organic compounds
N-[3-(tert-Butyldimethylsiloxymethyl)-5-nitrophenyl]acetamide
aChemistry Department, University of Auckland, Private Bag 92019, Auckland, New Zealand
*Correspondence e-mail: g.clark@auckland.ac.nz
The title compound, C15H24N2O4Si, was prepared by the reaction of (3-acetamido-5-nitrobenzyl)methanol with tert-butyldimethylsilyl chloride and is a key intermediate in the synthesis of novel nonsymmetrical DNA minor groove-binding agents. There are two independent molecules in the structure, which differ primarily in the rotation about the C—O bond next to the Si atom. Two strong N—H⋯O hydrogen bonds align the molecules into a wide ribbon extending approximately parallel to the b axis.
Related literature
For literature related to protecting groups, see: Jarowicki & Kocienski (1998); Kocienski (2004); Schelhaas & Waldmann (1996); Wetter & Oertle (1985); Wuts & Green (2006). For literature related to benzamides as minor groove binders, see: Barker et al. (2008); Gong & Yan (1997). For related literature, see: Crouch (2004); Desiraju & Steiner (1999); Nelson & Crouch (1996).
Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 1995); cell SAINT (Bruker, 1995); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEPIII (Burnett & Johnson, 1996); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).
Supporting information
10.1107/S1600536808030717/fb2117sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536808030717/fb2117Isup2.hkl
To a solution of (3-acetamido-5-nitrobenzyl)methanol (alternatively 3-acetamido-5-nitrobenzyl alcohol) (150 mg, 0.714 mmol) in dry dimethylformamide (1 ml) under an atmosphere of nitrogen, was added tert-butyldimethylsilyl chloride (129 mg. 0.856 mmol) and imidazole (146 mg, 2.14 mmol) and the mixture stirred at room temperature, under an atmosphere of nitrogen for 2 h. Water (10 ml) was added, and the aqueous solution extracted with dichloromethane (2 × 10 ml). The combined organic extracts were washed with water (20 ml) and brine (20 ml), dried (MgSO4), filtered and the solvent removed in vacuo to afford the crude product, which was purified by flash νmax (NaCl)/cm-1 3315, 2929, 1666, 1532. δH (400 MHz, CDCl3) 0.13 (6H, s, OSi(CH3)2), 0.96 (9H, s, OSiC(CH3)2), 2.24 (3H, s, NHCOCH3), 4.79 (2H, s, ArCH2O), 7.56 (1H, s, NH), 7.91 (1H, s, Ar—H), 7.93 (1H, s, Ar—H) and 8.24 (1H, s, Ar—H). δC (100 MHz, CDCl3) -5.4 (CH3, OSi(CH3)2), 18.4 (quat. OSiC(CH3)3), 24.6 (CH3, NHCOCH3), 25.9 (CH3, OSiC(CH3)3), 63.8 (CH2, ArCH2O), 112.9 (CH, Ar—C), 116.2 (CH, Ar—C), 122.4 (CH, Ar—C), 138.8 (quat. Ar—C), 144.6 (quat. Ar—C), 148.6 (quat. Ar—C) and 168.6 (C=O). m/z (CI+) 325 (MH+, 43%), 295 (M+—CH2O, 100) 267 (M+-NHCOCH3, 35), 221 (M+—C2H4N2O3, 32). Found MH+ 325.15862, C15H25N2O4Si requires 325.15836.
(19:1 dichloromethane-methanol) to afford the title compound (214 mg, 93%) as a pale yellow solid, which was recrystallized from ethyl acetate and n-hexane to give a white crystal suitable for single-crystal analysis. (mp 416–417 K).All the hydrogens were clearly discernible in the difference
Nevertheless, the hydrogens were placed in calculated positions and refined using the riding model under the conditions:. Caryl-Haryl=0.93, Cmethyl-Hmethyl=0.96, Cmethylene-Hmethylene = 0.97, N-H = 0.86 Å, Uiso(H) = 1.2Ueq(C) except for the methyl hydrogens where Uiso(H) = 1.5Ueq(C).Data collection: SMART (Bruker, 1995); cell
SAINT (Bruker, 1995); data reduction: SAINT (Bruker, 1995); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEPIII (Burnett & Johnson, 1996); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).C15H24N2O4Si | Z = 4 |
Mr = 324.45 | F(000) = 696 |
Triclinic, P1 | Dx = 1.240 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 9.5037 (3) Å | Cell parameters from 7491 reflections |
b = 10.0713 (3) Å | θ = 2.0–25.7° |
c = 18.1985 (5) Å | µ = 0.15 mm−1 |
α = 89.885 (1)° | T = 90 K |
β = 86.009 (1)° | Plate, colourless |
γ = 88.888 (1)° | 0.34 × 0.22 × 0.20 mm |
V = 1737.31 (9) Å3 |
Siemens SMART CCD diffractometer | 6570 independent reflections |
Radiation source: fine-focus sealed tube | 4732 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.042 |
ω scans | θmax = 25.7°, θmin = 2.0° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1997) | h = −11→11 |
Tmin = 0.878, Tmax = 0.977 | k = −12→12 |
15951 measured reflections | l = −22→22 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.048 | Hydrogen site location: difference Fourier map |
wR(F2) = 0.117 | H-atom parameters constrained |
S = 1.05 | w = 1/[σ2(Fo2) + (0.0481P)2 + 0.5796P] where P = (Fo2 + 2Fc2)/3 |
6570 reflections | (Δ/σ)max = 0.001 |
409 parameters | Δρmax = 0.41 e Å−3 |
0 restraints | Δρmin = −0.31 e Å−3 |
180 constraints |
C15H24N2O4Si | γ = 88.888 (1)° |
Mr = 324.45 | V = 1737.31 (9) Å3 |
Triclinic, P1 | Z = 4 |
a = 9.5037 (3) Å | Mo Kα radiation |
b = 10.0713 (3) Å | µ = 0.15 mm−1 |
c = 18.1985 (5) Å | T = 90 K |
α = 89.885 (1)° | 0.34 × 0.22 × 0.20 mm |
β = 86.009 (1)° |
Siemens SMART CCD diffractometer | 6570 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1997) | 4732 reflections with I > 2σ(I) |
Tmin = 0.878, Tmax = 0.977 | Rint = 0.042 |
15951 measured reflections |
R[F2 > 2σ(F2)] = 0.048 | 0 restraints |
wR(F2) = 0.117 | H-atom parameters constrained |
S = 1.05 | Δρmax = 0.41 e Å−3 |
6570 reflections | Δρmin = −0.31 e Å−3 |
409 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
SiA | −0.17682 (7) | 0.55743 (6) | 0.16477 (4) | 0.02135 (16) | |
O1A | 0.24286 (16) | 0.04298 (15) | 0.50611 (8) | 0.0226 (4) | |
O2A | −0.05223 (17) | −0.11050 (15) | 0.34529 (9) | 0.0266 (4) | |
O3A | −0.22213 (17) | −0.00550 (16) | 0.29506 (9) | 0.0277 (4) | |
O4A | −0.16983 (18) | 0.45572 (16) | 0.23590 (9) | 0.0289 (4) | |
N1A | 0.19067 (19) | 0.25787 (18) | 0.47613 (10) | 0.0198 (4) | |
H1A | 0.2094 | 0.3387 | 0.4864 | 0.024* | |
N2A | −0.1138 (2) | −0.00728 (18) | 0.32807 (10) | 0.0210 (4) | |
C1A | −0.0477 (2) | 0.3543 (2) | 0.33345 (12) | 0.0205 (5) | |
C2A | 0.0484 (2) | 0.3574 (2) | 0.38736 (12) | 0.0201 (5) | |
H2A | 0.0839 | 0.4386 | 0.4008 | 0.024* | |
C3A | 0.0934 (2) | 0.2417 (2) | 0.42199 (12) | 0.0182 (5) | |
C4A | 0.0406 (2) | 0.1201 (2) | 0.40215 (12) | 0.0189 (5) | |
H4A | 0.0687 | 0.0415 | 0.4242 | 0.023* | |
C5A | −0.0547 (2) | 0.1205 (2) | 0.34864 (12) | 0.0186 (5) | |
C6A | −0.1015 (2) | 0.2331 (2) | 0.31340 (12) | 0.0207 (5) | |
H6A | −0.1664 | 0.2280 | 0.2776 | 0.025* | |
C7A | −0.0922 (3) | 0.4822 (2) | 0.29796 (14) | 0.0293 (6) | |
H7A1 | −0.1500 | 0.5350 | 0.3334 | 0.035* | |
H7A2 | −0.0094 | 0.5328 | 0.2826 | 0.035* | |
C8A | 0.2593 (2) | 0.1632 (2) | 0.51459 (12) | 0.0197 (5) | |
C9A | 0.3541 (2) | 0.2174 (2) | 0.56920 (13) | 0.0234 (5) | |
H9A1 | 0.3141 | 0.2013 | 0.6182 | 0.035* | |
H9A2 | 0.3638 | 0.3112 | 0.5616 | 0.035* | |
H9A3 | 0.4451 | 0.1744 | 0.5627 | 0.035* | |
C10A | 0.0040 (3) | 0.5812 (3) | 0.12128 (17) | 0.0410 (7) | |
H10A | 0.0640 | 0.6130 | 0.1575 | 0.061* | |
H10B | 0.0004 | 0.6448 | 0.0821 | 0.061* | |
H10C | 0.0409 | 0.4980 | 0.1019 | 0.061* | |
C11A | −0.2521 (3) | 0.7202 (2) | 0.19618 (15) | 0.0353 (6) | |
H11A | −0.3412 | 0.7073 | 0.2232 | 0.053* | |
H11B | −0.2656 | 0.7758 | 0.1542 | 0.053* | |
H11C | −0.1886 | 0.7619 | 0.2274 | 0.053* | |
C12A | −0.2923 (2) | 0.4702 (2) | 0.10128 (12) | 0.0223 (5) | |
C13A | −0.3086 (3) | 0.5563 (3) | 0.03232 (14) | 0.0376 (7) | |
H13A | −0.2169 | 0.5763 | 0.0099 | 0.056* | |
H13B | −0.3581 | 0.6374 | 0.0461 | 0.056* | |
H13C | −0.3608 | 0.5088 | −0.0021 | 0.056* | |
C14A | −0.2269 (3) | 0.3351 (2) | 0.07771 (15) | 0.0329 (6) | |
H14A | −0.2887 | 0.2907 | 0.0467 | 0.049* | |
H14B | −0.2136 | 0.2820 | 0.1206 | 0.049* | |
H14C | −0.1375 | 0.3482 | 0.0511 | 0.049* | |
C15A | −0.4387 (2) | 0.4478 (3) | 0.14056 (14) | 0.0290 (6) | |
H15A | −0.4971 | 0.4032 | 0.1078 | 0.043* | |
H15B | −0.4815 | 0.5319 | 0.1547 | 0.043* | |
H15C | −0.4287 | 0.3943 | 0.1837 | 0.043* | |
SiB | 0.66924 (7) | 1.00767 (6) | 0.83117 (4) | 0.02233 (17) | |
O1B | 0.26630 (16) | 0.54068 (15) | 0.49672 (9) | 0.0252 (4) | |
O2B | 0.54486 (18) | 0.38508 (16) | 0.66784 (9) | 0.0296 (4) | |
O3B | 0.71294 (17) | 0.48319 (16) | 0.71949 (9) | 0.0279 (4) | |
O4B | 0.71134 (16) | 0.96086 (16) | 0.74525 (9) | 0.0245 (4) | |
N1B | 0.31186 (19) | 0.75499 (18) | 0.52717 (10) | 0.0190 (4) | |
H1B | 0.2892 | 0.8359 | 0.5175 | 0.023* | |
N2B | 0.6080 (2) | 0.48532 (19) | 0.68401 (10) | 0.0216 (4) | |
C1B | 0.5633 (2) | 0.8507 (2) | 0.66133 (13) | 0.0209 (5) | |
C2B | 0.4649 (2) | 0.8537 (2) | 0.60912 (12) | 0.0194 (5) | |
H2B | 0.4337 | 0.9355 | 0.5920 | 0.023* | |
C3B | 0.4107 (2) | 0.7380 (2) | 0.58106 (12) | 0.0191 (5) | |
C4B | 0.4566 (2) | 0.6150 (2) | 0.60630 (12) | 0.0197 (5) | |
H4B | 0.4221 | 0.5361 | 0.5889 | 0.024* | |
C5B | 0.5557 (2) | 0.6154 (2) | 0.65841 (13) | 0.0205 (5) | |
C6B | 0.6107 (2) | 0.7283 (2) | 0.68713 (12) | 0.0211 (5) | |
H6B | 0.6769 | 0.7230 | 0.7224 | 0.025* | |
C7B | 0.6209 (3) | 0.9803 (2) | 0.68756 (13) | 0.0262 (6) | |
H7B1 | 0.6722 | 1.0235 | 0.6466 | 0.031* | |
H7B2 | 0.5428 | 1.0385 | 0.7045 | 0.031* | |
C8B | 0.2475 (2) | 0.6608 (2) | 0.48844 (13) | 0.0206 (5) | |
C9B | 0.1529 (2) | 0.7165 (2) | 0.43247 (13) | 0.0229 (5) | |
H9B1 | 0.1964 | 0.7023 | 0.3839 | 0.034* | |
H9B2 | 0.1381 | 0.8100 | 0.4408 | 0.034* | |
H9B3 | 0.0639 | 0.6728 | 0.4371 | 0.034* | |
C10B | 0.4914 (3) | 0.9443 (3) | 0.86052 (17) | 0.0406 (7) | |
H10D | 0.4242 | 0.9766 | 0.8274 | 0.061* | |
H10E | 0.4642 | 0.9746 | 0.9095 | 0.061* | |
H10F | 0.4940 | 0.8489 | 0.8597 | 0.061* | |
C11B | 0.6654 (3) | 1.1913 (2) | 0.83711 (16) | 0.0387 (7) | |
H11D | 0.7545 | 1.2248 | 0.8179 | 0.058* | |
H11E | 0.6483 | 1.2178 | 0.8876 | 0.058* | |
H11F | 0.5916 | 1.2264 | 0.8089 | 0.058* | |
C12B | 0.8116 (3) | 0.9314 (2) | 0.88521 (13) | 0.0264 (6) | |
C13B | 0.7726 (3) | 0.9463 (3) | 0.96821 (15) | 0.0454 (8) | |
H13D | 0.8460 | 0.9072 | 0.9953 | 0.068* | |
H13E | 0.6856 | 0.9021 | 0.9807 | 0.068* | |
H13F | 0.7618 | 1.0388 | 0.9804 | 0.068* | |
C14B | 0.8295 (3) | 0.7825 (2) | 0.86699 (15) | 0.0333 (6) | |
H14D | 0.8574 | 0.7719 | 0.8156 | 0.050* | |
H14E | 0.7417 | 0.7389 | 0.8782 | 0.050* | |
H14F | 0.9007 | 0.7438 | 0.8958 | 0.050* | |
C15B | 0.9528 (3) | 0.9991 (3) | 0.86574 (16) | 0.0354 (6) | |
H15D | 1.0253 | 0.9569 | 0.8922 | 0.053* | |
H15E | 0.9448 | 1.0912 | 0.8791 | 0.053* | |
H15F | 0.9766 | 0.9914 | 0.8138 | 0.053* |
U11 | U22 | U33 | U12 | U13 | U23 | |
SiA | 0.0258 (3) | 0.0145 (3) | 0.0240 (4) | −0.0004 (3) | −0.0037 (3) | 0.0021 (3) |
O1A | 0.0285 (9) | 0.0141 (8) | 0.0259 (9) | −0.0001 (7) | −0.0061 (7) | 0.0015 (7) |
O2A | 0.0325 (9) | 0.0144 (8) | 0.0336 (10) | 0.0024 (7) | −0.0090 (8) | −0.0033 (7) |
O3A | 0.0272 (9) | 0.0239 (9) | 0.0335 (10) | −0.0010 (7) | −0.0119 (8) | −0.0038 (8) |
O4A | 0.0374 (10) | 0.0220 (9) | 0.0297 (10) | −0.0085 (8) | −0.0177 (8) | 0.0095 (7) |
N1A | 0.0242 (10) | 0.0120 (9) | 0.0239 (10) | 0.0009 (8) | −0.0057 (8) | 0.0002 (8) |
N2A | 0.0254 (11) | 0.0149 (10) | 0.0227 (11) | −0.0001 (8) | −0.0015 (9) | −0.0022 (8) |
C1A | 0.0236 (12) | 0.0175 (12) | 0.0203 (12) | −0.0015 (10) | −0.0004 (10) | 0.0016 (10) |
C2A | 0.0223 (12) | 0.0152 (11) | 0.0225 (12) | −0.0009 (9) | 0.0003 (10) | 0.0007 (10) |
C3A | 0.0189 (11) | 0.0165 (11) | 0.0188 (12) | 0.0010 (9) | −0.0005 (9) | 0.0000 (9) |
C4A | 0.0200 (11) | 0.0147 (11) | 0.0218 (12) | 0.0012 (9) | 0.0003 (10) | 0.0020 (9) |
C5A | 0.0199 (11) | 0.0156 (11) | 0.0203 (12) | −0.0020 (9) | 0.0009 (10) | −0.0043 (9) |
C6A | 0.0225 (12) | 0.0201 (12) | 0.0197 (12) | 0.0009 (10) | −0.0037 (10) | −0.0031 (10) |
C7A | 0.0385 (14) | 0.0200 (13) | 0.0315 (14) | −0.0024 (11) | −0.0166 (12) | 0.0051 (11) |
C8A | 0.0212 (12) | 0.0177 (12) | 0.0200 (12) | 0.0010 (9) | −0.0002 (10) | 0.0031 (9) |
C9A | 0.0278 (13) | 0.0166 (12) | 0.0268 (13) | −0.0029 (10) | −0.0083 (11) | 0.0038 (10) |
C10A | 0.0344 (15) | 0.0291 (15) | 0.059 (2) | −0.0062 (12) | 0.0031 (14) | −0.0046 (14) |
C11A | 0.0458 (16) | 0.0218 (14) | 0.0384 (16) | 0.0039 (12) | −0.0049 (13) | −0.0032 (12) |
C12A | 0.0279 (13) | 0.0203 (12) | 0.0192 (12) | 0.0008 (10) | −0.0039 (10) | 0.0026 (10) |
C13A | 0.0455 (17) | 0.0416 (17) | 0.0267 (14) | −0.0017 (13) | −0.0096 (13) | 0.0101 (13) |
C14A | 0.0418 (16) | 0.0252 (14) | 0.0318 (15) | −0.0010 (12) | −0.0023 (12) | −0.0050 (11) |
C15A | 0.0287 (13) | 0.0283 (14) | 0.0308 (14) | −0.0022 (11) | −0.0075 (11) | 0.0021 (11) |
SiB | 0.0263 (4) | 0.0151 (3) | 0.0256 (4) | 0.0002 (3) | −0.0016 (3) | −0.0021 (3) |
O1B | 0.0291 (9) | 0.0142 (8) | 0.0332 (10) | 0.0009 (7) | −0.0086 (8) | 0.0002 (7) |
O2B | 0.0364 (10) | 0.0172 (9) | 0.0363 (10) | −0.0019 (8) | −0.0102 (8) | 0.0038 (8) |
O3B | 0.0268 (9) | 0.0247 (9) | 0.0334 (10) | 0.0016 (7) | −0.0117 (8) | 0.0056 (8) |
O4B | 0.0281 (9) | 0.0237 (9) | 0.0227 (9) | 0.0006 (7) | −0.0085 (7) | −0.0033 (7) |
N1B | 0.0227 (10) | 0.0121 (9) | 0.0225 (10) | 0.0023 (8) | −0.0049 (8) | 0.0002 (8) |
N2B | 0.0250 (11) | 0.0179 (10) | 0.0220 (10) | 0.0011 (8) | −0.0027 (9) | 0.0026 (8) |
C1B | 0.0237 (12) | 0.0167 (12) | 0.0220 (12) | 0.0002 (10) | 0.0006 (10) | −0.0009 (10) |
C2B | 0.0218 (12) | 0.0142 (11) | 0.0219 (12) | 0.0024 (9) | 0.0007 (10) | 0.0021 (9) |
C3B | 0.0191 (11) | 0.0175 (12) | 0.0206 (12) | 0.0009 (9) | −0.0004 (10) | 0.0001 (10) |
C4B | 0.0213 (12) | 0.0136 (11) | 0.0237 (12) | −0.0005 (9) | 0.0015 (10) | −0.0009 (9) |
C5B | 0.0223 (12) | 0.0164 (12) | 0.0227 (12) | 0.0021 (9) | −0.0006 (10) | 0.0022 (10) |
C6B | 0.0222 (12) | 0.0217 (12) | 0.0191 (12) | 0.0010 (10) | −0.0006 (10) | −0.0001 (10) |
C7B | 0.0309 (13) | 0.0201 (12) | 0.0286 (14) | −0.0012 (10) | −0.0095 (11) | −0.0005 (10) |
C8B | 0.0200 (12) | 0.0185 (12) | 0.0227 (12) | 0.0010 (10) | 0.0013 (10) | −0.0031 (10) |
C9B | 0.0266 (12) | 0.0159 (12) | 0.0265 (13) | 0.0017 (10) | −0.0055 (10) | −0.0018 (10) |
C10B | 0.0348 (15) | 0.0322 (15) | 0.0533 (19) | 0.0004 (12) | 0.0063 (14) | −0.0005 (14) |
C11B | 0.0473 (17) | 0.0226 (14) | 0.0481 (18) | 0.0031 (12) | −0.0172 (14) | −0.0052 (13) |
C12B | 0.0353 (14) | 0.0226 (13) | 0.0215 (13) | 0.0013 (11) | −0.0043 (11) | −0.0016 (10) |
C13B | 0.069 (2) | 0.0412 (18) | 0.0267 (15) | 0.0057 (15) | −0.0072 (14) | −0.0018 (13) |
C14B | 0.0413 (16) | 0.0208 (13) | 0.0387 (16) | 0.0056 (12) | −0.0108 (13) | 0.0004 (12) |
C15B | 0.0305 (14) | 0.0329 (15) | 0.0439 (17) | −0.0011 (12) | −0.0106 (12) | 0.0007 (13) |
SiA—O4A | 1.6533 (16) | SiB—O4B | 1.6540 (17) |
SiA—C11A | 1.851 (3) | SiB—C11B | 1.852 (3) |
SiA—C10A | 1.861 (3) | SiB—C10B | 1.862 (3) |
SiA—C12A | 1.879 (2) | SiB—C12B | 1.879 (2) |
O1A—C8A | 1.235 (3) | O1B—C8B | 1.230 (3) |
O2A—N2A | 1.233 (2) | O2B—N2B | 1.231 (2) |
O3A—N2A | 1.228 (2) | O3B—N2B | 1.225 (2) |
O4A—C7A | 1.420 (3) | O4B—C7B | 1.414 (3) |
N1A—C8A | 1.364 (3) | N1B—C8B | 1.362 (3) |
N1A—C3A | 1.409 (3) | N1B—C3B | 1.412 (3) |
N1A—H1A | 0.8600 | N1B—H1B | 0.8600 |
N2A—C5A | 1.473 (3) | N2B—C5B | 1.478 (3) |
C1A—C2A | 1.387 (3) | C1B—C2B | 1.378 (3) |
C1A—C6A | 1.392 (3) | C1B—C6B | 1.396 (3) |
C1A—C7A | 1.507 (3) | C1B—C7B | 1.515 (3) |
C2A—C3A | 1.398 (3) | C2B—C3B | 1.395 (3) |
C2A—H2A | 0.9300 | C2B—H2B | 0.9300 |
C3A—C4A | 1.390 (3) | C3B—C4B | 1.393 (3) |
C4A—C5A | 1.375 (3) | C4B—C5B | 1.382 (3) |
C4A—H4A | 0.9300 | C4B—H4B | 0.9300 |
C5A—C6A | 1.383 (3) | C5B—C6B | 1.379 (3) |
C6A—H6A | 0.9300 | C6B—H6B | 0.9300 |
C7A—H7A1 | 0.9700 | C7B—H7B1 | 0.9700 |
C7A—H7A2 | 0.9700 | C7B—H7B2 | 0.9700 |
C8A—C9A | 1.498 (3) | C8B—C9B | 1.505 (3) |
C9A—H9A1 | 0.9600 | C9B—H9B1 | 0.9600 |
C9A—H9A2 | 0.9600 | C9B—H9B2 | 0.9600 |
C9A—H9A3 | 0.9600 | C9B—H9B3 | 0.9600 |
C10A—H10A | 0.9600 | C10B—H10D | 0.9600 |
C10A—H10B | 0.9600 | C10B—H10E | 0.9600 |
C10A—H10C | 0.9600 | C10B—H10F | 0.9600 |
C11A—H11A | 0.9600 | C11B—H11D | 0.9600 |
C11A—H11B | 0.9600 | C11B—H11E | 0.9600 |
C11A—H11C | 0.9600 | C11B—H11F | 0.9600 |
C12A—C14A | 1.534 (3) | C12B—C15B | 1.535 (4) |
C12A—C13A | 1.539 (3) | C12B—C13B | 1.537 (4) |
C12A—C15A | 1.540 (3) | C12B—C14B | 1.541 (3) |
C13A—H13A | 0.9600 | C13B—H13D | 0.9600 |
C13A—H13B | 0.9600 | C13B—H13E | 0.9600 |
C13A—H13C | 0.9600 | C13B—H13F | 0.9600 |
C14A—H14A | 0.9600 | C14B—H14D | 0.9600 |
C14A—H14B | 0.9600 | C14B—H14E | 0.9600 |
C14A—H14C | 0.9600 | C14B—H14F | 0.9600 |
C15A—H15A | 0.9600 | C15B—H15D | 0.9600 |
C15A—H15B | 0.9600 | C15B—H15E | 0.9600 |
C15A—H15C | 0.9600 | C15B—H15F | 0.9600 |
O4A—SiA—C11A | 109.65 (11) | O4B—SiB—C11B | 109.84 (11) |
O4A—SiA—C10A | 109.68 (11) | O4B—SiB—C10B | 108.94 (12) |
C11A—SiA—C10A | 109.21 (13) | C11B—SiB—C10B | 109.21 (13) |
O4A—SiA—C12A | 104.02 (9) | O4B—SiB—C12B | 104.37 (10) |
C11A—SiA—C12A | 112.45 (11) | C11B—SiB—C12B | 111.97 (12) |
C10A—SiA—C12A | 111.70 (12) | C10B—SiB—C12B | 112.37 (12) |
C7A—O4A—SiA | 123.43 (15) | C7B—O4B—SiB | 123.18 (15) |
C8A—N1A—C3A | 129.01 (19) | C8B—N1B—C3B | 128.91 (19) |
C8A—N1A—H1A | 115.5 | C8B—N1B—H1B | 115.5 |
C3A—N1A—H1A | 115.5 | C3B—N1B—H1B | 115.5 |
O3A—N2A—O2A | 123.41 (19) | O3B—N2B—O2B | 123.62 (18) |
O3A—N2A—C5A | 118.28 (17) | O3B—N2B—C5B | 118.09 (19) |
O2A—N2A—C5A | 118.31 (18) | O2B—N2B—C5B | 118.28 (18) |
C2A—C1A—C6A | 119.3 (2) | C2B—C1B—C6B | 119.2 (2) |
C2A—C1A—C7A | 119.4 (2) | C2B—C1B—C7B | 119.2 (2) |
C6A—C1A—C7A | 121.3 (2) | C6B—C1B—C7B | 121.6 (2) |
C1A—C2A—C3A | 121.7 (2) | C1B—C2B—C3B | 122.1 (2) |
C1A—C2A—H2A | 119.1 | C1B—C2B—H2B | 118.9 |
C3A—C2A—H2A | 119.1 | C3B—C2B—H2B | 118.9 |
C4A—C3A—C2A | 119.3 (2) | C4B—C3B—C2B | 119.4 (2) |
C4A—C3A—N1A | 124.29 (19) | C4B—C3B—N1B | 124.2 (2) |
C2A—C3A—N1A | 116.4 (2) | C2B—C3B—N1B | 116.38 (19) |
C5A—C4A—C3A | 117.5 (2) | C5B—C4B—C3B | 117.0 (2) |
C5A—C4A—H4A | 121.3 | C5B—C4B—H4B | 121.5 |
C3A—C4A—H4A | 121.3 | C3B—C4B—H4B | 121.5 |
C4A—C5A—C6A | 124.6 (2) | C6B—C5B—C4B | 124.7 (2) |
C4A—C5A—N2A | 118.10 (19) | C6B—C5B—N2B | 117.9 (2) |
C6A—C5A—N2A | 117.30 (19) | C4B—C5B—N2B | 117.5 (2) |
C5A—C6A—C1A | 117.5 (2) | C5B—C6B—C1B | 117.5 (2) |
C5A—C6A—H6A | 121.2 | C5B—C6B—H6B | 121.2 |
C1A—C6A—H6A | 121.2 | C1B—C6B—H6B | 121.2 |
O4A—C7A—C1A | 110.39 (19) | O4B—C7B—C1B | 112.15 (19) |
O4A—C7A—H7A1 | 109.6 | O4B—C7B—H7B1 | 109.2 |
C1A—C7A—H7A1 | 109.6 | C1B—C7B—H7B1 | 109.2 |
O4A—C7A—H7A2 | 109.6 | O4B—C7B—H7B2 | 109.2 |
C1A—C7A—H7A2 | 109.6 | C1B—C7B—H7B2 | 109.2 |
H7A1—C7A—H7A2 | 108.1 | H7B1—C7B—H7B2 | 107.9 |
O1A—C8A—N1A | 122.9 (2) | O1B—C8B—N1B | 123.7 (2) |
O1A—C8A—C9A | 122.75 (19) | O1B—C8B—C9B | 122.3 (2) |
N1A—C8A—C9A | 114.29 (19) | N1B—C8B—C9B | 114.01 (19) |
C8A—C9A—H9A1 | 109.5 | C8B—C9B—H9B1 | 109.5 |
C8A—C9A—H9A2 | 109.5 | C8B—C9B—H9B2 | 109.5 |
H9A1—C9A—H9A2 | 109.5 | H9B1—C9B—H9B2 | 109.5 |
C8A—C9A—H9A3 | 109.5 | C8B—C9B—H9B3 | 109.5 |
H9A1—C9A—H9A3 | 109.5 | H9B1—C9B—H9B3 | 109.5 |
H9A2—C9A—H9A3 | 109.5 | H9B2—C9B—H9B3 | 109.5 |
SiA—C10A—H10A | 109.5 | SiB—C10B—H10D | 109.5 |
SiA—C10A—H10B | 109.5 | SiB—C10B—H10E | 109.5 |
H10A—C10A—H10B | 109.5 | H10D—C10B—H10E | 109.5 |
SiA—C10A—H10C | 109.5 | SiB—C10B—H10F | 109.5 |
H10A—C10A—H10C | 109.5 | H10D—C10B—H10F | 109.5 |
H10B—C10A—H10C | 109.5 | H10E—C10B—H10F | 109.5 |
SiA—C11A—H11A | 109.5 | SiB—C11B—H11D | 109.5 |
SiA—C11A—H11B | 109.5 | SiB—C11B—H11E | 109.5 |
H11A—C11A—H11B | 109.5 | H11D—C11B—H11E | 109.5 |
SiA—C11A—H11C | 109.5 | SiB—C11B—H11F | 109.5 |
H11A—C11A—H11C | 109.5 | H11D—C11B—H11F | 109.5 |
H11B—C11A—H11C | 109.5 | H11E—C11B—H11F | 109.5 |
C14A—C12A—C13A | 109.0 (2) | C15B—C12B—C13B | 109.3 (2) |
C14A—C12A—C15A | 108.7 (2) | C15B—C12B—C14B | 108.4 (2) |
C13A—C12A—C15A | 109.36 (19) | C13B—C12B—C14B | 108.6 (2) |
C14A—C12A—SiA | 110.59 (16) | C15B—C12B—SiB | 110.34 (17) |
C13A—C12A—SiA | 109.21 (17) | C13B—C12B—SiB | 110.11 (18) |
C15A—C12A—SiA | 109.89 (16) | C14B—C12B—SiB | 110.04 (17) |
C12A—C13A—H13A | 109.5 | C12B—C13B—H13D | 109.5 |
C12A—C13A—H13B | 109.5 | C12B—C13B—H13E | 109.5 |
H13A—C13A—H13B | 109.5 | H13D—C13B—H13E | 109.5 |
C12A—C13A—H13C | 109.5 | C12B—C13B—H13F | 109.5 |
H13A—C13A—H13C | 109.5 | H13D—C13B—H13F | 109.5 |
H13B—C13A—H13C | 109.5 | H13E—C13B—H13F | 109.5 |
C12A—C14A—H14A | 109.5 | C12B—C14B—H14D | 109.5 |
C12A—C14A—H14B | 109.5 | C12B—C14B—H14E | 109.5 |
H14A—C14A—H14B | 109.5 | H14D—C14B—H14E | 109.5 |
C12A—C14A—H14C | 109.5 | C12B—C14B—H14F | 109.5 |
H14A—C14A—H14C | 109.5 | H14D—C14B—H14F | 109.5 |
H14B—C14A—H14C | 109.5 | H14E—C14B—H14F | 109.5 |
C12A—C15A—H15A | 109.5 | C12B—C15B—H15D | 109.5 |
C12A—C15A—H15B | 109.5 | C12B—C15B—H15E | 109.5 |
H15A—C15A—H15B | 109.5 | H15D—C15B—H15E | 109.5 |
C12A—C15A—H15C | 109.5 | C12B—C15B—H15F | 109.5 |
H15A—C15A—H15C | 109.5 | H15D—C15B—H15F | 109.5 |
H15B—C15A—H15C | 109.5 | H15E—C15B—H15F | 109.5 |
D—H···A | D—H | H···A | D···A | D—H···A |
N1A—H1A···O1B | 0.86 | 2.13 | 2.982 (2) | 172 |
N1B—H1B···O1Ai | 0.86 | 2.14 | 2.991 (2) | 173 |
Symmetry code: (i) x, y+1, z. |
Experimental details
Crystal data | |
Chemical formula | C15H24N2O4Si |
Mr | 324.45 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 90 |
a, b, c (Å) | 9.5037 (3), 10.0713 (3), 18.1985 (5) |
α, β, γ (°) | 89.885 (1), 86.009 (1), 88.888 (1) |
V (Å3) | 1737.31 (9) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.15 |
Crystal size (mm) | 0.34 × 0.22 × 0.20 |
Data collection | |
Diffractometer | Siemens SMART CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1997) |
Tmin, Tmax | 0.878, 0.977 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 15951, 6570, 4732 |
Rint | 0.042 |
(sin θ/λ)max (Å−1) | 0.610 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.048, 0.117, 1.05 |
No. of reflections | 6570 |
No. of parameters | 409 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.41, −0.31 |
Computer programs: SMART (Bruker, 1995), SAINT (Bruker, 1995), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEPIII (Burnett & Johnson, 1996), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
N1A—H1A···O1B | 0.86 | 2.13 | 2.982 (2) | 172.3 |
N1B—H1B···O1Ai | 0.86 | 2.14 | 2.991 (2) | 172.9 |
Symmetry code: (i) x, y+1, z. |
Acknowledgements
The authors acknowledge financial support from the Higher Education Commission of Pakistan and The University of Auckland, New Zealand.
References
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Due to the nucleophilic nature of benzylic hydroxyl groups these are usually protected during multi-step organic synthesis (Barker et al., 2008). Large numbers of protecting groups are reported including a variety of silyl ethers. Among the silyl ethers, the tert-butyldimethylsilyl ether is widely used due to it stability towards oxidative, reductive, and mild acidic and basic conditions (Jarowicki & Kocienski, 1998; Kocienski, 2004; Schelhaas & Waldmann, 1996; Wetter & Oertle, 1985; Wuts & Green, 2006). It can however be easily deprotected to give the parent hydroxyl group efficiently using different fluoride reagents without affecting other functionalities (Crouch, 2004; Nelson & Crouch, 1996). The asymmetric unit contains two independent molecules which differ primarily in the rotation about the C7 - O4 bond. (Torsion angles C1-C7-O4-Si equal to -152.75, -110.21° for molecules A and B respectively). Two strong N-H···O hydrogen bonds (Desiraju & Steiner, 1999; Tab. 1) align the molecules into wide ribbons extending approximately parallel to the b axis. There are four very close intramolecular contacts (C4A-O1A 2.886 (3), C4B-O1B 2.894 (3), C6A-O4A 2.740 (3) and C6B-O4B 2.785 Å).