metal-organic compounds
Butane-1,4-diammonium bis(pyridine-2,6-dicarboxylato-κ3O2,N,O6)cadmate(II) dihydrate
aDepartment of Chemistry, Islamic Azad University, Yazd Branch, Yazd, Iran, and bFaculty of Chemistry, Tarbiat Moallem University, 49 Mofateh Avenue, Tehran, Iran
*Correspondence e-mail: tabatabaee45m@yahoo.com
In the title compound, (C4H14N2)[Cd(C7H3NO4)2]·2H2O, the CdII ion is coordinated by four O atoms [Cd—O = 2.2399 (17)–2.2493 (17) Å] and two N atoms [Cd—N = 2.3113 (15) and 2.3917 (15) Å] from two tridentate pyridine-2,6-dicarboxylato ligands in a distorted octahedral geometry. The uncoordinated water molecules are involved in O—H⋯O and N—H⋯O hydrogen bonds, which contribute to the formation of a three-dimensional supramolecular structure, along with π–π stacking interactions [centroid–centroid distances of 3.5313 (13) and 3.6028 (11) Å between the pyridine rings of neighbouring dianions].
Related literature
For related literature, see: Aghabozorg, Firoozi et al. (2008); Aghabozorg, Manteghi et al. (2008); Odoko et al. (2002).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2005); cell APEX2; data reduction: APEX2; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536808029395/cv2442sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536808029395/cv2442Isup2.hkl
A mixture of an aqueous solution (30 ml) of the proton transfer compound (bdaH2)(pydc) (100 mg, 0.4 mmol) and cadmium(II) nitrate Cd(NO3)2. 4H2O, (60 mg, 0.2 mmol) were stirred at 0°C. Colorless crystals of the title compound were obtained after 2 months at room temperature.
C-bound H atoms were placed in calculated positions. Positions of N- and O-bound H atoms were found on a difference Fourier map. All hydrogen atoms were refined in riding model approximation, with Uiso(H) equal to 1.2 Ueq(C) and 1.5 Ueq(N, O).
Data collection: APEX2 (Bruker, 2005); cell
APEX2 (Bruker, 2005); data reduction: APEX2 (Bruker, 2005); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. A portion of the crystal structure of I showing the atomic numbering, hydrogen bonds (dashed lines) and 50% displacement ellipsoids [symmetry codes: (A) x - 1,y,z; (B) x - 1,y,z + 1; C) x,-y + 3/2,z + 3/2; (D) x,y,z + 1; (E) -x + 1,-y + 2,-z]. | |
Fig. 2. A portion of the crystal packing showing the π-π stacking interactions between the aromatic rings of the pydc2– dianions as dashed lines. |
(C4H14N2)[Cd(C7H3NO4)2]·2H2O | F(000) = 1152 |
Mr = 568.81 | Dx = 1.768 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 6372 reflections |
a = 11.0357 (4) Å | θ = 2.8–32.1° |
b = 28.7181 (10) Å | µ = 1.09 mm−1 |
c = 7.1116 (3) Å | T = 100 K |
β = 108.544 (1)° | Prism, colourless |
V = 2136.82 (14) Å3 | 0.28 × 0.07 × 0.05 mm |
Z = 4 |
Bruker SMART APEX II CCD area detector diffractometer | 5676 independent reflections |
Radiation source: fine-focus sealed tube | 4655 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.044 |
phi and ω scans | θmax = 29.0°, θmin = 2.0° |
Absorption correction: multi-scan (APEX2; Bruker, 2005) | h = −15→15 |
Tmin = 0.802, Tmax = 0.944 | k = −39→39 |
25988 measured reflections | l = −9→9 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.027 | Hydrogen site location: mixed |
wR(F2) = 0.066 | H-atom parameters constrained |
S = 1.00 | w = 1/[σ2(Fo2) + (0.0369P)2 + 0.2951P] where P = (Fo2 + 2Fc2)/3 |
5676 reflections | (Δ/σ)max = 0.001 |
298 parameters | Δρmax = 0.59 e Å−3 |
0 restraints | Δρmin = −0.71 e Å−3 |
(C4H14N2)[Cd(C7H3NO4)2]·2H2O | V = 2136.82 (14) Å3 |
Mr = 568.81 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 11.0357 (4) Å | µ = 1.09 mm−1 |
b = 28.7181 (10) Å | T = 100 K |
c = 7.1116 (3) Å | 0.28 × 0.07 × 0.05 mm |
β = 108.544 (1)° |
Bruker SMART APEX II CCD area detector diffractometer | 5676 independent reflections |
Absorption correction: multi-scan (APEX2; Bruker, 2005) | 4655 reflections with I > 2σ(I) |
Tmin = 0.802, Tmax = 0.944 | Rint = 0.044 |
25988 measured reflections |
R[F2 > 2σ(F2)] = 0.027 | 0 restraints |
wR(F2) = 0.066 | H-atom parameters constrained |
S = 1.00 | Δρmax = 0.59 e Å−3 |
5676 reflections | Δρmin = −0.71 e Å−3 |
298 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cd1 | 0.653305 (14) | 0.865460 (5) | 0.02554 (2) | 0.01027 (5) | |
O1 | 0.54740 (15) | 0.88396 (5) | 0.2485 (2) | 0.0163 (3) | |
O2 | 0.49107 (15) | 0.94185 (5) | 0.4137 (2) | 0.0177 (3) | |
O3 | 0.74579 (14) | 0.90014 (5) | −0.1942 (2) | 0.0133 (3) | |
O4 | 0.80812 (14) | 0.96709 (5) | −0.2947 (2) | 0.0148 (3) | |
O5 | 0.46311 (14) | 0.83512 (5) | −0.1895 (2) | 0.0130 (3) | |
O6 | 0.35049 (14) | 0.77036 (5) | −0.2989 (2) | 0.0134 (3) | |
O7 | 0.85227 (14) | 0.84106 (5) | 0.2568 (2) | 0.0135 (3) | |
O8 | 0.97512 (14) | 0.77840 (5) | 0.3736 (2) | 0.0140 (3) | |
N1 | 0.66045 (16) | 0.94278 (6) | 0.0692 (2) | 0.0107 (3) | |
N2 | 0.66196 (16) | 0.78722 (6) | 0.0372 (2) | 0.0094 (3) | |
C1 | 0.61249 (19) | 0.96095 (7) | 0.2039 (3) | 0.0106 (4) | |
C2 | 0.6181 (2) | 1.00835 (7) | 0.2422 (3) | 0.0130 (4) | |
H2A | 0.5863 | 1.0207 | 0.3381 | 0.016* | |
C3 | 0.6726 (2) | 1.03710 (7) | 0.1332 (3) | 0.0144 (4) | |
H3A | 0.6780 | 1.0690 | 0.1560 | 0.017* | |
C4 | 0.7193 (2) | 1.01781 (7) | −0.0105 (3) | 0.0137 (4) | |
H4A | 0.7546 | 1.0366 | −0.0861 | 0.016* | |
C5 | 0.71190 (19) | 0.96990 (7) | −0.0379 (3) | 0.0106 (4) | |
C6 | 0.5459 (2) | 0.92595 (7) | 0.2994 (3) | 0.0119 (4) | |
C7 | 0.75859 (19) | 0.94381 (7) | −0.1888 (3) | 0.0108 (4) | |
C8 | 0.56098 (19) | 0.76257 (7) | −0.0730 (3) | 0.0096 (4) | |
C9 | 0.5627 (2) | 0.71438 (7) | −0.0708 (3) | 0.0119 (4) | |
H9A | 0.4929 | 0.6975 | −0.1489 | 0.014* | |
C10 | 0.67082 (19) | 0.69158 (7) | 0.0503 (3) | 0.0120 (4) | |
H10A | 0.6738 | 0.6592 | 0.0553 | 0.014* | |
C11 | 0.7742 (2) | 0.71772 (7) | 0.1635 (3) | 0.0117 (4) | |
H11A | 0.8473 | 0.7032 | 0.2451 | 0.014* | |
C12 | 0.76656 (19) | 0.76590 (7) | 0.1527 (3) | 0.0100 (4) | |
C13 | 0.44812 (19) | 0.79128 (7) | −0.1984 (3) | 0.0106 (4) | |
C14 | 0.87469 (19) | 0.79762 (7) | 0.2713 (3) | 0.0108 (4) | |
N3 | −0.04463 (17) | 0.90758 (6) | 0.5575 (2) | 0.0125 (3) | |
H3NA | 0.0079 | 0.9221 | 0.5045 | 0.019* | |
H3NB | −0.0818 | 0.8834 | 0.4763 | 0.019* | |
H3NC | −0.1029 | 0.9278 | 0.5727 | 0.019* | |
N4 | 0.20003 (17) | 0.80268 (6) | 1.2890 (3) | 0.0129 (4) | |
H4NA | 0.1477 | 0.7916 | 1.3553 | 0.019* | |
H4NB | 0.2523 | 0.7791 | 1.2663 | 0.019* | |
H4NC | 0.2430 | 0.8260 | 1.3538 | 0.019* | |
C15 | 0.0263 (2) | 0.89086 (8) | 0.7619 (3) | 0.0140 (4) | |
H15B | −0.0345 | 0.8793 | 0.8238 | 0.017* | |
H15C | 0.0716 | 0.9169 | 0.8404 | 0.017* | |
C16 | 0.1212 (2) | 0.85258 (8) | 0.7631 (3) | 0.0131 (4) | |
H16B | 0.1777 | 0.8631 | 0.6915 | 0.016* | |
H16C | 0.0753 | 0.8255 | 0.6947 | 0.016* | |
C17 | 0.2010 (2) | 0.83878 (8) | 0.9735 (3) | 0.0137 (4) | |
H17A | 0.2623 | 0.8152 | 0.9671 | 0.016* | |
H17B | 0.2482 | 0.8657 | 1.0409 | 0.016* | |
C18 | 0.11864 (19) | 0.82013 (8) | 1.0923 (3) | 0.0130 (4) | |
H18A | 0.0632 | 0.8447 | 1.1110 | 0.016* | |
H18B | 0.0652 | 0.7950 | 1.0195 | 0.016* | |
O1W | 0.32860 (14) | 0.88159 (5) | 0.4844 (2) | 0.0142 (3) | |
H1WA | 0.3663 | 0.8704 | 0.5821 | 0.021* | |
H1WB | 0.3741 | 0.8990 | 0.4520 | 0.021* | |
O2W | 0.12203 (15) | 0.94242 (6) | 0.3694 (2) | 0.0211 (4) | |
H2WA | 0.1440 | 0.9692 | 0.3542 | 0.032* | |
H2WB | 0.1883 | 0.9273 | 0.4046 | 0.032* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cd1 | 0.01105 (8) | 0.00794 (7) | 0.01223 (8) | −0.00025 (6) | 0.00430 (5) | −0.00009 (6) |
O1 | 0.0229 (8) | 0.0108 (7) | 0.0201 (8) | 0.0005 (6) | 0.0135 (7) | 0.0013 (6) |
O2 | 0.0222 (8) | 0.0159 (8) | 0.0205 (8) | −0.0007 (6) | 0.0148 (7) | 0.0002 (6) |
O3 | 0.0156 (7) | 0.0113 (7) | 0.0159 (7) | −0.0016 (6) | 0.0091 (6) | −0.0021 (6) |
O4 | 0.0179 (8) | 0.0141 (8) | 0.0159 (7) | −0.0007 (6) | 0.0102 (6) | 0.0015 (6) |
O5 | 0.0121 (7) | 0.0112 (7) | 0.0144 (7) | 0.0005 (6) | 0.0025 (6) | 0.0019 (6) |
O6 | 0.0105 (7) | 0.0154 (8) | 0.0126 (7) | −0.0021 (6) | 0.0012 (6) | −0.0001 (6) |
O7 | 0.0126 (7) | 0.0115 (7) | 0.0144 (7) | −0.0007 (6) | 0.0015 (6) | −0.0006 (6) |
O8 | 0.0094 (7) | 0.0175 (8) | 0.0138 (7) | 0.0000 (6) | 0.0017 (6) | 0.0019 (6) |
N1 | 0.0109 (8) | 0.0102 (8) | 0.0118 (8) | 0.0001 (6) | 0.0048 (7) | 0.0001 (6) |
N2 | 0.0100 (8) | 0.0106 (8) | 0.0079 (8) | 0.0002 (6) | 0.0033 (6) | −0.0012 (6) |
C1 | 0.0101 (9) | 0.0128 (10) | 0.0089 (9) | 0.0011 (8) | 0.0030 (7) | 0.0005 (8) |
C2 | 0.0135 (10) | 0.0135 (10) | 0.0126 (10) | −0.0012 (8) | 0.0051 (8) | −0.0041 (8) |
C3 | 0.0179 (11) | 0.0110 (10) | 0.0161 (10) | −0.0017 (8) | 0.0080 (8) | −0.0017 (8) |
C4 | 0.0141 (10) | 0.0130 (10) | 0.0152 (10) | −0.0025 (8) | 0.0062 (8) | 0.0007 (8) |
C5 | 0.0095 (9) | 0.0122 (10) | 0.0108 (9) | 0.0000 (7) | 0.0042 (7) | 0.0006 (7) |
C6 | 0.0134 (10) | 0.0120 (10) | 0.0100 (9) | 0.0006 (8) | 0.0034 (8) | 0.0029 (8) |
C7 | 0.0094 (9) | 0.0116 (10) | 0.0115 (9) | −0.0002 (7) | 0.0035 (8) | −0.0013 (7) |
C8 | 0.0099 (10) | 0.0123 (10) | 0.0082 (9) | −0.0004 (7) | 0.0050 (7) | 0.0016 (7) |
C9 | 0.0138 (10) | 0.0121 (10) | 0.0110 (9) | −0.0015 (8) | 0.0059 (8) | −0.0005 (8) |
C10 | 0.0160 (11) | 0.0092 (9) | 0.0122 (10) | 0.0005 (8) | 0.0066 (8) | 0.0002 (7) |
C11 | 0.0118 (10) | 0.0133 (10) | 0.0109 (9) | 0.0036 (8) | 0.0046 (8) | 0.0030 (8) |
C12 | 0.0102 (9) | 0.0129 (10) | 0.0078 (9) | 0.0002 (7) | 0.0040 (7) | 0.0006 (7) |
C13 | 0.0104 (10) | 0.0134 (10) | 0.0091 (9) | 0.0009 (8) | 0.0045 (8) | 0.0013 (7) |
C14 | 0.0111 (10) | 0.0135 (10) | 0.0091 (9) | −0.0017 (8) | 0.0050 (8) | −0.0005 (7) |
N3 | 0.0126 (8) | 0.0126 (9) | 0.0126 (8) | −0.0006 (7) | 0.0046 (7) | 0.0000 (7) |
N4 | 0.0126 (9) | 0.0141 (9) | 0.0121 (8) | 0.0005 (7) | 0.0042 (7) | 0.0002 (7) |
C15 | 0.0133 (10) | 0.0181 (11) | 0.0108 (10) | −0.0004 (8) | 0.0042 (8) | −0.0019 (8) |
C16 | 0.0122 (10) | 0.0155 (10) | 0.0126 (10) | 0.0012 (8) | 0.0054 (8) | 0.0010 (8) |
C17 | 0.0121 (10) | 0.0159 (11) | 0.0143 (10) | 0.0014 (8) | 0.0058 (8) | 0.0010 (8) |
C18 | 0.0093 (10) | 0.0171 (11) | 0.0119 (10) | 0.0001 (8) | 0.0023 (8) | 0.0018 (8) |
O1W | 0.0137 (8) | 0.0153 (7) | 0.0135 (7) | −0.0005 (6) | 0.0044 (6) | 0.0037 (6) |
O2W | 0.0187 (8) | 0.0174 (8) | 0.0304 (9) | 0.0010 (6) | 0.0123 (7) | 0.0074 (7) |
Cd1—N1 | 2.2399 (17) | C9—H9A | 0.9300 |
Cd1—N2 | 2.2493 (17) | C10—C11 | 1.388 (3) |
Cd1—O1 | 2.3113 (15) | C10—H10A | 0.9300 |
Cd1—O5 | 2.3370 (15) | C11—C12 | 1.387 (3) |
Cd1—O3 | 2.3433 (14) | C11—H11A | 0.9300 |
Cd1—O7 | 2.3917 (15) | C12—C14 | 1.525 (3) |
O1—C6 | 1.261 (3) | N3—C15 | 1.494 (3) |
O2—C6 | 1.244 (3) | N3—H3NA | 0.8893 |
O3—C7 | 1.262 (2) | N3—H3NB | 0.9137 |
O4—C7 | 1.255 (2) | N3—H3NC | 0.8970 |
O5—C13 | 1.269 (2) | N4—C18 | 1.488 (3) |
O6—C13 | 1.242 (2) | N4—H4NA | 0.9110 |
O7—C14 | 1.269 (2) | N4—H4NB | 0.9372 |
O8—C14 | 1.245 (2) | N4—H4NC | 0.8628 |
N1—C5 | 1.336 (3) | C15—C16 | 1.517 (3) |
N1—C1 | 1.339 (3) | C15—H15B | 0.9700 |
N2—C12 | 1.334 (3) | C15—H15C | 0.9700 |
N2—C8 | 1.342 (3) | C16—C17 | 1.528 (3) |
C1—C2 | 1.386 (3) | C16—H16B | 0.9700 |
C1—C6 | 1.526 (3) | C16—H16C | 0.9700 |
C2—C3 | 1.394 (3) | C17—C18 | 1.521 (3) |
C2—H2A | 0.9300 | C17—H17A | 0.9700 |
C3—C4 | 1.397 (3) | C17—H17B | 0.9700 |
C3—H3A | 0.9300 | C18—H18A | 0.9700 |
C4—C5 | 1.388 (3) | C18—H18B | 0.9700 |
C4—H4A | 0.9300 | O1W—H1WA | 0.7580 |
C5—C7 | 1.526 (3) | O1W—H1WB | 0.7927 |
C8—C9 | 1.384 (3) | O2W—H2WA | 0.8246 |
C8—C13 | 1.523 (3) | O2W—H2WB | 0.8183 |
C9—C10 | 1.393 (3) | ||
N1—Cd1—N2 | 170.37 (6) | C11—C10—H10A | 120.4 |
N1—Cd1—O1 | 71.35 (6) | C9—C10—H10A | 120.4 |
N2—Cd1—O1 | 103.25 (6) | C12—C11—C10 | 118.90 (19) |
N1—Cd1—O5 | 116.42 (6) | C12—C11—H11A | 120.5 |
N2—Cd1—O5 | 70.76 (5) | C10—C11—H11A | 120.5 |
O1—Cd1—O5 | 89.41 (6) | N2—C12—C11 | 121.14 (19) |
N1—Cd1—O3 | 70.59 (6) | N2—C12—C14 | 115.98 (18) |
N2—Cd1—O3 | 115.25 (5) | C11—C12—C14 | 122.87 (18) |
O1—Cd1—O3 | 141.50 (5) | O6—C13—O5 | 125.73 (19) |
O5—Cd1—O3 | 102.30 (5) | O6—C13—C8 | 118.25 (18) |
N1—Cd1—O7 | 102.18 (6) | O5—C13—C8 | 116.01 (17) |
N2—Cd1—O7 | 70.31 (5) | O8—C14—O7 | 126.69 (19) |
O1—Cd1—O7 | 98.60 (5) | O8—C14—C12 | 116.93 (18) |
O5—Cd1—O7 | 141.06 (5) | O7—C14—C12 | 116.37 (18) |
O3—Cd1—O7 | 94.81 (5) | C15—N3—H3NA | 110.6 |
C6—O1—Cd1 | 118.20 (13) | C15—N3—H3NB | 111.2 |
C7—O3—Cd1 | 118.05 (12) | H3NA—N3—H3NB | 108.0 |
C13—O5—Cd1 | 118.57 (13) | C15—N3—H3NC | 105.3 |
C14—O7—Cd1 | 117.15 (13) | H3NA—N3—H3NC | 109.7 |
C5—N1—C1 | 121.14 (18) | H3NB—N3—H3NC | 111.9 |
C5—N1—Cd1 | 120.09 (14) | C18—N4—H4NA | 108.1 |
C1—N1—Cd1 | 118.76 (13) | C18—N4—H4NB | 107.6 |
C12—N2—C8 | 120.84 (18) | H4NA—N4—H4NB | 111.3 |
C12—N2—Cd1 | 119.97 (13) | C18—N4—H4NC | 107.8 |
C8—N2—Cd1 | 119.19 (13) | H4NA—N4—H4NC | 108.9 |
N1—C1—C2 | 121.36 (19) | H4NB—N4—H4NC | 112.9 |
N1—C1—C6 | 114.67 (18) | N3—C15—C16 | 112.65 (17) |
C2—C1—C6 | 123.87 (18) | N3—C15—H15B | 109.1 |
C1—C2—C3 | 118.22 (19) | C16—C15—H15B | 109.1 |
C1—C2—H2A | 120.9 | N3—C15—H15C | 109.1 |
C3—C2—H2A | 120.9 | C16—C15—H15C | 109.1 |
C2—C3—C4 | 119.8 (2) | H15B—C15—H15C | 107.8 |
C2—C3—H3A | 120.1 | C15—C16—C17 | 112.01 (17) |
C4—C3—H3A | 120.1 | C15—C16—H16B | 109.2 |
C5—C4—C3 | 118.46 (19) | C17—C16—H16B | 109.2 |
C5—C4—H4A | 120.8 | C15—C16—H16C | 109.2 |
C3—C4—H4A | 120.8 | C17—C16—H16C | 109.2 |
N1—C5—C4 | 120.96 (19) | H16B—C16—H16C | 107.9 |
N1—C5—C7 | 114.49 (18) | C18—C17—C16 | 112.08 (17) |
C4—C5—C7 | 124.55 (18) | C18—C17—H17A | 109.2 |
O2—C6—O1 | 126.3 (2) | C16—C17—H17A | 109.2 |
O2—C6—C1 | 116.86 (18) | C18—C17—H17B | 109.2 |
O1—C6—C1 | 116.76 (18) | C16—C17—H17B | 109.2 |
O4—C7—O3 | 125.23 (19) | H17A—C17—H17B | 107.9 |
O4—C7—C5 | 118.00 (18) | N4—C18—C17 | 110.61 (17) |
O3—C7—C5 | 116.76 (17) | N4—C18—H18A | 109.5 |
N2—C8—C9 | 120.98 (18) | C17—C18—H18A | 109.5 |
N2—C8—C13 | 115.40 (17) | N4—C18—H18B | 109.5 |
C9—C8—C13 | 123.63 (18) | C17—C18—H18B | 109.5 |
C8—C9—C10 | 118.89 (19) | H18A—C18—H18B | 108.1 |
C8—C9—H9A | 120.6 | H1WA—O1W—H1WB | 108.6 |
C10—C9—H9A | 120.6 | H2WA—O2W—H2WB | 105.3 |
C11—C10—C9 | 119.24 (19) | ||
N1—Cd1—O1—C6 | −3.07 (15) | C1—N1—C5—C7 | −178.33 (17) |
N2—Cd1—O1—C6 | 168.63 (15) | Cd1—N1—C5—C7 | 1.7 (2) |
O5—Cd1—O1—C6 | −121.31 (16) | C3—C4—C5—N1 | 0.5 (3) |
O3—Cd1—O1—C6 | −12.1 (2) | C3—C4—C5—C7 | 179.94 (19) |
O7—Cd1—O1—C6 | 96.96 (16) | Cd1—O1—C6—O2 | 178.27 (17) |
N1—Cd1—O3—C7 | 0.66 (14) | Cd1—O1—C6—C1 | 1.3 (2) |
N2—Cd1—O3—C7 | −171.05 (14) | N1—C1—C6—O2 | −174.47 (18) |
O1—Cd1—O3—C7 | 9.71 (18) | C2—C1—C6—O2 | 2.0 (3) |
O5—Cd1—O3—C7 | 114.61 (14) | N1—C1—C6—O1 | 2.8 (3) |
O7—Cd1—O3—C7 | −100.58 (14) | C2—C1—C6—O1 | 179.3 (2) |
N1—Cd1—O5—C13 | −170.64 (14) | Cd1—O3—C7—O4 | 178.78 (16) |
N2—Cd1—O5—C13 | 2.38 (14) | Cd1—O3—C7—C5 | 0.0 (2) |
O1—Cd1—O5—C13 | −101.88 (14) | N1—C5—C7—O4 | −179.97 (18) |
O3—Cd1—O5—C13 | 115.11 (14) | C4—C5—C7—O4 | 0.6 (3) |
O7—Cd1—O5—C13 | 1.14 (18) | N1—C5—C7—O3 | −1.1 (3) |
N1—Cd1—O7—C14 | 177.80 (14) | C4—C5—C7—O3 | 179.49 (19) |
N2—Cd1—O7—C14 | 4.07 (14) | C12—N2—C8—C9 | −0.4 (3) |
O1—Cd1—O7—C14 | 105.15 (14) | Cd1—N2—C8—C9 | 179.68 (14) |
O5—Cd1—O7—C14 | 5.33 (18) | C12—N2—C8—C13 | −179.87 (17) |
O3—Cd1—O7—C14 | −111.05 (14) | Cd1—N2—C8—C13 | 0.2 (2) |
O1—Cd1—N1—C5 | −175.36 (16) | N2—C8—C9—C10 | 0.9 (3) |
O5—Cd1—N1—C5 | −95.72 (15) | C13—C8—C9—C10 | −179.67 (18) |
O3—Cd1—N1—C5 | −1.29 (14) | C8—C9—C10—C11 | −0.7 (3) |
O7—Cd1—N1—C5 | 89.55 (15) | C9—C10—C11—C12 | 0.1 (3) |
O1—Cd1—N1—C1 | 4.68 (14) | C8—N2—C12—C11 | −0.3 (3) |
O5—Cd1—N1—C1 | 84.32 (15) | Cd1—N2—C12—C11 | 179.66 (14) |
O3—Cd1—N1—C1 | 178.74 (16) | C8—N2—C12—C14 | −179.80 (17) |
O7—Cd1—N1—C1 | −90.41 (15) | Cd1—N2—C12—C14 | 0.1 (2) |
O1—Cd1—N2—C12 | −96.51 (15) | C10—C11—C12—N2 | 0.4 (3) |
O5—Cd1—N2—C12 | 178.85 (16) | C10—C11—C12—C14 | 179.90 (18) |
O3—Cd1—N2—C12 | 83.98 (15) | Cd1—O5—C13—O6 | 176.78 (16) |
O7—Cd1—N2—C12 | −1.98 (14) | Cd1—O5—C13—C8 | −3.1 (2) |
O1—Cd1—N2—C8 | 83.43 (15) | N2—C8—C13—O6 | −177.92 (17) |
O5—Cd1—N2—C8 | −1.21 (13) | C9—C8—C13—O6 | 2.6 (3) |
O3—Cd1—N2—C8 | −96.08 (14) | N2—C8—C13—O5 | 1.9 (3) |
O7—Cd1—N2—C8 | 177.96 (16) | C9—C8—C13—O5 | −177.53 (19) |
C5—N1—C1—C2 | −2.2 (3) | Cd1—O7—C14—O8 | 175.41 (16) |
Cd1—N1—C1—C2 | 177.80 (15) | Cd1—O7—C14—C12 | −5.4 (2) |
C5—N1—C1—C6 | 174.40 (18) | N2—C12—C14—O8 | −177.06 (17) |
Cd1—N1—C1—C6 | −5.6 (2) | C11—C12—C14—O8 | 3.4 (3) |
N1—C1—C2—C3 | 1.4 (3) | N2—C12—C14—O7 | 3.6 (3) |
C6—C1—C2—C3 | −174.79 (19) | C11—C12—C14—O7 | −175.88 (19) |
C1—C2—C3—C4 | 0.2 (3) | N3—C15—C16—C17 | 175.10 (17) |
C2—C3—C4—C5 | −1.2 (3) | C15—C16—C17—C18 | 61.0 (2) |
C1—N1—C5—C4 | 1.1 (3) | C16—C17—C18—N4 | 174.37 (17) |
Cd1—N1—C5—C4 | −178.82 (15) |
D—H···A | D—H | H···A | D···A | D—H···A |
N3—H3NA···O2W | 0.89 | 1.90 | 2.782 (2) | 169 |
N3—H3NB···O7i | 0.91 | 1.93 | 2.823 (2) | 166 |
N3—H3NC···O4ii | 0.90 | 1.93 | 2.784 (2) | 159 |
N4—H4NA···O8ii | 0.91 | 1.99 | 2.821 (3) | 152 |
N4—H4NB···O6iii | 0.94 | 1.93 | 2.865 (2) | 176 |
N4—H4NC···O1Wiv | 0.86 | 1.94 | 2.797 (2) | 175 |
O1W—H1WA···O5iv | 0.76 | 1.92 | 2.678 (2) | 173 |
O1W—H1WB···O2 | 0.79 | 1.87 | 2.653 (2) | 172 |
O2W—H2WA···O4v | 0.82 | 1.99 | 2.809 (2) | 175 |
O2W—H2WB···O1W | 0.82 | 1.97 | 2.781 (2) | 170 |
Symmetry codes: (i) x−1, y, z; (ii) x−1, y, z+1; (iii) x, −y+3/2, z+3/2; (iv) x, y, z+1; (v) −x+1, −y+2, −z. |
Experimental details
Crystal data | |
Chemical formula | (C4H14N2)[Cd(C7H3NO4)2]·2H2O |
Mr | 568.81 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 100 |
a, b, c (Å) | 11.0357 (4), 28.7181 (10), 7.1116 (3) |
β (°) | 108.544 (1) |
V (Å3) | 2136.82 (14) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 1.09 |
Crystal size (mm) | 0.28 × 0.07 × 0.05 |
Data collection | |
Diffractometer | Bruker SMART APEX II CCD area detector diffractometer |
Absorption correction | Multi-scan (APEX2; Bruker, 2005) |
Tmin, Tmax | 0.802, 0.944 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 25988, 5676, 4655 |
Rint | 0.044 |
(sin θ/λ)max (Å−1) | 0.682 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.027, 0.066, 1.00 |
No. of reflections | 5676 |
No. of parameters | 298 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.59, −0.71 |
Computer programs: APEX2 (Bruker, 2005), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
N3—H3NA···O2W | 0.89 | 1.90 | 2.782 (2) | 169 |
N3—H3NB···O7i | 0.91 | 1.93 | 2.823 (2) | 166 |
N3—H3NC···O4ii | 0.90 | 1.93 | 2.784 (2) | 159 |
N4—H4NA···O8ii | 0.91 | 1.99 | 2.821 (3) | 152 |
N4—H4NB···O6iii | 0.94 | 1.93 | 2.865 (2) | 176 |
N4—H4NC···O1Wiv | 0.86 | 1.94 | 2.797 (2) | 175 |
O1W—H1WA···O5iv | 0.76 | 1.92 | 2.678 (2) | 173 |
O1W—H1WB···O2 | 0.79 | 1.87 | 2.653 (2) | 172 |
O2W—H2WA···O4v | 0.82 | 1.99 | 2.809 (2) | 175 |
O2W—H2WB···O1W | 0.82 | 1.97 | 2.781 (2) | 170 |
Symmetry codes: (i) x−1, y, z; (ii) x−1, y, z+1; (iii) x, −y+3/2, z+3/2; (iv) x, y, z+1; (v) −x+1, −y+2, −z. |
References
Aghabozorg, H., Firoozi, N., Roshan, L., Attar Gharamaleki, J. & Ghadermazi, M. (2008). Acta Cryst. E64, m743–m744. Web of Science CSD CrossRef IUCr Journals Google Scholar
Aghabozorg, H., Manteghi, F. & Sheshmani, S. (2008). J. Iran. Chem. Soc. 5, 184–227. CrossRef CAS Google Scholar
Bruker (2005). APEX2. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Odoko, M., Kusano, A. & Okabe, N. (2002). Acta Cryst. E58, m25–m27. Web of Science CSD CrossRef IUCr Journals Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Our research group has recently focused on a one-pot synthesis of water soluble self-assembly systems that can function as suitable ligands in the synthesis of metal complexes. In connection with this research area, pyridine2,6-dicarboxylic acid (pydcH2) has been selected as a proton donor and different amines as acceptor agents, and several metal complexes of these systems have been synthesized and their X-ray crystal structures reported (Aghabozorg, Firoozi et al., 2008; Aghabozorg, Manteghi et al., 2008). The major intermolecular interactions that are required in the preparation of supramolecular metal complexes have been present in most of these complexes. In order to develop novel systems, we report here a new complex of CdII with butane-1,4-diammonium pyridine-2,6-dicarboxylato as a proton transfer compound.
The title compound, I, consists of [Cd(pydc)2]2- anion (pydcH2= pyridine-2,6-dicarboxylic acid), (bdaH2)2+ cation (bda=butane-1,4-diamine) and two uncoordinated water molecules (Fig. 1). CdII atom is six-coordinated by the four O and two N atoms from two (pydc)2- ligands. The coordinating bond lengths (Cd—N 2.2399 (17) and 2.2493 (17) Å, and Cd—O 2.3113 (15), 2.3370 (15), 2.3433 (14) and 2.3917 (15) Å) lie in the normal ranges corresponding to those in realated complexes of CdII containing pyridine-2,6-dicarboxylate as a ligand (Odoko et al., 2002). The bond lengths and bond angles around of metal center indicate that the geometric arrangement of six donor atoms around the CdII atom is distorted octahedral.
The N1—Cd1—N2 angle (170.36 (6)°) deviates slightly from linearity. The O1–Cd1–O5 and O3–Cd1–O7 bond angles and O1–Cd1–O5—C13 and O1–Cd1–O7—C14 torsion angles are 89.41 (6)°, 94.81 (5)°, -101.88 (14)° and 105.15 (14)°, respectively, indicating that two dianionic(pydc)2– fragments are almost perpendicular to each other.The bond angles O1–Cd1–O3 [141.50 (5)°] and O5–Cd1–O7 [141.06 (5)°] indicate that the four carboxylate groups of the two dianions are oriented in a flattened tetrahedral arrangement around the CdIIatom.
In the crystal, there are O—H···O and N—H···O hydrogen bonding interactions between the cations, anions and uncoordinated water molecules (Table 1). The water molecules acts also as bridging agents and link the cations to anions via hydrogen bonds (Fig. 1) and therefore, the spaces between two layers of [Cd(pydc)2]2– anions are filled with (badH2)2+ cations and water molecules. There are also π-π stacking interactions (Fig. 2) between the aromatic rings of the coordinated (pydc)2- anions proved by short distances Cg1···Cg1(1-x,2-y,-z) of 3.5313 (13) Å (Cg1 is a centroid of N1/C2—C5), and Cg2···Cg2(x,3/2-y,1/2+z) of 3.6028 (11) Å (Cg2 is a centroid of N2/C8—C12). Ion pairing, hydrogen bonding and π–π stacking interactions stabilize the crystal packing.