organic compounds
1-{2-Phenyl-2-[4-(trifluoromethyl)benzyloxy]ethyl}-1H-benzimidazole
aZonguldak Karaelmas University, Department of Chemistry, 67100 Zonguldak, Turkey, bSouthampton University, Department of Chemistry, Southampton SO17 1BJ, England, and cHacettepe University, Department of Physics, 06800 Beytepe, Ankara, Turkey
*Correspondence e-mail: merzifon@hacettepe.edu.tr
The 23H19F3N2O, contains two independent molecules. In the two molecules the planar benzimidazole ring systems are oriented with respect to the phenyl/trifluoromethylbenzene rings at dihedral angles of 9.62 (6)/78.63 (7) and 2.53 (8)/83.83 (9)°. In the intermolecular C—H⋯N hydrogen bonds link the molecules into R22(6) dimers. The molecules are elongated along [001] and stacked along the b axis.
of the of the title compound, CRelated literature
For general background, see: Brammer & Feczko (1988); Özel Güven et al. (2007a,b). For related literature, see: Song & Shin (1998); Freer et al. (1986); Peeters et al. (1996, 1979a,b); Caira et al. (2004); Özel Güven et al. (2008a,b). For ring motif details, see: Bernstein et al. (1995).
Experimental
Crystal data
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Refinement
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Data collection: COLLECT (Nonius, 1998); cell DENZO (Otwinowski & Minor, 1997) and COLLECT; data reduction: DENZO and COLLECT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).
Supporting information
10.1107/S1600536808024033/xu2445sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536808024033/xu2445Isup2.hkl
The title compound was synthesized by the reaction of 2-(1H-benzimidazol-1-yl)-1-phenylethanol (Özel Güven et al., 2007a) with NaH and appropriate benzyl halide. To the solution of alcohol (300 mg, 1.259 mmol) in DMF (2.4 ml) was added NaH (63 mg, 1.574 mmol) in small fractions. The appropriate benzyl halide (300 mg, 1.259 mmol) in DMF (1.2 ml) was added dropwise. The mixture was stirred at room temperature for 2 h and excess hydride was decomposed with a small amount of methyl alcohol. After evaporation to dryness under reduced pressure, the crude residue was suspended with water and extracted with methylene chloride. The organic layer was dried over anhydrous sodium sulfate, and then evaporated to dryness. The crude residue was purified by
on a silica-gel column using chloroform–methanol as Crystals suitable for X-ray analysis were obtained by the recrystallization of the ether from a mixture of hexane/ethyl acetate (1:2) (yield; 296 mg, 59%).H atoms were positioned geometrically, with C—H = 0.93, 0.98 and 0.97 Å for aromatic, methine and methylene H, respectively, and constrained to ride on their parent atoms with Uiso(H) = 1.2Ueq(C).
Data collection: COLLECT (Nonius, 1998); cell
DENZO (Otwinowski & Minor, 1997) and COLLECT (Nonius, 1998); data reduction: DENZO (Otwinowski & Minor, 1997) and COLLECT (Nonius, 1998); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).C23H19F3N2O | F(000) = 3296 |
Mr = 396.40 | Dx = 1.327 Mg m−3 |
Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -C 2yc | Cell parameters from 8156 reflections |
a = 39.3006 (15) Å | θ = 2.9–27.5° |
b = 9.5834 (2) Å | µ = 0.10 mm−1 |
c = 23.0120 (9) Å | T = 120 K |
β = 113.668 (1)° | Shard, colourless |
V = 7938.1 (5) Å3 | 0.35 × 0.2 × 0.14 mm |
Z = 16 |
Bruker Nonius KappaCCD diffractometer | 8735 independent reflections |
Radiation source: fine-focus sealed tube | 5066 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.072 |
Detector resolution: 9.091 pixels mm-1 | θmax = 27.5°, θmin = 3.1° |
ϕ and ω scans | h = −50→39 |
Absorption correction: multi-scan (SADABS; Sheldrick, 2007) | k = −10→11 |
Tmin = 0.974, Tmax = 0.984 | l = −29→29 |
28014 measured reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.081 | H-atom parameters constrained |
wR(F2) = 0.227 | w = 1/[σ2(Fo2) + (0.117P)2 + 2.4537P] where P = (Fo2 + 2Fc2)/3 |
S = 1.06 | (Δ/σ)max < 0.001 |
8735 reflections | Δρmax = 0.62 e Å−3 |
524 parameters | Δρmin = −0.59 e Å−3 |
0 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0062 (4) |
C23H19F3N2O | V = 7938.1 (5) Å3 |
Mr = 396.40 | Z = 16 |
Monoclinic, C2/c | Mo Kα radiation |
a = 39.3006 (15) Å | µ = 0.10 mm−1 |
b = 9.5834 (2) Å | T = 120 K |
c = 23.0120 (9) Å | 0.35 × 0.2 × 0.14 mm |
β = 113.668 (1)° |
Bruker Nonius KappaCCD diffractometer | 8735 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2007) | 5066 reflections with I > 2σ(I) |
Tmin = 0.974, Tmax = 0.984 | Rint = 0.072 |
28014 measured reflections |
R[F2 > 2σ(F2)] = 0.081 | 0 restraints |
wR(F2) = 0.227 | H-atom parameters constrained |
S = 1.06 | Δρmax = 0.62 e Å−3 |
8735 reflections | Δρmin = −0.59 e Å−3 |
524 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
F1 | −0.00131 (8) | 0.4243 (2) | 0.64336 (15) | 0.0898 (10) | |
F2 | 0.01662 (7) | 0.6106 (3) | 0.69271 (12) | 0.0802 (8) | |
F3 | −0.02789 (6) | 0.6169 (3) | 0.60373 (13) | 0.0929 (10) | |
O | 0.10852 (5) | 0.78467 (16) | 0.49859 (8) | 0.0227 (4) | |
N1 | 0.15853 (6) | 1.0225 (2) | 0.52907 (10) | 0.0225 (5) | |
N2 | 0.17053 (6) | 1.1149 (2) | 0.62514 (11) | 0.0299 (6) | |
C1 | 0.14498 (8) | 1.0792 (3) | 0.56973 (13) | 0.0268 (6) | |
H1 | 0.1197 | 1.0917 | 0.5591 | 0.032* | |
C2 | 0.20392 (7) | 1.0775 (3) | 0.62118 (13) | 0.0251 (6) | |
C3 | 0.24023 (8) | 1.0885 (3) | 0.66600 (14) | 0.0329 (7) | |
H3 | 0.2455 | 1.1252 | 0.7061 | 0.039* | |
C4 | 0.26834 (8) | 1.0430 (3) | 0.64890 (15) | 0.0386 (8) | |
H4 | 0.2928 | 1.0494 | 0.6782 | 0.046* | |
C5 | 0.26089 (8) | 0.9874 (3) | 0.58851 (15) | 0.0347 (7) | |
H5 | 0.2805 | 0.9588 | 0.5786 | 0.042* | |
C6 | 0.22489 (7) | 0.9744 (3) | 0.54353 (14) | 0.0278 (6) | |
H6 | 0.2197 | 0.9371 | 0.5036 | 0.033* | |
C7 | 0.19684 (7) | 1.0200 (2) | 0.56120 (13) | 0.0235 (6) | |
C8 | 0.13789 (7) | 0.9648 (3) | 0.46651 (12) | 0.0240 (6) | |
H8A | 0.1507 | 0.9866 | 0.4393 | 0.029* | |
H8B | 0.1135 | 1.0077 | 0.4483 | 0.029* | |
C9 | 0.13351 (7) | 0.8071 (2) | 0.46865 (12) | 0.0218 (6) | |
H9 | 0.1576 | 0.7659 | 0.4949 | 0.026* | |
C10 | 0.12009 (7) | 0.7464 (2) | 0.40188 (12) | 0.0229 (6) | |
C11 | 0.14588 (8) | 0.7186 (3) | 0.37625 (14) | 0.0295 (6) | |
H11 | 0.1711 | 0.7313 | 0.4008 | 0.035* | |
C12 | 0.13429 (9) | 0.6719 (3) | 0.31405 (15) | 0.0339 (7) | |
H12 | 0.1517 | 0.6544 | 0.2969 | 0.041* | |
C13 | 0.09678 (9) | 0.6513 (3) | 0.27756 (14) | 0.0346 (7) | |
H13 | 0.0889 | 0.6201 | 0.2359 | 0.042* | |
C14 | 0.07127 (8) | 0.6773 (3) | 0.30323 (14) | 0.0336 (7) | |
H14 | 0.0461 | 0.6628 | 0.2788 | 0.040* | |
C15 | 0.08258 (8) | 0.7250 (3) | 0.36512 (13) | 0.0274 (6) | |
H15 | 0.0651 | 0.7426 | 0.3819 | 0.033* | |
C16 | 0.10907 (8) | 0.6442 (2) | 0.51903 (13) | 0.0253 (6) | |
H16A | 0.1338 | 0.6210 | 0.5498 | 0.030* | |
H16B | 0.1031 | 0.5817 | 0.4831 | 0.030* | |
C17 | 0.08146 (7) | 0.6250 (2) | 0.54841 (12) | 0.0232 (6) | |
C18 | 0.07287 (8) | 0.4897 (3) | 0.56064 (13) | 0.0279 (6) | |
H18 | 0.0841 | 0.4140 | 0.5502 | 0.033* | |
C19 | 0.04785 (8) | 0.4669 (3) | 0.58808 (14) | 0.0306 (7) | |
H19 | 0.0423 | 0.3763 | 0.5959 | 0.037* | |
C20 | 0.03112 (7) | 0.5793 (3) | 0.60393 (14) | 0.0275 (6) | |
C21 | 0.03939 (8) | 0.7142 (3) | 0.59224 (13) | 0.0280 (6) | |
H21 | 0.0280 | 0.7895 | 0.6026 | 0.034* | |
C22 | 0.06473 (7) | 0.7369 (3) | 0.56503 (12) | 0.0242 (6) | |
H22 | 0.0705 | 0.8276 | 0.5579 | 0.029* | |
C23 | 0.00440 (9) | 0.5567 (3) | 0.63439 (16) | 0.0389 (7) | |
F1' | 0.24560 (6) | 0.5820 (2) | 0.09554 (12) | 0.0674 (7) | |
F2' | 0.23310 (10) | 0.3851 (3) | 0.05370 (16) | 0.1134 (13) | |
F3' | 0.27574 (8) | 0.4034 (4) | 0.14267 (18) | 0.1280 (15) | |
O' | 0.13628 (5) | 0.20393 (16) | 0.23713 (9) | 0.0240 (4) | |
N1' | 0.08787 (6) | −0.0357 (2) | 0.20786 (10) | 0.0248 (5) | |
N2' | 0.07698 (7) | −0.1235 (2) | 0.11146 (11) | 0.0294 (5) | |
C1' | 0.10222 (8) | −0.0896 (3) | 0.16771 (13) | 0.0277 (6) | |
H1' | 0.1276 | −0.1013 | 0.1790 | 0.033* | |
C2' | 0.04340 (8) | −0.0877 (3) | 0.11429 (13) | 0.0262 (6) | |
C3' | 0.00741 (8) | −0.0977 (3) | 0.06867 (14) | 0.0320 (7) | |
H3' | 0.0027 | −0.1349 | 0.0289 | 0.038* | |
C4' | −0.02128 (8) | −0.0513 (3) | 0.08355 (15) | 0.0371 (7) | |
H4' | −0.0456 | −0.0566 | 0.0532 | 0.045* | |
C5' | −0.01454 (9) | 0.0040 (3) | 0.14381 (16) | 0.0398 (8) | |
H5' | −0.0345 | 0.0345 | 0.1525 | 0.048* | |
C6' | 0.02114 (8) | 0.0140 (3) | 0.19057 (15) | 0.0341 (7) | |
H6' | 0.0257 | 0.0499 | 0.2305 | 0.041* | |
C7' | 0.04969 (7) | −0.0325 (3) | 0.17457 (13) | 0.0254 (6) | |
C8' | 0.10849 (8) | 0.0217 (3) | 0.27057 (13) | 0.0262 (6) | |
H8C | 0.1330 | −0.0202 | 0.2885 | 0.031* | |
H8D | 0.0959 | −0.0018 | 0.2978 | 0.031* | |
C9' | 0.11245 (7) | 0.1798 (3) | 0.26909 (13) | 0.0235 (6) | |
H9' | 0.0881 | 0.2213 | 0.2446 | 0.028* | |
C10' | 0.12750 (7) | 0.2370 (2) | 0.33608 (12) | 0.0228 (6) | |
C11' | 0.10322 (8) | 0.2853 (3) | 0.36199 (14) | 0.0287 (6) | |
H11' | 0.0779 | 0.2887 | 0.3370 | 0.034* | |
C12' | 0.11659 (9) | 0.3284 (3) | 0.42489 (15) | 0.0356 (7) | |
H12' | 0.1002 | 0.3594 | 0.4420 | 0.043* | |
C13' | 0.15418 (9) | 0.3251 (3) | 0.46192 (14) | 0.0357 (7) | |
H13' | 0.1631 | 0.3544 | 0.5039 | 0.043* | |
C14' | 0.17852 (8) | 0.2787 (3) | 0.43688 (13) | 0.0329 (7) | |
H14' | 0.2039 | 0.2774 | 0.4621 | 0.040* | |
C15' | 0.16558 (7) | 0.2334 (3) | 0.37403 (13) | 0.0275 (6) | |
H15' | 0.1822 | 0.2010 | 0.3575 | 0.033* | |
C16' | 0.13615 (7) | 0.3468 (2) | 0.21945 (13) | 0.0225 (6) | |
H16C | 0.1420 | 0.4057 | 0.2565 | 0.027* | |
H16D | 0.1116 | 0.3719 | 0.1886 | 0.027* | |
C17' | 0.16427 (7) | 0.3700 (2) | 0.19148 (12) | 0.0221 (6) | |
C18' | 0.17043 (7) | 0.5057 (3) | 0.17587 (13) | 0.0250 (6) | |
H18' | 0.1571 | 0.5791 | 0.1831 | 0.030* | |
C19' | 0.19571 (8) | 0.5330 (3) | 0.15004 (14) | 0.0292 (6) | |
H19' | 0.1993 | 0.6240 | 0.1397 | 0.035* | |
C20' | 0.21595 (8) | 0.4242 (3) | 0.13926 (14) | 0.0296 (6) | |
C21' | 0.21006 (8) | 0.2884 (3) | 0.15450 (14) | 0.0284 (6) | |
H21' | 0.2235 | 0.2153 | 0.1474 | 0.034* | |
C22' | 0.18436 (7) | 0.2614 (3) | 0.18011 (12) | 0.0242 (6) | |
H22' | 0.1805 | 0.1701 | 0.1898 | 0.029* | |
C23' | 0.24321 (10) | 0.4507 (3) | 0.11059 (19) | 0.0450 (9) |
U11 | U22 | U33 | U12 | U13 | U23 | |
F1 | 0.112 (2) | 0.0504 (13) | 0.161 (3) | −0.0173 (12) | 0.111 (2) | 0.0023 (14) |
F2 | 0.0848 (18) | 0.120 (2) | 0.0586 (16) | −0.0341 (15) | 0.0520 (15) | −0.0158 (14) |
F3 | 0.0403 (13) | 0.159 (3) | 0.092 (2) | 0.0345 (14) | 0.0405 (14) | 0.0613 (18) |
O | 0.0255 (10) | 0.0218 (9) | 0.0217 (10) | −0.0001 (7) | 0.0105 (8) | 0.0015 (7) |
N1 | 0.0235 (12) | 0.0243 (11) | 0.0194 (12) | −0.0039 (8) | 0.0085 (10) | −0.0010 (8) |
N2 | 0.0315 (14) | 0.0300 (12) | 0.0298 (14) | −0.0060 (9) | 0.0141 (12) | −0.0046 (10) |
C1 | 0.0301 (15) | 0.0251 (13) | 0.0290 (16) | −0.0034 (10) | 0.0159 (13) | −0.0008 (11) |
C2 | 0.0263 (14) | 0.0235 (12) | 0.0236 (15) | −0.0056 (10) | 0.0081 (12) | 0.0014 (10) |
C3 | 0.0360 (17) | 0.0343 (15) | 0.0219 (16) | −0.0090 (12) | 0.0050 (13) | −0.0018 (11) |
C4 | 0.0251 (16) | 0.0440 (17) | 0.0346 (19) | −0.0054 (12) | −0.0007 (14) | 0.0040 (14) |
C5 | 0.0222 (15) | 0.0409 (16) | 0.0425 (19) | −0.0034 (12) | 0.0143 (14) | 0.0031 (13) |
C6 | 0.0256 (15) | 0.0330 (14) | 0.0253 (16) | −0.0038 (11) | 0.0105 (13) | −0.0004 (11) |
C7 | 0.0232 (14) | 0.0228 (12) | 0.0228 (15) | −0.0042 (10) | 0.0077 (12) | 0.0013 (10) |
C8 | 0.0232 (14) | 0.0281 (13) | 0.0191 (14) | −0.0044 (10) | 0.0068 (12) | −0.0005 (10) |
C9 | 0.0207 (13) | 0.0262 (13) | 0.0195 (14) | 0.0005 (10) | 0.0092 (11) | 0.0022 (10) |
C10 | 0.0276 (15) | 0.0196 (12) | 0.0226 (14) | 0.0007 (10) | 0.0112 (12) | 0.0009 (10) |
C11 | 0.0307 (16) | 0.0262 (14) | 0.0339 (17) | 0.0028 (11) | 0.0155 (13) | −0.0027 (11) |
C12 | 0.0438 (19) | 0.0306 (14) | 0.0354 (18) | 0.0029 (12) | 0.0243 (16) | −0.0049 (12) |
C13 | 0.053 (2) | 0.0256 (14) | 0.0233 (16) | 0.0008 (12) | 0.0134 (15) | −0.0025 (11) |
C14 | 0.0322 (16) | 0.0341 (15) | 0.0261 (16) | −0.0039 (12) | 0.0030 (13) | −0.0043 (12) |
C15 | 0.0288 (15) | 0.0285 (14) | 0.0260 (16) | 0.0007 (11) | 0.0123 (13) | 0.0004 (11) |
C16 | 0.0338 (16) | 0.0188 (12) | 0.0247 (15) | 0.0033 (10) | 0.0133 (13) | 0.0029 (10) |
C17 | 0.0240 (14) | 0.0262 (13) | 0.0171 (14) | −0.0011 (10) | 0.0059 (11) | 0.0007 (10) |
C18 | 0.0361 (16) | 0.0213 (13) | 0.0260 (16) | −0.0001 (10) | 0.0122 (13) | 0.0012 (10) |
C19 | 0.0370 (17) | 0.0234 (14) | 0.0321 (17) | −0.0046 (11) | 0.0148 (14) | 0.0032 (11) |
C20 | 0.0233 (14) | 0.0316 (14) | 0.0277 (16) | −0.0030 (11) | 0.0103 (12) | 0.0038 (11) |
C21 | 0.0296 (15) | 0.0290 (14) | 0.0247 (15) | 0.0056 (11) | 0.0103 (13) | 0.0035 (11) |
C22 | 0.0260 (14) | 0.0215 (12) | 0.0229 (14) | 0.0002 (10) | 0.0075 (12) | 0.0039 (10) |
C23 | 0.0347 (18) | 0.0411 (17) | 0.043 (2) | −0.0033 (13) | 0.0174 (16) | 0.0042 (14) |
F1' | 0.0789 (16) | 0.0480 (12) | 0.106 (2) | −0.0099 (10) | 0.0695 (16) | 0.0101 (11) |
F2' | 0.175 (3) | 0.106 (2) | 0.126 (3) | −0.068 (2) | 0.129 (3) | −0.0539 (19) |
F3' | 0.0609 (17) | 0.180 (3) | 0.179 (4) | 0.0508 (19) | 0.085 (2) | 0.112 (3) |
O' | 0.0301 (10) | 0.0218 (9) | 0.0262 (11) | −0.0025 (7) | 0.0176 (9) | 0.0004 (7) |
N1' | 0.0301 (13) | 0.0244 (11) | 0.0215 (12) | −0.0065 (9) | 0.0120 (11) | −0.0004 (9) |
N2' | 0.0337 (14) | 0.0275 (12) | 0.0287 (14) | −0.0057 (9) | 0.0143 (11) | −0.0046 (9) |
C1' | 0.0311 (15) | 0.0252 (13) | 0.0289 (17) | −0.0043 (11) | 0.0141 (13) | −0.0021 (11) |
C2' | 0.0336 (16) | 0.0232 (13) | 0.0255 (15) | −0.0082 (10) | 0.0157 (13) | −0.0027 (10) |
C3' | 0.0385 (17) | 0.0327 (15) | 0.0260 (16) | −0.0113 (12) | 0.0142 (14) | −0.0062 (12) |
C4' | 0.0242 (16) | 0.0508 (18) | 0.0309 (17) | −0.0106 (12) | 0.0053 (13) | −0.0043 (14) |
C5' | 0.0297 (17) | 0.0586 (19) | 0.0368 (19) | −0.0087 (14) | 0.0192 (15) | −0.0102 (15) |
C6' | 0.0327 (17) | 0.0461 (17) | 0.0269 (17) | −0.0099 (13) | 0.0155 (14) | −0.0074 (13) |
C7' | 0.0281 (15) | 0.0252 (13) | 0.0249 (15) | −0.0098 (10) | 0.0128 (12) | −0.0016 (11) |
C8' | 0.0284 (15) | 0.0284 (14) | 0.0203 (15) | −0.0072 (10) | 0.0082 (12) | 0.0001 (11) |
C9' | 0.0230 (14) | 0.0283 (13) | 0.0218 (14) | −0.0015 (10) | 0.0115 (12) | 0.0008 (10) |
C10' | 0.0267 (14) | 0.0199 (12) | 0.0224 (14) | −0.0020 (10) | 0.0106 (12) | 0.0002 (10) |
C11' | 0.0281 (15) | 0.0270 (14) | 0.0299 (16) | 0.0002 (10) | 0.0104 (13) | −0.0022 (11) |
C12' | 0.048 (2) | 0.0298 (14) | 0.0359 (18) | −0.0022 (12) | 0.0246 (16) | −0.0089 (12) |
C13' | 0.051 (2) | 0.0289 (14) | 0.0263 (17) | −0.0093 (13) | 0.0145 (15) | −0.0029 (12) |
C14' | 0.0312 (16) | 0.0358 (15) | 0.0237 (16) | −0.0106 (12) | 0.0025 (13) | 0.0032 (12) |
C15' | 0.0247 (15) | 0.0308 (14) | 0.0278 (16) | −0.0036 (11) | 0.0112 (12) | 0.0024 (11) |
C16' | 0.0242 (14) | 0.0210 (12) | 0.0231 (14) | −0.0011 (10) | 0.0104 (12) | 0.0004 (10) |
C17' | 0.0222 (14) | 0.0258 (13) | 0.0148 (13) | −0.0036 (10) | 0.0036 (11) | −0.0022 (10) |
C18' | 0.0289 (15) | 0.0218 (13) | 0.0225 (15) | −0.0002 (10) | 0.0085 (12) | −0.0034 (10) |
C19' | 0.0341 (16) | 0.0252 (13) | 0.0284 (16) | −0.0070 (11) | 0.0127 (13) | 0.0019 (11) |
C20' | 0.0324 (16) | 0.0303 (14) | 0.0302 (17) | −0.0083 (11) | 0.0168 (13) | −0.0022 (11) |
C21' | 0.0302 (15) | 0.0260 (14) | 0.0328 (17) | −0.0030 (11) | 0.0165 (13) | −0.0043 (11) |
C22' | 0.0275 (14) | 0.0212 (12) | 0.0241 (14) | −0.0031 (10) | 0.0106 (12) | −0.0014 (10) |
C23' | 0.047 (2) | 0.0380 (18) | 0.063 (2) | −0.0060 (14) | 0.0353 (19) | 0.0021 (15) |
F1—C23 | 1.319 (3) | F1'—C23' | 1.318 (3) |
F2—C23 | 1.334 (4) | F2'—C23' | 1.360 (4) |
F3—C23 | 1.312 (4) | F3'—C23' | 1.276 (4) |
O—C9 | 1.424 (3) | O'—C9' | 1.423 (3) |
O—C16 | 1.424 (3) | O'—C16' | 1.427 (3) |
N1—C1 | 1.362 (3) | N1'—C1' | 1.363 (3) |
N1—C7 | 1.386 (3) | N1'—C7' | 1.384 (3) |
N1—C8 | 1.449 (3) | N1'—C8' | 1.450 (3) |
N2—C1 | 1.312 (4) | N2'—C1' | 1.317 (4) |
N2—C2 | 1.398 (4) | N2'—C2' | 1.390 (4) |
C1—H1 | 0.9300 | C1'—H1' | 0.9300 |
C2—C3 | 1.389 (4) | C2'—C3' | 1.386 (4) |
C3—C4 | 1.384 (4) | C2'—C7' | 1.411 (4) |
C3—H3 | 0.9300 | C3'—C4' | 1.377 (4) |
C4—C5 | 1.405 (4) | C3'—H3' | 0.9300 |
C4—H4 | 0.9300 | C4'—C5' | 1.407 (4) |
C5—H5 | 0.9300 | C4'—H4' | 0.9300 |
C6—C5 | 1.383 (4) | C5'—H5' | 0.9300 |
C6—H6 | 0.9300 | C6'—C5' | 1.386 (4) |
C7—C2 | 1.407 (4) | C6'—H6' | 0.9300 |
C7—C6 | 1.390 (4) | C7'—C6' | 1.387 (4) |
C8—H8A | 0.9700 | C8'—H8C | 0.9700 |
C8—H8B | 0.9700 | C8'—H8D | 0.9700 |
C9—C8 | 1.524 (3) | C9'—C8' | 1.525 (3) |
C9—C10 | 1.525 (4) | C9'—C10' | 1.515 (4) |
C9—H9 | 0.9800 | C9'—H9' | 0.9800 |
C10—C11 | 1.388 (4) | C10'—C11' | 1.392 (4) |
C10—C15 | 1.389 (4) | C10'—C15' | 1.398 (4) |
C11—C12 | 1.390 (4) | C11'—C12' | 1.390 (4) |
C11—H11 | 0.9300 | C11'—H11' | 0.9300 |
C12—C13 | 1.387 (4) | C12'—C13' | 1.378 (4) |
C12—H12 | 0.9300 | C12'—H12' | 0.9300 |
C13—H13 | 0.9300 | C13'—H13' | 0.9300 |
C14—C13 | 1.375 (4) | C14'—C13' | 1.374 (4) |
C14—H14 | 0.9300 | C14'—H14' | 0.9300 |
C15—C14 | 1.388 (4) | C15'—C14' | 1.396 (4) |
C15—H15 | 0.9300 | C15'—H15' | 0.9300 |
C16—H16A | 0.9700 | C16'—H16C | 0.9700 |
C16—H16B | 0.9700 | C16'—H16D | 0.9700 |
C17—C16 | 1.502 (4) | C17'—C16' | 1.502 (4) |
C17—C18 | 1.397 (3) | C17'—C22' | 1.394 (4) |
C17—C22 | 1.390 (4) | C18'—C17' | 1.396 (3) |
C18—C19 | 1.383 (4) | C18'—C19' | 1.372 (4) |
C18—H18 | 0.9300 | C18'—H18' | 0.9300 |
C19—H19 | 0.9300 | C19'—C20' | 1.393 (4) |
C20—C19 | 1.385 (4) | C19'—H19' | 0.9300 |
C20—C21 | 1.385 (4) | C20'—C23' | 1.488 (4) |
C20—C23 | 1.494 (4) | C21'—C20' | 1.391 (4) |
C21—H21 | 0.9300 | C21'—H21' | 0.9300 |
C22—C21 | 1.390 (4) | C22'—C21' | 1.383 (4) |
C22—H22 | 0.9300 | C22'—H22' | 0.9300 |
C16—O—C9 | 112.37 (18) | C9'—O'—C16' | 112.04 (18) |
C1—N1—C7 | 106.3 (2) | C1'—N1'—C7' | 106.5 (2) |
C1—N1—C8 | 128.2 (2) | C1'—N1'—C8' | 126.9 (2) |
C7—N1—C8 | 125.4 (2) | C7'—N1'—C8' | 126.2 (2) |
C1—N2—C2 | 104.0 (2) | C1'—N2'—C2' | 104.3 (2) |
N2—C1—N1 | 114.4 (2) | N2'—C1'—N1' | 114.0 (2) |
N2—C1—H1 | 122.8 | N2'—C1'—H1' | 123.0 |
N1—C1—H1 | 122.8 | N1'—C1'—H1' | 123.0 |
C3—C2—N2 | 130.1 (3) | C3'—C2'—N2' | 130.3 (3) |
C3—C2—C7 | 119.9 (3) | C3'—C2'—C7' | 119.6 (3) |
N2—C2—C7 | 110.1 (2) | N2'—C2'—C7' | 110.1 (2) |
C4—C3—C2 | 117.7 (3) | C4'—C3'—C2' | 118.6 (3) |
C4—C3—H3 | 121.2 | C4'—C3'—H3' | 120.7 |
C2—C3—H3 | 121.2 | C2'—C3'—H3' | 120.7 |
C3—C4—C5 | 121.9 (3) | C3'—C4'—C5' | 121.2 (3) |
C3—C4—H4 | 119.1 | C3'—C4'—H4' | 119.4 |
C5—C4—H4 | 119.1 | C5'—C4'—H4' | 119.4 |
C6—C5—C4 | 121.2 (3) | C6'—C5'—C4' | 121.5 (3) |
C6—C5—H5 | 119.4 | C6'—C5'—H5' | 119.2 |
C4—C5—H5 | 119.4 | C4'—C5'—H5' | 119.2 |
C5—C6—C7 | 116.5 (3) | C5'—C6'—C7' | 116.5 (3) |
C5—C6—H6 | 121.8 | C5'—C6'—H6' | 121.8 |
C7—C6—H6 | 121.8 | C7'—C6'—H6' | 121.8 |
N1—C7—C6 | 132.0 (2) | N1'—C7'—C6' | 132.3 (3) |
N1—C7—C2 | 105.2 (2) | N1'—C7'—C2' | 105.0 (2) |
C6—C7—C2 | 122.9 (2) | C6'—C7'—C2' | 122.7 (3) |
N1—C8—C9 | 111.8 (2) | N1'—C8'—C9' | 112.1 (2) |
N1—C8—H8A | 109.2 | N1'—C8'—H8C | 109.2 |
C9—C8—H8A | 109.2 | C9'—C8'—H8C | 109.2 |
N1—C8—H8B | 109.2 | N1'—C8'—H8D | 109.2 |
C9—C8—H8B | 109.2 | C9'—C8'—H8D | 109.2 |
H8A—C8—H8B | 107.9 | H8C—C8'—H8D | 107.9 |
O—C9—C8 | 105.90 (19) | O'—C9'—C10' | 113.5 (2) |
O—C9—C10 | 113.8 (2) | O'—C9'—C8' | 105.5 (2) |
C8—C9—C10 | 110.1 (2) | C10'—C9'—C8' | 109.8 (2) |
O—C9—H9 | 109.0 | O'—C9'—H9' | 109.3 |
C8—C9—H9 | 109.0 | C10'—C9'—H9' | 109.3 |
C10—C9—H9 | 109.0 | C8'—C9'—H9' | 109.3 |
C11—C10—C15 | 119.4 (3) | C11'—C10'—C15' | 119.1 (2) |
C11—C10—C9 | 119.0 (2) | C11'—C10'—C9' | 120.1 (2) |
C15—C10—C9 | 121.5 (2) | C15'—C10'—C9' | 120.6 (2) |
C10—C11—C12 | 120.4 (3) | C12'—C11'—C10' | 120.5 (3) |
C10—C11—H11 | 119.8 | C12'—C11'—H11' | 119.8 |
C12—C11—H11 | 119.8 | C10'—C11'—H11' | 119.8 |
C13—C12—C11 | 119.9 (3) | C13'—C12'—C11' | 120.0 (3) |
C13—C12—H12 | 120.0 | C13'—C12'—H12' | 120.0 |
C11—C12—H12 | 120.0 | C11'—C12'—H12' | 120.0 |
C14—C13—C12 | 119.7 (3) | C14'—C13'—C12' | 120.1 (3) |
C14—C13—H13 | 120.2 | C14'—C13'—H13' | 119.9 |
C12—C13—H13 | 120.2 | C12'—C13'—H13' | 119.9 |
C13—C14—C15 | 120.8 (3) | C13'—C14'—C15' | 120.7 (3) |
C13—C14—H14 | 119.6 | C13'—C14'—H14' | 119.7 |
C15—C14—H14 | 119.6 | C15'—C14'—H14' | 119.7 |
C14—C15—C10 | 119.9 (3) | C14'—C15'—C10' | 119.5 (3) |
C14—C15—H15 | 120.1 | C14'—C15'—H15' | 120.2 |
C10—C15—H15 | 120.1 | C10'—C15'—H15' | 120.2 |
O—C16—C17 | 110.26 (19) | O'—C16'—C17' | 110.20 (19) |
O—C16—H16A | 109.6 | O'—C16'—H16C | 109.6 |
C17—C16—H16A | 109.6 | C17'—C16'—H16C | 109.6 |
O—C16—H16B | 109.6 | O'—C16'—H16D | 109.6 |
C17—C16—H16B | 109.6 | C17'—C16'—H16D | 109.6 |
H16A—C16—H16B | 108.1 | H16C—C16'—H16D | 108.1 |
C22—C17—C18 | 118.8 (2) | C22'—C17'—C18' | 118.5 (2) |
C22—C17—C16 | 122.5 (2) | C22'—C17'—C16' | 122.6 (2) |
C18—C17—C16 | 118.7 (2) | C18'—C17'—C16' | 118.8 (2) |
C19—C18—C17 | 120.8 (2) | C19'—C18'—C17' | 121.3 (2) |
C19—C18—H18 | 119.6 | C19'—C18'—H18' | 119.4 |
C17—C18—H18 | 119.6 | C17'—C18'—H18' | 119.4 |
C18—C19—C20 | 119.8 (2) | C18'—C19'—C20' | 120.0 (2) |
C18—C19—H19 | 120.1 | C18'—C19'—H19' | 120.0 |
C20—C19—H19 | 120.1 | C20'—C19'—H19' | 120.0 |
C19—C20—C21 | 120.1 (2) | C21'—C20'—C19' | 119.4 (2) |
C19—C20—C23 | 120.5 (2) | C21'—C20'—C23' | 119.6 (3) |
C21—C20—C23 | 119.3 (2) | C19'—C20'—C23' | 121.0 (2) |
C20—C21—C22 | 120.0 (2) | C22'—C21'—C20' | 120.4 (2) |
C20—C21—H21 | 120.0 | C22'—C21'—H21' | 119.8 |
C22—C21—H21 | 120.0 | C20'—C21'—H21' | 119.8 |
C17—C22—C21 | 120.5 (2) | C21'—C22'—C17' | 120.4 (2) |
C17—C22—H22 | 119.8 | C21'—C22'—H22' | 119.8 |
C21—C22—H22 | 119.8 | C17'—C22'—H22' | 119.8 |
F3—C23—F1 | 108.6 (3) | F3'—C23'—F1' | 109.3 (3) |
F3—C23—F2 | 104.5 (3) | F3'—C23'—F2' | 103.3 (3) |
F1—C23—F2 | 103.3 (3) | F1'—C23'—F2' | 102.2 (3) |
F3—C23—C20 | 113.2 (3) | F3'—C23'—C20' | 114.5 (3) |
F1—C23—C20 | 114.1 (3) | F1'—C23'—C20' | 114.8 (3) |
F2—C23—C20 | 112.3 (3) | F2'—C23'—C20' | 111.3 (3) |
C16—O—C9—C8 | −164.6 (2) | C16'—O'—C9'—C10' | −72.8 (3) |
C16—O—C9—C10 | 74.4 (3) | C16'—O'—C9'—C8' | 167.0 (2) |
C9—O—C16—C17 | −178.3 (2) | C9'—O'—C16'—C17' | 174.7 (2) |
C7—N1—C1—N2 | 0.3 (3) | C7'—N1'—C1'—N2' | −0.7 (3) |
C8—N1—C1—N2 | 175.7 (2) | C8'—N1'—C1'—N2' | −174.4 (2) |
C1—N1—C7—C6 | −179.8 (3) | C1'—N1'—C7'—C6' | −178.4 (3) |
C8—N1—C7—C6 | 4.7 (4) | C8'—N1'—C7'—C6' | −4.7 (4) |
C1—N1—C7—C2 | 0.0 (3) | C1'—N1'—C7'—C2' | 0.3 (3) |
C8—N1—C7—C2 | −175.6 (2) | C8'—N1'—C7'—C2' | 174.1 (2) |
C1—N1—C8—C9 | −95.0 (3) | C1'—N1'—C8'—C9' | 94.8 (3) |
C7—N1—C8—C9 | 79.6 (3) | C7'—N1'—C8'—C9' | −77.7 (3) |
C2—N2—C1—N1 | −0.5 (3) | C2'—N2'—C1'—N1' | 0.8 (3) |
C1—N2—C2—C3 | −178.9 (3) | C1'—N2'—C2'—C3' | 178.9 (3) |
C1—N2—C2—C7 | 0.5 (3) | C1'—N2'—C2'—C7' | −0.6 (3) |
N2—C2—C3—C4 | −179.8 (3) | N2'—C2'—C3'—C4' | −178.6 (3) |
C7—C2—C3—C4 | 0.8 (4) | C7'—C2'—C3'—C4' | 0.8 (4) |
C2—C3—C4—C5 | 0.0 (4) | C3'—C2'—C7'—N1' | −179.4 (2) |
C3—C4—C5—C6 | −0.7 (4) | N2'—C2'—C7'—N1' | 0.1 (3) |
C7—C6—C5—C4 | 0.5 (4) | C3'—C2'—C7'—C6' | −0.5 (4) |
N1—C7—C2—C3 | 179.1 (2) | N2'—C2'—C7'—C6' | 179.0 (2) |
C6—C7—C2—C3 | −1.0 (4) | C2'—C3'—C4'—C5' | −0.6 (4) |
N1—C7—C2—N2 | −0.3 (3) | C3'—C4'—C5'—C6' | 0.0 (5) |
C6—C7—C2—N2 | 179.5 (2) | C7'—C6'—C5'—C4' | 0.4 (4) |
N1—C7—C6—C5 | −179.9 (2) | N1'—C7'—C6'—C5' | 178.4 (3) |
C2—C7—C6—C5 | 0.4 (4) | C2'—C7'—C6'—C5' | −0.1 (4) |
O—C9—C8—N1 | 70.0 (3) | O'—C9'—C8'—N1' | −68.2 (3) |
C10—C9—C8—N1 | −166.6 (2) | C10'—C9'—C8'—N1' | 169.3 (2) |
O—C9—C10—C11 | −158.4 (2) | O'—C9'—C10'—C11' | 148.2 (2) |
O—C9—C10—C15 | 24.8 (3) | C8'—C9'—C10'—C11' | −94.0 (3) |
C8—C9—C10—C11 | 82.9 (3) | O'—C9'—C10'—C15' | −36.1 (3) |
C8—C9—C10—C15 | −93.8 (3) | C8'—C9'—C10'—C15' | 81.6 (3) |
C9—C10—C11—C12 | −175.8 (2) | C15'—C10'—C11'—C12' | −0.5 (4) |
C15—C10—C11—C12 | 1.0 (4) | C9'—C10'—C11'—C12' | 175.3 (2) |
C9—C10—C15—C14 | 176.2 (2) | C11'—C10'—C15'—C14' | −0.3 (4) |
C11—C10—C15—C14 | −0.5 (4) | C9'—C10'—C15'—C14' | −176.0 (2) |
C10—C11—C12—C13 | −0.8 (4) | C10'—C11'—C12'—C13' | 0.8 (4) |
C11—C12—C13—C14 | 0.0 (4) | C11'—C12'—C13'—C14' | −0.3 (4) |
C15—C14—C13—C12 | 0.5 (4) | C15'—C14'—C13'—C12' | −0.5 (4) |
C10—C15—C14—C13 | −0.3 (4) | C10'—C15'—C14'—C13' | 0.8 (4) |
C22—C17—C16—O | −13.1 (4) | C22'—C17'—C16'—O' | 5.4 (3) |
C18—C17—C16—O | 168.3 (2) | C18'—C17'—C16'—O' | −175.0 (2) |
C22—C17—C18—C19 | 0.8 (4) | C18'—C17'—C22'—C21' | 0.6 (4) |
C16—C17—C18—C19 | 179.5 (2) | C16'—C17'—C22'—C21' | −179.7 (2) |
C18—C17—C22—C21 | −1.2 (4) | C19'—C18'—C17'—C22' | −0.2 (4) |
C16—C17—C22—C21 | −179.9 (2) | C19'—C18'—C17'—C16' | −179.8 (2) |
C17—C18—C19—C20 | −0.2 (4) | C17'—C18'—C19'—C20' | −0.4 (4) |
C21—C20—C19—C18 | 0.1 (4) | C18'—C19'—C20'—C21' | 0.4 (4) |
C23—C20—C19—C18 | −179.2 (3) | C18'—C19'—C20'—C23' | 179.3 (3) |
C19—C20—C21—C22 | −0.5 (4) | C21'—C20'—C23'—F3' | −55.0 (5) |
C23—C20—C21—C22 | 178.8 (3) | C19'—C20'—C23'—F3' | 126.2 (4) |
C19—C20—C23—F1 | −0.6 (4) | C21'—C20'—C23'—F1' | 177.3 (3) |
C21—C20—C23—F1 | −179.9 (3) | C19'—C20'—C23'—F1' | −1.5 (5) |
C19—C20—C23—F2 | 116.5 (3) | C21'—C20'—C23'—F2' | 61.8 (4) |
C21—C20—C23—F2 | −62.8 (4) | C19'—C20'—C23'—F2' | −117.0 (3) |
C19—C20—C23—F3 | −125.4 (3) | C22'—C21'—C20'—C19' | 0.0 (4) |
C21—C20—C23—F3 | 55.3 (4) | C22'—C21'—C20'—C23' | −178.8 (3) |
C17—C22—C21—C20 | 1.1 (4) | C17'—C22'—C21'—C20' | −0.6 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
C1—H1···N2′i | 0.93 | 2.45 | 3.210 (5) | 139 |
C1′—H1′···N2ii | 0.93 | 2.47 | 3.215 (5) | 138 |
Symmetry codes: (i) x, −y+1, z+1/2; (ii) x, −y+1, z−1/2. |
Experimental details
Crystal data | |
Chemical formula | C23H19F3N2O |
Mr | 396.40 |
Crystal system, space group | Monoclinic, C2/c |
Temperature (K) | 120 |
a, b, c (Å) | 39.3006 (15), 9.5834 (2), 23.0120 (9) |
β (°) | 113.668 (1) |
V (Å3) | 7938.1 (5) |
Z | 16 |
Radiation type | Mo Kα |
µ (mm−1) | 0.10 |
Crystal size (mm) | 0.35 × 0.2 × 0.14 |
Data collection | |
Diffractometer | Bruker Nonius KappaCCD diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 2007) |
Tmin, Tmax | 0.974, 0.984 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 28014, 8735, 5066 |
Rint | 0.072 |
(sin θ/λ)max (Å−1) | 0.650 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.081, 0.227, 1.06 |
No. of reflections | 8735 |
No. of parameters | 524 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.62, −0.59 |
Computer programs: , DENZO (Otwinowski & Minor, 1997) and COLLECT (Nonius, 1998), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 1997), WinGX (Farrugia, 1999).
D—H···A | D—H | H···A | D···A | D—H···A |
C1—H1···N2'i | 0.93 | 2.45 | 3.210 (5) | 139.0 |
C1'—H1'···N2ii | 0.93 | 2.47 | 3.215 (5) | 137.6 |
Symmetry codes: (i) x, −y+1, z+1/2; (ii) x, −y+1, z−1/2. |
Acknowledgements
The authors acknowledge Zonguldak Karaelmas University Research Fund (grant No. 2004-13-02-16).
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
In recent years, there has been increasing interest in synthesis of heterocyclic compounds having biological and commercial importances. Clotrimazole (Song & Shin, 1998), econazole (Freer et al., 1986), ketoconazole (Peeters et al., 1979a) and miconazole (Peeters et al., 1979b) are well known imidazole ring containing, while itraconazole (Peeters et al., 1996) and fluconazole (Caira et al., 2004) are 1H-1,2,4-triazole ring containing, azole derivatives. They have been developed for clinical uses as antifungal agents (Brammer & Feczko, 1988). Lately, similar structures to miconazole and econazole have been reported to show antibacterial activity more than antifungal activity (Özel Güven et al., 2007a,b). In these structures, benzimidazole ring has been found in place of the imidazole ring of miconazole and econazole. Recently, we reported the crystal structures of furyl (Özel Güven et al., 2008a) and phenyl (Özel Güven et al., 2008b) substituted compounds, and we report herein the crystal structure of title benzimidazole derivative.
The asymmetric unit of the crystal structure of the title compound (Fig. 1) contains two independent molecules, in which the bond lengths and angles are generally within normal ranges. The planar benzimidazole ring systems are oriented with respect to the phenyl and trifluoromethylbenzene rings at dihedral angles of 9.62 (6)°, 78.63 (7)° and 2.53 (8)°, 83.83 (9)° for unprimed and primed molecules, respectively. Atoms C8, C9, C16 and C8', C9', C16' are -0.102 (2), 0.093 (2), -0.008 (3) and 0.122 (3), -0.100 (3), -0.003 (3) Å away from the ring planes of the corresponding benzimidazole, phenyl and trifluoromethylbenzene, respectively. So, they are nearly coplanar with the attached rings. The trifluoromethylbenzene rings are oriented with respect to the phenyl rings at dihedral angles of 75.97 (9)° and 86.13 (9)° for unprimed and primed molecules, respectively.
In the crystal structure, intermolecular C—H···N hydrogen bonds (Table 1) link the molecules to form a R22(6) ring motif (Bernstein et al., 1995), in which they may be effective in the stabilization of the structure. The molecules are elongated along [001], and stacked along the b axis (Fig. 2).