organic compounds
3-Cyclohexylsulfanyl-2-(4-methylphenyl)-5,7-dinitro-1H-indole
aDepartment of Physics, Presidency College (Autonomous), Chennai 600 005, India, bDepartment of Organic Chemistry, School of Chemistry, Madurai Kamaraj University, Madurai 625 021, India, and cCentre of Advanced Study in Crystallography and Biophysics, University of Madras, Guindy Campus, Chennai 600 025, India
*Correspondence e-mail: mnpsy2004@yahoo.com
In the title compound, C21H21N3O4S, the cyclohexane ring adopts a chair conformation. The nitro and methylphenyl groups are all coplanar with the indole ring system. Intramolecular N—H⋯O and C—H⋯S hydrogen bonds generate S(6) ring motifs. The molecules form R22(20) centrosymmetric dimers via intermolecular C—H⋯O hydrogen bonds. A short O⋯O contact [2.842 (2) Å] is observed in the dimer.
Related literature
For related literature, see: Cordell (1981); Farhanullah et al. (2004). For details of hydrogen-bond motifs, see: Bernstein et al. (1995). For puckering parameters, see: Cremer & Pople (1975).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2004); cell APEX2; data reduction: SAINT (Bruker, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, (1997)); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2003).
Supporting information
10.1107/S1600536808027682/ci2656sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536808027682/ci2656Isup2.hkl
A solution of 2-(cyclohexylsulfanyl)-1-(4-methylphenyl)-1-ethanone- N-(2,4-dinitrophenyl)hydrazone (0.001 mol) in dimethylforamide (5 ml) was allowed to cool in an ice bath with stirring. To this stirred solution, phosphorus oxychloride (0.008 mol) was added dropwise and the mixture was subjected to microwave irritation for 30–60 sec under 40% power with a pulse rate of 15 s. The reaction was monitored by TLC and after completion of the reaction, the reaction mixture was poured onto the crushed ice. The solid was filtered and washed with plenty of water. The different compounds present in the mixture were separated by
using petroleum ether and ethyl acetate mixture as The title compound was recrystallized in dichloromethane in 10% yield.The N-bound H atom was located in a difference map and refined freely. C-bound H atoms were positioned geometrically (C-H = 0.93–0.98 Å) and allowed to ride on their parent atoms, with Uiso(H) = 1.5Ueq(C) for methyl H and 1.2Ueq(C) for other H atoms.
Data collection: APEX2 (Bruker, 2004); cell
APEX2 (Bruker, 2004); data reduction: SAINT (Bruker, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, (1997)); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2003).Fig. 1. Molecular structure of the title compound, showing the atomic numbering and 50% probability displacement ellipsoids. Dashed lines indicate hydrogen bonds. |
C21H21N3O4S | Z = 2 |
Mr = 411.47 | F(000) = 432 |
Triclinic, P1 | Dx = 1.403 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 6.1009 (3) Å | Cell parameters from 4582 reflections |
b = 8.5237 (4) Å | θ = 1.1–27.9° |
c = 19.1522 (10) Å | µ = 0.20 mm−1 |
α = 83.551 (3)° | T = 293 K |
β = 84.184 (3)° | Block, colourless |
γ = 81.157 (2)° | 0.30 × 0.20 × 0.16 mm |
V = 974.30 (8) Å3 |
Bruker Kappa APEXII area-detector diffractometer | 4586 independent reflections |
Radiation source: fine-focus sealed tube | 3424 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.036 |
ω and ϕ scans | θmax = 27.9°, θmin = 1.1° |
Absorption correction: multi-scan (SADABS; Sheldrick, 2001) | h = −7→8 |
Tmin = 0.953, Tmax = 0.969 | k = −11→11 |
21439 measured reflections | l = −25→25 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.049 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.170 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.05 | w = 1/[σ2(Fo2) + (0.0969P)2 + 0.289P] where P = (Fo2 + 2Fc2)/3 |
4586 reflections | (Δ/σ)max = 0.043 |
267 parameters | Δρmax = 0.54 e Å−3 |
0 restraints | Δρmin = −0.31 e Å−3 |
C21H21N3O4S | γ = 81.157 (2)° |
Mr = 411.47 | V = 974.30 (8) Å3 |
Triclinic, P1 | Z = 2 |
a = 6.1009 (3) Å | Mo Kα radiation |
b = 8.5237 (4) Å | µ = 0.20 mm−1 |
c = 19.1522 (10) Å | T = 293 K |
α = 83.551 (3)° | 0.30 × 0.20 × 0.16 mm |
β = 84.184 (3)° |
Bruker Kappa APEXII area-detector diffractometer | 4586 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2001) | 3424 reflections with I > 2σ(I) |
Tmin = 0.953, Tmax = 0.969 | Rint = 0.036 |
21439 measured reflections |
R[F2 > 2σ(F2)] = 0.049 | 0 restraints |
wR(F2) = 0.170 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.05 | Δρmax = 0.54 e Å−3 |
4586 reflections | Δρmin = −0.31 e Å−3 |
267 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
S1 | 0.37693 (9) | 0.57116 (6) | 0.32294 (3) | 0.04681 (19) | |
O1 | −0.1393 (3) | 0.6217 (2) | 0.03507 (9) | 0.0579 (4) | |
O2 | −0.4543 (3) | 0.7672 (3) | 0.05530 (10) | 0.0796 (7) | |
O3 | −0.6221 (3) | 1.0174 (3) | 0.26759 (12) | 0.0825 (6) | |
O4 | −0.3829 (4) | 0.9921 (3) | 0.34373 (11) | 0.0856 (7) | |
N1 | 0.1558 (3) | 0.5458 (2) | 0.13764 (10) | 0.0390 (4) | |
H1 | 0.157 (4) | 0.513 (3) | 0.0989 (13) | 0.038 (6)* | |
C2 | −0.0106 (3) | 0.6496 (2) | 0.16537 (10) | 0.0372 (4) | |
C3 | −0.2102 (3) | 0.7282 (2) | 0.14075 (10) | 0.0394 (4) | |
C4 | −0.3508 (3) | 0.8295 (2) | 0.18166 (12) | 0.0442 (5) | |
H4 | −0.4843 | 0.8820 | 0.1657 | 0.053* | |
C5 | −0.2909 (4) | 0.8521 (2) | 0.24679 (11) | 0.0444 (5) | |
C6 | −0.0973 (4) | 0.7772 (2) | 0.27392 (11) | 0.0444 (5) | |
H6 | −0.0619 | 0.7956 | 0.3181 | 0.053* | |
C7 | 0.0435 (3) | 0.6731 (2) | 0.23291 (11) | 0.0395 (4) | |
C8 | 0.2509 (3) | 0.5755 (2) | 0.24487 (11) | 0.0403 (4) | |
C9 | 0.3180 (3) | 0.4986 (2) | 0.18474 (10) | 0.0383 (4) | |
N10 | −0.2723 (3) | 0.7050 (2) | 0.07243 (10) | 0.0481 (4) | |
N11 | −0.4432 (4) | 0.9614 (2) | 0.28929 (11) | 0.0577 (5) | |
C12 | 0.3142 (3) | 0.3850 (2) | 0.37195 (10) | 0.0419 (4) | |
H12 | 0.4020 | 0.2959 | 0.3489 | 0.050* | |
C13 | 0.0732 (4) | 0.3632 (3) | 0.37755 (15) | 0.0607 (6) | |
H13A | 0.0268 | 0.3586 | 0.3309 | 0.073* | |
H13B | −0.0175 | 0.4531 | 0.3981 | 0.073* | |
C14 | 0.0406 (5) | 0.2098 (3) | 0.42342 (17) | 0.0743 (8) | |
H14A | −0.1161 | 0.1982 | 0.4283 | 0.089* | |
H14B | 0.1219 | 0.1197 | 0.4007 | 0.089* | |
C15 | 0.1201 (6) | 0.2090 (4) | 0.49543 (16) | 0.0852 (10) | |
H15A | 0.0299 | 0.2933 | 0.5199 | 0.102* | |
H15B | 0.1024 | 0.1080 | 0.5227 | 0.102* | |
C16 | 0.3607 (6) | 0.2331 (4) | 0.49010 (16) | 0.0825 (9) | |
H16A | 0.4528 | 0.1429 | 0.4703 | 0.099* | |
H16B | 0.4052 | 0.2390 | 0.5368 | 0.099* | |
C17 | 0.3957 (5) | 0.3857 (3) | 0.44377 (13) | 0.0603 (6) | |
H17A | 0.3161 | 0.4768 | 0.4662 | 0.072* | |
H17B | 0.5528 | 0.3959 | 0.4385 | 0.072* | |
C18 | 0.5160 (3) | 0.3879 (2) | 0.16483 (11) | 0.0400 (4) | |
C19 | 0.6844 (4) | 0.3372 (3) | 0.20963 (12) | 0.0499 (5) | |
H19 | 0.6706 | 0.3738 | 0.2540 | 0.060* | |
C20 | 0.8705 (4) | 0.2343 (3) | 0.18971 (13) | 0.0530 (5) | |
H20 | 0.9801 | 0.2029 | 0.2209 | 0.064* | |
C21 | 0.8985 (3) | 0.1762 (3) | 0.12438 (13) | 0.0467 (5) | |
C22 | 0.7331 (4) | 0.2260 (3) | 0.07958 (14) | 0.0560 (6) | |
H22 | 0.7480 | 0.1890 | 0.0352 | 0.067* | |
C23 | 0.5454 (4) | 0.3299 (3) | 0.09918 (12) | 0.0518 (5) | |
H23 | 0.4367 | 0.3615 | 0.0677 | 0.062* | |
C24 | 1.1020 (4) | 0.0629 (3) | 0.10306 (16) | 0.0616 (6) | |
H24A | 1.0768 | 0.0150 | 0.0621 | 0.092* | |
H24B | 1.1321 | −0.0188 | 0.1410 | 0.092* | |
H24C | 1.2269 | 0.1202 | 0.0924 | 0.092* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.0558 (3) | 0.0444 (3) | 0.0442 (3) | −0.0110 (2) | −0.0198 (2) | −0.0025 (2) |
O1 | 0.0530 (9) | 0.0732 (11) | 0.0447 (9) | 0.0112 (8) | −0.0118 (7) | −0.0152 (8) |
O2 | 0.0584 (11) | 0.1142 (16) | 0.0618 (11) | 0.0323 (10) | −0.0311 (9) | −0.0277 (11) |
O3 | 0.0664 (12) | 0.0930 (15) | 0.0803 (14) | 0.0314 (11) | −0.0120 (10) | −0.0287 (11) |
O4 | 0.1046 (16) | 0.0878 (14) | 0.0585 (12) | 0.0318 (12) | −0.0201 (11) | −0.0321 (11) |
N1 | 0.0373 (8) | 0.0439 (9) | 0.0351 (9) | −0.0011 (7) | −0.0091 (7) | −0.0024 (7) |
C2 | 0.0382 (9) | 0.0360 (9) | 0.0368 (10) | −0.0057 (7) | −0.0047 (7) | 0.0006 (7) |
C3 | 0.0396 (10) | 0.0408 (10) | 0.0368 (10) | −0.0033 (8) | −0.0070 (8) | 0.0009 (8) |
C4 | 0.0414 (10) | 0.0416 (10) | 0.0474 (12) | −0.0011 (8) | −0.0062 (8) | 0.0013 (9) |
C5 | 0.0493 (11) | 0.0386 (10) | 0.0427 (11) | −0.0002 (8) | −0.0021 (9) | −0.0028 (8) |
C6 | 0.0542 (12) | 0.0401 (10) | 0.0388 (11) | −0.0042 (9) | −0.0080 (9) | −0.0026 (8) |
C7 | 0.0435 (10) | 0.0369 (10) | 0.0385 (10) | −0.0079 (8) | −0.0080 (8) | 0.0020 (8) |
C8 | 0.0425 (10) | 0.0386 (10) | 0.0406 (11) | −0.0074 (8) | −0.0103 (8) | 0.0012 (8) |
C9 | 0.0364 (9) | 0.0395 (10) | 0.0394 (10) | −0.0065 (7) | −0.0103 (7) | 0.0017 (8) |
N10 | 0.0442 (9) | 0.0563 (11) | 0.0421 (10) | 0.0028 (8) | −0.0110 (7) | −0.0045 (8) |
N11 | 0.0683 (13) | 0.0500 (11) | 0.0498 (12) | 0.0095 (9) | −0.0056 (9) | −0.0080 (9) |
C12 | 0.0511 (11) | 0.0393 (10) | 0.0353 (10) | −0.0009 (8) | −0.0099 (8) | −0.0050 (8) |
C13 | 0.0592 (14) | 0.0618 (15) | 0.0637 (16) | −0.0165 (12) | −0.0139 (11) | 0.0015 (12) |
C14 | 0.0739 (18) | 0.0625 (16) | 0.086 (2) | −0.0213 (14) | 0.0013 (15) | 0.0030 (15) |
C15 | 0.123 (3) | 0.0659 (18) | 0.0593 (18) | −0.0139 (18) | 0.0167 (18) | 0.0067 (14) |
C16 | 0.117 (3) | 0.0775 (19) | 0.0515 (16) | −0.0137 (18) | −0.0255 (16) | 0.0155 (14) |
C17 | 0.0774 (17) | 0.0627 (14) | 0.0435 (13) | −0.0102 (12) | −0.0243 (11) | 0.0011 (11) |
C18 | 0.0365 (9) | 0.0397 (10) | 0.0435 (11) | −0.0053 (8) | −0.0088 (8) | 0.0022 (8) |
C19 | 0.0439 (11) | 0.0604 (13) | 0.0445 (12) | −0.0005 (10) | −0.0111 (9) | −0.0040 (10) |
C20 | 0.0392 (11) | 0.0626 (14) | 0.0554 (13) | −0.0009 (9) | −0.0161 (9) | 0.0039 (11) |
C21 | 0.0387 (10) | 0.0424 (11) | 0.0575 (13) | −0.0035 (8) | −0.0095 (9) | 0.0031 (9) |
C22 | 0.0504 (12) | 0.0610 (14) | 0.0555 (14) | 0.0068 (10) | −0.0132 (10) | −0.0142 (11) |
C23 | 0.0463 (11) | 0.0566 (13) | 0.0514 (13) | 0.0081 (9) | −0.0184 (9) | −0.0093 (10) |
C24 | 0.0446 (12) | 0.0570 (14) | 0.0777 (18) | 0.0057 (10) | −0.0055 (11) | −0.0003 (12) |
S1—C8 | 1.744 (2) | C13—H13B | 0.97 |
S1—C12 | 1.823 (2) | C14—C15 | 1.507 (4) |
O1—N10 | 1.223 (2) | C14—H14A | 0.97 |
O2—N10 | 1.215 (2) | C14—H14B | 0.97 |
O3—N11 | 1.216 (3) | C15—C16 | 1.505 (5) |
O4—N11 | 1.208 (3) | C15—H15A | 0.97 |
N1—C2 | 1.347 (2) | C15—H15B | 0.97 |
N1—C9 | 1.390 (2) | C16—C17 | 1.521 (4) |
N1—H1 | 0.82 (2) | C16—H16A | 0.97 |
C2—C3 | 1.396 (3) | C16—H16B | 0.97 |
C2—C7 | 1.409 (3) | C17—H17A | 0.97 |
C3—C4 | 1.373 (3) | C17—H17B | 0.97 |
C3—N10 | 1.441 (3) | C18—C23 | 1.387 (3) |
C4—C5 | 1.377 (3) | C18—C19 | 1.392 (3) |
C4—H4 | 0.93 | C19—C20 | 1.373 (3) |
C5—C6 | 1.375 (3) | C19—H19 | 0.93 |
C5—N11 | 1.464 (3) | C20—C21 | 1.382 (4) |
C6—C7 | 1.388 (3) | C20—H20 | 0.93 |
C6—H6 | 0.93 | C21—C22 | 1.377 (3) |
C7—C8 | 1.427 (3) | C21—C24 | 1.502 (3) |
C8—C9 | 1.384 (3) | C22—C23 | 1.383 (3) |
C9—C18 | 1.460 (3) | C22—H22 | 0.93 |
C12—C13 | 1.502 (3) | C23—H23 | 0.93 |
C12—C17 | 1.510 (3) | C24—H24A | 0.96 |
C12—H12 | 0.98 | C24—H24B | 0.96 |
C13—C14 | 1.519 (4) | C24—H24C | 0.96 |
C13—H13A | 0.97 | ||
C8—S1—C12 | 103.22 (9) | C15—C14—H14A | 109.3 |
C2—N1—C9 | 110.57 (17) | C13—C14—H14A | 109.3 |
C2—N1—H1 | 124.1 (16) | C15—C14—H14B | 109.3 |
C9—N1—H1 | 125.3 (16) | C13—C14—H14B | 109.3 |
N1—C2—C3 | 133.05 (19) | H14A—C14—H14B | 108.0 |
N1—C2—C7 | 107.39 (17) | C16—C15—C14 | 111.1 (2) |
C3—C2—C7 | 119.55 (18) | C16—C15—H15A | 109.4 |
C4—C3—C2 | 120.10 (19) | C14—C15—H15A | 109.4 |
C4—C3—N10 | 118.89 (18) | C16—C15—H15B | 109.4 |
C2—C3—N10 | 121.01 (18) | C14—C15—H15B | 109.4 |
C3—C4—C5 | 118.86 (19) | H15A—C15—H15B | 108.0 |
C3—C4—H4 | 120.6 | C15—C16—C17 | 110.5 (2) |
C5—C4—H4 | 120.6 | C15—C16—H16A | 109.5 |
C6—C5—C4 | 123.55 (19) | C17—C16—H16A | 109.5 |
C6—C5—N11 | 118.6 (2) | C15—C16—H16B | 109.5 |
C4—C5—N11 | 117.81 (19) | C17—C16—H16B | 109.5 |
C5—C6—C7 | 117.57 (19) | H16A—C16—H16B | 108.1 |
C5—C6—H6 | 121.2 | C12—C17—C16 | 111.0 (2) |
C7—C6—H6 | 121.2 | C12—C17—H17A | 109.4 |
C6—C7—C2 | 120.35 (18) | C16—C17—H17A | 109.4 |
C6—C7—C8 | 132.23 (19) | C12—C17—H17B | 109.4 |
C2—C7—C8 | 107.42 (17) | C16—C17—H17B | 109.4 |
C9—C8—C7 | 106.84 (17) | H17A—C17—H17B | 108.0 |
C9—C8—S1 | 131.38 (15) | C23—C18—C19 | 116.87 (19) |
C7—C8—S1 | 121.76 (16) | C23—C18—C9 | 120.83 (18) |
C8—C9—N1 | 107.76 (17) | C19—C18—C9 | 122.3 (2) |
C8—C9—C18 | 132.49 (18) | C20—C19—C18 | 121.5 (2) |
N1—C9—C18 | 119.74 (18) | C20—C19—H19 | 119.3 |
O2—N10—O1 | 123.43 (19) | C18—C19—H19 | 119.3 |
O2—N10—C3 | 118.61 (18) | C19—C20—C21 | 121.4 (2) |
O1—N10—C3 | 117.96 (17) | C19—C20—H20 | 119.3 |
O4—N11—O3 | 123.6 (2) | C21—C20—H20 | 119.3 |
O4—N11—C5 | 118.0 (2) | C22—C21—C20 | 117.5 (2) |
O3—N11—C5 | 118.3 (2) | C22—C21—C24 | 121.3 (2) |
C13—C12—C17 | 111.4 (2) | C20—C21—C24 | 121.2 (2) |
C13—C12—S1 | 114.70 (15) | C21—C22—C23 | 121.4 (2) |
C17—C12—S1 | 105.15 (15) | C21—C22—H22 | 119.3 |
C13—C12—H12 | 108.5 | C23—C22—H22 | 119.3 |
C17—C12—H12 | 108.5 | C22—C23—C18 | 121.3 (2) |
S1—C12—H12 | 108.5 | C22—C23—H23 | 119.3 |
C12—C13—C14 | 109.6 (2) | C18—C23—H23 | 119.3 |
C12—C13—H13A | 109.8 | C21—C24—H24A | 109.5 |
C14—C13—H13A | 109.8 | C21—C24—H24B | 109.5 |
C12—C13—H13B | 109.8 | H24A—C24—H24B | 109.5 |
C14—C13—H13B | 109.8 | C21—C24—H24C | 109.5 |
H13A—C13—H13B | 108.2 | H24A—C24—H24C | 109.5 |
C15—C14—C13 | 111.5 (2) | H24B—C24—H24C | 109.5 |
C9—N1—C2—C3 | −178.5 (2) | C2—C3—N10—O2 | 175.0 (2) |
C9—N1—C2—C7 | 0.4 (2) | C4—C3—N10—O1 | 175.8 (2) |
N1—C2—C3—C4 | 179.9 (2) | C2—C3—N10—O1 | −4.1 (3) |
C7—C2—C3—C4 | 1.1 (3) | C4—C3—N10—O1 | 175.8 (2) |
N1—C2—C3—N10 | −0.2 (3) | C2—C3—N10—O1 | −4.1 (3) |
C7—C2—C3—N10 | −179.03 (18) | C6—C5—N11—O4 | 6.6 (3) |
C2—C3—C4—C5 | 0.2 (3) | C4—C5—N11—O4 | −173.8 (2) |
N10—C3—C4—C5 | −179.71 (19) | C6—C5—N11—O3 | −174.2 (2) |
C3—C4—C5—C6 | −0.6 (3) | C4—C5—N11—O3 | 5.4 (3) |
C3—C4—C5—N11 | 179.72 (19) | C8—S1—C12—C13 | −50.48 (19) |
C4—C5—C6—C7 | −0.2 (3) | C8—S1—C12—C17 | −173.23 (16) |
N11—C5—C6—C7 | 179.44 (19) | C17—C12—C13—C14 | −57.0 (3) |
C5—C6—C7—C2 | 1.5 (3) | S1—C12—C13—C14 | −176.27 (18) |
C5—C6—C7—C8 | −178.8 (2) | C12—C13—C14—C15 | 56.9 (3) |
N1—C2—C7—C6 | 178.97 (18) | C13—C14—C15—C16 | −56.9 (3) |
C3—C2—C7—C6 | −1.9 (3) | C14—C15—C16—C17 | 55.5 (4) |
N1—C2—C7—C8 | −0.8 (2) | C13—C12—C17—C16 | 57.0 (3) |
C3—C2—C7—C8 | 178.26 (17) | S1—C12—C17—C16 | −178.1 (2) |
C6—C7—C8—C9 | −178.8 (2) | C15—C16—C17—C12 | −55.6 (3) |
C2—C7—C8—C9 | 1.0 (2) | C8—C9—C18—C23 | −178.5 (2) |
C6—C7—C8—S1 | −0.1 (3) | N1—C9—C18—C23 | 0.5 (3) |
C2—C7—C8—S1 | 179.67 (14) | C8—C9—C18—C19 | 0.7 (4) |
C12—S1—C8—C9 | −79.3 (2) | N1—C9—C18—C19 | 179.66 (19) |
C12—S1—C8—C7 | 102.35 (17) | C23—C18—C19—C20 | −0.1 (3) |
C7—C8—C9—N1 | −0.7 (2) | C9—C18—C19—C20 | −179.3 (2) |
S1—C8—C9—N1 | −179.26 (15) | C18—C19—C20—C21 | −0.2 (4) |
C7—C8—C9—C18 | 178.3 (2) | C19—C20—C21—C22 | 0.3 (4) |
S1—C8—C9—C18 | −0.2 (4) | C19—C20—C21—C24 | −179.7 (2) |
C2—N1—C9—C8 | 0.2 (2) | C20—C21—C22—C23 | −0.2 (4) |
C2—N1—C9—C18 | −178.97 (17) | C24—C21—C22—C23 | 179.8 (2) |
O1—O1—N10—O2 | 0.00 (4) | C21—C22—C23—C18 | −0.1 (4) |
O1—O1—N10—C3 | 0.00 (14) | C19—C18—C23—C22 | 0.2 (3) |
C4—C3—N10—O2 | −5.1 (3) | C9—C18—C23—C22 | 179.5 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1 | 0.82 (2) | 2.30 (2) | 2.755 (2) | 115 (2) |
C19—H19···S1 | 0.93 | 2.62 | 3.347 (2) | 135 |
C22—H22···O2i | 0.93 | 2.58 | 3.224 (3) | 127 |
Symmetry code: (i) −x, −y+1, −z. |
Experimental details
Crystal data | |
Chemical formula | C21H21N3O4S |
Mr | 411.47 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 293 |
a, b, c (Å) | 6.1009 (3), 8.5237 (4), 19.1522 (10) |
α, β, γ (°) | 83.551 (3), 84.184 (3), 81.157 (2) |
V (Å3) | 974.30 (8) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.20 |
Crystal size (mm) | 0.30 × 0.20 × 0.16 |
Data collection | |
Diffractometer | Bruker Kappa APEXII area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 2001) |
Tmin, Tmax | 0.953, 0.969 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 21439, 4586, 3424 |
Rint | 0.036 |
(sin θ/λ)max (Å−1) | 0.658 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.049, 0.170, 1.05 |
No. of reflections | 4586 |
No. of parameters | 267 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.54, −0.31 |
Computer programs: APEX2 (Bruker, 2004), SAINT (Bruker, 2004), SHELXS97 (Sheldrick, 2008), ORTEP-3 (Farrugia, (1997)), SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2003).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1 | 0.82 (2) | 2.30 (2) | 2.755 (2) | 115 (2) |
C19—H19···S1 | 0.93 | 2.62 | 3.347 (2) | 135 |
C22—H22···O2i | 0.93 | 2.58 | 3.224 (3) | 127 |
Symmetry code: (i) −x, −y+1, −z. |
Acknowledgements
PR thanks Dr Babu Varghese, SAIF, IIT-Madras, Chennai, India, for his help with the data collection.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Indole, being an integral part of many natural products of therapeutic importance, possesses potentially reactive sites for a variety of chemical reactions to generate molecular diversity (Farhanullah et al., 2004). The spiro-indole ring system is a frequently encountered structural motif in many biologically important and pharmacologically relevant alkaloids, e.g. vincrinstine, vinblastine and spirotypostatins (Cordell, 1981). Against this background and to ascertain the detailed information on its molecular conformation, the structure determination of the title compound was carried out.
The indole ring system is planar and the two nitro groups are coplanar with it. The cyclohexane ring adopts a chair conformation, with puckering parameters (Cremer & Pople, 1975) q2 = 0.010 (3) Å, q3 = 0.574 (3) Å and ϕ = 51 (18)°. The methylphenyl group is also coplanar with the indole ring system [dihedral angle 1.98 (9)°]. Each of the intramolecular N1—H1···O1 and C19—H19···S1 hydrogen bonds generates an S(6) ring motif (Bernstein et al. 1995).
In the crystal structure, molecules at (x, y, z) and (-x, 1-y, -z) are linked into a centrosymmetric R22(20) dimer by C22—H22···O2 hydrogen bonds. Within the dimer, a short O1···O1 contact [2.842 (2) Å] is observed.