organic compounds
6-Cyclohexylmethyl-2-cyclohexylsulfanyl-5-isopropylpyrimidin-4(3H)-one
aSchool of Chemical Science and Technology, Yunnan University, Kunming 650091, People's Republic of China, and bSchool of Chemical Science and Technology, Key Laboratory of Medicinal Chemistry for Natural Resources, (Ministry of Education), Yunnan University, Kunming 650091, People's Republic of China
*Correspondence e-mail: yphe@ynu.edu.cn
The title compound, C20H32N2OS, was obtained during the course of our investigation on 2-alkylsulfanyl-6-benzyl-3,4-dihydropyrimidin-4(3H)-ones (S–DABOs) showing favourable anti-HIV-1 activity. Both cyclohexane rings adopt chair conformations. The angle at the methylene C atom linking the pyrimidine and cyclohexane ring is 113.7 (3)°, which is in the range considered optimal for maximum activity of non-nucleoside reverse transcriptase inhibitors. Intermolecular N—H⋯O hydrogen bonds link the molecules into dimers and stabilize the of the compound. In addition, an intramolecular C—H⋯O hydrogen bond is observed.
Related literature
For related literature, see: He et al. (2004); Ettorre et al. (1996, 1998); Rao et al. (2007).
Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 1998); cell SAINT (Bruker, 1998); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536808025592/wn2273sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536808025592/wn2273Isup2.hkl
With 2-cyclohexylacetonitrile as the starting material, the title compound was synthesized according to the procedure of He et al. (2004). Single crystals were obtained from a mixture of ethyl acetate and petroleum ether by slow evaporation at room temperature.
Methyl H atoms were placed in calculated positions with C—H = 0.96 Å and the torsion angle was refined to fit the electron density; Uiso(H) = 1.5Ueq(C). Other H atoms were placed in calculated positions with C—H = 0.97–0.98 Å and N—H = 0.86 Å, and refined in riding mode; Uiso(H) = 1.2Ueq(C, N).
Data collection: SMART (Bruker, 1998); cell
SAINT (Bruker, 1998); data reduction: SAINT (Bruker, 1998); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).C20H32N2OS | Z = 2 |
Mr = 348.54 | F(000) = 380 |
Triclinic, P1 | Dx = 1.122 Mg m−3 |
a = 9.9549 (16) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 10.9542 (17) Å | Cell parameters from 4697 reflections |
c = 12.1054 (19) Å | θ = 1.9–28.3° |
α = 63.250 (2)° | µ = 0.17 mm−1 |
β = 69.195 (2)° | T = 298 K |
γ = 63.033 (2)° | Block, colourless |
V = 1031.5 (3) Å3 | 0.19 × 0.14 × 0.12 mm |
Bruker SMART CCD area-detector diffractometer | 4697 independent reflections |
Radiation source: fine-focus sealed tube | 2103 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.047 |
ϕ and ω scans | θmax = 28.3°, θmin = 1.9° |
Absorption correction: multi-scan (SADABS; Bruker, 1998) | h = −13→13 |
Tmin = 0.969, Tmax = 0.980 | k = −13→14 |
9017 measured reflections | l = −16→15 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.065 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.216 | H-atom parameters constrained |
S = 0.88 | w = 1/[σ2(Fo2) + (0.1P)2 + 0.3399P] where P = (Fo2 + 2Fc2)/3 |
4697 reflections | (Δ/σ)max < 0.001 |
219 parameters | Δρmax = 0.18 e Å−3 |
0 restraints | Δρmin = −0.20 e Å−3 |
C20H32N2OS | γ = 63.033 (2)° |
Mr = 348.54 | V = 1031.5 (3) Å3 |
Triclinic, P1 | Z = 2 |
a = 9.9549 (16) Å | Mo Kα radiation |
b = 10.9542 (17) Å | µ = 0.17 mm−1 |
c = 12.1054 (19) Å | T = 298 K |
α = 63.250 (2)° | 0.19 × 0.14 × 0.12 mm |
β = 69.195 (2)° |
Bruker SMART CCD area-detector diffractometer | 4697 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 1998) | 2103 reflections with I > 2σ(I) |
Tmin = 0.969, Tmax = 0.980 | Rint = 0.047 |
9017 measured reflections |
R[F2 > 2σ(F2)] = 0.065 | 0 restraints |
wR(F2) = 0.216 | H-atom parameters constrained |
S = 0.88 | Δρmax = 0.18 e Å−3 |
4697 reflections | Δρmin = −0.20 e Å−3 |
219 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)are estimated using the full covariance matrix. The cell e.s.d.'s are takeninto account individually in the estimation of e.s.d.'s in distances, anglesand torsion angles; correlations between e.s.d.'s in cell parameters are onlyused when they are defined by crystal symmetry. An approximate (isotropic)treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc, and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
S1 | 0.33860 (11) | 0.15552 (12) | 0.30395 (9) | 0.0638 (3) | |
O1 | −0.1114 (3) | 0.0731 (3) | 0.6134 (2) | 0.0669 (8) | |
N1 | 0.1985 (3) | 0.2729 (3) | 0.4863 (2) | 0.0473 (7) | |
N2 | 0.0978 (3) | 0.1230 (3) | 0.4780 (2) | 0.0514 (7) | |
H2 | 0.1069 | 0.0683 | 0.4405 | 0.062* | |
C8 | −0.0217 (4) | 0.1378 (4) | 0.5792 (3) | 0.0492 (8) | |
C7 | 0.2013 (4) | 0.1900 (4) | 0.4349 (3) | 0.0465 (8) | |
C13 | 0.0816 (3) | 0.2939 (3) | 0.5876 (3) | 0.0439 (8) | |
C9 | −0.0283 (4) | 0.2320 (4) | 0.6356 (3) | 0.0492 (8) | |
C10 | −0.1620 (4) | 0.2617 (4) | 0.7421 (4) | 0.0686 (11) | |
H10 | −0.1477 | 0.3255 | 0.7702 | 0.082* | |
C14 | 0.0877 (4) | 0.3902 (4) | 0.6429 (3) | 0.0522 (9) | |
H14A | −0.0149 | 0.4592 | 0.6585 | 0.063* | |
H14B | 0.1521 | 0.4456 | 0.5817 | 0.063* | |
C6 | 0.4652 (4) | 0.2481 (4) | 0.2780 (3) | 0.0551 (9) | |
H6 | 0.4021 | 0.3453 | 0.2833 | 0.066* | |
C15 | 0.1495 (4) | 0.3055 (4) | 0.7659 (3) | 0.0531 (9) | |
H15 | 0.0998 | 0.2329 | 0.8188 | 0.064* | |
C5 | 0.5566 (5) | 0.2656 (5) | 0.1449 (4) | 0.0801 (13) | |
H5A | 0.4871 | 0.3252 | 0.0857 | 0.096* | |
H5B | 0.6106 | 0.1706 | 0.1356 | 0.096* | |
C1 | 0.5698 (4) | 0.1675 (4) | 0.3730 (4) | 0.0675 (11) | |
H1A | 0.6276 | 0.0684 | 0.3734 | 0.081* | |
H1B | 0.5087 | 0.1628 | 0.4566 | 0.081* | |
C20 | 0.3203 (4) | 0.2241 (4) | 0.7442 (4) | 0.0671 (11) | |
H20A | 0.3720 | 0.2930 | 0.6876 | 0.081* | |
H20B | 0.3431 | 0.1559 | 0.7039 | 0.081* | |
C16 | 0.1092 (5) | 0.4041 (5) | 0.8375 (4) | 0.0779 (12) | |
H16A | 0.1537 | 0.4795 | 0.7857 | 0.094* | |
H16B | −0.0014 | 0.4514 | 0.8545 | 0.094* | |
C18 | 0.3361 (5) | 0.2395 (5) | 0.9399 (4) | 0.0860 (13) | |
H18A | 0.3673 | 0.1805 | 1.0210 | 0.103* | |
H18B | 0.3898 | 0.3084 | 0.8947 | 0.103* | |
C2 | 0.6803 (5) | 0.2449 (5) | 0.3405 (4) | 0.0806 (13) | |
H2A | 0.6225 | 0.3418 | 0.3455 | 0.097* | |
H2B | 0.7477 | 0.1910 | 0.4013 | 0.097* | |
C4 | 0.6718 (6) | 0.3368 (6) | 0.1148 (4) | 0.1012 (17) | |
H4A | 0.7343 | 0.3389 | 0.0320 | 0.121* | |
H4B | 0.6168 | 0.4369 | 0.1124 | 0.121* | |
C17 | 0.1662 (5) | 0.3218 (6) | 0.9600 (4) | 0.0909 (15) | |
H17A | 0.1430 | 0.3900 | 1.0003 | 0.109* | |
H17B | 0.1131 | 0.2538 | 1.0158 | 0.109* | |
C19 | 0.3812 (5) | 0.1413 (5) | 0.8657 (4) | 0.0842 (13) | |
H19A | 0.4922 | 0.0985 | 0.8466 | 0.101* | |
H19B | 0.3415 | 0.0624 | 0.9170 | 0.101* | |
C3 | 0.7749 (5) | 0.2569 (6) | 0.2104 (6) | 0.1060 (18) | |
H3A | 0.8383 | 0.1600 | 0.2068 | 0.127* | |
H3B | 0.8420 | 0.3090 | 0.1908 | 0.127* | |
C12 | −0.1652 (6) | 0.1229 (6) | 0.8561 (4) | 0.0948 (15) | |
H12A | −0.1853 | 0.0600 | 0.8335 | 0.142* | |
H12B | −0.2446 | 0.1483 | 0.9239 | 0.142* | |
H12C | −0.0679 | 0.0732 | 0.8823 | 0.142* | |
C11 | −0.3132 (4) | 0.3452 (5) | 0.6950 (5) | 0.0978 (16) | |
H11A | −0.3070 | 0.4320 | 0.6245 | 0.147* | |
H11B | −0.3949 | 0.3714 | 0.7613 | 0.147* | |
H11C | −0.3330 | 0.2846 | 0.6694 | 0.147* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.0637 (6) | 0.0911 (8) | 0.0556 (6) | −0.0395 (6) | 0.0099 (4) | −0.0446 (6) |
O1 | 0.0614 (16) | 0.088 (2) | 0.0772 (18) | −0.0426 (15) | 0.0112 (13) | −0.0516 (16) |
N1 | 0.0487 (16) | 0.0526 (17) | 0.0457 (16) | −0.0201 (14) | −0.0045 (12) | −0.0222 (14) |
N2 | 0.0519 (16) | 0.0645 (19) | 0.0499 (16) | −0.0248 (15) | 0.0003 (13) | −0.0329 (15) |
C8 | 0.0451 (19) | 0.059 (2) | 0.051 (2) | −0.0177 (17) | −0.0052 (15) | −0.0282 (17) |
C7 | 0.0478 (19) | 0.052 (2) | 0.0429 (18) | −0.0194 (16) | −0.0072 (14) | −0.0181 (16) |
C13 | 0.0449 (18) | 0.046 (2) | 0.0426 (18) | −0.0123 (15) | −0.0075 (14) | −0.0211 (16) |
C9 | 0.0432 (18) | 0.058 (2) | 0.053 (2) | −0.0192 (16) | −0.0007 (15) | −0.0295 (17) |
C10 | 0.063 (2) | 0.082 (3) | 0.080 (3) | −0.037 (2) | 0.018 (2) | −0.055 (2) |
C14 | 0.052 (2) | 0.053 (2) | 0.057 (2) | −0.0199 (17) | −0.0023 (16) | −0.0273 (18) |
C6 | 0.061 (2) | 0.054 (2) | 0.052 (2) | −0.0245 (18) | 0.0040 (17) | −0.0273 (18) |
C15 | 0.060 (2) | 0.062 (2) | 0.050 (2) | −0.0301 (18) | 0.0006 (16) | −0.0299 (18) |
C5 | 0.099 (3) | 0.096 (3) | 0.058 (2) | −0.060 (3) | 0.017 (2) | −0.036 (2) |
C1 | 0.058 (2) | 0.069 (3) | 0.072 (3) | −0.022 (2) | −0.015 (2) | −0.020 (2) |
C20 | 0.064 (2) | 0.076 (3) | 0.066 (2) | −0.013 (2) | −0.0122 (19) | −0.040 (2) |
C16 | 0.082 (3) | 0.091 (3) | 0.080 (3) | −0.021 (2) | −0.011 (2) | −0.060 (3) |
C18 | 0.093 (3) | 0.109 (4) | 0.074 (3) | −0.038 (3) | −0.018 (2) | −0.043 (3) |
C2 | 0.062 (3) | 0.075 (3) | 0.113 (4) | −0.023 (2) | −0.024 (3) | −0.035 (3) |
C4 | 0.130 (4) | 0.115 (4) | 0.079 (3) | −0.089 (4) | 0.035 (3) | −0.045 (3) |
C17 | 0.091 (3) | 0.128 (4) | 0.080 (3) | −0.033 (3) | −0.005 (2) | −0.072 (3) |
C19 | 0.080 (3) | 0.094 (3) | 0.082 (3) | −0.012 (2) | −0.026 (2) | −0.043 (3) |
C3 | 0.067 (3) | 0.101 (4) | 0.168 (6) | −0.042 (3) | 0.016 (3) | −0.078 (4) |
C12 | 0.112 (4) | 0.116 (4) | 0.066 (3) | −0.066 (3) | 0.029 (3) | −0.048 (3) |
C11 | 0.053 (3) | 0.095 (4) | 0.133 (4) | −0.021 (2) | 0.017 (3) | −0.062 (3) |
S1—C7 | 1.748 (3) | C1—H1B | 0.9700 |
S1—C6 | 1.817 (3) | C20—C19 | 1.513 (5) |
O1—C8 | 1.233 (4) | C20—H20A | 0.9700 |
N1—C7 | 1.299 (4) | C20—H20B | 0.9700 |
N1—C13 | 1.381 (4) | C16—C17 | 1.505 (6) |
N2—C7 | 1.353 (4) | C16—H16A | 0.9700 |
N2—C8 | 1.383 (4) | C16—H16B | 0.9700 |
N2—H2 | 0.8600 | C18—C17 | 1.502 (6) |
C8—C9 | 1.441 (4) | C18—C19 | 1.520 (6) |
C13—C9 | 1.364 (4) | C18—H18A | 0.9700 |
C13—C14 | 1.512 (4) | C18—H18B | 0.9700 |
C9—C10 | 1.518 (4) | C2—C3 | 1.503 (6) |
C10—C11 | 1.523 (6) | C2—H2A | 0.9700 |
C10—C12 | 1.531 (6) | C2—H2B | 0.9700 |
C10—H10 | 0.9800 | C4—C3 | 1.509 (7) |
C14—C15 | 1.531 (5) | C4—H4A | 0.9700 |
C14—H14A | 0.9700 | C4—H4B | 0.9700 |
C14—H14B | 0.9700 | C17—H17A | 0.9700 |
C6—C1 | 1.514 (5) | C17—H17B | 0.9700 |
C6—C5 | 1.516 (5) | C19—H19A | 0.9700 |
C6—H6 | 0.9800 | C19—H19B | 0.9700 |
C15—C20 | 1.508 (5) | C3—H3A | 0.9700 |
C15—C16 | 1.511 (5) | C3—H3B | 0.9700 |
C15—H15 | 0.9800 | C12—H12A | 0.9600 |
C5—C4 | 1.521 (6) | C12—H12B | 0.9600 |
C5—H5A | 0.9700 | C12—H12C | 0.9600 |
C5—H5B | 0.9700 | C11—H11A | 0.9600 |
C1—C2 | 1.523 (5) | C11—H11B | 0.9600 |
C1—H1A | 0.9700 | C11—H11C | 0.9600 |
C7—S1—C6 | 103.08 (16) | C19—C20—H20B | 109.2 |
C7—N1—C13 | 117.1 (3) | H20A—C20—H20B | 107.9 |
C7—N2—C8 | 123.4 (3) | C17—C16—C15 | 112.2 (4) |
C7—N2—H2 | 118.3 | C17—C16—H16A | 109.2 |
C8—N2—H2 | 118.3 | C15—C16—H16A | 109.2 |
O1—C8—N2 | 119.8 (3) | C17—C16—H16B | 109.2 |
O1—C8—C9 | 125.8 (3) | C15—C16—H16B | 109.2 |
N2—C8—C9 | 114.4 (3) | H16A—C16—H16B | 107.9 |
N1—C7—N2 | 122.9 (3) | C17—C18—C19 | 111.7 (4) |
N1—C7—S1 | 123.0 (3) | C17—C18—H18A | 109.3 |
N2—C7—S1 | 114.1 (2) | C19—C18—H18A | 109.3 |
C9—C13—N1 | 123.6 (3) | C17—C18—H18B | 109.3 |
C9—C13—C14 | 122.5 (3) | C19—C18—H18B | 109.3 |
N1—C13—C14 | 113.8 (3) | H18A—C18—H18B | 107.9 |
C13—C9—C8 | 118.6 (3) | C3—C2—C1 | 111.1 (4) |
C13—C9—C10 | 123.7 (3) | C3—C2—H2A | 109.4 |
C8—C9—C10 | 117.7 (3) | C1—C2—H2A | 109.4 |
C9—C10—C11 | 110.7 (3) | C3—C2—H2B | 109.4 |
C9—C10—C12 | 112.6 (3) | C1—C2—H2B | 109.4 |
C11—C10—C12 | 112.1 (3) | H2A—C2—H2B | 108.0 |
C9—C10—H10 | 107.0 | C3—C4—C5 | 112.2 (4) |
C11—C10—H10 | 107.0 | C3—C4—H4A | 109.2 |
C12—C10—H10 | 107.0 | C5—C4—H4A | 109.2 |
C13—C14—C15 | 113.7 (3) | C3—C4—H4B | 109.2 |
C13—C14—H14A | 108.8 | C5—C4—H4B | 109.2 |
C15—C14—H14A | 108.8 | H4A—C4—H4B | 107.9 |
C13—C14—H14B | 108.8 | C18—C17—C16 | 111.4 (3) |
C15—C14—H14B | 108.8 | C18—C17—H17A | 109.3 |
H14A—C14—H14B | 107.7 | C16—C17—H17A | 109.3 |
C1—C6—C5 | 111.3 (3) | C18—C17—H17B | 109.3 |
C1—C6—S1 | 113.1 (3) | C16—C17—H17B | 109.3 |
C5—C6—S1 | 106.7 (2) | H17A—C17—H17B | 108.0 |
C1—C6—H6 | 108.5 | C20—C19—C18 | 111.9 (4) |
C5—C6—H6 | 108.5 | C20—C19—H19A | 109.2 |
S1—C6—H6 | 108.5 | C18—C19—H19A | 109.2 |
C20—C15—C16 | 110.4 (3) | C20—C19—H19B | 109.2 |
C20—C15—C14 | 112.2 (3) | C18—C19—H19B | 109.2 |
C16—C15—C14 | 111.6 (3) | H19A—C19—H19B | 107.9 |
C20—C15—H15 | 107.5 | C2—C3—C4 | 110.2 (4) |
C16—C15—H15 | 107.5 | C2—C3—H3A | 109.6 |
C14—C15—H15 | 107.5 | C4—C3—H3A | 109.6 |
C6—C5—C4 | 111.2 (3) | C2—C3—H3B | 109.6 |
C6—C5—H5A | 109.4 | C4—C3—H3B | 109.6 |
C4—C5—H5A | 109.4 | H3A—C3—H3B | 108.1 |
C6—C5—H5B | 109.4 | C10—C12—H12A | 109.5 |
C4—C5—H5B | 109.4 | C10—C12—H12B | 109.5 |
H5A—C5—H5B | 108.0 | H12A—C12—H12B | 109.5 |
C6—C1—C2 | 110.4 (3) | C10—C12—H12C | 109.5 |
C6—C1—H1A | 109.6 | H12A—C12—H12C | 109.5 |
C2—C1—H1A | 109.6 | H12B—C12—H12C | 109.5 |
C6—C1—H1B | 109.6 | C10—C11—H11A | 109.5 |
C2—C1—H1B | 109.6 | C10—C11—H11B | 109.5 |
H1A—C1—H1B | 108.1 | H11A—C11—H11B | 109.5 |
C15—C20—C19 | 112.1 (3) | C10—C11—H11C | 109.5 |
C15—C20—H20A | 109.2 | H11A—C11—H11C | 109.5 |
C19—C20—H20A | 109.2 | H11B—C11—H11C | 109.5 |
C15—C20—H20B | 109.2 | ||
C7—N2—C8—O1 | −179.8 (3) | C9—C13—C14—C15 | 75.8 (4) |
C7—N2—C8—C9 | 0.3 (5) | N1—C13—C14—C15 | −103.1 (3) |
C13—N1—C7—N2 | −1.4 (5) | C7—S1—C6—C1 | 74.8 (3) |
C13—N1—C7—S1 | 178.5 (2) | C7—S1—C6—C5 | −162.5 (3) |
C8—N2—C7—N1 | 1.0 (5) | C13—C14—C15—C20 | 73.0 (4) |
C8—N2—C7—S1 | −178.9 (2) | C13—C14—C15—C16 | −162.6 (3) |
C6—S1—C7—N1 | 4.1 (3) | C1—C6—C5—C4 | −53.9 (5) |
C6—S1—C7—N2 | −176.0 (2) | S1—C6—C5—C4 | −177.7 (3) |
C7—N1—C13—C9 | 0.4 (5) | C5—C6—C1—C2 | 55.9 (4) |
C7—N1—C13—C14 | 179.3 (3) | S1—C6—C1—C2 | 176.0 (3) |
N1—C13—C9—C8 | 0.9 (5) | C16—C15—C20—C19 | 54.5 (5) |
C14—C13—C9—C8 | −177.9 (3) | C14—C15—C20—C19 | 179.6 (3) |
N1—C13—C9—C10 | −176.4 (3) | C20—C15—C16—C17 | −55.8 (5) |
C14—C13—C9—C10 | 4.8 (5) | C14—C15—C16—C17 | 178.7 (3) |
O1—C8—C9—C13 | 179.0 (3) | C6—C1—C2—C3 | −58.1 (5) |
N2—C8—C9—C13 | −1.2 (5) | C6—C5—C4—C3 | 54.0 (5) |
O1—C8—C9—C10 | −3.6 (5) | C19—C18—C17—C16 | −53.6 (5) |
N2—C8—C9—C10 | 176.2 (3) | C15—C16—C17—C18 | 55.8 (5) |
C13—C9—C10—C11 | 112.6 (4) | C15—C20—C19—C18 | −53.5 (5) |
C8—C9—C10—C11 | −64.7 (4) | C17—C18—C19—C20 | 52.6 (5) |
C13—C9—C10—C12 | −121.1 (4) | C1—C2—C3—C4 | 57.6 (5) |
C8—C9—C10—C12 | 61.7 (5) | C5—C4—C3—C2 | −55.7 (5) |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2···O1i | 0.86 | 1.91 | 2.761 (4) | 170 |
C11—H11C···O1 | 0.96 | 2.53 | 3.115 (5) | 119 |
Symmetry code: (i) −x, −y, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C20H32N2OS |
Mr | 348.54 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 298 |
a, b, c (Å) | 9.9549 (16), 10.9542 (17), 12.1054 (19) |
α, β, γ (°) | 63.250 (2), 69.195 (2), 63.033 (2) |
V (Å3) | 1031.5 (3) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.17 |
Crystal size (mm) | 0.19 × 0.14 × 0.12 |
Data collection | |
Diffractometer | Bruker SMART CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 1998) |
Tmin, Tmax | 0.969, 0.980 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 9017, 4697, 2103 |
Rint | 0.047 |
(sin θ/λ)max (Å−1) | 0.666 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.065, 0.216, 0.88 |
No. of reflections | 4697 |
No. of parameters | 219 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.18, −0.20 |
Computer programs: SMART (Bruker, 1998), SAINT (Bruker, 1998), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2···O1i | 0.86 | 1.91 | 2.761 (4) | 169.6 |
C11—H11C···O1 | 0.96 | 2.53 | 3.115 (5) | 119.2 |
Symmetry code: (i) −x, −y, −z+1. |
Acknowledgements
This work was supported by a fund from the National Natural Science Foundation of China (grant No. 30560179).
References
Bruker (1998). SMART, SAINT and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
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Ettorre, A., Mai, A., Sbardella, G., Artico, M., La Colla, P. & Massa, S. (1998). Z. Kristallogr. New Cryst. Struct. 213, 593–595. CAS Google Scholar
He, Y. P., Chen, F. E., Yu, X. J., Wang, Y. P., de Clercq, E., Balzarini, J. & Pannecouque, C. (2004). Bioorg. Chem. 32, 536–548. Web of Science CrossRef PubMed CAS Google Scholar
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
As part of our ongoing investigation of S-DABO analogues which are a potent family of non-nucleoside reverse transcriptase inhibitors (NNRTIs), the title compound was synthesized as a novel inhibitor and shows favourable anti-HIV-1 activity.
The molecular structure is shown in Fig. 1. Both cyclohexane rings adopt the lowest energy chair conformation. C13—C14—C5 is 113.7 (3)°, which is in the range considered optimal for maximum activity of NNRTIs, viz. 110°–115° (Ettorre et al., 1996).
A comparision of the crystal structure of the title compound with some reported S-DABOs show that their spatial arrangement is similar (Ettorre et al., 1998; Rao et al., 2007). Although these molecules assume a similar conformation, they show differences in their activities. Thus, futher structural investigations are needed.
Intermolecular N—H···O hydrogen bonds link the molecules into dimers and stabilize the crystal structure of the compound. In addition, an intramolecular C—H···O hydrogen bond is observed.