organic compounds
Ethyl 2-allylsulfanyl-4-(4-methoxyphenyl)-6-methyl-1,4-dihydropyrimidine-5-carboxylate
aDepartment of Physics, The New College (Autonomous), Chennai 600 014, India, and bDepartment of Chemistry, The New College (Autonomous), Chennai 600 014, India
*Correspondence e-mail: mnizam_new@yahoo.in
In the title compound, C18H22N2O3S, the pyrimidine ring is not planar. It adopts a half-chair conformation The is characterized by classical N—H⋯O and C—H⋯O inter- and intramolecular hydrogen bonds, respectively. The title compound exhibits a wide spectrum of biological activities.
Related literature
For related literature, see: Allen et al. (1987); Biginelli (1893); Cremer & Pople (1975); Gurskaya et al. (2003a,b); Kappe (1993); Kappe et al. (1997); Li (2006); Nardelli (1983); Nizam Mohideen et al. (2008); Overman et al. (1995); Snider et al. (1996).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2004); cell APEX2 and SAINT (Bruker, 2004); data reduction: SAINT and XPREP (Bruker, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2003).
Supporting information
10.1107/S1600536808026664/pv2100sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536808026664/pv2100Isup2.hkl
To a suspension of NaH (0.100 g, 2 mmol, 50% dispersion in mineral oil washed with hexane) in dry THF (25 ml) was added a solution of dihydropyrimidone, (0.594 g, 2 mmol) in dry THF (10 ml) and stirred in an atmosphere of N2 for one hour. Then a solution of allyl bromide (0.2 ml, 2.5 mmol) in dry THF (5 ml) was added drop wise and stirred for futher four hours. (TLC control, silica, ethyl acetate: hexane 1:9 as eluent). Evaporation of solvent under reduced pressure, followed by purification of the residue by
gave a yellow solid. Single crystals of the title compound suitable for X-ray diffraction were obtained by slow evaporation of a solution in ethanol (mp 368–369 K).All H atoms were positioned geometrically and allowed to ride on their parent C atoms, with C—H distances fixed in the range 0.93–0.98 Å and N—H distance of 0.86 Å, with Uiso(H) = 1.5Ueq(C) for methyl H atoms and Uiso(H) = 1.2Ueq(C, N) for other H atoms.
Data collection: APEX2 (Bruker, 2004); cell
APEX2 and SAINT (Bruker, 2004); data reduction: SAINT and XPREP (Bruker, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: 'SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2003)'.Fig. 1. The molecular configuration and atom-numbering scheme for (I). Displacement ellipsoids are drawn at the 50% probability level. |
C18H22N2O3S | F(000) = 1472 |
Mr = 346.44 | Dx = 1.275 Mg m−3 |
Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -C 2yc | Cell parameters from 7889 reflections |
a = 28.325 (5) Å | θ = 2.6–25° |
b = 7.410 (2) Å | µ = 0.20 mm−1 |
c = 20.202 (4) Å | T = 293 K |
β = 121.61 (3)° | Needle, yellow |
V = 3610.9 (18) Å3 | 0.4 × 0.2 × 0.1 mm |
Z = 8 |
Bruker Kappa APEXII CCD diffractometer' | 3183 independent reflections |
Radiation source: fine-focus sealed tube | 2722 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.026 |
ω and ϕ scan | θmax = 25.0°, θmin = 1.7° |
Absorption correction: multi-scan (SADABS; Bruker, 2004) | h = −33→33 |
Tmin = 0.954, Tmax = 0.983 | k = −8→8 |
16675 measured reflections | l = −24→24 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.045 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.140 | H-atom parameters constrained |
S = 1.05 | w = 1/[σ2(Fo2) + (0.0785P)2 + 3.5811P] where P = (Fo2 + 2Fc2)/3 |
3183 reflections | (Δ/σ)max = 0.002 |
220 parameters | Δρmax = 0.48 e Å−3 |
0 restraints | Δρmin = −0.33 e Å−3 |
C18H22N2O3S | V = 3610.9 (18) Å3 |
Mr = 346.44 | Z = 8 |
Monoclinic, C2/c | Mo Kα radiation |
a = 28.325 (5) Å | µ = 0.20 mm−1 |
b = 7.410 (2) Å | T = 293 K |
c = 20.202 (4) Å | 0.4 × 0.2 × 0.1 mm |
β = 121.61 (3)° |
Bruker Kappa APEXII CCD diffractometer' | 3183 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2004) | 2722 reflections with I > 2σ(I) |
Tmin = 0.954, Tmax = 0.983 | Rint = 0.026 |
16675 measured reflections |
R[F2 > 2σ(F2)] = 0.045 | 0 restraints |
wR(F2) = 0.140 | H-atom parameters constrained |
S = 1.05 | Δρmax = 0.48 e Å−3 |
3183 reflections | Δρmin = −0.33 e Å−3 |
220 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
S1 | 0.15041 (3) | 0.63300 (8) | 0.44134 (3) | 0.0551 (2) | |
O1 | 0.33272 (7) | 1.1779 (2) | 0.34204 (10) | 0.0580 (4) | |
O2 | 0.06407 (7) | 1.4020 (2) | 0.24877 (9) | 0.0522 (4) | |
O3 | 0.01426 (7) | 1.2100 (2) | 0.15153 (9) | 0.0617 (5) | |
N1 | 0.14728 (7) | 0.9848 (2) | 0.40787 (9) | 0.0385 (4) | |
N2 | 0.09759 (7) | 0.7816 (2) | 0.30377 (10) | 0.0387 (4) | |
H2 | 0.0954 | 0.6715 | 0.2889 | 0.046* | |
C1 | 0.23063 (8) | 1.2512 (3) | 0.39532 (11) | 0.0399 (5) | |
H1 | 0.2280 | 1.3171 | 0.4325 | 0.048* | |
C2 | 0.27875 (9) | 1.2591 (3) | 0.39437 (13) | 0.0456 (5) | |
H2A | 0.3082 | 1.3292 | 0.4308 | 0.055* | |
C3 | 0.28341 (8) | 1.1622 (3) | 0.33898 (12) | 0.0406 (5) | |
C4 | 0.23922 (9) | 1.0596 (3) | 0.28488 (12) | 0.0424 (5) | |
H4 | 0.2418 | 0.9951 | 0.2474 | 0.051* | |
C5 | 0.19079 (8) | 1.0533 (3) | 0.28672 (11) | 0.0387 (5) | |
H5 | 0.1611 | 0.9844 | 0.2499 | 0.046* | |
C6 | 0.18558 (8) | 1.1467 (2) | 0.34195 (11) | 0.0331 (4) | |
C7 | 0.13489 (8) | 1.1274 (2) | 0.34918 (11) | 0.0334 (4) | |
H7 | 0.1298 | 1.2415 | 0.3692 | 0.040* | |
C8 | 0.13171 (8) | 0.8265 (3) | 0.38169 (11) | 0.0359 (4) | |
C9 | 0.06696 (8) | 0.9154 (3) | 0.25004 (11) | 0.0355 (4) | |
C10 | 0.08227 (8) | 1.0897 (3) | 0.27177 (11) | 0.0341 (4) | |
C11 | 0.02055 (9) | 0.8432 (3) | 0.17415 (13) | 0.0484 (5) | |
H11A | −0.0117 | 0.9173 | 0.1562 | 0.073* | |
H11B | 0.0123 | 0.7217 | 0.1813 | 0.073* | |
H11C | 0.0315 | 0.8444 | 0.1365 | 0.073* | |
C12 | 0.05336 (8) | 1.2485 (3) | 0.22475 (12) | 0.0382 (5) | |
C13 | −0.01773 (13) | 1.3590 (4) | 0.10104 (16) | 0.0718 (8) | |
H13A | 0.0067 | 1.4473 | 0.0989 | 0.086* | |
H13B | −0.0387 | 1.4178 | 0.1204 | 0.086* | |
C14 | −0.05525 (19) | 1.2832 (6) | 0.0238 (2) | 0.1255 (18) | |
H14A | −0.0341 | 1.2191 | 0.0066 | 0.188* | |
H14B | −0.0755 | 1.3789 | −0.0120 | 0.188* | |
H14C | −0.0807 | 1.2017 | 0.0261 | 0.188* | |
C15 | 0.33997 (12) | 1.0703 (4) | 0.28976 (19) | 0.0700 (8) | |
H15A | 0.3327 | 0.9462 | 0.2949 | 0.105* | |
H15B | 0.3774 | 1.0823 | 0.3016 | 0.105* | |
H15C | 0.3147 | 1.1098 | 0.2374 | 0.105* | |
C16 | 0.19334 (12) | 0.7289 (4) | 0.53535 (15) | 0.0662 (7) | |
H16A | 0.2215 | 0.6410 | 0.5676 | 0.079* | |
H16B | 0.2122 | 0.8324 | 0.5304 | 0.079* | |
C17 | 0.16579 (19) | 0.7873 (5) | 0.57661 (19) | 0.0867 (10) | |
H17 | 0.1891 | 0.8174 | 0.6287 | 0.104* | |
C18 | 0.1139 (2) | 0.8017 (6) | 0.5498 (3) | 0.1070 (13) | |
H18A | 0.0884 | 0.7736 | 0.4981 | 0.128* | |
H18B | 0.1015 | 0.8404 | 0.5820 | 0.128* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.0785 (5) | 0.0335 (3) | 0.0492 (4) | −0.0010 (3) | 0.0305 (3) | 0.0058 (2) |
O1 | 0.0468 (9) | 0.0614 (11) | 0.0707 (11) | −0.0059 (8) | 0.0342 (8) | −0.0012 (9) |
O2 | 0.0615 (10) | 0.0249 (8) | 0.0522 (9) | 0.0007 (7) | 0.0174 (8) | −0.0004 (7) |
O3 | 0.0692 (11) | 0.0348 (9) | 0.0446 (9) | 0.0068 (8) | 0.0045 (8) | 0.0012 (7) |
N1 | 0.0498 (10) | 0.0318 (9) | 0.0347 (9) | −0.0012 (7) | 0.0226 (8) | 0.0015 (7) |
N2 | 0.0510 (10) | 0.0219 (8) | 0.0409 (9) | 0.0009 (7) | 0.0224 (8) | −0.0030 (7) |
C1 | 0.0456 (11) | 0.0325 (11) | 0.0356 (10) | −0.0020 (8) | 0.0171 (9) | −0.0050 (8) |
C2 | 0.0414 (11) | 0.0391 (12) | 0.0444 (11) | −0.0100 (9) | 0.0142 (9) | −0.0054 (9) |
C3 | 0.0393 (11) | 0.0361 (11) | 0.0454 (11) | 0.0010 (8) | 0.0215 (9) | 0.0083 (9) |
C4 | 0.0521 (12) | 0.0385 (11) | 0.0400 (11) | −0.0019 (9) | 0.0264 (10) | −0.0029 (9) |
C5 | 0.0419 (11) | 0.0337 (11) | 0.0358 (10) | −0.0082 (8) | 0.0171 (9) | −0.0065 (8) |
C6 | 0.0395 (10) | 0.0237 (9) | 0.0313 (9) | 0.0004 (7) | 0.0151 (8) | 0.0028 (7) |
C7 | 0.0415 (10) | 0.0240 (9) | 0.0331 (9) | −0.0002 (8) | 0.0184 (8) | −0.0013 (7) |
C8 | 0.0436 (11) | 0.0294 (10) | 0.0383 (10) | 0.0022 (8) | 0.0239 (9) | 0.0033 (8) |
C9 | 0.0372 (10) | 0.0307 (10) | 0.0387 (10) | −0.0005 (8) | 0.0200 (9) | −0.0024 (8) |
C10 | 0.0376 (10) | 0.0270 (10) | 0.0359 (10) | 0.0006 (8) | 0.0180 (8) | −0.0002 (8) |
C11 | 0.0488 (13) | 0.0345 (12) | 0.0484 (12) | −0.0045 (9) | 0.0161 (10) | −0.0061 (9) |
C12 | 0.0380 (10) | 0.0333 (11) | 0.0405 (11) | 0.0007 (8) | 0.0187 (9) | 0.0004 (8) |
C13 | 0.0752 (18) | 0.0447 (15) | 0.0550 (15) | 0.0156 (13) | 0.0063 (13) | 0.0100 (12) |
C14 | 0.133 (3) | 0.085 (3) | 0.065 (2) | 0.022 (2) | −0.013 (2) | 0.0010 (19) |
C15 | 0.0728 (17) | 0.0696 (18) | 0.094 (2) | 0.0004 (14) | 0.0614 (17) | 0.0047 (16) |
C16 | 0.0784 (18) | 0.0486 (15) | 0.0485 (14) | −0.0047 (13) | 0.0173 (13) | 0.0134 (11) |
C17 | 0.129 (3) | 0.067 (2) | 0.0587 (17) | −0.014 (2) | 0.045 (2) | −0.0015 (15) |
C18 | 0.141 (4) | 0.098 (3) | 0.103 (3) | 0.017 (3) | 0.078 (3) | 0.004 (2) |
S1—C8 | 1.766 (2) | C7—H7 | 0.9800 |
S1—C16 | 1.780 (3) | C9—C10 | 1.359 (3) |
O1—C3 | 1.370 (3) | C9—C11 | 1.501 (3) |
O1—C15 | 1.421 (3) | C10—C12 | 1.464 (3) |
O2—C12 | 1.211 (2) | C11—H11A | 0.9600 |
O3—C12 | 1.334 (3) | C11—H11B | 0.9600 |
O3—C13 | 1.453 (3) | C11—H11C | 0.9600 |
N1—C8 | 1.267 (3) | C12—O2 | 1.211 (2) |
N1—C7 | 1.486 (2) | C13—C14 | 1.464 (4) |
N2—C8 | 1.388 (3) | C13—H13A | 0.9700 |
N2—C9 | 1.389 (3) | C13—H13B | 0.9700 |
N2—H2 | 0.8600 | C14—H14A | 0.9600 |
C1—C2 | 1.374 (3) | C14—H14B | 0.9600 |
C1—C6 | 1.395 (3) | C14—H14C | 0.9600 |
C1—H1 | 0.9300 | C15—H15A | 0.9600 |
C2—C3 | 1.393 (3) | C15—H15B | 0.9600 |
C2—H2A | 0.9300 | C15—H15C | 0.9600 |
C3—C4 | 1.380 (3) | C16—C17 | 1.474 (5) |
C4—C5 | 1.392 (3) | C16—H16A | 0.9700 |
C4—H4 | 0.9300 | C16—H16B | 0.9700 |
C5—C6 | 1.385 (3) | C17—C18 | 1.277 (5) |
C5—H5 | 0.9300 | C17—H17 | 0.9300 |
C6—C7 | 1.524 (3) | C18—H18A | 0.9300 |
C7—C10 | 1.517 (3) | C18—H18B | 0.9300 |
C8—S1—C16 | 101.35 (11) | C9—C11—H11B | 109.5 |
C3—O1—C15 | 117.37 (19) | H11A—C11—H11B | 109.5 |
C12—O3—C13 | 117.77 (18) | C9—C11—H11C | 109.5 |
C8—N1—C7 | 116.11 (16) | H11A—C11—H11C | 109.5 |
C8—N2—C9 | 119.55 (16) | H11B—C11—H11C | 109.5 |
C8—N2—H2 | 120.2 | O2—C12—O3 | 122.22 (18) |
C9—N2—H2 | 120.2 | O2—C12—O3 | 122.22 (18) |
C2—C1—C6 | 121.64 (19) | O2—C12—C10 | 123.91 (19) |
C2—C1—H1 | 119.2 | O2—C12—C10 | 123.91 (19) |
C6—C1—H1 | 119.2 | O3—C12—C10 | 113.86 (17) |
C1—C2—C3 | 120.11 (19) | O3—C13—C14 | 107.1 (2) |
C1—C2—H2A | 119.9 | O3—C13—H13A | 110.3 |
C3—C2—H2A | 119.9 | C14—C13—H13A | 110.3 |
O1—C3—C4 | 124.2 (2) | O3—C13—H13B | 110.3 |
O1—C3—C2 | 116.34 (19) | C14—C13—H13B | 110.3 |
C4—C3—C2 | 119.44 (19) | H13A—C13—H13B | 108.5 |
C3—C4—C5 | 119.65 (19) | C13—C14—H14A | 109.5 |
C3—C4—H4 | 120.2 | C13—C14—H14B | 109.5 |
C5—C4—H4 | 120.2 | H14A—C14—H14B | 109.5 |
C6—C5—C4 | 121.81 (18) | C13—C14—H14C | 109.5 |
C6—C5—H5 | 119.1 | H14A—C14—H14C | 109.5 |
C4—C5—H5 | 119.1 | H14B—C14—H14C | 109.5 |
C5—C6—C1 | 117.34 (18) | O1—C15—H15A | 109.5 |
C5—C6—C7 | 122.25 (17) | O1—C15—H15B | 109.5 |
C1—C6—C7 | 120.26 (17) | H15A—C15—H15B | 109.5 |
N1—C7—C10 | 112.63 (15) | O1—C15—H15C | 109.5 |
N1—C7—C6 | 107.63 (15) | H15A—C15—H15C | 109.5 |
C10—C7—C6 | 112.61 (15) | H15B—C15—H15C | 109.5 |
N1—C7—H7 | 107.9 | C17—C16—S1 | 116.9 (2) |
C10—C7—H7 | 107.9 | C17—C16—H16A | 108.1 |
C6—C7—H7 | 107.9 | S1—C16—H16A | 108.1 |
N1—C8—N2 | 125.34 (17) | C17—C16—H16B | 108.1 |
N1—C8—S1 | 123.53 (15) | S1—C16—H16B | 108.1 |
N2—C8—S1 | 111.13 (14) | H16A—C16—H16B | 107.3 |
C10—C9—N2 | 117.60 (18) | C18—C17—C16 | 128.1 (3) |
C10—C9—C11 | 128.98 (19) | C18—C17—H17 | 115.9 |
N2—C9—C11 | 113.43 (17) | C16—C17—H17 | 115.9 |
C9—C10—C12 | 125.37 (18) | C17—C18—H18A | 120.0 |
C9—C10—C7 | 118.86 (17) | C17—C18—H18B | 120.0 |
C12—C10—C7 | 115.70 (16) | H18A—C18—H18B | 120.0 |
C9—C11—H11A | 109.5 | ||
C6—C1—C2—C3 | 0.3 (3) | C16—S1—C8—N2 | 179.62 (16) |
C15—O1—C3—C4 | −5.1 (3) | C8—N2—C9—C10 | 17.0 (3) |
C15—O1—C3—C2 | 175.6 (2) | C8—N2—C9—C11 | −163.18 (18) |
C1—C2—C3—O1 | 179.86 (19) | N2—C9—C10—C12 | −176.65 (17) |
C1—C2—C3—C4 | 0.5 (3) | C11—C9—C10—C12 | 3.6 (3) |
O1—C3—C4—C5 | −179.79 (19) | N2—C9—C10—C7 | 6.3 (3) |
C2—C3—C4—C5 | −0.5 (3) | C11—C9—C10—C7 | −173.39 (19) |
C3—C4—C5—C6 | −0.4 (3) | N1—C7—C10—C9 | −29.8 (2) |
C4—C5—C6—C1 | 1.2 (3) | C6—C7—C10—C9 | 92.1 (2) |
C4—C5—C6—C7 | −174.30 (18) | N1—C7—C10—C12 | 152.88 (16) |
C2—C1—C6—C5 | −1.2 (3) | C6—C7—C10—C12 | −85.2 (2) |
C2—C1—C6—C7 | 174.42 (18) | C13—O3—C12—O2 | −2.9 (3) |
C8—N1—C7—C10 | 31.2 (2) | C13—O3—C12—O2 | −2.9 (3) |
C8—N1—C7—C6 | −93.6 (2) | C13—O3—C12—C10 | 178.3 (2) |
C5—C6—C7—N1 | 93.2 (2) | C9—C10—C12—O2 | 171.3 (2) |
C1—C6—C7—N1 | −82.1 (2) | C7—C10—C12—O2 | −11.6 (3) |
C5—C6—C7—C10 | −31.5 (2) | C9—C10—C12—O2 | 171.3 (2) |
C1—C6—C7—C10 | 153.14 (17) | C7—C10—C12—O2 | −11.6 (3) |
C7—N1—C8—N2 | −10.0 (3) | C9—C10—C12—O3 | −10.0 (3) |
C7—N1—C8—S1 | 170.98 (14) | C7—C10—C12—O3 | 167.10 (17) |
C9—N2—C8—N1 | −16.0 (3) | C12—O3—C13—C14 | 177.0 (3) |
C9—N2—C8—S1 | 163.17 (14) | C8—S1—C16—C17 | 90.0 (2) |
C16—S1—C8—N1 | −1.2 (2) | S1—C16—C17—C18 | −10.8 (5) |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2···O2i | 0.86 | 2.16 | 2.990 (2) | 161 |
C7—H7···O2 | 0.98 | 2.46 | 2.831 (3) | 102 |
Symmetry code: (i) x, y−1, z. |
Experimental details
Crystal data | |
Chemical formula | C18H22N2O3S |
Mr | 346.44 |
Crystal system, space group | Monoclinic, C2/c |
Temperature (K) | 293 |
a, b, c (Å) | 28.325 (5), 7.410 (2), 20.202 (4) |
β (°) | 121.61 (3) |
V (Å3) | 3610.9 (18) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 0.20 |
Crystal size (mm) | 0.4 × 0.2 × 0.1 |
Data collection | |
Diffractometer | Bruker Kappa APEXII CCD diffractometer' |
Absorption correction | Multi-scan (SADABS; Bruker, 2004) |
Tmin, Tmax | 0.954, 0.983 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 16675, 3183, 2722 |
Rint | 0.026 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.045, 0.140, 1.05 |
No. of reflections | 3183 |
No. of parameters | 220 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.48, −0.33 |
Computer programs: APEX2 (Bruker, 2004), APEX2 and SAINT (Bruker, 2004), SAINT and XPREP (Bruker, 2004), SHELXS97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 1997), 'SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2003)'.
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2···O2i | 0.86 | 2.16 | 2.990 (2) | 161.1 |
C7—H7···O2 | 0.98 | 2.46 | 2.831 (3) | 101.9 |
Symmetry code: (i) x, y−1, z. |
Acknowledgements
MNM, AR, and CAMAH thank the Management of The New College, Chennai, India, for providing the necessary facilities.
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The title compound, (I), belongs to the class of 5-substituted 1,2,3,4-tetrahydropyrimidin-2-ones, which are known as `Biginelli compounds' (Kappe, 1993). The Biginelli reaction is a classic multicomponent reaction (Biginelli, 1893). The biological activity of some isolated alkaloids has been attributed to the presence of the dihydropyrimidinone moiety in the molecules (Overman et al., 1995) and the conformation of the pyrimidine ring (Kappe et al., 1997; Gurskaya et al., 2003a,b). Most important among them are batzelladine alkaloids, which have been found to be potent HIVgp-120-CD4 inhibitors (Snider et al., 1996). The aim of the present work was to study classical and extended Biginelli reactions. As part of our ongoing investigation of pyrimidine derivatives, the title compound, (I), has been prepared and its crystal structure is presented here.
The bond lengths and angles in the title compound (Fig. 1) are comparable with ethyl 1,2,3,4-tetrahydro-6-methyl-2-oxo-4-phenylpyrimidine-5-carboxylate, a structure closely related to (I) (Nizam Mohideen et al., 2008). The torsion angles [C1—C6—C7—C10 = 153.1 (2), C5—C6—C7—C10 = -31.5 (2), C9—C10—C12—O2 = 171.3 (2), C7—C10—C12—O2 = -11.6 (3), C9—C10—C12—O3 = -10.1 (1) and C7—C10—C12—O3 = 167.1 (2) °] differs from the torsion angles [47.6 (2), -137.1 (2), 10.1 (2), -167.8 (2) -171.5 (2) and 10.5 (2) °] in the reported structure mentioned above.
In (I), the heterocyclic ring (atoms N1, N2, C7, C8, C9, C10) of the dihydropyrimidine group is not planar, as indicated by the displacement of atom C7 from the least-squares plane [0.212 (1) Å] and by the C8—N1—C7—C10 torsion angle [31.1 (1) °]. Atom C11 deviating by -0.204 (1) Å from the least squares plane of the pyrimidine ring. The pyrimidine ring adopts half chair conformation; the puckering parameters are q2 = 0.312 (1) Å, ϕ = 236.3 (2)°, and θ = 104.2 (1)° (Cremer & Pople, 1975), and the lowest displacement asymmetry parameters ΔS(C7) is 2.3 (1)°, Δ2(C10) is 22.4 (1)° (Nardelli, 1983).
The benzene ring is planar, the larget displacement observed being -0.008 (1) Å for atom C6. The dihedral angle between the pyrimidine and benzene rings is 89.5 (1)°, close to the value of 86.5 (1)° found in ethyl 1,2,3,4-tetrahydro-6-methyl-2-oxo-4-phenylpyrimidine-5-carboxylate.
The crystal packing is characterized by classical N—H···O and C—H···O inter and intramolecular hydrogen bonds (Table 1).