metal-organic compounds
2,6-Diaminopyridinium bis(4-hydroxypyridine-2,6-dicarboxylato-κ3O2,N,O6)chromate(III) dihydrate
aFaculty of Chemistry, Tarbiat Moallem University, 49 Mofateh Avenue 15614, Tehran, Iran, bDepartment of Chemistry, Faculty of Science, University of Kurdistan, Sanandaj, Iran, and cFaculty of Chemistry, Islamic Azad University, North Tehran Branch, Tehran, Iran
*Correspondence e-mail: haghabozorg@yahoo.com
The reaction of chromium(III) nitrate hexahydrate, pyridine-2,6-diamine and 4-hydroxypyridine-2,6-dicarboxylic acid in a 1:2:2 molar ratio in aqueous solution resulted in the formation of the title compound, (C5H8N3)[Cr(C7H3NO5)2]·2H2O or (pydaH)[Cr(hypydc)2]·2H2O (where pyda is pyridine-2,6-diamine and hypydcH2 is 4-hydroxypyridine-2,6-dicarboxylic acid). Each CrIII atom is hexacoordinated by four O and two N atoms from two (hypydc)2− fragments, which act as tridentate ligands, in a distorted octahedral geometry. The O—Cr—O—C torsion angles between the two planes of the (hypydc)2− fragments [−99.81 (17) and 97.77 (17)°] indicate that these two units are almost perpendicular to one another. In the extensive O—H⋯O, N—H⋯O and C—H⋯O hydrogen bonds with D⋯A distances ranging from 2.560 (2) to 3.279 (3) Å, ion pairing, C—O⋯π [O⋯π = 3.166 (2) Å] and π–π stacking interactions between (hypydc)2− and (pydaH)+ rings [with a centroid–centroid distance of 3.3353 (14) Å] contribute to the formation of a three-dimensional supramolecular structure.
Related literature
For related literature, see: Aghabozorg et al., (2007); Aghabozorg, Manteghi et al. (2008); Aghabozorg, Saadaty et al. (2008); Ranjbar et al. (2001); Soleimannejad et al. (2008).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2005); cell SAINT (Bruker, 2005); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536808027347/ym2072sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536808027347/ym2072Isup2.hkl
An aqueous solution of CrCl3 (24 mg, 0.15 mmol), pyridine-2,6-diamine (32 mg, 0.3 mmol) and 4-Hydroxypyridine-2,6-dicarboxylic acid (54 mg, 0.3 mmol) was added to each other in a 1:2:2 molar ratio, and the reaction mixture was heated at about 50°C for 4 h. Violet crystals of the title compound were obtained from the solution after two weeks at room temperature.
The hydrogen atoms of NH2 and OH groups and also H atoms of water molecule were found in difference Fourier synthesis. The hydrogen atoms of the H(C) atom positions were calculated. All Hydrogen atoms were refined in isotropic approximation in riding model with the Uiso(H) parameters equal to 1.2 Ueq(Xi), where U(Xi) the equivalent thermal parameters of the carbon or nitrogen or oxygen atom to which corresponding H atom is bonded.
Data collection: APEX2 (Bruker, 2005); cell
SAINT (Bruker, 2005); data reduction: SAINT (Bruker, 2005); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. Molecular structure of (pydaH)[Cr(hypydc)2].2H2O, hydrogen bonds are shown as dashed lines and thermal ellipsoids are at 50% probability level. | |
Fig. 2. The π–πand C—O···π stacking interactions with the distances. | |
Fig. 3. Crystal packing of the title compound showing the three dimensional H-bonded framework. |
(C5H8N3)[Cr(C7H3NO5)2]·2H2O | F(000) = 1148 |
Mr = 560.38 | Dx = 1.718 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 1320 reflections |
a = 6.9590 (4) Å | θ = 3–28° |
b = 20.9904 (12) Å | µ = 0.61 mm−1 |
c = 14.8951 (8) Å | T = 100 K |
β = 95.3030 (13)° | Needle, black |
V = 2166.4 (2) Å3 | 0.32 × 0.08 × 0.07 mm |
Z = 4 |
Bruker APEXII CCD area-detector' diffractometer | 5229 independent reflections |
Radiation source: fine-focus sealed tube | 3694 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.078 |
ω scans | θmax = 28.0°, θmin = 1.7° |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | h = −9→9 |
Tmin = 0.829, Tmax = 0.959 | k = −27→27 |
24511 measured reflections | l = −19→19 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.042 | Hydrogen site location: mixed |
wR(F2) = 0.104 | H-atom parameters constrained |
S = 1.02 | w = 1/[σ2(Fo2) + (0.0468P)2 + 0.9675P] where P = (Fo2 + 2Fc2)/3 |
5229 reflections | (Δ/σ)max = 0.002 |
336 parameters | Δρmax = 0.47 e Å−3 |
0 restraints | Δρmin = −0.57 e Å−3 |
(C5H8N3)[Cr(C7H3NO5)2]·2H2O | V = 2166.4 (2) Å3 |
Mr = 560.38 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 6.9590 (4) Å | µ = 0.61 mm−1 |
b = 20.9904 (12) Å | T = 100 K |
c = 14.8951 (8) Å | 0.32 × 0.08 × 0.07 mm |
β = 95.3030 (13)° |
Bruker APEXII CCD area-detector' diffractometer | 5229 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | 3694 reflections with I > 2σ(I) |
Tmin = 0.829, Tmax = 0.959 | Rint = 0.078 |
24511 measured reflections |
R[F2 > 2σ(F2)] = 0.042 | 0 restraints |
wR(F2) = 0.104 | H-atom parameters constrained |
S = 1.02 | Δρmax = 0.47 e Å−3 |
5229 reflections | Δρmin = −0.57 e Å−3 |
336 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cr1 | 0.46263 (6) | 1.098248 (19) | 0.20578 (3) | 0.00992 (10) | |
O1 | 0.3226 (2) | 1.01686 (8) | 0.17083 (11) | 0.0124 (4) | |
O2 | 0.1871 (3) | 0.95887 (8) | 0.05618 (11) | 0.0141 (4) | |
O3 | 0.5836 (2) | 1.18207 (8) | 0.18501 (11) | 0.0127 (4) | |
O4 | 0.6584 (3) | 1.25241 (8) | 0.08081 (12) | 0.0154 (4) | |
O5 | 0.3766 (3) | 1.11140 (8) | −0.20081 (11) | 0.0166 (4) | |
H5O | 0.4037 | 1.1423 | −0.2284 | 0.020* | |
O6 | 0.7149 (2) | 1.05418 (8) | 0.23449 (11) | 0.0138 (4) | |
O7 | 0.9177 (3) | 1.01550 (9) | 0.34882 (12) | 0.0192 (4) | |
O8 | 0.2157 (2) | 1.14101 (8) | 0.23077 (11) | 0.0135 (4) | |
O9 | 0.0389 (3) | 1.17639 (9) | 0.33928 (12) | 0.0174 (4) | |
O10 | 0.5003 (3) | 1.09070 (9) | 0.61131 (11) | 0.0190 (4) | |
H10O | 0.6029 | 1.0846 | 0.6388 | 0.023* | |
O11 | 0.1788 (3) | 0.93417 (8) | 0.28815 (12) | 0.0159 (4) | |
H11D | 0.0901 | 0.9544 | 0.3071 | 0.019* | |
H11C | 0.2300 | 0.9525 | 0.2480 | 0.046 (11)* | |
O12 | 0.4442 (3) | 1.21870 (8) | −0.27326 (12) | 0.0170 (4) | |
H12A | 0.4497 | 1.2508 | −0.2418 | 0.020* | |
H12B | 0.3656 | 1.2273 | −0.3160 | 0.020* | |
N1 | 0.4410 (3) | 1.10250 (10) | 0.07265 (13) | 0.0106 (4) | |
N2 | 0.4719 (3) | 1.09238 (9) | 0.33828 (13) | 0.0105 (4) | |
N3 | −0.0320 (3) | 1.16527 (10) | −0.07279 (13) | 0.0117 (4) | |
H3NA | −0.0906 | 1.1294 | −0.0859 | 0.014* | |
N4 | −0.0433 (3) | 1.19284 (11) | −0.22368 (14) | 0.0178 (5) | |
H4NB | −0.0924 | 1.1563 | −0.2413 | 0.021* | |
H4NA | −0.0025 | 1.2175 | −0.2648 | 0.032 (9)* | |
N5 | −0.0454 (3) | 1.13054 (10) | 0.07407 (14) | 0.0135 (4) | |
H5NB | 0.0119 | 1.1350 | 0.1281 | 0.016* | |
H5NA | −0.0986 | 1.0961 | 0.0506 | 0.016* | |
C1 | 0.3476 (3) | 1.05598 (11) | 0.02427 (16) | 0.0101 (5) | |
C2 | 0.3233 (4) | 1.05809 (12) | −0.06822 (16) | 0.0117 (5) | |
H2A | 0.2573 | 1.0250 | −0.1019 | 0.014* | |
C3 | 0.3993 (3) | 1.11092 (11) | −0.11176 (16) | 0.0108 (5) | |
C4 | 0.4932 (3) | 1.15980 (12) | −0.05965 (16) | 0.0110 (5) | |
H4A | 0.5443 | 1.1959 | −0.0876 | 0.013* | |
C5 | 0.5088 (3) | 1.15376 (11) | 0.03232 (16) | 0.0108 (5) | |
C6 | 0.2781 (3) | 1.00555 (11) | 0.08605 (16) | 0.0105 (5) | |
C7 | 0.5931 (3) | 1.20100 (12) | 0.10225 (16) | 0.0111 (5) | |
C8 | 0.6272 (4) | 1.06604 (12) | 0.38294 (16) | 0.0123 (5) | |
C9 | 0.6455 (4) | 1.06333 (12) | 0.47589 (16) | 0.0122 (5) | |
H9A | 0.7555 | 1.0444 | 0.5078 | 0.015* | |
C10 | 0.4959 (4) | 1.08960 (11) | 0.52222 (16) | 0.0137 (5) | |
C11 | 0.3335 (4) | 1.11654 (12) | 0.47336 (17) | 0.0137 (5) | |
H11A | 0.2305 | 1.1339 | 0.5032 | 0.016* | |
C12 | 0.3287 (4) | 1.11698 (11) | 0.38087 (16) | 0.0117 (5) | |
C13 | 0.7689 (4) | 1.04231 (12) | 0.31917 (16) | 0.0128 (5) | |
C14 | 0.1782 (4) | 1.14746 (11) | 0.31450 (16) | 0.0118 (5) | |
C15 | 0.0192 (4) | 1.20629 (12) | −0.13776 (17) | 0.0132 (5) | |
C16 | 0.1308 (4) | 1.25899 (12) | −0.11129 (17) | 0.0149 (5) | |
H16A | 0.1713 | 1.2879 | −0.1549 | 0.018* | |
C17 | 0.1819 (4) | 1.26871 (12) | −0.02048 (17) | 0.0138 (5) | |
H17A | 0.2600 | 1.3044 | −0.0023 | 0.017* | |
C18 | 0.1230 (4) | 1.22815 (12) | 0.04490 (17) | 0.0135 (5) | |
H18A | 0.1551 | 1.2368 | 0.1071 | 0.016* | |
C19 | 0.0162 (4) | 1.17463 (12) | 0.01759 (16) | 0.0122 (5) |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cr1 | 0.0125 (2) | 0.0104 (2) | 0.00680 (19) | 0.00029 (16) | 0.00056 (14) | −0.00067 (15) |
O1 | 0.0170 (9) | 0.0115 (9) | 0.0083 (9) | −0.0017 (7) | 0.0000 (7) | 0.0004 (6) |
O2 | 0.0167 (9) | 0.0123 (9) | 0.0131 (9) | −0.0027 (7) | 0.0006 (7) | −0.0010 (7) |
O3 | 0.0161 (9) | 0.0135 (9) | 0.0084 (9) | −0.0023 (7) | 0.0003 (7) | −0.0013 (7) |
O4 | 0.0189 (10) | 0.0120 (9) | 0.0149 (10) | −0.0027 (8) | −0.0011 (7) | 0.0010 (7) |
O5 | 0.0284 (11) | 0.0143 (10) | 0.0068 (9) | −0.0023 (8) | 0.0011 (7) | 0.0021 (7) |
O6 | 0.0143 (9) | 0.0156 (9) | 0.0114 (9) | 0.0019 (7) | 0.0014 (7) | −0.0015 (7) |
O7 | 0.0170 (10) | 0.0241 (11) | 0.0161 (10) | 0.0082 (8) | −0.0007 (7) | −0.0006 (8) |
O8 | 0.0135 (9) | 0.0175 (9) | 0.0092 (9) | 0.0023 (7) | −0.0002 (7) | −0.0007 (7) |
O9 | 0.0177 (10) | 0.0214 (10) | 0.0134 (10) | 0.0071 (8) | 0.0029 (7) | −0.0001 (7) |
O10 | 0.0214 (10) | 0.0279 (11) | 0.0073 (9) | 0.0029 (8) | −0.0010 (7) | −0.0002 (7) |
O11 | 0.0169 (10) | 0.0181 (10) | 0.0136 (9) | 0.0020 (8) | 0.0052 (7) | 0.0022 (7) |
O12 | 0.0230 (10) | 0.0145 (9) | 0.0128 (9) | −0.0013 (8) | −0.0018 (7) | 0.0020 (7) |
N1 | 0.0102 (10) | 0.0101 (10) | 0.0117 (10) | 0.0019 (8) | 0.0014 (8) | −0.0019 (8) |
N2 | 0.0125 (10) | 0.0100 (10) | 0.0088 (10) | 0.0002 (8) | 0.0003 (8) | −0.0009 (8) |
N3 | 0.0133 (11) | 0.0102 (10) | 0.0118 (11) | −0.0008 (8) | 0.0018 (8) | 0.0010 (8) |
N4 | 0.0215 (12) | 0.0190 (12) | 0.0125 (11) | −0.0055 (10) | −0.0010 (9) | 0.0041 (9) |
N5 | 0.0147 (11) | 0.0158 (11) | 0.0097 (10) | −0.0018 (9) | −0.0007 (8) | −0.0002 (8) |
C1 | 0.0092 (12) | 0.0094 (12) | 0.0118 (12) | 0.0024 (9) | 0.0024 (9) | −0.0006 (9) |
C2 | 0.0116 (12) | 0.0098 (12) | 0.0132 (13) | 0.0025 (9) | −0.0008 (9) | −0.0012 (9) |
C3 | 0.0117 (12) | 0.0140 (13) | 0.0066 (11) | 0.0042 (10) | 0.0001 (9) | −0.0002 (9) |
C4 | 0.0102 (12) | 0.0115 (12) | 0.0114 (12) | 0.0030 (9) | 0.0018 (9) | 0.0018 (9) |
C5 | 0.0081 (12) | 0.0110 (12) | 0.0134 (13) | 0.0015 (9) | 0.0017 (9) | −0.0007 (9) |
C6 | 0.0103 (12) | 0.0116 (12) | 0.0099 (12) | 0.0025 (10) | 0.0030 (9) | 0.0002 (9) |
C7 | 0.0088 (12) | 0.0133 (12) | 0.0113 (12) | 0.0031 (10) | 0.0011 (9) | −0.0018 (9) |
C8 | 0.0129 (13) | 0.0105 (12) | 0.0134 (13) | −0.0018 (10) | −0.0002 (10) | −0.0004 (9) |
C9 | 0.0140 (13) | 0.0112 (12) | 0.0110 (12) | 0.0022 (10) | −0.0014 (9) | 0.0005 (9) |
C10 | 0.0201 (13) | 0.0110 (12) | 0.0098 (12) | −0.0014 (10) | 0.0008 (10) | 0.0015 (9) |
C11 | 0.0160 (13) | 0.0123 (12) | 0.0132 (13) | −0.0016 (10) | 0.0037 (10) | −0.0013 (9) |
C12 | 0.0122 (12) | 0.0100 (12) | 0.0124 (12) | −0.0020 (9) | −0.0011 (9) | −0.0021 (9) |
C13 | 0.0154 (13) | 0.0117 (12) | 0.0113 (12) | −0.0009 (10) | 0.0011 (10) | −0.0017 (9) |
C14 | 0.0145 (13) | 0.0109 (12) | 0.0098 (12) | −0.0008 (10) | 0.0005 (9) | 0.0003 (9) |
C15 | 0.0130 (13) | 0.0143 (13) | 0.0123 (13) | 0.0050 (10) | 0.0016 (10) | 0.0030 (9) |
C16 | 0.0150 (13) | 0.0125 (13) | 0.0173 (14) | 0.0019 (10) | 0.0030 (10) | 0.0039 (10) |
C17 | 0.0111 (12) | 0.0088 (12) | 0.0214 (14) | 0.0015 (10) | 0.0010 (10) | −0.0017 (10) |
C18 | 0.0120 (13) | 0.0130 (13) | 0.0154 (13) | 0.0014 (10) | 0.0000 (10) | −0.0025 (10) |
C19 | 0.0090 (12) | 0.0152 (13) | 0.0123 (13) | 0.0034 (10) | −0.0001 (9) | −0.0002 (9) |
Cr1—N2 | 1.973 (2) | N4—C15 | 1.343 (3) |
Cr1—N1 | 1.977 (2) | N4—H4NB | 0.8700 |
Cr1—O3 | 1.9872 (17) | N4—H4NA | 0.8700 |
Cr1—O6 | 1.9957 (18) | N5—C19 | 1.347 (3) |
Cr1—O8 | 2.0036 (17) | N5—H5NB | 0.8700 |
Cr1—O1 | 2.0111 (17) | N5—H5NA | 0.8701 |
O1—C6 | 1.294 (3) | C1—C2 | 1.373 (3) |
O2—C6 | 1.227 (3) | C1—C6 | 1.511 (3) |
O3—C7 | 1.303 (3) | C2—C3 | 1.412 (3) |
O4—C7 | 1.225 (3) | C2—H2A | 0.9500 |
O5—C3 | 1.321 (3) | C3—C4 | 1.410 (3) |
O5—H5O | 0.7999 | C4—C5 | 1.370 (3) |
O6—C13 | 1.306 (3) | C4—H4A | 0.9500 |
O7—C13 | 1.225 (3) | C5—C7 | 1.516 (3) |
O8—C14 | 1.305 (3) | C8—C9 | 1.380 (3) |
O9—C14 | 1.229 (3) | C8—C13 | 1.515 (3) |
O10—C10 | 1.325 (3) | C9—C10 | 1.413 (3) |
O10—H10O | 0.8000 | C9—H9A | 0.9500 |
O11—H11D | 0.8199 | C10—C11 | 1.405 (4) |
O11—H11C | 0.8201 | C11—C12 | 1.375 (3) |
O12—H12A | 0.8198 | C11—H11A | 0.9500 |
O12—H12B | 0.8201 | C12—C14 | 1.514 (3) |
N1—C5 | 1.339 (3) | C15—C16 | 1.388 (4) |
N1—C1 | 1.345 (3) | C16—C17 | 1.382 (4) |
N2—C12 | 1.334 (3) | C16—H16A | 0.9500 |
N2—C8 | 1.335 (3) | C17—C18 | 1.384 (4) |
N3—C15 | 1.367 (3) | C17—H17A | 0.9500 |
N3—C19 | 1.371 (3) | C18—C19 | 1.387 (3) |
N3—H3NA | 0.8701 | C18—H18A | 0.9500 |
N2—Cr1—N1 | 177.33 (9) | C5—C4—H4A | 120.9 |
N2—Cr1—O3 | 103.64 (8) | C3—C4—H4A | 120.9 |
N1—Cr1—O3 | 78.35 (8) | N1—C5—C4 | 121.6 (2) |
N2—Cr1—O6 | 79.04 (8) | N1—C5—C7 | 110.3 (2) |
N1—Cr1—O6 | 102.70 (8) | C4—C5—C7 | 128.0 (2) |
O3—Cr1—O6 | 93.82 (7) | O2—C6—O1 | 124.7 (2) |
N2—Cr1—O8 | 77.96 (8) | O2—C6—C1 | 121.4 (2) |
N1—Cr1—O8 | 100.31 (8) | O1—C6—C1 | 113.9 (2) |
O3—Cr1—O8 | 90.88 (7) | O4—C7—O3 | 124.6 (2) |
O6—Cr1—O8 | 156.99 (7) | O4—C7—C5 | 121.8 (2) |
N2—Cr1—O1 | 100.15 (8) | O3—C7—C5 | 113.6 (2) |
N1—Cr1—O1 | 77.79 (8) | N2—C8—C9 | 120.8 (2) |
O3—Cr1—O1 | 156.06 (7) | N2—C8—C13 | 111.6 (2) |
O6—Cr1—O1 | 93.28 (7) | C9—C8—C13 | 127.6 (2) |
O8—Cr1—O1 | 91.46 (7) | C8—C9—C10 | 118.0 (2) |
C6—O1—Cr1 | 118.37 (15) | C8—C9—H9A | 121.0 |
C7—O3—Cr1 | 118.46 (15) | C10—C9—H9A | 121.0 |
C3—O5—H5O | 120.7 | O10—C10—C11 | 117.1 (2) |
C13—O6—Cr1 | 117.65 (15) | O10—C10—C9 | 123.1 (2) |
C14—O8—Cr1 | 118.36 (15) | C11—C10—C9 | 119.8 (2) |
C10—O10—H10O | 116.5 | C12—C11—C10 | 117.7 (2) |
H11D—O11—H11C | 113.6 | C12—C11—H11A | 121.1 |
H12A—O12—H12B | 104.7 | C10—C11—H11A | 121.1 |
C5—N1—C1 | 121.1 (2) | N2—C12—C11 | 121.6 (2) |
C5—N1—Cr1 | 119.27 (16) | N2—C12—C14 | 110.8 (2) |
C1—N1—Cr1 | 119.54 (16) | C11—C12—C14 | 127.5 (2) |
C12—N2—C8 | 121.9 (2) | O7—C13—O6 | 126.4 (2) |
C12—N2—Cr1 | 119.67 (17) | O7—C13—C8 | 120.2 (2) |
C8—N2—Cr1 | 118.33 (16) | O6—C13—C8 | 113.4 (2) |
C15—N3—C19 | 123.3 (2) | O9—C14—O8 | 124.9 (2) |
C15—N3—H3NA | 122.3 | O9—C14—C12 | 122.0 (2) |
C19—N3—H3NA | 114.3 | O8—C14—C12 | 113.1 (2) |
C15—N4—H4NB | 123.8 | N4—C15—N3 | 117.4 (2) |
C15—N4—H4NA | 116.6 | N4—C15—C16 | 124.2 (2) |
H4NB—N4—H4NA | 117.1 | N3—C15—C16 | 118.5 (2) |
C19—N5—H5NB | 111.0 | C17—C16—C15 | 118.9 (2) |
C19—N5—H5NA | 117.8 | C17—C16—H16A | 120.6 |
H5NB—N5—H5NA | 127.1 | C15—C16—H16A | 120.6 |
N1—C1—C2 | 121.5 (2) | C16—C17—C18 | 122.1 (2) |
N1—C1—C6 | 110.4 (2) | C16—C17—H17A | 118.9 |
C2—C1—C6 | 128.1 (2) | C18—C17—H17A | 118.9 |
C1—C2—C3 | 118.0 (2) | C17—C18—C19 | 118.5 (2) |
C1—C2—H2A | 121.0 | C17—C18—H18A | 120.7 |
C3—C2—H2A | 121.0 | C19—C18—H18A | 120.7 |
O5—C3—C4 | 123.6 (2) | N5—C19—N3 | 116.8 (2) |
O5—C3—C2 | 116.9 (2) | N5—C19—C18 | 124.5 (2) |
C4—C3—C2 | 119.5 (2) | N3—C19—C18 | 118.7 (2) |
C5—C4—C3 | 118.2 (2) | ||
N2—Cr1—O1—C6 | 175.80 (17) | C3—C4—C5—C7 | −176.5 (2) |
N1—Cr1—O1—C6 | −2.46 (16) | Cr1—O1—C6—O2 | −177.36 (19) |
O3—Cr1—O1—C6 | 2.3 (3) | Cr1—O1—C6—C1 | 2.3 (3) |
O6—Cr1—O1—C6 | −104.75 (17) | N1—C1—C6—O2 | 179.2 (2) |
O8—Cr1—O1—C6 | 97.77 (17) | C2—C1—C6—O2 | −0.1 (4) |
N2—Cr1—O3—C7 | −177.73 (16) | N1—C1—C6—O1 | −0.5 (3) |
N1—Cr1—O3—C7 | 0.44 (17) | C2—C1—C6—O1 | −179.8 (2) |
O6—Cr1—O3—C7 | 102.64 (17) | Cr1—O3—C7—O4 | 177.52 (19) |
O8—Cr1—O3—C7 | −99.91 (17) | Cr1—O3—C7—C5 | −0.6 (3) |
O1—Cr1—O3—C7 | −4.3 (3) | N1—C5—C7—O4 | −177.7 (2) |
N2—Cr1—O6—C13 | −0.10 (17) | C4—C5—C7—O4 | 0.4 (4) |
N1—Cr1—O6—C13 | −178.02 (17) | N1—C5—C7—O3 | 0.5 (3) |
O3—Cr1—O6—C13 | 103.07 (17) | C4—C5—C7—O3 | 178.6 (2) |
O8—Cr1—O6—C13 | 1.7 (3) | C12—N2—C8—C9 | −0.1 (4) |
O1—Cr1—O6—C13 | −99.81 (17) | Cr1—N2—C8—C9 | 176.98 (18) |
N2—Cr1—O8—C14 | 2.31 (17) | C12—N2—C8—C13 | −179.5 (2) |
N1—Cr1—O8—C14 | −179.77 (17) | Cr1—N2—C8—C13 | −2.4 (3) |
O3—Cr1—O8—C14 | −101.46 (17) | N2—C8—C9—C10 | −0.4 (4) |
O6—Cr1—O8—C14 | 0.5 (3) | C13—C8—C9—C10 | 178.9 (2) |
O1—Cr1—O8—C14 | 102.37 (17) | C8—C9—C10—O10 | −178.7 (2) |
O3—Cr1—N1—C5 | −0.11 (17) | C8—C9—C10—C11 | 0.9 (4) |
O6—Cr1—N1—C5 | −91.45 (18) | O10—C10—C11—C12 | 178.6 (2) |
O8—Cr1—N1—C5 | 88.65 (18) | C9—C10—C11—C12 | −1.0 (4) |
O1—Cr1—N1—C5 | 177.91 (19) | C8—N2—C12—C11 | 0.0 (4) |
O3—Cr1—N1—C1 | −175.84 (19) | Cr1—N2—C12—C11 | −176.99 (18) |
O6—Cr1—N1—C1 | 92.83 (18) | C8—N2—C12—C14 | 176.2 (2) |
O8—Cr1—N1—C1 | −87.08 (18) | Cr1—N2—C12—C14 | −0.8 (3) |
O1—Cr1—N1—C1 | 2.18 (17) | C10—C11—C12—N2 | 0.5 (4) |
O3—Cr1—N2—C12 | 87.31 (19) | C10—C11—C12—C14 | −175.0 (2) |
O6—Cr1—N2—C12 | 178.62 (19) | Cr1—O6—C13—O7 | 179.5 (2) |
O8—Cr1—N2—C12 | −0.64 (18) | Cr1—O6—C13—C8 | −1.1 (3) |
O1—Cr1—N2—C12 | −89.97 (19) | N2—C8—C13—O7 | −178.4 (2) |
O3—Cr1—N2—C8 | −89.81 (18) | C9—C8—C13—O7 | 2.3 (4) |
O6—Cr1—N2—C8 | 1.50 (18) | N2—C8—C13—O6 | 2.2 (3) |
O8—Cr1—N2—C8 | −177.77 (19) | C9—C8—C13—O6 | −177.1 (2) |
O1—Cr1—N2—C8 | 92.91 (18) | Cr1—O8—C14—O9 | 174.9 (2) |
C5—N1—C1—C2 | 2.1 (3) | Cr1—O8—C14—C12 | −3.3 (3) |
Cr1—N1—C1—C2 | 177.73 (18) | N2—C12—C14—O9 | −175.7 (2) |
C5—N1—C1—C6 | −177.3 (2) | C11—C12—C14—O9 | 0.2 (4) |
Cr1—N1—C1—C6 | −1.6 (3) | N2—C12—C14—O8 | 2.6 (3) |
N1—C1—C2—C3 | −0.1 (3) | C11—C12—C14—O8 | 178.5 (2) |
C6—C1—C2—C3 | 179.1 (2) | C19—N3—C15—N4 | −177.6 (2) |
C1—C2—C3—O5 | 179.0 (2) | C19—N3—C15—C16 | 2.1 (4) |
C1—C2—C3—C4 | −1.2 (3) | N4—C15—C16—C17 | 178.2 (2) |
O5—C3—C4—C5 | −179.6 (2) | N3—C15—C16—C17 | −1.5 (4) |
C2—C3—C4—C5 | 0.6 (3) | C15—C16—C17—C18 | −1.0 (4) |
C1—N1—C5—C4 | −2.7 (3) | C16—C17—C18—C19 | 2.8 (4) |
Cr1—N1—C5—C4 | −178.40 (18) | C15—N3—C19—N5 | 179.4 (2) |
C1—N1—C5—C7 | 175.5 (2) | C15—N3—C19—C18 | −0.3 (4) |
Cr1—N1—C5—C7 | −0.2 (3) | C17—C18—C19—N5 | 178.2 (2) |
C3—C4—C5—N1 | 1.4 (4) | C17—C18—C19—N3 | −2.1 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
N3—H3NA···O2i | 0.87 | 2.03 | 2.840 (3) | 154 |
N4—H4NB···O11i | 0.87 | 2.09 | 2.958 (3) | 173 |
N4—H4NA···O3ii | 0.87 | 2.33 | 3.122 (3) | 151 |
N5—H5NB···O8 | 0.87 | 1.99 | 2.831 (3) | 162 |
N5—H5NA···O2i | 0.87 | 2.01 | 2.812 (3) | 152 |
O5—H5O···O12 | 0.80 | 1.77 | 2.560 (2) | 169 |
O10—H10O···O11iii | 0.80 | 1.83 | 2.624 (3) | 173 |
O11—H11C···O1 | 0.82 | 1.92 | 2.719 (2) | 163 |
O11—H11D···O7iv | 0.82 | 1.90 | 2.709 (3) | 169 |
O12—H12A···O9v | 0.82 | 2.01 | 2.809 (3) | 165 |
O12—H12B···O4ii | 0.82 | 2.05 | 2.872 (3) | 177 |
C16—H16A···O3ii | 0.95 | 2.49 | 3.265 (3) | 139 |
C18—H18A···O12vi | 0.95 | 2.59 | 3.279 (3) | 130 |
Symmetry codes: (i) −x, −y+2, −z; (ii) x−1/2, −y+5/2, z−1/2; (iii) −x+1, −y+2, −z+1; (iv) x−1, y, z; (v) x+1/2, −y+5/2, z−1/2; (vi) x−1/2, −y+5/2, z+1/2. |
Experimental details
Crystal data | |
Chemical formula | (C5H8N3)[Cr(C7H3NO5)2]·2H2O |
Mr | 560.38 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 100 |
a, b, c (Å) | 6.9590 (4), 20.9904 (12), 14.8951 (8) |
β (°) | 95.3030 (13) |
V (Å3) | 2166.4 (2) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.61 |
Crystal size (mm) | 0.32 × 0.08 × 0.07 |
Data collection | |
Diffractometer | Bruker APEXII CCD area-detector' diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2005) |
Tmin, Tmax | 0.829, 0.959 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 24511, 5229, 3694 |
Rint | 0.078 |
(sin θ/λ)max (Å−1) | 0.661 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.042, 0.104, 1.02 |
No. of reflections | 5229 |
No. of parameters | 336 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.47, −0.57 |
Computer programs: APEX2 (Bruker, 2005), SAINT (Bruker, 2005), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
N3—H3NA···O2i | 0.87 | 2.03 | 2.840 (3) | 154 |
N4—H4NB···O11i | 0.87 | 2.09 | 2.958 (3) | 173 |
N4—H4NA···O3ii | 0.87 | 2.33 | 3.122 (3) | 151 |
N5—H5NB···O8 | 0.87 | 1.99 | 2.831 (3) | 162 |
N5—H5NA···O2i | 0.87 | 2.01 | 2.812 (3) | 152 |
O5—H5O···O12 | 0.80 | 1.77 | 2.560 (2) | 169 |
O10—H10O···O11iii | 0.80 | 1.83 | 2.624 (3) | 173 |
O11—H11C···O1 | 0.82 | 1.92 | 2.719 (2) | 163 |
O11—H11D···O7iv | 0.82 | 1.90 | 2.709 (3) | 169 |
O12—H12A···O9v | 0.82 | 2.01 | 2.809 (3) | 165 |
O12—H12B···O4ii | 0.82 | 2.05 | 2.872 (3) | 177 |
C16—H16A···O3ii | 0.95 | 2.49 | 3.265 (3) | 139 |
C18—H18A···O12vi | 0.95 | 2.59 | 3.279 (3) | 130 |
Symmetry codes: (i) −x, −y+2, −z; (ii) x−1/2, −y+5/2, z−1/2; (iii) −x+1, −y+2, −z+1; (iv) x−1, y, z; (v) x+1/2, −y+5/2, z−1/2; (vi) x−1/2, −y+5/2, z+1/2. |
References
Aghabozorg, H., Ghadermazi, M., Soleimannejad, J. & Sheshmani, S. (2007). Acta Cryst. E63, m1917–m1918. Web of Science CSD CrossRef IUCr Journals Google Scholar
Aghabozorg, H., Manteghi, F. & Sheshmani, S. (2008). J. Iran. Chem. Soc. 5, 184–227. CrossRef CAS Google Scholar
Aghabozorg, H., Saadaty, S., Motyeian, E., Ghadermazi, M. & Manteghi, F. (2008). Acta Cryst. E64, m466–m467. Web of Science CSD CrossRef IUCr Journals Google Scholar
Bruker (2005). APEX2, SAINT and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Ranjbar, M., Aghabozorg, H., Moghimi, A. & Yanovsky, A. (2001). Z. Kristallogr. New Cryst. Struct. 216, 626–628. CAS Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Soleimannejad, J., Aghabozorg, H. & Hooshmand, S. (2008). Acta Cryst. E64, m564–m565. Web of Science CSD CrossRef IUCr Journals Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The molecular structure of the title compound is shown in Fig. 1. Hydrogen bond geometries are given in Table 1. According to the crystal structure, the title compound is composed of an anionic complex, [Cr(hypydc)2]-, protonated diamino-2,6-pyridinium as a counter ion, (pydaH)+, and two uncoordinated water molecules. This compound crystallizes in the monoclinic system, space group P21/n with four molecules in the unit cell.
The CrIII atom is six-coordinated by two 4-hydroxypyridine-2,6-dicarboxylate, (hypydc)2-, groups which act as tridentate ligand through one pyridine N atom and two carboxylate O atoms. N1 and N2 atoms of two (hypydc)2- fragments occupy the axial position, while O1, O3, O6 and O8 atoms form the equatorial plane. The N1—Cr1—N2 angle [177.33 (9)°] deviates slightly from linearity. Therefore, the coordination geometry around CrIII can be described as distorted octahedral. The bond angles O6—Cr1—O1, O3—Cr1—O6, O3—Cr1—O8 and O1—Cr1—O8 (93.28 (7)°, 93.82 (7)°, 90.88 (7)° and 91.46 (7)°, respectively), and the O1—Cr1—O6—C13 and O8—Cr1—O1—C6 torsion angles (-99.81 (17)° and (97.77 (17)°, respectively) show that these two (hypydc)2- groups are almost perpendicular. Furthermore, the bond angles O1—Cr1—O3 [156.06 (7)°] and O6—Cr1—O8 [156.99 (7)°] indicate that four carboxylate groups of the two dianions are in a flattened tetrahedral arrangement around the CrIII atom.
In the crystal structure of (pydaH)[Cr(hypydc)2].2H2O, the spaces between to layers of [Cr(hypydc)2]- anions are filled with (pydaH)+ cations and water molecules. There are also π-π stacking interactions between the aromatic ring of the coordinated (hypydc)2– anion and the aromatic ring of the (pydaH)+ cation with distances of 3.3353 (14) Å for Cg1···Cg2. There are also C—O···π stacking interactions between C6–O2 and Cg1 with O···π distance of 3.166 (2) Å (1 - x, 2 - y, -z) [Cg1 and Cg2 are the centroid for (N1/C1—C5) and (N3/C15—C19) rings, respectively] (Fig. 2).
Intermolecular O—H···O, N—H···O and C—H···O hydrogen bonding with D···A ranging from 2.560 (2) to 3.279 (3) Å, ionpairing, π–π and C—O···π stacking interactions seem to be effective in the stabilization of the crystal structure, resulting in the formation of an interesting supramolecular structure (Fig. 3).