organic compounds
(2S,3S)-3-(4-Chlorophenyl)-8-methyltropane-2-carboxylic acid
aThe Key Laboratory of Nuclear Medicine, Ministry of Health, Jiangsu Institute of Nuclear Medicine, Wuxi 214063, People's Republic of China
*Correspondence e-mail: jglin@yahoo.cn
In the title compound, C15H18ClNO2, the internal torsion angles of the tropane ring are comparable to those of tropane rings in the crystal structures reported for cocaine and its derivatives. There is an intramolecular hydrogen bond between the N atom in the tropane ring and the O atom of the carboxyl group. The is further stabilized by many weak C—H⋯O interactions between the molecules in the ab plane, forming a two-dimensional supramolecular network.
Related literature
For general background, see: Clarke et al. (1973); Carroll et al. (1991, 2005). For related structures, see: Meltzer et al. (1997, 2001); Zhu et al. (1999). For related literature, see: Meegalla et al. (1997). For a description of the Cambridge Structural Database, see: Allen (2002).
Experimental
Crystal data
|
Data collection: SMART (Bruker, 2001); cell SAINT (Bruker, 2001); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536808025002/fj2136sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536808025002/fj2136Isup2.hkl
Compound (I) was synthesized according to the method reported in the literature (Meegalla et al.,1997). A white powder was obtained (yield 41%) and was recrystallized from a mixed solvent composed of acetone, methanol and ether (1:1:1 v/v/v); white block-shaped crystals were obtained after several days (yield 36%). Analysis calculated for C15H18ClNO2: C 64.40, H 6.95, N 5.01%; found: C 64.17, H 6.98, N 4.90%.
H atoms bonded to N atom was located in a difference map and refined with distance restraints of N—H = 0.881 (17) Å, and with Uiso(H) = 1.2Ueq(N). Other H atoms were positioned geometrically and refined using a riding model (including
about the ethanol C—C bond), with C—H = 0.93–0.98 Å and with Uiso(H) = 1.2 (1.5 for methyl groups) times Ueq(C).Data collection: SMART (Bruker, 2001); cell
SAINT (Bruker, 2001); data reduction: SAINT (Bruker, 2001); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).C15H18ClNO2 | F(000) = 296 |
Mr = 279.75 | Dx = 1.390 Mg m−3 |
Monoclinic, P21 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2yb | Cell parameters from 742 reflections |
a = 8.219 (6) Å | θ = 3.3–26.8° |
b = 6.501 (4) Å | µ = 0.28 mm−1 |
c = 12.731 (8) Å | T = 293 K |
β = 100.692 (10)° | Block, white |
V = 668.4 (8) Å3 | 0.20 × 0.10 × 0.10 mm |
Z = 2 |
Bruker SMART APEX CCD diffractometer | 2760 independent reflections |
Radiation source: fine-focus sealed tube | 2264 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.042 |
ϕ and ω scans | θmax = 27.2°, θmin = 1.6° |
Absorption correction: multi-scan (SADABS; Bruker, 2001) | h = −8→10 |
Tmin = 0.956, Tmax = 0.976 | k = −8→8 |
3374 measured reflections | l = −16→13 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.052 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.125 | w = 1/[σ2(Fo2) + (0.0695P)2] where P = (Fo2 + 2Fc2)/3 |
S = 0.99 | (Δ/σ)max < 0.001 |
2760 reflections | Δρmax = 0.25 e Å−3 |
177 parameters | Δρmin = −0.21 e Å−3 |
2 restraints | Absolute structure: Flack (1983), 1135 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: −0.15 (9) |
C15H18ClNO2 | V = 668.4 (8) Å3 |
Mr = 279.75 | Z = 2 |
Monoclinic, P21 | Mo Kα radiation |
a = 8.219 (6) Å | µ = 0.28 mm−1 |
b = 6.501 (4) Å | T = 293 K |
c = 12.731 (8) Å | 0.20 × 0.10 × 0.10 mm |
β = 100.692 (10)° |
Bruker SMART APEX CCD diffractometer | 2760 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2001) | 2264 reflections with I > 2σ(I) |
Tmin = 0.956, Tmax = 0.976 | Rint = 0.042 |
3374 measured reflections |
R[F2 > 2σ(F2)] = 0.052 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.125 | Δρmax = 0.25 e Å−3 |
S = 0.99 | Δρmin = −0.21 e Å−3 |
2760 reflections | Absolute structure: Flack (1983), 1135 Friedel pairs |
177 parameters | Absolute structure parameter: −0.15 (9) |
2 restraints |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cl1 | 0.58072 (10) | 0.59422 (16) | 0.46455 (6) | 0.0650 (3) | |
O1 | 0.9356 (2) | 1.0348 (4) | 0.03436 (15) | 0.0508 (6) | |
O2 | 0.7924 (2) | 1.2275 (4) | 0.12844 (18) | 0.0614 (6) | |
C1 | 0.9057 (3) | 0.6847 (5) | 0.2742 (2) | 0.0414 (7) | |
H2 | 0.9376 | 0.6170 | 0.2169 | 0.050* | |
C2 | 0.7841 (3) | 0.6008 (5) | 0.3216 (2) | 0.0439 (7) | |
H3 | 0.7354 | 0.4763 | 0.2972 | 0.053* | |
C3 | 0.7350 (3) | 0.7004 (5) | 0.4043 (2) | 0.0433 (7) | |
C4 | 0.8053 (4) | 0.8847 (5) | 0.4423 (2) | 0.0464 (7) | |
H4 | 0.7703 | 0.9523 | 0.4985 | 0.056* | |
C5 | 0.9290 (3) | 0.9666 (5) | 0.3950 (2) | 0.0432 (7) | |
H5 | 0.9779 | 1.0902 | 0.4206 | 0.052* | |
C6 | 0.9824 (3) | 0.8694 (4) | 0.3104 (2) | 0.0335 (6) | |
C7 | 1.1233 (3) | 0.9616 (4) | 0.2641 (2) | 0.0350 (6) | |
H7 | 1.2084 | 0.9996 | 0.3256 | 0.042* | |
C8 | 1.0761 (3) | 1.1622 (4) | 0.2018 (2) | 0.0333 (6) | |
H8 | 1.0536 | 1.2665 | 0.2528 | 0.040* | |
C9 | 1.2231 (3) | 1.2388 (5) | 0.1525 (2) | 0.0361 (6) | |
H9 | 1.1976 | 1.3707 | 0.1159 | 0.043* | |
N10 | 1.2558 (3) | 1.0745 (4) | 0.07558 (17) | 0.0362 (5) | |
H10X | 1.157 (2) | 1.032 (5) | 0.045 (2) | 0.039 (8)* | |
C11 | 1.3402 (4) | 0.9115 (5) | 0.1503 (2) | 0.0463 (8) | |
H11 | 1.3969 | 0.8117 | 0.1121 | 0.056* | |
C12 | 1.2061 (4) | 0.8080 (4) | 0.1992 (2) | 0.0413 (7) | |
H12A | 1.2545 | 0.6967 | 0.2454 | 0.050* | |
H12B | 1.1233 | 0.7497 | 0.1428 | 0.050* | |
C13 | 1.3871 (3) | 1.2488 (5) | 0.2315 (3) | 0.0478 (8) | |
H13A | 1.3688 | 1.2814 | 0.3027 | 0.057* | |
H13B | 1.4592 | 1.3524 | 0.2099 | 0.057* | |
C14 | 1.4630 (3) | 1.0344 (6) | 0.2289 (2) | 0.0532 (8) | |
H14A | 1.5688 | 1.0420 | 0.2057 | 0.064* | |
H14B | 1.4797 | 0.9717 | 0.2992 | 0.064* | |
C15 | 0.9197 (3) | 1.1414 (4) | 0.1143 (2) | 0.0377 (6) | |
C16 | 1.3556 (4) | 1.1475 (5) | −0.0028 (2) | 0.0484 (8) | |
H16A | 1.3583 | 1.0429 | −0.0557 | 0.073* | |
H16B | 1.4664 | 1.1766 | 0.0334 | 0.073* | |
H16C | 1.3068 | 1.2702 | −0.0369 | 0.073* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.0584 (5) | 0.0864 (7) | 0.0526 (4) | −0.0214 (5) | 0.0165 (4) | 0.0042 (5) |
O1 | 0.0448 (12) | 0.0607 (15) | 0.0420 (11) | −0.0054 (10) | −0.0048 (9) | −0.0107 (10) |
O2 | 0.0358 (11) | 0.0697 (15) | 0.0758 (16) | 0.0112 (11) | 0.0029 (11) | −0.0032 (13) |
C1 | 0.0427 (15) | 0.0443 (18) | 0.0368 (14) | −0.0029 (13) | 0.0060 (12) | −0.0063 (12) |
C2 | 0.0450 (15) | 0.0397 (16) | 0.0451 (15) | −0.0061 (14) | 0.0033 (12) | −0.0024 (14) |
C3 | 0.0341 (14) | 0.059 (2) | 0.0348 (14) | −0.0067 (13) | 0.0003 (12) | 0.0086 (14) |
C4 | 0.0455 (17) | 0.060 (2) | 0.0342 (15) | −0.0006 (15) | 0.0076 (12) | −0.0077 (14) |
C5 | 0.0429 (16) | 0.0426 (17) | 0.0424 (15) | −0.0034 (13) | 0.0036 (12) | −0.0102 (14) |
C6 | 0.0327 (14) | 0.0343 (15) | 0.0311 (13) | 0.0039 (11) | −0.0008 (11) | 0.0017 (11) |
C7 | 0.0349 (14) | 0.0312 (14) | 0.0366 (13) | 0.0003 (11) | 0.0008 (11) | −0.0014 (11) |
C8 | 0.0336 (13) | 0.0300 (14) | 0.0352 (13) | −0.0006 (10) | 0.0035 (11) | −0.0050 (11) |
C9 | 0.0365 (14) | 0.0340 (15) | 0.0352 (14) | −0.0047 (12) | 0.0001 (11) | −0.0025 (12) |
N10 | 0.0327 (11) | 0.0390 (13) | 0.0359 (11) | −0.0026 (10) | 0.0041 (9) | −0.0007 (10) |
C11 | 0.0444 (17) | 0.0428 (18) | 0.0535 (18) | 0.0140 (13) | 0.0141 (14) | 0.0073 (14) |
C12 | 0.0468 (17) | 0.0317 (15) | 0.0478 (17) | 0.0072 (12) | 0.0152 (14) | 0.0047 (12) |
C13 | 0.0370 (16) | 0.059 (2) | 0.0447 (17) | −0.0138 (15) | 0.0005 (13) | −0.0033 (15) |
C14 | 0.0316 (14) | 0.074 (2) | 0.0516 (18) | 0.0067 (15) | 0.0024 (13) | 0.0168 (16) |
C15 | 0.0334 (14) | 0.0333 (14) | 0.0441 (15) | −0.0019 (11) | 0.0012 (12) | 0.0058 (12) |
C16 | 0.0463 (16) | 0.055 (2) | 0.0462 (15) | −0.0037 (14) | 0.0140 (13) | 0.0037 (14) |
Cl1—C3 | 1.742 (3) | C9—N10 | 1.506 (4) |
O1—C15 | 1.258 (3) | C9—C13 | 1.526 (4) |
O2—C15 | 1.229 (3) | C9—H9 | 0.9800 |
C1—C2 | 1.373 (4) | N10—C16 | 1.482 (3) |
C1—C6 | 1.394 (4) | N10—C11 | 1.505 (4) |
C1—H2 | 0.9300 | N10—H10X | 0.881 (17) |
C2—C3 | 1.360 (4) | C11—C14 | 1.511 (5) |
C2—H3 | 0.9300 | C11—C12 | 1.520 (4) |
C3—C4 | 1.378 (5) | C11—H11 | 0.9800 |
C4—C5 | 1.380 (4) | C12—H12A | 0.9700 |
C4—H4 | 0.9300 | C12—H12B | 0.9700 |
C5—C6 | 1.388 (4) | C13—C14 | 1.530 (5) |
C5—H5 | 0.9300 | C13—H13A | 0.9700 |
C6—C7 | 1.517 (4) | C13—H13B | 0.9700 |
C7—C12 | 1.533 (4) | C14—H14A | 0.9700 |
C7—C8 | 1.538 (4) | C14—H14B | 0.9700 |
C7—H7 | 0.9800 | C16—H16A | 0.9599 |
C8—C15 | 1.542 (4) | C16—H16B | 0.9599 |
C8—C9 | 1.544 (4) | C16—H16C | 0.9599 |
C8—H8 | 0.9800 | ||
C2—C1—C6 | 121.2 (3) | C11—N10—C9 | 101.8 (2) |
C2—C1—H2 | 119.4 | C16—N10—H10X | 112.8 (17) |
C6—C1—H2 | 119.4 | C11—N10—H10X | 110 (2) |
C3—C2—C1 | 119.7 (3) | C9—N10—H10X | 104.4 (19) |
C3—C2—H3 | 120.1 | N10—C11—C14 | 102.7 (3) |
C1—C2—H3 | 120.1 | N10—C11—C12 | 106.7 (2) |
C2—C3—C4 | 121.4 (3) | C14—C11—C12 | 114.1 (3) |
C2—C3—Cl1 | 119.8 (2) | N10—C11—H11 | 111.0 |
C4—C3—Cl1 | 118.8 (2) | C14—C11—H11 | 111.0 |
C3—C4—C5 | 118.5 (3) | C12—C11—H11 | 111.0 |
C3—C4—H4 | 120.8 | C11—C12—C7 | 111.1 (2) |
C5—C4—H4 | 120.8 | C11—C12—H12A | 109.4 |
C4—C5—C6 | 121.8 (3) | C7—C12—H12A | 109.4 |
C4—C5—H5 | 119.1 | C11—C12—H12B | 109.4 |
C6—C5—H5 | 119.1 | C7—C12—H12B | 109.4 |
C5—C6—C1 | 117.4 (3) | H12A—C12—H12B | 108.0 |
C5—C6—C7 | 119.7 (2) | C9—C13—C14 | 105.1 (3) |
C1—C6—C7 | 122.8 (2) | C9—C13—H13A | 110.7 |
C6—C7—C12 | 113.6 (2) | C14—C13—H13A | 110.7 |
C6—C7—C8 | 113.4 (2) | C9—C13—H13B | 110.7 |
C12—C7—C8 | 111.7 (2) | C14—C13—H13B | 110.7 |
C6—C7—H7 | 105.8 | H13A—C13—H13B | 108.8 |
C12—C7—H7 | 105.8 | C11—C14—C13 | 105.7 (2) |
C8—C7—H7 | 105.8 | C11—C14—H14A | 110.6 |
C7—C8—C15 | 113.2 (2) | C13—C14—H14A | 110.6 |
C7—C8—C9 | 109.9 (2) | C11—C14—H14B | 110.6 |
C15—C8—C9 | 110.2 (2) | C13—C14—H14B | 110.6 |
C7—C8—H8 | 107.8 | H14A—C14—H14B | 108.7 |
C15—C8—H8 | 107.8 | O2—C15—O1 | 126.1 (3) |
C9—C8—H8 | 107.8 | O2—C15—C8 | 118.2 (3) |
N10—C9—C13 | 102.5 (2) | O1—C15—C8 | 115.7 (2) |
N10—C9—C8 | 106.5 (2) | N10—C16—H16A | 109.5 |
C13—C9—C8 | 114.1 (2) | N10—C16—H16B | 109.5 |
N10—C9—H9 | 111.1 | H16A—C16—H16B | 109.5 |
C13—C9—H9 | 111.1 | N10—C16—H16C | 109.5 |
C8—C9—H9 | 111.1 | H16A—C16—H16C | 109.5 |
C16—N10—C11 | 113.8 (2) | H16B—C16—H16C | 109.5 |
C16—N10—C9 | 113.5 (2) | ||
C6—C1—C2—C3 | 1.0 (4) | C13—C9—N10—C16 | −77.9 (3) |
C1—C2—C3—C4 | −0.2 (4) | C8—C9—N10—C16 | 162.0 (2) |
C1—C2—C3—Cl1 | −180.0 (2) | C13—C9—N10—C11 | 44.8 (3) |
C2—C3—C4—C5 | −0.6 (4) | C8—C9—N10—C11 | −75.3 (2) |
Cl1—C3—C4—C5 | 179.2 (2) | C16—N10—C11—C14 | 77.3 (3) |
C3—C4—C5—C6 | 0.6 (5) | C9—N10—C11—C14 | −45.3 (2) |
C4—C5—C6—C1 | 0.2 (4) | C16—N10—C11—C12 | −162.4 (2) |
C4—C5—C6—C7 | −177.7 (3) | C9—N10—C11—C12 | 75.1 (3) |
C2—C1—C6—C5 | −1.0 (4) | N10—C11—C12—C7 | −62.0 (3) |
C2—C1—C6—C7 | 176.8 (3) | C14—C11—C12—C7 | 50.7 (3) |
C5—C6—C7—C12 | 160.8 (2) | C6—C7—C12—C11 | 177.2 (2) |
C1—C6—C7—C12 | −16.9 (4) | C8—C7—C12—C11 | 47.4 (3) |
C5—C6—C7—C8 | −70.3 (3) | N10—C9—C13—C14 | −27.1 (3) |
C1—C6—C7—C8 | 112.0 (3) | C8—C9—C13—C14 | 87.5 (3) |
C6—C7—C8—C15 | −53.2 (3) | N10—C11—C14—C13 | 28.0 (3) |
C12—C7—C8—C15 | 76.6 (3) | C12—C11—C14—C13 | −87.0 (3) |
C6—C7—C8—C9 | −177.0 (2) | C9—C13—C14—C11 | −0.5 (3) |
C12—C7—C8—C9 | −47.1 (3) | C7—C8—C15—O2 | 109.1 (3) |
C7—C8—C9—N10 | 62.1 (2) | C9—C8—C15—O2 | −127.3 (3) |
C15—C8—C9—N10 | −63.3 (3) | C7—C8—C15—O1 | −70.6 (3) |
C7—C8—C9—C13 | −50.1 (3) | C9—C8—C15—O1 | 53.0 (3) |
C15—C8—C9—C13 | −175.6 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
N10—H10X···O1 | 0.88 (2) | 1.80 (2) | 2.599 (3) | 150 (3) |
C9—H9···O1i | 0.98 | 2.28 | 3.148 (4) | 146 |
C16—H16A···O2ii | 0.96 | 2.48 | 3.282 (4) | 141 |
C14—H14A···O2iii | 0.97 | 2.54 | 3.439 (4) | 154 |
Symmetry codes: (i) −x+2, y+1/2, −z; (ii) −x+2, y−1/2, −z; (iii) x+1, y, z. |
Experimental details
Crystal data | |
Chemical formula | C15H18ClNO2 |
Mr | 279.75 |
Crystal system, space group | Monoclinic, P21 |
Temperature (K) | 293 |
a, b, c (Å) | 8.219 (6), 6.501 (4), 12.731 (8) |
β (°) | 100.692 (10) |
V (Å3) | 668.4 (8) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.28 |
Crystal size (mm) | 0.20 × 0.10 × 0.10 |
Data collection | |
Diffractometer | Bruker SMART APEX CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2001) |
Tmin, Tmax | 0.956, 0.976 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 3374, 2760, 2264 |
Rint | 0.042 |
(sin θ/λ)max (Å−1) | 0.642 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.052, 0.125, 0.99 |
No. of reflections | 2760 |
No. of parameters | 177 |
No. of restraints | 2 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.25, −0.21 |
Absolute structure | Flack (1983), 1135 Friedel pairs |
Absolute structure parameter | −0.15 (9) |
Computer programs: SMART (Bruker, 2001), SAINT (Bruker, 2001), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
N10—H10X···O1 | 0.881 (17) | 1.80 (2) | 2.599 (3) | 150 (3) |
C9—H9···O1i | 0.98 | 2.28 | 3.148 (4) | 146 |
C16—H16A···O2ii | 0.96 | 2.48 | 3.282 (4) | 141 |
C14—H14A···O2iii | 0.97 | 2.54 | 3.439 (4) | 154 |
Symmetry codes: (i) −x+2, y+1/2, −z; (ii) −x+2, y−1/2, −z; (iii) x+1, y, z. |
Acknowledgements
This work was supported by the National Natural Science Foundation of China (30570518), the High Technology Research and Development Program of Jiangsu Province of China (BG2007603) and the Science Foundation of the Health Department of Jiangsu Province (H200401).
References
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(2S,3S)-3-(4-halogen-phenyl)tropane-2-carboxylic acid methyl ester and analogues, the so-called "WIN compounds" reported by Clarke et al. (1973), been used extensively in medicine as monoamine uptake inhibitors and dopamine transporter (Carroll et al., 1991, 2005). Among these, only several crystal structures have been reported (Meltzer et al., 1997, 2001; Zhu et al.,1999) (Cambridge Structural Database, Version 5.29, update of November 2007; Allen, 2002). As a vital intermediate compound for the stepwise reactions of dopamine transporter-imaging agent, the crystal structure of the title compound, (I) (Fig. 1), has not been studied yet. The internal torsion angles of the tropane ring in (I) are comparable to those tropane rings in the crystal structures reported for cocaine and its derivatives. There is an intramolecular hydrogen bond between the N10 atom in the tropane ring and O1 atom of the carboxylate group (Table 1). The crystal structure is further stabilized by many weak C—H···O interactions between the intramolecules along ab plane to form two-dimensional supramolecular network.(Fig. 2 and Table 1).