organic compounds
2,6-Dimethyl-4-m-tolylcyclohex-3-enecarboxylic acid
aDepartment of Natural Information and Mathematical Sciences, Indiana University Kokomo, Kokomo, IN 46904-9003, USA, and bIndiana University Molecular Structure Center, Indiana University, Bloomington, IN 47405-7102, USA
*Correspondence e-mail: soxie@iuk.edu
The title compound, C16H20O2, was synthesized to study the hydrogen-bonding interaction of the two enantiomers in the solid state. The racemate is made up of carboxylic acid RS dimers. Intermolecular O—H⋯O hydrogen bonds produce centrosymmetric R22(8) rings which dimerize the two chiral enantiomers through their carboxyl groups. The of this compound is generated by the presence of the double bond in the cyclohexene ring and a chiral axis due to the meta-methyl substituent on the aromatic ring.
Related literature
In similar compounds previously reported (Xie et al., 2002, 2007a, 2008), the racemates also consist of carboxylic acid RS dimers. For related literature, see: Xie et al. (2007b, 2004); Bernstein et al. (1995).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2007); cell SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SIR2004 (Burla et al., 2005); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536808027542/om2254sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536808027542/om2254Isup2.hkl
The title carboxylic acid was synthesized following the similar method reported by Xie et al., 2002. The purified compound was recrystallized from hexane-dichloromethane as colorless plates (m.p. 412–415 K).
The hydrogen atoms not involved in hydrogen bonding were placed in idealized positions and refined as riding atoms with relative isotropic displacement parameters; they were positioned geometrically and refined using a riding model with C—H = 0.95 Å and Uiso(H) = 1.2 times Ueq(C). H1O was refined freely with individual displacement parameters.
Data collection: APEX2 (Bruker, 2007); cell
SAINT (Bruker, 2007); data reduction: SAINT (Bruker, 2007); program(s) used to solve structure: SIR2004 (Burla et al., 2005); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. The molecular structure and atom numbering scheme. | |
Fig. 2. Hydrogen bonded dimer. Dashed lines represent hydrogen bonds. [Symmetry code: #1 -x + 1, -y, -z + 1.] |
C16H20O2 | F(000) = 1056 |
Mr = 244.32 | Dx = 1.191 Mg m−3 |
Orthorhombic, Pbca | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ac 2ab | Cell parameters from 3951 reflections |
a = 11.2581 (10) Å | θ = 3.2–25.9° |
b = 8.1055 (7) Å | µ = 0.08 mm−1 |
c = 29.857 (3) Å | T = 150 K |
V = 2724.5 (4) Å3 | Plate, colorless |
Z = 8 | 0.20 × 0.18 × 0.05 mm |
Bruker Kappa APEXII diffractometer | 3120 independent reflections |
Radiation source: fine-focus sealed tube | 2265 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.043 |
Detector resolution: 8.3 pixels mm-1 | θmax = 27.5°, θmin = 1.4° |
ω and ϕ scans | h = −14→12 |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | k = −10→10 |
Tmin = 0.985, Tmax = 0.996 | l = −38→36 |
18515 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.049 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.136 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | w = 1/[σ2(Fo2) + (0.066P)2 + 0.9686P] where P = (Fo2 + 2Fc2)/3 |
3120 reflections | (Δ/σ)max < 0.001 |
170 parameters | Δρmax = 0.50 e Å−3 |
0 restraints | Δρmin = −0.20 e Å−3 |
C16H20O2 | V = 2724.5 (4) Å3 |
Mr = 244.32 | Z = 8 |
Orthorhombic, Pbca | Mo Kα radiation |
a = 11.2581 (10) Å | µ = 0.08 mm−1 |
b = 8.1055 (7) Å | T = 150 K |
c = 29.857 (3) Å | 0.20 × 0.18 × 0.05 mm |
Bruker Kappa APEXII diffractometer | 3120 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 2265 reflections with I > 2σ(I) |
Tmin = 0.985, Tmax = 0.996 | Rint = 0.043 |
18515 measured reflections |
R[F2 > 2σ(F2)] = 0.049 | 0 restraints |
wR(F2) = 0.136 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | Δρmax = 0.50 e Å−3 |
3120 reflections | Δρmin = −0.20 e Å−3 |
170 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.47404 (12) | 0.21830 (16) | 0.50798 (4) | 0.0403 (3) | |
H1O | 0.477 (3) | 0.103 (4) | 0.5238 (11) | 0.113 (11)* | |
O2 | 0.51225 (11) | 0.06571 (15) | 0.44750 (4) | 0.0362 (3) | |
C1 | 0.56818 (15) | 0.5618 (2) | 0.38758 (6) | 0.0333 (4) | |
H1A | 0.5723 | 0.6504 | 0.4104 | 0.040* | |
H1B | 0.6339 | 0.5799 | 0.3661 | 0.040* | |
C2 | 0.58687 (14) | 0.3953 (2) | 0.41086 (6) | 0.0308 (4) | |
H2 | 0.5978 | 0.3087 | 0.3873 | 0.037* | |
C3 | 0.47402 (14) | 0.3553 (2) | 0.43738 (5) | 0.0274 (4) | |
H3 | 0.4578 | 0.4494 | 0.4582 | 0.033* | |
C4 | 0.36497 (13) | 0.3349 (2) | 0.40608 (5) | 0.0272 (3) | |
H4 | 0.3711 | 0.2262 | 0.3904 | 0.033* | |
C5 | 0.36254 (14) | 0.4705 (2) | 0.37130 (6) | 0.0309 (4) | |
H5 | 0.2923 | 0.4822 | 0.3540 | 0.037* | |
C6 | 0.45258 (14) | 0.57605 (19) | 0.36300 (5) | 0.0262 (3) | |
C7 | 0.43895 (13) | 0.7170 (2) | 0.33124 (5) | 0.0282 (4) | |
C8 | 0.37328 (15) | 0.7010 (2) | 0.29151 (5) | 0.0316 (4) | |
H8 | 0.3374 | 0.5979 | 0.2846 | 0.038* | |
C9 | 0.35932 (15) | 0.8328 (2) | 0.26180 (6) | 0.0354 (4) | |
C10 | 0.41173 (16) | 0.9834 (2) | 0.27251 (7) | 0.0413 (5) | |
H10 | 0.4038 | 1.0740 | 0.2525 | 0.050* | |
C11 | 0.47524 (17) | 1.0027 (2) | 0.31192 (7) | 0.0421 (5) | |
H11 | 0.5088 | 1.1070 | 0.3191 | 0.051* | |
C12 | 0.49008 (15) | 0.8706 (2) | 0.34103 (6) | 0.0351 (4) | |
H12 | 0.5351 | 0.8843 | 0.3677 | 0.042* | |
C13 | 0.69806 (14) | 0.4001 (2) | 0.43992 (6) | 0.0360 (4) | |
H13A | 0.7662 | 0.4336 | 0.4216 | 0.054* | |
H13B | 0.7127 | 0.2903 | 0.4525 | 0.054* | |
H13C | 0.6868 | 0.4795 | 0.4643 | 0.054* | |
C14 | 0.48878 (13) | 0.2002 (2) | 0.46525 (6) | 0.0284 (4) | |
C15 | 0.25044 (15) | 0.3372 (2) | 0.43369 (6) | 0.0333 (4) | |
H15A | 0.1820 | 0.3237 | 0.4137 | 0.050* | |
H15B | 0.2440 | 0.4427 | 0.4496 | 0.050* | |
H15C | 0.2520 | 0.2468 | 0.4555 | 0.050* | |
C16 | 0.2881 (2) | 0.8129 (3) | 0.21924 (6) | 0.0483 (5) | |
H16A | 0.2877 | 0.6965 | 0.2103 | 0.072* | |
H16B | 0.3240 | 0.8793 | 0.1954 | 0.072* | |
H16C | 0.2064 | 0.8500 | 0.2244 | 0.072* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0541 (8) | 0.0364 (7) | 0.0303 (7) | 0.0076 (6) | 0.0021 (6) | 0.0048 (6) |
O2 | 0.0399 (6) | 0.0362 (7) | 0.0327 (7) | 0.0045 (5) | 0.0002 (5) | 0.0041 (5) |
C1 | 0.0313 (8) | 0.0340 (9) | 0.0346 (9) | −0.0030 (7) | 0.0007 (7) | 0.0049 (7) |
C2 | 0.0261 (8) | 0.0334 (9) | 0.0330 (9) | −0.0012 (6) | −0.0007 (7) | 0.0037 (7) |
C3 | 0.0260 (7) | 0.0288 (8) | 0.0273 (8) | 0.0012 (6) | 0.0000 (6) | 0.0012 (7) |
C4 | 0.0251 (7) | 0.0273 (8) | 0.0292 (8) | −0.0019 (6) | −0.0039 (6) | 0.0038 (7) |
C5 | 0.0287 (8) | 0.0330 (9) | 0.0310 (9) | 0.0013 (6) | −0.0041 (7) | 0.0052 (7) |
C6 | 0.0298 (7) | 0.0267 (8) | 0.0222 (8) | 0.0020 (6) | 0.0022 (6) | −0.0003 (6) |
C7 | 0.0275 (7) | 0.0306 (8) | 0.0264 (8) | 0.0031 (6) | 0.0068 (6) | 0.0046 (7) |
C8 | 0.0346 (8) | 0.0319 (9) | 0.0282 (8) | 0.0042 (7) | 0.0046 (7) | 0.0032 (7) |
C9 | 0.0339 (8) | 0.0419 (10) | 0.0305 (9) | 0.0081 (7) | 0.0059 (7) | 0.0096 (8) |
C10 | 0.0366 (9) | 0.0398 (10) | 0.0474 (11) | 0.0026 (8) | 0.0077 (8) | 0.0184 (9) |
C11 | 0.0384 (9) | 0.0328 (9) | 0.0551 (12) | −0.0057 (8) | 0.0049 (9) | 0.0107 (9) |
C12 | 0.0329 (8) | 0.0356 (9) | 0.0368 (9) | −0.0041 (7) | 0.0029 (7) | 0.0054 (8) |
C13 | 0.0257 (8) | 0.0414 (10) | 0.0410 (10) | −0.0020 (7) | −0.0027 (7) | 0.0061 (8) |
C14 | 0.0199 (7) | 0.0289 (8) | 0.0365 (9) | 0.0000 (6) | −0.0029 (6) | 0.0017 (7) |
C15 | 0.0293 (8) | 0.0363 (9) | 0.0344 (9) | 0.0007 (7) | −0.0020 (7) | 0.0023 (7) |
C16 | 0.0602 (12) | 0.0509 (12) | 0.0338 (10) | 0.0090 (10) | −0.0029 (9) | 0.0125 (9) |
O1—C14 | 1.295 (2) | C7—C8 | 1.404 (2) |
O1—H1O | 1.05 (3) | C8—C9 | 1.398 (2) |
O2—C14 | 1.241 (2) | C8—H8 | 0.9500 |
C1—C6 | 1.499 (2) | C9—C10 | 1.393 (3) |
C1—C2 | 1.533 (2) | C9—C16 | 1.511 (3) |
C1—H1A | 0.9900 | C10—C11 | 1.386 (3) |
C1—H1B | 0.9900 | C10—H10 | 0.9500 |
C2—C13 | 1.524 (2) | C11—C12 | 1.390 (3) |
C2—C3 | 1.532 (2) | C11—H11 | 0.9500 |
C2—H2 | 1.0000 | C12—H12 | 0.9500 |
C3—C14 | 1.517 (2) | C13—H13A | 0.9800 |
C3—C4 | 1.552 (2) | C13—H13B | 0.9800 |
C3—H3 | 1.0000 | C13—H13C | 0.9800 |
C4—C5 | 1.512 (2) | C15—H15A | 0.9800 |
C4—C15 | 1.530 (2) | C15—H15B | 0.9800 |
C4—H4 | 1.0000 | C15—H15C | 0.9800 |
C5—C6 | 1.349 (2) | C16—H16A | 0.9800 |
C5—H5 | 0.9500 | C16—H16B | 0.9800 |
C6—C7 | 1.493 (2) | C16—H16C | 0.9800 |
C7—C12 | 1.402 (2) | ||
C14—O1—H1O | 109.7 (18) | C9—C8—H8 | 119.2 |
C6—C1—C2 | 114.13 (13) | C7—C8—H8 | 119.2 |
C6—C1—H1A | 108.7 | C10—C9—C8 | 118.46 (16) |
C2—C1—H1A | 108.7 | C10—C9—C16 | 120.77 (16) |
C6—C1—H1B | 108.7 | C8—C9—C16 | 120.77 (17) |
C2—C1—H1B | 108.7 | C11—C10—C9 | 120.85 (16) |
H1A—C1—H1B | 107.6 | C11—C10—H10 | 119.6 |
C13—C2—C3 | 113.10 (14) | C9—C10—H10 | 119.6 |
C13—C2—C1 | 110.39 (14) | C10—C11—C12 | 120.39 (18) |
C3—C2—C1 | 107.85 (13) | C10—C11—H11 | 119.8 |
C13—C2—H2 | 108.5 | C12—C11—H11 | 119.8 |
C3—C2—H2 | 108.5 | C11—C12—C7 | 120.30 (17) |
C1—C2—H2 | 108.5 | C11—C12—H12 | 119.9 |
C14—C3—C2 | 111.58 (13) | C7—C12—H12 | 119.9 |
C14—C3—C4 | 109.18 (13) | C2—C13—H13A | 109.5 |
C2—C3—C4 | 111.55 (13) | C2—C13—H13B | 109.5 |
C14—C3—H3 | 108.1 | H13A—C13—H13B | 109.5 |
C2—C3—H3 | 108.1 | C2—C13—H13C | 109.5 |
C4—C3—H3 | 108.1 | H13A—C13—H13C | 109.5 |
C5—C4—C15 | 110.23 (13) | H13B—C13—H13C | 109.5 |
C5—C4—C3 | 110.51 (13) | O2—C14—O1 | 123.21 (15) |
C15—C4—C3 | 109.93 (13) | O2—C14—C3 | 121.15 (15) |
C5—C4—H4 | 108.7 | O1—C14—C3 | 115.63 (15) |
C15—C4—H4 | 108.7 | C4—C15—H15A | 109.5 |
C3—C4—H4 | 108.7 | C4—C15—H15B | 109.5 |
C6—C5—C4 | 124.97 (14) | H15A—C15—H15B | 109.5 |
C6—C5—H5 | 117.5 | C4—C15—H15C | 109.5 |
C4—C5—H5 | 117.5 | H15A—C15—H15C | 109.5 |
C5—C6—C7 | 121.65 (14) | H15B—C15—H15C | 109.5 |
C5—C6—C1 | 120.91 (14) | C9—C16—H16A | 109.5 |
C7—C6—C1 | 117.33 (13) | C9—C16—H16B | 109.5 |
C12—C7—C8 | 118.32 (15) | H16A—C16—H16B | 109.5 |
C12—C7—C6 | 120.32 (15) | C9—C16—H16C | 109.5 |
C8—C7—C6 | 121.34 (15) | H16A—C16—H16C | 109.5 |
C9—C8—C7 | 121.65 (16) | H16B—C16—H16C | 109.5 |
C6—C1—C2—C13 | −172.47 (14) | C1—C6—C7—C12 | −35.8 (2) |
C6—C1—C2—C3 | −48.44 (19) | C5—C6—C7—C8 | −38.1 (2) |
C13—C2—C3—C14 | −52.09 (19) | C1—C6—C7—C8 | 145.50 (15) |
C1—C2—C3—C14 | −174.45 (14) | C12—C7—C8—C9 | 0.7 (2) |
C13—C2—C3—C4 | −174.51 (14) | C6—C7—C8—C9 | 179.46 (15) |
C1—C2—C3—C4 | 63.12 (17) | C7—C8—C9—C10 | −0.4 (2) |
C14—C3—C4—C5 | −168.20 (13) | C7—C8—C9—C16 | −179.91 (16) |
C2—C3—C4—C5 | −44.41 (18) | C8—C9—C10—C11 | −0.7 (3) |
C14—C3—C4—C15 | 69.91 (17) | C16—C9—C10—C11 | 178.81 (18) |
C2—C3—C4—C15 | −166.30 (13) | C9—C10—C11—C12 | 1.5 (3) |
C15—C4—C5—C6 | 133.15 (17) | C10—C11—C12—C7 | −1.2 (3) |
C3—C4—C5—C6 | 11.4 (2) | C8—C7—C12—C11 | 0.1 (2) |
C4—C5—C6—C7 | −173.87 (15) | C6—C7—C12—C11 | −178.63 (15) |
C4—C5—C6—C1 | 2.4 (3) | C2—C3—C14—O2 | −59.64 (19) |
C2—C1—C6—C5 | 17.0 (2) | C4—C3—C14—O2 | 64.14 (18) |
C2—C1—C6—C7 | −166.55 (14) | C2—C3—C14—O1 | 121.08 (15) |
C5—C6—C7—C12 | 140.62 (17) | C4—C3—C14—O1 | −115.15 (15) |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1O···O2i | 1.05 (3) | 1.62 (3) | 2.6628 (18) | 174 (3) |
Symmetry code: (i) −x+1, −y, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C16H20O2 |
Mr | 244.32 |
Crystal system, space group | Orthorhombic, Pbca |
Temperature (K) | 150 |
a, b, c (Å) | 11.2581 (10), 8.1055 (7), 29.857 (3) |
V (Å3) | 2724.5 (4) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 0.08 |
Crystal size (mm) | 0.20 × 0.18 × 0.05 |
Data collection | |
Diffractometer | Bruker Kappa APEXII diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.985, 0.996 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 18515, 3120, 2265 |
Rint | 0.043 |
(sin θ/λ)max (Å−1) | 0.649 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.049, 0.136, 1.03 |
No. of reflections | 3120 |
No. of parameters | 170 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.50, −0.20 |
Computer programs: APEX2 (Bruker, 2007), SAINT (Bruker, 2007), SIR2004 (Burla et al., 2005), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1O···O2i | 1.05 (3) | 1.62 (3) | 2.6628 (18) | 174 (3) |
Symmetry code: (i) −x+1, −y, −z+1. |
Acknowledgements
SX and HS are grateful to the departmental fund and the Grant-in-aid for Faculty Research from Indiana University Kokomo, as well as a Senior Research Grant from Indiana Academy of Science.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The title carboxylic acid was prepared to study the interaction of the two enantiomers in the solid state. We have previously reported the structure of its precursor, which is achiral and forms hydrogen-bonded dimers (Xie et al., 2007b). The chirality of the title compound is generated by the presence of the double bond in the cyclohexene ring (Xie et al., 2004). The resultant racemate is made up of carboxylic acid RS dimers (Xie et al., 2002, 2007a, 2008). The structure and atom numbering are shown in Fig. 1, which illustrates the half-chair conformation of the cyclohexene ring. The torsion angles involving atoms C4, C5, C6, C1, and C2 are all near 180°, as are those involving atoms C13, C2, C3, C4, and C15. The carboxyl group is almost perpendicular to the cyclohexene ring with an angle of 86.5° between the O1—C14—O2 plane and the C1—C6 ring. The double bond between C5—C6 is not fully conjugated with the aromatic ring as shown by the C1—C6—C5 plane to benzene ring angle of 42.4°. Unlike other previously reported para substituted analogs, the molecule also has a chiral axis due to the meta methyl substituent on the aromatic ring.
Fig. 2 shows the hydrogen bonding scheme. Atom O1 acts as a donor in an intermolecular hydrogen bond to atom O2, producing an R22(8) ring (Bernstein et al., 1995), thus creating a hydrogen-bonded dimer. There is no evidence to suggest that weak directional interactions interconnect the dimers. Hydrogen bond geometry is given in Table 1.