organic compounds
7,7′-(3,3′-Dibenzyl-3H,3′H-4,4′-bi-1,2,3-triazole-5,5′-diyl)bis(4-methyl-2H-chromen-2-one)
aAlberta Ingenuity Centre for Carbohydrate Science, Department of Chemistry, University of Alberta, Edmonton, Alberta, Canada T6G 2G2, and bX-ray Crystallography Laboratory, Department of Chemistry, University of Alberta, Edmonton, Alberta, Canada T6G 2G2
*Correspondence e-mail: michael.ferguson@ualberta.ca
The title compound, a bis-5,5′-triazole, C38H28N6O4, was observed as a side-product from the Sharpless–Meldal click reaction of the corresponding coumarin alkyne and benzylazide. Although the compound was present as a minor component, it crystallized in preference to the major product. The two triazole rings are almost orthogonal to each other [dihedral angle = 83.8 (1)°]. However the 4 and 4′ coumarin systems are close to coplanar with their respective triazole rings [23.6 (1) and 15.1 (1)°]. Each of the benzene rings packs approximately face-to-face with the opposing coumarin ring systems, with interplanar angles of 7.7 (1) and 25.3 (1)° and distances of 3.567 (2) and 3.929 (2) Å between the respective centroids of the opposing rings.
Related literature
Similar 5,5′-bistriazole structures have been described previously by Angell & Burgess (2007). For the synthesis of related alkyne-modified see: Sivakumar et al. (2004); Zhou & Fahrni (2004).
Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 1997); cell SAINT (Bruker, 1997); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536808028250/fb2110sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536808028250/fb2110Isup2.hkl
Synthesis of triazole (IV): The alkyne, (III) (1 equiv), and benzyl azide (4–5 equiv) were dissolved in a 1:1 solution of methanol:water (0.03 M alkyne). CuI (0.2 equiv) was then added, followed by triethylamine (TEA) (2 equiv). The reaction proceeded at room temperature and was monitored by thin layer δ 7.85 (dd, 1H, 3J = 10.8 Hz, 4J = 2.1 Hz), 7.76 (s, 1H), 7.67 (d, 1H, 4J = 2.1 Hz), 7.64 (d, 1H, 3J = 10.8 Hz), 7.43- 7.32 (m, 7H), 7.22 (d, 1H, 4J = 1.6 Hz), 7.05 (m, 2H)I, 6.68 (m, 1H)I, 6.29 (d, 1H, 4J = 1 Hz), 6.26 (d, 0.5H, 4J = 1.6 Hz), 5.61 (s, 2H), 4.88 (d, 0.7H, 3J = 15.2 Hz)I, 4.63 (d, 0.7H, 3J = 15.2 Hz)I, 2.45 (s, 3H), 2.37 (s, 1.5H)I. APT 13C NMR (100 MHz, CDCl3): δ 160.7, 160.3, 153.9, 153.5, 152.0, 151.6, 134.3, 132.6, 132.3, 129.3, 129.0, 128.8, 128.6, 128.2, 128.0, 125.2, 121.5, 121.3, 120.1, 119.6, 115.5, 115.0, 113.8, 113.6, 54.5, 53.0, 18.6, 18.5. HRMS calculated for C38H28N6O4: 632.22; observed: 632.21768 ([2M-2H]+). HRMS calculated for C19H15N3O2: 317.12; observed: 340.11635 ([M+Na]+). Rf = 0.68 (10:1 CH2Cl2/MeOH). **NMR peaks attributed to compound I are denoted by a superscript, and were not observed in purified samples of IV.
The reaction was complete within 2–3 h. The crude product was concentrated in vacuo, extracted with chloroform and purified by flash (CH2Cl2/MeOH), a small amount of the bis-5,5'-triazole (I) was present (23%). The mixture of I and IV was dissolved in 200 µl chloroform, followed by 800 µl of hexanes. Suitable crystals were obtained after two weeks. The crystals were used for determination of the X-ray structure. The original product mixture, 77:23 of IV and I, was used for NMR and MS analysis. 1H NMR (400 MHz, CDCl3):**All the hydrogen atoms could have been discerned in the difference
nevertheless, all the H atoms were generated in idealized positions and then refined using a riding model with fixed C—H distances (Caryl = 0.95 Å, Cmethyl = 0.98 Å, Cmethylene = 0.99 Å) and with Uiso(H) = 1.2Ueq(C).Data collection: SMART (Bruker, 1997); cell
SAINT (Bruker, 1997); data reduction: SAINT (Bruker, 1997); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).C38H28N6O4 | F(000) = 1320 |
Mr = 632.66 | Dx = 1.335 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 2863 reflections |
a = 12.4328 (17) Å | θ = 2.3–20.4° |
b = 17.565 (2) Å | µ = 0.09 mm−1 |
c = 14.456 (2) Å | T = 193 K |
β = 94.573 (3)° | Plate, colourless |
V = 3147.0 (7) Å3 | 0.36 × 0.19 × 0.06 mm |
Z = 4 |
Bruker PLATFORM diffractometer/SMART 1000 CCD area-detector | 5703 independent reflections |
Radiation source: fine-focus sealed tube | 3222 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.074 |
Detector resolution: 8.192 pixels mm-1 | θmax = 25.3°, θmin = 1.6° |
ω scans | h = −14→14 |
Absorption correction: multi-scan (SADABS; Sheldrick, 2003) | k = −21→21 |
Tmin = 0.969, Tmax = 0.995 | l = −17→17 |
21410 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.048 | Hydrogen site location: difference Fourier map |
wR(F2) = 0.114 | H-atom parameters constrained |
S = 1.00 | w = 1/[σ2(Fo2) + (0.0383P)2 + 0.7089P] where P = (Fo2 + 2Fc2)/3 |
5703 reflections | (Δ/σ)max < 0.001 |
435 parameters | Δρmax = 0.15 e Å−3 |
0 restraints | Δρmin = −0.16 e Å−3 |
110 constraints |
C38H28N6O4 | V = 3147.0 (7) Å3 |
Mr = 632.66 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 12.4328 (17) Å | µ = 0.09 mm−1 |
b = 17.565 (2) Å | T = 193 K |
c = 14.456 (2) Å | 0.36 × 0.19 × 0.06 mm |
β = 94.573 (3)° |
Bruker PLATFORM diffractometer/SMART 1000 CCD area-detector | 5703 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2003) | 3222 reflections with I > 2σ(I) |
Tmin = 0.969, Tmax = 0.995 | Rint = 0.074 |
21410 measured reflections |
R[F2 > 2σ(F2)] = 0.048 | 0 restraints |
wR(F2) = 0.114 | H-atom parameters constrained |
S = 1.00 | Δρmax = 0.15 e Å−3 |
5703 reflections | Δρmin = −0.16 e Å−3 |
435 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | −0.04554 (13) | 0.38038 (9) | 0.61080 (10) | 0.0487 (4) | |
O2 | −0.11506 (15) | 0.35827 (9) | 0.74362 (12) | 0.0611 (5) | |
O3 | 0.40923 (16) | 0.24278 (11) | 0.23341 (13) | 0.0765 (6) | |
O4 | 0.5627 (2) | 0.20011 (15) | 0.29991 (18) | 0.1143 (9) | |
N1 | 0.22902 (15) | 0.49591 (11) | 0.24171 (13) | 0.0435 (5) | |
N2 | 0.27468 (17) | 0.50775 (12) | 0.32747 (14) | 0.0529 (6) | |
N3 | 0.21771 (16) | 0.47016 (11) | 0.38566 (13) | 0.0493 (5) | |
N4 | −0.01392 (15) | 0.46189 (10) | 0.12514 (12) | 0.0399 (5) | |
N5 | −0.05450 (16) | 0.42958 (11) | 0.04549 (13) | 0.0460 (5) | |
N6 | 0.00981 (16) | 0.37304 (11) | 0.02675 (13) | 0.0441 (5) | |
C1 | −0.1166 (2) | 0.34162 (14) | 0.66209 (18) | 0.0479 (6) | |
C2 | −0.18458 (19) | 0.28631 (13) | 0.61442 (17) | 0.0471 (6) | |
H2 | −0.2375 | 0.2616 | 0.6476 | 0.056* | |
C3 | −0.17758 (19) | 0.26742 (13) | 0.52525 (17) | 0.0431 (6) | |
C4 | −0.09753 (18) | 0.30559 (12) | 0.47449 (15) | 0.0389 (6) | |
C5 | −0.0778 (2) | 0.28938 (13) | 0.38278 (16) | 0.0466 (6) | |
H5 | −0.1172 | 0.2498 | 0.3507 | 0.056* | |
C6 | −0.00257 (19) | 0.32950 (13) | 0.33810 (16) | 0.0455 (6) | |
H6 | 0.0097 | 0.3171 | 0.2759 | 0.055* | |
C7 | 0.05606 (18) | 0.38843 (12) | 0.38319 (15) | 0.0381 (6) | |
C8 | 0.03910 (18) | 0.40452 (12) | 0.47489 (15) | 0.0407 (6) | |
H8 | 0.0785 | 0.4440 | 0.5071 | 0.049* | |
C9 | −0.03566 (18) | 0.36255 (13) | 0.51869 (15) | 0.0392 (6) | |
C10 | −0.2493 (2) | 0.20886 (15) | 0.47772 (18) | 0.0610 (8) | |
H10A | −0.2972 | 0.1877 | 0.5219 | 0.073* | |
H10B | −0.2052 | 0.1680 | 0.4543 | 0.073* | |
H10C | −0.2927 | 0.2324 | 0.4258 | 0.073* | |
C11 | 0.13516 (18) | 0.43373 (12) | 0.33611 (15) | 0.0392 (6) | |
C12 | 0.14149 (18) | 0.44964 (12) | 0.24347 (15) | 0.0368 (5) | |
C13 | 0.27160 (19) | 0.53422 (14) | 0.16239 (16) | 0.0487 (7) | |
H13A | 0.3156 | 0.5784 | 0.1852 | 0.058* | |
H13B | 0.2105 | 0.5539 | 0.1211 | 0.058* | |
C14 | 0.33957 (19) | 0.48340 (14) | 0.10704 (18) | 0.0476 (6) | |
C15 | 0.3150 (2) | 0.47500 (15) | 0.01346 (18) | 0.0556 (7) | |
H15 | 0.2546 | 0.5013 | −0.0155 | 0.067* | |
C16 | 0.3761 (2) | 0.42923 (18) | −0.0396 (2) | 0.0715 (9) | |
H16 | 0.3577 | 0.4244 | −0.1044 | 0.086* | |
C17 | 0.4629 (3) | 0.39096 (18) | 0.0011 (3) | 0.0779 (10) | |
H17 | 0.5043 | 0.3586 | −0.0349 | 0.094* | |
C18 | 0.4899 (2) | 0.3996 (2) | 0.0946 (3) | 0.0861 (10) | |
H18 | 0.5512 | 0.3738 | 0.1228 | 0.103* | |
C19 | 0.4289 (2) | 0.44567 (18) | 0.1482 (2) | 0.0715 (9) | |
H19 | 0.4482 | 0.4513 | 0.2128 | 0.086* | |
C21 | 0.5019 (3) | 0.19979 (19) | 0.2306 (3) | 0.0810 (10) | |
C22 | 0.5171 (2) | 0.16063 (18) | 0.1459 (3) | 0.0800 (10) | |
H22 | 0.5796 | 0.1299 | 0.1431 | 0.096* | |
C23 | 0.4479 (2) | 0.16503 (17) | 0.0704 (2) | 0.0717 (9) | |
C24 | 0.3521 (2) | 0.21249 (15) | 0.07429 (19) | 0.0562 (7) | |
C25 | 0.2752 (2) | 0.22437 (16) | 0.0006 (2) | 0.0631 (8) | |
H25 | 0.2817 | 0.1980 | −0.0561 | 0.076* | |
C26 | 0.1900 (2) | 0.27323 (14) | 0.00755 (18) | 0.0528 (7) | |
H26 | 0.1389 | 0.2806 | −0.0441 | 0.063* | |
C27 | 0.17829 (19) | 0.31216 (13) | 0.09072 (16) | 0.0431 (6) | |
C28 | 0.2519 (2) | 0.29845 (14) | 0.16581 (17) | 0.0512 (7) | |
H28 | 0.2434 | 0.3224 | 0.2237 | 0.061* | |
C29 | 0.3372 (2) | 0.25008 (15) | 0.15623 (19) | 0.0537 (7) | |
C30 | 0.4669 (3) | 0.1241 (2) | −0.0173 (2) | 0.1060 (13) | |
H30A | 0.5311 | 0.0919 | −0.0072 | 0.127* | |
H30B | 0.4779 | 0.1613 | −0.0663 | 0.127* | |
H30C | 0.4042 | 0.0924 | −0.0361 | 0.127* | |
C31 | 0.09201 (18) | 0.36899 (13) | 0.09483 (15) | 0.0382 (6) | |
C32 | 0.07816 (17) | 0.42608 (12) | 0.15855 (15) | 0.0364 (5) | |
C33 | −0.07212 (19) | 0.52408 (13) | 0.16521 (17) | 0.0481 (6) | |
H33A | −0.1075 | 0.5553 | 0.1145 | 0.058* | |
H33B | −0.0200 | 0.5570 | 0.2018 | 0.058* | |
C34 | −0.1562 (2) | 0.49688 (16) | 0.22682 (16) | 0.0492 (7) | |
C35 | −0.1863 (3) | 0.5442 (2) | 0.2960 (2) | 0.0877 (11) | |
H35 | −0.1547 | 0.5933 | 0.3036 | 0.105* | |
C36 | −0.2617 (3) | 0.5209 (3) | 0.3541 (3) | 0.1298 (18) | |
H36 | −0.2814 | 0.5536 | 0.4022 | 0.156* | |
C37 | −0.3088 (3) | 0.4506 (3) | 0.3432 (3) | 0.1210 (17) | |
H37 | −0.3612 | 0.4349 | 0.3837 | 0.145* | |
C38 | −0.2809 (3) | 0.4032 (2) | 0.2748 (2) | 0.0917 (11) | |
H38 | −0.3137 | 0.3546 | 0.2667 | 0.110* | |
C39 | −0.2042 (2) | 0.42693 (18) | 0.2171 (2) | 0.0676 (8) | |
H39 | −0.1842 | 0.3938 | 0.1694 | 0.081* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0625 (12) | 0.0467 (10) | 0.0383 (10) | −0.0123 (9) | 0.0128 (9) | −0.0055 (8) |
O2 | 0.0865 (14) | 0.0564 (11) | 0.0424 (11) | −0.0080 (10) | 0.0177 (10) | −0.0004 (9) |
O3 | 0.0629 (13) | 0.0901 (15) | 0.0732 (14) | 0.0306 (11) | −0.0150 (11) | −0.0122 (11) |
O4 | 0.0845 (18) | 0.139 (2) | 0.112 (2) | 0.0492 (16) | −0.0406 (16) | −0.0220 (16) |
N1 | 0.0425 (12) | 0.0502 (12) | 0.0374 (12) | −0.0082 (10) | 0.0017 (10) | 0.0042 (10) |
N2 | 0.0550 (14) | 0.0602 (14) | 0.0424 (13) | −0.0147 (11) | −0.0027 (11) | 0.0027 (11) |
N3 | 0.0523 (13) | 0.0551 (13) | 0.0399 (12) | −0.0127 (11) | 0.0001 (11) | 0.0015 (10) |
N4 | 0.0404 (12) | 0.0449 (12) | 0.0346 (11) | 0.0009 (10) | 0.0040 (9) | −0.0021 (9) |
N5 | 0.0431 (12) | 0.0550 (13) | 0.0394 (12) | 0.0023 (11) | 0.0005 (10) | −0.0043 (10) |
N6 | 0.0412 (12) | 0.0510 (13) | 0.0402 (12) | 0.0007 (10) | 0.0041 (10) | −0.0037 (10) |
C1 | 0.0574 (17) | 0.0426 (15) | 0.0453 (16) | 0.0012 (13) | 0.0138 (14) | 0.0065 (13) |
C2 | 0.0447 (15) | 0.0447 (15) | 0.0531 (17) | −0.0056 (12) | 0.0114 (13) | 0.0038 (13) |
C3 | 0.0409 (15) | 0.0391 (14) | 0.0489 (16) | −0.0003 (11) | 0.0011 (13) | 0.0037 (12) |
C4 | 0.0406 (14) | 0.0353 (13) | 0.0404 (15) | −0.0026 (11) | 0.0015 (12) | 0.0006 (11) |
C5 | 0.0547 (17) | 0.0436 (14) | 0.0410 (15) | −0.0109 (13) | −0.0008 (13) | −0.0043 (12) |
C6 | 0.0561 (16) | 0.0476 (15) | 0.0330 (14) | −0.0081 (13) | 0.0046 (12) | −0.0033 (12) |
C7 | 0.0397 (14) | 0.0379 (14) | 0.0363 (14) | 0.0004 (11) | 0.0012 (11) | 0.0023 (11) |
C8 | 0.0479 (15) | 0.0370 (13) | 0.0372 (14) | −0.0084 (11) | 0.0026 (12) | −0.0043 (11) |
C9 | 0.0446 (15) | 0.0386 (14) | 0.0345 (14) | 0.0011 (12) | 0.0041 (12) | −0.0010 (11) |
C10 | 0.0523 (17) | 0.0643 (18) | 0.0657 (19) | −0.0200 (14) | 0.0005 (14) | 0.0008 (15) |
C11 | 0.0421 (14) | 0.0406 (14) | 0.0344 (14) | −0.0030 (11) | 0.0007 (12) | −0.0031 (11) |
C12 | 0.0360 (14) | 0.0363 (13) | 0.0381 (14) | −0.0015 (11) | 0.0036 (11) | 0.0005 (11) |
C13 | 0.0465 (15) | 0.0547 (16) | 0.0452 (15) | −0.0101 (13) | 0.0066 (12) | 0.0112 (12) |
C14 | 0.0345 (14) | 0.0573 (17) | 0.0516 (17) | −0.0077 (12) | 0.0069 (13) | 0.0111 (13) |
C15 | 0.0486 (17) | 0.0635 (18) | 0.0550 (18) | −0.0015 (14) | 0.0052 (14) | 0.0027 (14) |
C16 | 0.065 (2) | 0.085 (2) | 0.066 (2) | −0.0007 (18) | 0.0158 (17) | −0.0099 (17) |
C17 | 0.063 (2) | 0.078 (2) | 0.098 (3) | 0.0030 (18) | 0.038 (2) | 0.003 (2) |
C18 | 0.050 (2) | 0.105 (3) | 0.105 (3) | 0.0202 (18) | 0.020 (2) | 0.028 (2) |
C19 | 0.0469 (18) | 0.102 (2) | 0.066 (2) | 0.0033 (17) | 0.0075 (16) | 0.0221 (18) |
C21 | 0.056 (2) | 0.090 (2) | 0.094 (3) | 0.0247 (18) | −0.015 (2) | −0.013 (2) |
C22 | 0.0467 (19) | 0.085 (2) | 0.107 (3) | 0.0192 (17) | 0.002 (2) | −0.019 (2) |
C23 | 0.0444 (18) | 0.078 (2) | 0.093 (2) | 0.0118 (16) | 0.0065 (18) | −0.0228 (18) |
C24 | 0.0391 (16) | 0.0618 (18) | 0.0676 (19) | 0.0048 (13) | 0.0034 (15) | −0.0201 (15) |
C25 | 0.0468 (17) | 0.078 (2) | 0.0645 (19) | 0.0038 (15) | 0.0040 (15) | −0.0303 (16) |
C26 | 0.0409 (16) | 0.0644 (18) | 0.0525 (16) | 0.0019 (13) | 0.0008 (13) | −0.0155 (14) |
C27 | 0.0366 (14) | 0.0470 (15) | 0.0465 (16) | −0.0010 (12) | 0.0077 (12) | −0.0043 (12) |
C28 | 0.0515 (17) | 0.0579 (17) | 0.0440 (16) | 0.0123 (14) | 0.0022 (13) | −0.0056 (13) |
C29 | 0.0421 (16) | 0.0593 (17) | 0.0580 (17) | 0.0070 (14) | −0.0062 (14) | −0.0075 (14) |
C30 | 0.067 (2) | 0.133 (3) | 0.119 (3) | 0.039 (2) | 0.010 (2) | −0.050 (3) |
C31 | 0.0336 (13) | 0.0461 (14) | 0.0349 (13) | −0.0026 (11) | 0.0030 (12) | 0.0006 (11) |
C32 | 0.0331 (13) | 0.0413 (14) | 0.0348 (13) | −0.0030 (11) | 0.0035 (11) | 0.0029 (11) |
C33 | 0.0495 (16) | 0.0463 (15) | 0.0480 (15) | 0.0070 (12) | −0.0002 (13) | −0.0058 (12) |
C34 | 0.0443 (15) | 0.0636 (18) | 0.0394 (15) | 0.0143 (14) | 0.0004 (12) | 0.0009 (13) |
C35 | 0.064 (2) | 0.127 (3) | 0.074 (2) | 0.009 (2) | 0.0146 (18) | −0.041 (2) |
C36 | 0.081 (3) | 0.230 (6) | 0.082 (3) | 0.004 (3) | 0.032 (2) | −0.061 (3) |
C37 | 0.073 (3) | 0.220 (6) | 0.075 (3) | −0.006 (3) | 0.037 (2) | 0.009 (3) |
C38 | 0.071 (2) | 0.123 (3) | 0.085 (3) | 0.004 (2) | 0.029 (2) | 0.025 (2) |
C39 | 0.065 (2) | 0.074 (2) | 0.067 (2) | 0.0103 (17) | 0.0268 (16) | 0.0103 (16) |
O1—C1 | 1.378 (3) | C15—H15 | 0.9500 |
O1—C9 | 1.383 (2) | C16—C17 | 1.364 (4) |
O2—C1 | 1.213 (3) | C16—H16 | 0.9500 |
O3—C29 | 1.380 (3) | C17—C18 | 1.374 (4) |
O3—C21 | 1.381 (3) | C17—H17 | 0.9500 |
O4—C21 | 1.206 (3) | C18—C19 | 1.388 (4) |
N1—N2 | 1.338 (2) | C18—H18 | 0.9500 |
N1—C12 | 1.360 (3) | C19—H19 | 0.9500 |
N1—C13 | 1.465 (3) | C21—C22 | 1.431 (4) |
N2—N3 | 1.319 (2) | C22—C23 | 1.337 (4) |
N3—C11 | 1.363 (3) | C22—H22 | 0.9500 |
N4—N5 | 1.345 (2) | C23—C24 | 1.459 (4) |
N4—C32 | 1.361 (3) | C23—C30 | 1.493 (4) |
N4—C33 | 1.456 (3) | C24—C29 | 1.381 (3) |
N5—N6 | 1.317 (2) | C24—C25 | 1.390 (3) |
N6—C31 | 1.363 (3) | C25—C26 | 1.374 (3) |
C1—C2 | 1.428 (3) | C25—H25 | 0.9500 |
C2—C3 | 1.341 (3) | C26—C27 | 1.401 (3) |
C2—H2 | 0.9500 | C26—H26 | 0.9500 |
C3—C4 | 1.447 (3) | C27—C28 | 1.384 (3) |
C3—C10 | 1.493 (3) | C27—C31 | 1.470 (3) |
C4—C9 | 1.387 (3) | C28—C29 | 1.375 (3) |
C4—C5 | 1.397 (3) | C28—H28 | 0.9500 |
C5—C6 | 1.373 (3) | C30—H30A | 0.9800 |
C5—H5 | 0.9500 | C30—H30B | 0.9800 |
C6—C7 | 1.397 (3) | C30—H30C | 0.9800 |
C6—H6 | 0.9500 | C31—C32 | 1.382 (3) |
C7—C8 | 1.388 (3) | C33—C34 | 1.504 (3) |
C7—C11 | 1.473 (3) | C33—H33A | 0.9900 |
C8—C9 | 1.379 (3) | C33—H33B | 0.9900 |
C8—H8 | 0.9500 | C34—C39 | 1.368 (4) |
C10—H10A | 0.9800 | C34—C35 | 1.376 (4) |
C10—H10B | 0.9800 | C35—C36 | 1.370 (5) |
C10—H10C | 0.9800 | C35—H35 | 0.9500 |
C11—C12 | 1.376 (3) | C36—C37 | 1.371 (6) |
C12—C32 | 1.464 (3) | C36—H36 | 0.9500 |
C13—C14 | 1.503 (3) | C37—C38 | 1.359 (5) |
C13—H13A | 0.9900 | C37—H37 | 0.9500 |
C13—H13B | 0.9900 | C38—C39 | 1.381 (4) |
C14—C15 | 1.371 (3) | C38—H38 | 0.9500 |
C14—C19 | 1.387 (4) | C39—H39 | 0.9500 |
C15—C16 | 1.380 (4) | ||
C1—O1—C9 | 121.08 (19) | C17—C18—C19 | 120.8 (3) |
C29—O3—C21 | 121.1 (2) | C17—C18—H18 | 119.6 |
N2—N1—C12 | 110.89 (18) | C19—C18—H18 | 119.6 |
N2—N1—C13 | 120.06 (19) | C14—C19—C18 | 119.6 (3) |
C12—N1—C13 | 129.0 (2) | C14—C19—H19 | 120.2 |
N3—N2—N1 | 107.66 (18) | C18—C19—H19 | 120.2 |
N2—N3—C11 | 108.65 (18) | O4—C21—O3 | 116.3 (3) |
N5—N4—C32 | 110.87 (18) | O4—C21—C22 | 126.7 (3) |
N5—N4—C33 | 119.52 (19) | O3—C21—C22 | 117.1 (3) |
C32—N4—C33 | 129.53 (19) | C23—C22—C21 | 123.4 (3) |
N6—N5—N4 | 107.57 (18) | C23—C22—H22 | 118.3 |
N5—N6—C31 | 108.87 (18) | C21—C22—H22 | 118.3 |
O2—C1—O1 | 116.3 (2) | C22—C23—C24 | 118.4 (3) |
O2—C1—C2 | 126.6 (2) | C22—C23—C30 | 122.1 (3) |
O1—C1—C2 | 117.2 (2) | C24—C23—C30 | 119.5 (3) |
C3—C2—C1 | 123.4 (2) | C29—C24—C25 | 117.1 (2) |
C3—C2—H2 | 118.3 | C29—C24—C23 | 118.2 (3) |
C1—C2—H2 | 118.3 | C25—C24—C23 | 124.8 (3) |
C2—C3—C4 | 118.2 (2) | C26—C25—C24 | 121.7 (2) |
C2—C3—C10 | 122.1 (2) | C26—C25—H25 | 119.2 |
C4—C3—C10 | 119.7 (2) | C24—C25—H25 | 119.2 |
C9—C4—C5 | 116.8 (2) | C25—C26—C27 | 120.1 (2) |
C9—C4—C3 | 118.6 (2) | C25—C26—H26 | 119.9 |
C5—C4—C3 | 124.5 (2) | C27—C26—H26 | 120.0 |
C6—C5—C4 | 121.3 (2) | C28—C27—C26 | 118.8 (2) |
C6—C5—H5 | 119.3 | C28—C27—C31 | 121.7 (2) |
C4—C5—H5 | 119.3 | C26—C27—C31 | 119.5 (2) |
C5—C6—C7 | 120.7 (2) | C29—C28—C27 | 119.7 (2) |
C5—C6—H6 | 119.7 | C29—C28—H28 | 120.1 |
C7—C6—H6 | 119.7 | C27—C28—H28 | 120.1 |
C8—C7—C6 | 118.9 (2) | C28—C29—O3 | 115.6 (2) |
C8—C7—C11 | 119.3 (2) | C28—C29—C24 | 122.6 (2) |
C6—C7—C11 | 121.8 (2) | O3—C29—C24 | 121.8 (2) |
C9—C8—C7 | 119.3 (2) | C23—C30—H30A | 109.5 |
C9—C8—H8 | 120.4 | C23—C30—H30B | 109.5 |
C7—C8—H8 | 120.4 | H30A—C30—H30B | 109.5 |
C8—C9—O1 | 115.8 (2) | C23—C30—H30C | 109.5 |
C8—C9—C4 | 122.9 (2) | H30A—C30—H30C | 109.5 |
O1—C9—C4 | 121.2 (2) | H30B—C30—H30C | 109.5 |
C3—C10—H10A | 109.5 | N6—C31—C32 | 108.5 (2) |
C3—C10—H10B | 109.5 | N6—C31—C27 | 120.9 (2) |
H10A—C10—H10B | 109.5 | C32—C31—C27 | 130.5 (2) |
C3—C10—H10C | 109.5 | N4—C32—C31 | 104.18 (19) |
H10A—C10—H10C | 109.5 | N4—C32—C12 | 123.2 (2) |
H10B—C10—H10C | 109.5 | C31—C32—C12 | 132.6 (2) |
N3—C11—C12 | 108.5 (2) | N4—C33—C34 | 112.85 (19) |
N3—C11—C7 | 120.9 (2) | N4—C33—H33A | 109.0 |
C12—C11—C7 | 130.6 (2) | C34—C33—H33A | 109.0 |
N1—C12—C11 | 104.33 (19) | N4—C33—H33B | 109.0 |
N1—C12—C32 | 122.06 (19) | C34—C33—H33B | 109.0 |
C11—C12—C32 | 133.6 (2) | H33A—C33—H33B | 107.8 |
N1—C13—C14 | 113.43 (19) | C39—C34—C35 | 118.4 (3) |
N1—C13—H13A | 108.9 | C39—C34—C33 | 122.8 (2) |
C14—C13—H13A | 108.9 | C35—C34—C33 | 118.7 (3) |
N1—C13—H13B | 108.9 | C36—C35—C34 | 120.2 (4) |
C14—C13—H13B | 108.9 | C36—C35—H35 | 119.9 |
H13A—C13—H13B | 107.7 | C34—C35—H35 | 119.9 |
C15—C14—C19 | 118.7 (3) | C35—C36—C37 | 120.5 (4) |
C15—C14—C13 | 119.9 (2) | C35—C36—H36 | 119.8 |
C19—C14—C13 | 121.4 (2) | C37—C36—H36 | 119.8 |
C14—C15—C16 | 121.5 (3) | C38—C37—C36 | 120.2 (4) |
C14—C15—H15 | 119.3 | C38—C37—H37 | 119.9 |
C16—C15—H15 | 119.3 | C36—C37—H37 | 119.9 |
C17—C16—C15 | 119.9 (3) | C37—C38—C39 | 119.0 (4) |
C17—C16—H16 | 120.0 | C37—C38—H38 | 120.5 |
C15—C16—H16 | 120.0 | C39—C38—H38 | 120.5 |
C16—C17—C18 | 119.5 (3) | C34—C39—C38 | 121.7 (3) |
C16—C17—H17 | 120.3 | C34—C39—H39 | 119.2 |
C18—C17—H17 | 120.3 | C38—C39—H39 | 119.2 |
C12—N1—N2—N3 | −0.4 (3) | C17—C18—C19—C14 | 0.0 (5) |
C13—N1—N2—N3 | 176.64 (19) | C29—O3—C21—O4 | 176.2 (3) |
N1—N2—N3—C11 | 0.3 (3) | C29—O3—C21—C22 | −2.8 (4) |
C32—N4—N5—N6 | 0.2 (2) | O4—C21—C22—C23 | −177.5 (4) |
C33—N4—N5—N6 | −176.94 (18) | O3—C21—C22—C23 | 1.4 (5) |
N4—N5—N6—C31 | 0.1 (2) | C21—C22—C23—C24 | 0.3 (5) |
C9—O1—C1—O2 | 175.8 (2) | C21—C22—C23—C30 | 179.2 (3) |
C9—O1—C1—C2 | −4.3 (3) | C22—C23—C24—C29 | −0.5 (4) |
O2—C1—C2—C3 | −175.8 (3) | C30—C23—C24—C29 | −179.5 (3) |
O1—C1—C2—C3 | 4.3 (4) | C22—C23—C24—C25 | 177.9 (3) |
C1—C2—C3—C4 | −0.5 (4) | C30—C23—C24—C25 | −1.1 (5) |
C1—C2—C3—C10 | 179.5 (2) | C29—C24—C25—C26 | 2.1 (4) |
C2—C3—C4—C9 | −3.3 (3) | C23—C24—C25—C26 | −176.3 (3) |
C10—C3—C4—C9 | 176.7 (2) | C24—C25—C26—C27 | −0.5 (4) |
C2—C3—C4—C5 | 177.0 (2) | C25—C26—C27—C28 | −2.1 (4) |
C10—C3—C4—C5 | −3.0 (4) | C25—C26—C27—C31 | 174.9 (2) |
C9—C4—C5—C6 | −1.6 (3) | C26—C27—C28—C29 | 3.1 (4) |
C3—C4—C5—C6 | 178.1 (2) | C31—C27—C28—C29 | −173.9 (2) |
C4—C5—C6—C7 | −0.5 (4) | C27—C28—C29—O3 | 177.0 (2) |
C5—C6—C7—C8 | 1.7 (3) | C27—C28—C29—C24 | −1.5 (4) |
C5—C6—C7—C11 | −178.3 (2) | C21—O3—C29—C28 | −175.8 (3) |
C6—C7—C8—C9 | −0.6 (3) | C21—O3—C29—C24 | 2.7 (4) |
C11—C7—C8—C9 | 179.4 (2) | C25—C24—C29—C28 | −1.1 (4) |
C7—C8—C9—O1 | 178.1 (2) | C23—C24—C29—C28 | 177.4 (3) |
C7—C8—C9—C4 | −1.7 (3) | C25—C24—C29—O3 | −179.4 (2) |
C1—O1—C9—C8 | −179.2 (2) | C23—C24—C29—O3 | −1.0 (4) |
C1—O1—C9—C4 | 0.6 (3) | N5—N6—C31—C32 | −0.3 (2) |
C5—C4—C9—C8 | 2.8 (3) | N5—N6—C31—C27 | −178.29 (19) |
C3—C4—C9—C8 | −177.0 (2) | C28—C27—C31—N6 | −168.9 (2) |
C5—C4—C9—O1 | −176.9 (2) | C26—C27—C31—N6 | 14.2 (3) |
C3—C4—C9—O1 | 3.3 (3) | C28—C27—C31—C32 | 13.6 (4) |
N2—N3—C11—C12 | −0.1 (3) | C26—C27—C31—C32 | −163.3 (2) |
N2—N3—C11—C7 | −178.5 (2) | N5—N4—C32—C31 | −0.4 (2) |
C8—C7—C11—N3 | 24.2 (3) | C33—N4—C32—C31 | 176.4 (2) |
C6—C7—C11—N3 | −155.8 (2) | N5—N4—C32—C12 | 178.81 (19) |
C8—C7—C11—C12 | −153.9 (2) | C33—N4—C32—C12 | −4.4 (3) |
C6—C7—C11—C12 | 26.2 (4) | N6—C31—C32—N4 | 0.4 (2) |
N2—N1—C12—C11 | 0.3 (2) | C27—C31—C32—N4 | 178.1 (2) |
C13—N1—C12—C11 | −176.4 (2) | N6—C31—C32—C12 | −178.6 (2) |
N2—N1—C12—C32 | −178.5 (2) | C27—C31—C32—C12 | −0.9 (4) |
C13—N1—C12—C32 | 4.8 (3) | N1—C12—C32—N4 | −96.3 (3) |
N3—C11—C12—N1 | −0.2 (2) | C11—C12—C32—N4 | 85.2 (3) |
C7—C11—C12—N1 | 178.1 (2) | N1—C12—C32—C31 | 82.6 (3) |
N3—C11—C12—C32 | 178.5 (2) | C11—C12—C32—C31 | −95.9 (3) |
C7—C11—C12—C32 | −3.3 (4) | N5—N4—C33—C34 | 86.5 (2) |
N2—N1—C13—C14 | 102.5 (2) | C32—N4—C33—C34 | −90.0 (3) |
C12—N1—C13—C14 | −81.1 (3) | N4—C33—C34—C39 | −25.5 (3) |
N1—C13—C14—C15 | 125.2 (2) | N4—C33—C34—C35 | 154.5 (2) |
N1—C13—C14—C19 | −56.2 (3) | C39—C34—C35—C36 | 0.8 (5) |
C19—C14—C15—C16 | 1.0 (4) | C33—C34—C35—C36 | −179.2 (3) |
C13—C14—C15—C16 | 179.5 (2) | C34—C35—C36—C37 | −0.8 (6) |
C14—C15—C16—C17 | 0.2 (4) | C35—C36—C37—C38 | 0.2 (7) |
C15—C16—C17—C18 | −1.3 (5) | C36—C37—C38—C39 | 0.4 (6) |
C16—C17—C18—C19 | 1.2 (5) | C35—C34—C39—C38 | −0.2 (4) |
C15—C14—C19—C18 | −1.1 (4) | C33—C34—C39—C38 | 179.8 (3) |
C13—C14—C19—C18 | −179.6 (2) | C37—C38—C39—C34 | −0.4 (5) |
D—H···A | D—H | H···A | D···A | D—H···A |
C5—H5···O2i | 0.95 | 2.45 | 3.292 (3) | 148 |
C33—H33B···O2ii | 0.99 | 2.33 | 3.307 (3) | 168 |
C10—H10C···O4iii | 0.98 | 2.52 | 3.337 (4) | 141 |
Symmetry codes: (i) x, −y+1/2, z−1/2; (ii) −x, −y+1, −z+1; (iii) x−1, y, z. |
Experimental details
Crystal data | |
Chemical formula | C38H28N6O4 |
Mr | 632.66 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 193 |
a, b, c (Å) | 12.4328 (17), 17.565 (2), 14.456 (2) |
β (°) | 94.573 (3) |
V (Å3) | 3147.0 (7) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.09 |
Crystal size (mm) | 0.36 × 0.19 × 0.06 |
Data collection | |
Diffractometer | Bruker PLATFORM diffractometer/SMART 1000 CCD area-detector |
Absorption correction | Multi-scan (SADABS; Sheldrick, 2003) |
Tmin, Tmax | 0.969, 0.995 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 21410, 5703, 3222 |
Rint | 0.074 |
(sin θ/λ)max (Å−1) | 0.600 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.048, 0.114, 1.00 |
No. of reflections | 5703 |
No. of parameters | 435 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.15, −0.16 |
Computer programs: SMART (Bruker, 1997), SAINT (Bruker, 1997), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
C5—H5···O2i | 0.95 | 2.45 | 3.292 (3) | 147.6 |
C33—H33B···O2ii | 0.99 | 2.33 | 3.307 (3) | 167.5 |
C10—H10C···O4iii | 0.98 | 2.52 | 3.337 (4) | 140.8 |
Symmetry codes: (i) x, −y+1/2, z−1/2; (ii) −x, −y+1, −z+1; (iii) x−1, y, z. |
Acknowledgements
This work was supported by the Natural Science and Engineering Research Council of Canada, the Alberta Ingenuity Centre for Carbohydrate Science and the University of Alberta.
References
Angell, Y. & Burgess, K. (2007). Angew. Chem. Int. Ed. 46, 3649–3651. Web of Science CrossRef CAS Google Scholar
Bruker (1997). SMART and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Sheldrick, G. M. (2003). SADABS University of Göttingen, Germany. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Sivakumar, K., Xie, F., Cash, B. M., Long, S., Barnhill, H. N. & Wang, Q. (2004). Org. Lett. 6, 4603–4606. Web of Science CrossRef PubMed CAS Google Scholar
Zhou, Z. & Fahrni, C. J. (2004). J. Am. Chem. Soc. 126, 8862–8863. Web of Science CrossRef PubMed CAS Google Scholar
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In our studies of new synthetic fluorophores through modification of a common fluorophore structure 4-methyl-unbelliferone (II), we generated new alkyne containing profluorophores. We subjected alkyne-modified coumarin structure (III) to conditions typical in a Sharpless–Meldal click reaction with the intention of forming the corresponding 1,2,3-triazole (IV). We explored several conditions for the synthesis of (IV), and obtained reasonable yields with (III) and benzyl azide when reacted with CuI and TEA in a methanol:water mixture. In some of these reactions we observed a minor side-product (23%) evidenced by the appearance of two doublet peaks between 4–5 ppm in the 1H NMR spectrum. These resonances were attributed to the benzylic hydrogen atoms of a bis-5,5'-triazole structure (I), and the presence of this side product was confirmed by the accompanying crystal structure data. This type of side product was first reported by Angell & Burgess (2007). Those authors reported similar observations by 1H NMR and crystallography of the bis-triazole adduct. We have identified improved conditions that avoid formation of the bis-triazole, however it is notable that commonly used conditions for click reactions may produce this type of side product.