metal-organic compounds
trans-Diaquabis[5-carboxy-2-(3-pyridyl)-1H-imidazole-4-carboxylato-κ2N3,O4]manganese(II)
aOrdered Matter Science Research Center, College of Chemistry and Chemical Engineering, Southeast University, Nanjing 210096, People's Republic of China
*Correspondence e-mail: clz1977@sina.com
In the title compound, [Mn(C10H6N3O4)2(H2O)2], synthesized by hydrothermal reaction, the MnII ion lies on an inversion centre and displays a distorted octahedral coordination geometry defined by the two imidazole N atoms and two carboxylate O atoms of the two trans-standing chelate ligands, and two O atoms of the water molecules. A two-dimensional supramolecular architecture is formed via N—H⋯O, O—H⋯N and O—H⋯O hydrogen-bonding interactions.
Related literature
For the chemistry of imidazoles, see: Xiao et al. (2004); Zhang et al. (2004); Lu et al. (2006).
Experimental
Crystal data
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Refinement
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Data collection: CrystalClear (Rigaku, 2005); cell CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536808029073/bx2177sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536808029073/bx2177Isup2.hkl
A mixture of 2-Pyridin-3-yl-1H-imidazole-4,5-dicarboxylic acid (0.1 mmol, 23 mg) and MnCl2 (20 mg, 0.1 mmol) and water (1 ml) sealed in a glass tube was maintained at 100°C for 3 d then cooled to room temperature to obtain suitable single crystals for X-ray analysis.
All H atoms attached to C atoms, O atoms and N atoms except H5B were fixed geometrically and treated as riding with C—H = 0.93 Å (aromatic), O—H = 0.82 Å and N—H = 0.86 Å with Uiso(H) = 1.2Ueq(C and N) or Uiso(H) = 1.5Ueq(O). H5B atom of H2O were located in difference Fourier maps.
Data collection: CrystalClear (Rigaku, 2005); cell
CrystalClear (Rigaku, 2005); data reduction: CrystalClear (Rigaku, 2005); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).[Mn(C10H6N3O4)2(H2O)2] | Z = 1 |
Mr = 555.33 | F(000) = 283 |
Triclinic, P1 | Dx = 1.745 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 6.9574 (7) Å | Cell parameters from 1463 reflections |
b = 8.5636 (7) Å | θ = 3.1–27.5° |
c = 9.4409 (16) Å | µ = 0.70 mm−1 |
α = 81.90 (3)° | T = 298 K |
β = 83.42 (4)° | Block, colourless |
γ = 72.10 (2)° | 0.25 × 0.20 × 0.20 mm |
V = 528.41 (11) Å3 |
Rigaku Mercury2 diffractometer | 2378 independent reflections |
Radiation source: fine-focus sealed tube | 1871 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.029 |
Detector resolution: 13.6612 pixels mm-1 | θmax = 27.5°, θmin = 2.5° |
ω scans | h = −8→8 |
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005) | k = −11→11 |
Tmin = 0.845, Tmax = 0.869 | l = −12→12 |
5416 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.047 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.165 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.11 | w = 1/[σ2(Fo2) + (0.1003P)2 + 0.0122P] where P = (Fo2 + 2Fc2)/3 |
2378 reflections | (Δ/σ)max < 0.001 |
175 parameters | Δρmax = 0.54 e Å−3 |
2 restraints | Δρmin = −0.44 e Å−3 |
[Mn(C10H6N3O4)2(H2O)2] | γ = 72.10 (2)° |
Mr = 555.33 | V = 528.41 (11) Å3 |
Triclinic, P1 | Z = 1 |
a = 6.9574 (7) Å | Mo Kα radiation |
b = 8.5636 (7) Å | µ = 0.70 mm−1 |
c = 9.4409 (16) Å | T = 298 K |
α = 81.90 (3)° | 0.25 × 0.20 × 0.20 mm |
β = 83.42 (4)° |
Rigaku Mercury2 diffractometer | 2378 independent reflections |
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005) | 1871 reflections with I > 2σ(I) |
Tmin = 0.845, Tmax = 0.869 | Rint = 0.029 |
5416 measured reflections |
R[F2 > 2σ(F2)] = 0.047 | 2 restraints |
wR(F2) = 0.165 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.11 | Δρmax = 0.54 e Å−3 |
2378 reflections | Δρmin = −0.44 e Å−3 |
175 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Mn1 | 0.5000 | 0.5000 | 0.0000 | 0.0299 (2) | |
C1 | 0.3266 (4) | 0.8677 (4) | −0.0160 (3) | 0.0290 (6) | |
C2 | 0.2634 (4) | 0.8148 (3) | 0.1332 (3) | 0.0253 (6) | |
C3 | 0.1577 (4) | 0.9082 (3) | 0.2405 (3) | 0.0260 (6) | |
C4 | 0.0487 (5) | 1.0861 (4) | 0.2425 (3) | 0.0308 (6) | |
C5 | 0.2472 (4) | 0.6428 (3) | 0.3206 (3) | 0.0229 (5) | |
C6 | 0.2698 (4) | 0.4926 (3) | 0.4203 (3) | 0.0253 (6) | |
C7 | 0.3049 (5) | 0.3401 (4) | 0.3713 (3) | 0.0336 (7) | |
H7A | 0.3120 | 0.3314 | 0.2737 | 0.040* | |
C8 | 0.3291 (5) | 0.2013 (4) | 0.4703 (3) | 0.0369 (7) | |
H8A | 0.3592 | 0.0972 | 0.4399 | 0.044* | |
C9 | 0.3080 (5) | 0.2195 (4) | 0.6156 (3) | 0.0345 (7) | |
H9A | 0.3215 | 0.1261 | 0.6817 | 0.041* | |
N3 | 0.2692 (4) | 0.3661 (3) | 0.6640 (3) | 0.0332 (6) | |
C11 | 0.2491 (5) | 0.4986 (4) | 0.5688 (3) | 0.0300 (6) | |
H11A | 0.2196 | 0.6010 | 0.6025 | 0.036* | |
N1 | 0.3172 (3) | 0.6504 (3) | 0.1834 (2) | 0.0255 (5) | |
N2 | 0.1531 (4) | 0.7971 (3) | 0.3573 (2) | 0.0269 (5) | |
H2A | 0.0992 | 0.8207 | 0.4412 | 0.032* | |
O1 | 0.4330 (4) | 0.7595 (3) | −0.0912 (2) | 0.0380 (5) | |
O2 | 0.2722 (4) | 1.0220 (3) | −0.0599 (2) | 0.0408 (6) | |
O3 | 0.0641 (4) | 1.1816 (3) | 0.1292 (2) | 0.0397 (6) | |
H3 | 0.1602 | 1.1348 | 0.0764 | 0.060* | |
O4 | −0.0526 (4) | 1.1310 (3) | 0.3540 (2) | 0.0457 (6) | |
O5 | 0.7793 (4) | 0.5087 (3) | 0.0738 (2) | 0.0414 (6) | |
H5 | 0.7544 | 0.5539 | 0.1476 | 0.062* | |
H5B | 0.867 (5) | 0.416 (3) | 0.083 (3) | 0.042 (10)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Mn1 | 0.0369 (4) | 0.0247 (4) | 0.0204 (3) | 0.0026 (3) | 0.0007 (3) | −0.0056 (2) |
C1 | 0.0337 (15) | 0.0254 (14) | 0.0204 (13) | 0.0004 (11) | 0.0015 (11) | −0.0017 (10) |
C2 | 0.0307 (14) | 0.0207 (13) | 0.0197 (13) | −0.0006 (10) | −0.0005 (11) | −0.0035 (10) |
C3 | 0.0315 (14) | 0.0231 (14) | 0.0205 (12) | −0.0040 (11) | 0.0015 (11) | −0.0049 (10) |
C4 | 0.0366 (16) | 0.0242 (14) | 0.0257 (14) | 0.0005 (12) | −0.0005 (12) | −0.0061 (11) |
C5 | 0.0233 (13) | 0.0235 (13) | 0.0184 (12) | −0.0021 (10) | 0.0020 (10) | −0.0047 (9) |
C6 | 0.0270 (13) | 0.0265 (14) | 0.0208 (13) | −0.0063 (11) | 0.0028 (11) | −0.0041 (10) |
C7 | 0.0455 (17) | 0.0288 (15) | 0.0212 (14) | −0.0052 (13) | 0.0077 (13) | −0.0064 (11) |
C8 | 0.0493 (19) | 0.0225 (14) | 0.0336 (16) | −0.0033 (12) | −0.0003 (14) | −0.0048 (11) |
C9 | 0.0404 (17) | 0.0279 (15) | 0.0303 (16) | −0.0074 (13) | 0.0003 (13) | 0.0039 (12) |
N3 | 0.0419 (15) | 0.0327 (13) | 0.0209 (12) | −0.0075 (11) | 0.0023 (10) | −0.0012 (9) |
C11 | 0.0388 (16) | 0.0271 (14) | 0.0226 (14) | −0.0065 (12) | −0.0030 (12) | −0.0041 (11) |
N1 | 0.0310 (12) | 0.0214 (11) | 0.0200 (11) | −0.0021 (9) | −0.0007 (10) | −0.0028 (9) |
N2 | 0.0334 (12) | 0.0246 (12) | 0.0185 (11) | −0.0032 (10) | 0.0038 (9) | −0.0058 (8) |
O1 | 0.0503 (14) | 0.0304 (11) | 0.0210 (10) | 0.0023 (10) | 0.0077 (9) | −0.0028 (8) |
O2 | 0.0578 (14) | 0.0251 (11) | 0.0257 (11) | 0.0011 (10) | 0.0082 (10) | 0.0035 (8) |
O3 | 0.0508 (14) | 0.0229 (11) | 0.0330 (12) | 0.0038 (9) | 0.0059 (10) | −0.0031 (8) |
O4 | 0.0650 (16) | 0.0303 (12) | 0.0291 (12) | 0.0059 (11) | 0.0040 (11) | −0.0123 (9) |
O5 | 0.0423 (13) | 0.0434 (14) | 0.0309 (12) | 0.0012 (11) | −0.0015 (10) | −0.0119 (10) |
Mn1—O5i | 2.163 (2) | C5—N2 | 1.356 (3) |
Mn1—O5 | 2.163 (2) | C5—C6 | 1.460 (4) |
Mn1—O1i | 2.194 (2) | C6—C7 | 1.389 (4) |
Mn1—O1 | 2.194 (2) | C6—C11 | 1.399 (4) |
Mn1—N1i | 2.322 (2) | C7—C8 | 1.383 (4) |
Mn1—N1 | 2.322 (2) | C7—H7A | 0.9300 |
C1—O1 | 1.246 (3) | C8—C9 | 1.388 (4) |
C1—O2 | 1.279 (3) | C8—H8A | 0.9300 |
C1—C2 | 1.477 (4) | C9—N3 | 1.335 (4) |
C2—N1 | 1.370 (3) | C9—H9A | 0.9300 |
C2—C3 | 1.380 (4) | N3—C11 | 1.326 (4) |
C3—N2 | 1.355 (3) | C11—H11A | 0.9300 |
C3—C4 | 1.480 (4) | N2—H2A | 0.8600 |
C4—O4 | 1.238 (3) | O3—H3 | 0.8200 |
C4—O3 | 1.267 (4) | O5—H5 | 0.8200 |
C5—N1 | 1.331 (3) | O5—H5B | 0.839 (17) |
O5i—Mn1—O5 | 180.00 (11) | N2—C5—C6 | 123.9 (2) |
O5i—Mn1—O1i | 90.51 (10) | C7—C6—C11 | 117.7 (3) |
O5—Mn1—O1i | 89.49 (10) | C7—C6—C5 | 121.3 (2) |
O5i—Mn1—O1 | 89.49 (10) | C11—C6—C5 | 121.0 (2) |
O5—Mn1—O1 | 90.51 (10) | C8—C7—C6 | 118.9 (3) |
O1i—Mn1—O1 | 180.0 | C8—C7—H7A | 120.6 |
O5i—Mn1—N1i | 90.00 (8) | C6—C7—H7A | 120.6 |
O5—Mn1—N1i | 90.00 (8) | C7—C8—C9 | 119.2 (3) |
O1i—Mn1—N1i | 74.86 (8) | C7—C8—H8A | 120.4 |
O1—Mn1—N1i | 105.14 (8) | C9—C8—H8A | 120.4 |
O5i—Mn1—N1 | 90.00 (8) | N3—C9—C8 | 122.5 (3) |
O5—Mn1—N1 | 90.00 (8) | N3—C9—H9A | 118.8 |
O1i—Mn1—N1 | 105.14 (8) | C8—C9—H9A | 118.8 |
O1—Mn1—N1 | 74.86 (8) | C11—N3—C9 | 118.2 (3) |
N1i—Mn1—N1 | 180.0 | N3—C11—C6 | 123.5 (3) |
O1—C1—O2 | 123.7 (3) | N3—C11—H11A | 118.2 |
O1—C1—C2 | 118.1 (3) | C6—C11—H11A | 118.2 |
O2—C1—C2 | 118.2 (3) | C5—N1—C2 | 105.7 (2) |
N1—C2—C3 | 110.3 (2) | C5—N1—Mn1 | 145.47 (18) |
N1—C2—C1 | 119.8 (2) | C2—N1—Mn1 | 108.75 (16) |
C3—C2—C1 | 129.9 (3) | C3—N2—C5 | 109.1 (2) |
N2—C3—C2 | 104.8 (2) | C3—N2—H2A | 125.5 |
N2—C3—C4 | 121.9 (2) | C5—N2—H2A | 125.5 |
C2—C3—C4 | 133.1 (3) | C1—O1—Mn1 | 118.36 (18) |
O4—C4—O3 | 124.5 (3) | C4—O3—H3 | 109.5 |
O4—C4—C3 | 117.8 (3) | Mn1—O5—H5 | 109.5 |
O3—C4—C3 | 117.7 (2) | Mn1—O5—H5B | 113 (2) |
N1—C5—N2 | 110.0 (2) | H5—O5—H5B | 112.4 |
N1—C5—C6 | 126.0 (2) | ||
O1—C1—C2—N1 | −1.9 (4) | C6—C5—N1—C2 | −179.2 (3) |
O2—C1—C2—N1 | 179.4 (3) | N2—C5—N1—Mn1 | 176.6 (2) |
O1—C1—C2—C3 | 175.6 (3) | C6—C5—N1—Mn1 | −2.2 (5) |
O2—C1—C2—C3 | −3.1 (5) | C3—C2—N1—C5 | −0.6 (3) |
N1—C2—C3—N2 | 1.4 (3) | C1—C2—N1—C5 | 177.3 (3) |
C1—C2—C3—N2 | −176.2 (3) | C3—C2—N1—Mn1 | −178.84 (19) |
N1—C2—C3—C4 | −173.1 (3) | C1—C2—N1—Mn1 | −0.9 (3) |
C1—C2—C3—C4 | 9.3 (6) | O5i—Mn1—N1—C5 | 95.6 (3) |
N2—C3—C4—O4 | −1.9 (5) | O5—Mn1—N1—C5 | −84.4 (3) |
C2—C3—C4—O4 | 171.9 (3) | O1i—Mn1—N1—C5 | 5.0 (4) |
N2—C3—C4—O3 | 178.8 (3) | O1—Mn1—N1—C5 | −175.0 (4) |
C2—C3—C4—O3 | −7.4 (5) | O5i—Mn1—N1—C2 | −87.49 (19) |
N1—C5—C6—C7 | −22.7 (4) | O5—Mn1—N1—C2 | 92.51 (19) |
N2—C5—C6—C7 | 158.6 (3) | O1i—Mn1—N1—C2 | −178.01 (18) |
N1—C5—C6—C11 | 159.7 (3) | O1—Mn1—N1—C2 | 1.99 (18) |
N2—C5—C6—C11 | −18.9 (4) | C2—C3—N2—C5 | −1.7 (3) |
C11—C6—C7—C8 | −3.7 (4) | C4—C3—N2—C5 | 173.6 (3) |
C5—C6—C7—C8 | 178.7 (3) | N1—C5—N2—C3 | 1.4 (3) |
C6—C7—C8—C9 | 3.1 (5) | C6—C5—N2—C3 | −179.8 (2) |
C7—C8—C9—N3 | −1.4 (5) | O2—C1—O1—Mn1 | −177.4 (2) |
C8—C9—N3—C11 | 0.4 (5) | C2—C1—O1—Mn1 | 3.9 (4) |
C9—N3—C11—C6 | −1.1 (5) | O5i—Mn1—O1—C1 | 86.8 (2) |
C7—C6—C11—N3 | 2.8 (4) | O5—Mn1—O1—C1 | −93.2 (2) |
C5—C6—C11—N3 | −179.6 (3) | N1i—Mn1—O1—C1 | 176.7 (2) |
N2—C5—N1—C2 | −0.4 (3) | N1—Mn1—O1—C1 | −3.3 (2) |
Symmetry code: (i) −x+1, −y+1, −z. |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2A···O4ii | 0.86 | 2.00 | 2.840 (3) | 164 |
O5—H5···N3iii | 0.82 | 1.97 | 2.779 (3) | 171 |
O5—H5B···O3iv | 0.84 (2) | 2.07 (2) | 2.908 (3) | 173 (3) |
O3—H3···O2 | 0.82 | 1.69 | 2.456 (3) | 155 |
Symmetry codes: (ii) −x, −y+2, −z+1; (iii) −x+1, −y+1, −z+1; (iv) x+1, y−1, z. |
Experimental details
Crystal data | |
Chemical formula | [Mn(C10H6N3O4)2(H2O)2] |
Mr | 555.33 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 298 |
a, b, c (Å) | 6.9574 (7), 8.5636 (7), 9.4409 (16) |
α, β, γ (°) | 81.90 (3), 83.42 (4), 72.10 (2) |
V (Å3) | 528.41 (11) |
Z | 1 |
Radiation type | Mo Kα |
µ (mm−1) | 0.70 |
Crystal size (mm) | 0.25 × 0.20 × 0.20 |
Data collection | |
Diffractometer | Rigaku Mercury2 diffractometer |
Absorption correction | Multi-scan (CrystalClear; Rigaku, 2005) |
Tmin, Tmax | 0.845, 0.869 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 5416, 2378, 1871 |
Rint | 0.029 |
(sin θ/λ)max (Å−1) | 0.649 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.047, 0.165, 1.11 |
No. of reflections | 2378 |
No. of parameters | 175 |
No. of restraints | 2 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.54, −0.44 |
Computer programs: CrystalClear (Rigaku, 2005), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2A···O4i | 0.86 | 2.00 | 2.840 (3) | 164.2 |
O5—H5···N3ii | 0.82 | 1.97 | 2.779 (3) | 171.0 |
O5—H5B···O3iii | 0.839 (17) | 2.074 (18) | 2.908 (3) | 173 (3) |
O3—H3···O2 | 0.82 | 1.69 | 2.456 (3) | 154.8 |
Symmetry codes: (i) −x, −y+2, −z+1; (ii) −x+1, −y+1, −z+1; (iii) x+1, y−1, z. |
Acknowledgements
This work was supported by a start-up grant from Southeast University to Professor Ren-Gen Xiong.
References
Lu, W.-G., Su, C.-Y., Lu, T.-B., Jiang, L. & Chen, J.-M. (2006). J. Am. Chem. Soc. 128, 34–35. Web of Science CSD CrossRef PubMed CAS Google Scholar
Rigaku (2005). CrystalClear. Rigaku Corporation, Tokyo, Japan. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Xiao, H.-P., Li, X.-H. & Shi, Q. (2004). Acta Cryst. E60, m1519–m1521. Web of Science CSD CrossRef IUCr Journals Google Scholar
Zhang, X.-M., Fang, R.-Q., Wu, H.-S. & Ng, S. W. (2004). Acta Cryst. E60, m12–m13. Web of Science CSD CrossRef IUCr Journals Google Scholar
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N-Heterocyclic carboxylic acids, such as imidazole-4,5-dicarboxylic acid, are recognized as efficient N,O-donors, exhibiting diverse modes of coordination (Zhang et al., 2004; Xiao et al., 2004; Lu et al., 2006). In this work, we have chosen 2-Pyridin-3-yl-1H-imidazole-4,5-dicarboxylic acid as the building block to obtain the title compound, and we present its crystal structure here. MnII ion lies on an inversion centre and displaying distorted octahedral coordination geometry defined by the two imidazole N atoms, two O toms of the carboxylate groups and two O atoms of the water molecules. The pyridine ring and imidazole rings are twisted from each other by a dihedral angle of 20.78 (2)° (Fig. 1). The crystal structure is stabilized by intermolecular O—H···N, O—H···O and N—H···O, hydrogen bonds. A two-dimensional supramolecular architecture is formed via hydrogen-bond interactions (Table 1 and Fig. 2).