | C7—H7B | 0.9700 |
N2—C6 | 1.259 (6) | C8—H8A | 0.9700 |
N2—C7 | 1.463 (6) | C8—H8B | 0.9700 |
N3—C8 | 1.461 (6) | C9—C10 | 1.505 (7) |
N3—C9 | 1.477 (6) | C9—H9A | 0.9700 |
N3—H3A | 0.90 (5) | C9—H9B | 0.9700 |
C1—C2 | 1.371 (7) | C10—C11 | 1.501 (7) |
C1—C6 | 1.475 (7) | C10—H10A | 0.9700 |
C2—C3 | 1.369 (8) | C10—H10B | 0.9700 |
C2—H2 | 0.9300 | C11—H11A | 0.9600 |
C3—C4 | 1.367 (8) | C11—H11B | 0.9600 |
C3—H3 | 0.9300 | C11—H11C | 0.9600 |
N2—Zn1—N3 | 77.83 (16) | N1—C5—H5 | 118.7 |
N2—Zn1—N1 | 73.04 (15) | C4—C5—H5 | 118.7 |
N3—Zn1—N1 | 149.43 (15) | N2—C6—C1 | 118.2 (5) |
N2—Zn1—Br2 | 131.24 (11) | N2—C6—H6 | 120.9 |
N3—Zn1—Br2 | 100.86 (11) | C1—C6—H6 | 120.9 |
N1—Zn1—Br2 | 91.57 (11) | N2—C7—C8 | 106.0 (4) |
N2—Zn1—Br1 | 111.33 (12) | N2—C7—H7A | 110.5 |
N3—Zn1—Br1 | 99.08 (11) | C8—C7—H7A | 110.5 |
N1—Zn1—Br1 | 99.94 (11) | N2—C7—H7B | 110.5 |
Br2—Zn1—Br1 | 116.88 (4) | C8—C7—H7B | 110.5 |
C5—N1—C1 | 118.1 (5) | H7A—C7—H7B | 108.7 |
C5—N1—Zn1 | 128.8 (4) | N3—C8—C7 | 109.8 (4) |
C1—N1—Zn1 | 113.1 (3) | N3—C8—H8A | 109.7 |
C6—N2—C7 | 122.7 (4) | C7—C8—H8A | 109.7 |
C6—N2—Zn1 | 121.2 (3) | N3—C8—H8B | 109.7 |
C7—N2—Zn1 | 116.1 (3) | C7—C8—H8B | 109.7 |
C8—N3—C9 | 112.0 (4) | H8A—C8—H8B | 108.2 |
C8—N3—Zn1 | 106.6 (3) | N3—C9—C10 | 111.7 (4) |
C9—N3—Zn1 | 118.3 (3) | N3—C9—H9A | 109.3 |
C8—N3—H3A | 109 (4) | C10—C9—H9A | 109.3 |
C9—N3—H3A | 105 (4) | N3—C9—H9B | 109.3 |
Zn1—N3—H3A | 106 (4) | C10—C9—H9B | 109.3 |
N1—C1—C2 | 122.9 (5) | H9A—C9—H9B | 107.9 |
N1—C1—C6 | 114.3 (4) | C11—C10—C9 | 111.9 (5) |
C2—C1—C6 | 122.7 (5) | C11—C10—H10A | 109.2 |
C3—C2—C1 | 118.4 (6) | C9—C10—H10A | 109.2 |
C3—C2—H2 | 120.8 | C11—C10—H10B | 109.2 |
C1—C2—H2 | 120.8 | C9—C10—H10B | 109.2 |
C4—C3—C2 | 119.1 (6) | H10A—C10—H10B | 107.9 |
C4—C3—H3 | 120.5 | C10—C11—H11A | 109.5 |
C2—C3—H3 | 120.5 | C10—C11—H11B | 109.5 |
C3—C4—C5 | 118.8 (6) | H11A—C11—H11B | 109.5 |
C3—C4—H4 | 120.6 | C10—C11—H11C | 109.5 |
C5—C4—H4 | 120.6 | H11A—C11—H11C | 109.5 |
N1—C5—C4 | 122.7 (6) | H11B—C11—H11C | 109.5 |
D—H···A | D—H | H···A | D···A | D—H···A |
N3—H3A···Br1i | 0.90 (5) | 2.80 (4) | 3.539 (4) | 141 (5) |
Symmetry code: (i) −x, −y+1, −z+2. |
Experimental details
Crystal data | |
Chemical formula | [ZnBr2(C11H17N3)] |
Mr | 416.47 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 298 |
a, b, c (Å) | 8.252 (4), 12.249 (5), 14.726 (6) |
β (°) | 94.562 (7) |
V (Å3) | 1483.8 (11) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 7.02 |
Crystal size (mm) | 0.32 × 0.30 × 0.30 |
Data collection | |
Diffractometer | Bruker APEXII CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 2004) |
Tmin, Tmax | 0.212, 0.227 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 12333, 3378, 2167 |
Rint | 0.083 |
(sin θ/λ)max (Å−1) | 0.650 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.045, 0.105, 1.01 |
No. of reflections | 3378 |
No. of parameters | 159 |
No. of restraints | 1 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.91, −0.80 |
Computer programs: APEX2 (Bruker, 2004), SAINT (Bruker, 2004), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
Zn1—N2 | 2.095 (4) | Zn1—Br2 | 2.3954 (13) |
Zn1—N3 | 2.202 (4) | Zn1—Br1 | 2.4102 (11) |
Zn1—N1 | 2.303 (4) | ||
N2—Zn1—N3 | 77.83 (16) | N1—Zn1—Br2 | 91.57 (11) |
N2—Zn1—N1 | 73.04 (15) | N2—Zn1—Br1 | 111.33 (12) |
N3—Zn1—N1 | 149.43 (15) | N3—Zn1—Br1 | 99.08 (11) |
N2—Zn1—Br2 | 131.24 (11) | N1—Zn1—Br1 | 99.94 (11) |
N3—Zn1—Br2 | 100.86 (11) | Br2—Zn1—Br1 | 116.88 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
N3—H3A···Br1i | 0.90 (5) | 2.80 (4) | 3.539 (4) | 141 (5) |
Symmetry code: (i) −x, −y+1, −z+2. |
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Schiff bases have widely been used as versatile ligands in coordination chemistry (Biswas et al., 2008; Wu et al., 2008; Kawamoto et al., 2008; Ali et al., 2008; Habibi et al., 2007), and their metal complexes are of great interest in many fields (Chen et al., 2008; Yuan et al., 2007; Tomat et al., 2007; Darensbourg & Frantz, 2007). Zinc(II) is an important element in biological systems, functions as the active site of hydrolytic enzymes, such as carboxypeptidase and carbonic anhydrase where it is in a hard-donor coordination environment of nitrogen and oxygen ligands (Lipscomb & Sträter, 1996). In this paper, a new zinc(II) complex, (I), Fig. 1, with the Schiff base ligand N-propyl-N'-(1-pyridin-2-ylmethylidene)ethane-1,2-diamine has been synthesized and structurally characterized.
The ZnII atom in (I) is five-coordinated by one imine N, one pyridine N, and one amine N atoms of the Schiff base ligand, and by two Br- anions, in a distorted trigonal-bipyramidal coordination geometry. The coordinate bond lengths (Table 1) are typical and comparable to the corresponding values observed in similar zinc(II) Schiff base complexes (You & Zhu, 2006; Dapporto et al., 2001). The bond angle N1—Zn1—N3 in the complex is 149.43 (15)° indicating a significant distortion from trigonal-bipyramidal coordination.
In the crystal structure, adjacent molecules are linked through intermolecular N–H···Br hydrogen bonds (Table 2), forming dimers (Fig. 2).