metal-organic compounds
catena-Poly[[[aquacadmium(II)]bis(μ-4-hydroxypyridine-2,6-dicarboxylato)[aquacadmium(II)]di-μ-aqua] tetrahydrate]
aFaculty of Chemistry, Tarbiat Moallem University, Tehran, Iran, bFaculty of Chemistry, Islamic Azad University, North Tehran Branch, Tehran, Iran, and cFaculty of Chemistry, Iran University of Science and Technology, Tehran, Iran
*Correspondence e-mail: haghabozorg@yahoo.com
The title polymeric compound, {[Cd2(C7H3NO5)2(H2O)4]·4H2O}n or {[Cd2(hypydc)2(H2O)4]·4H2O}n (where hypydcH2 is 4-hydroxypyridine-2,6-dicarboxylic acid), was synthesized by the reaction of cadmium(II) nitrate hexahydrate with 4-hydroxypyridine-2,6-dicarboxylic acid and propane-1,3-diamine, in a 1:2:2 molar ratio in aqueous solution. The compound is a seven-coordinate binuclear polymeric complex with distorted pentagonal bipyramidal geometry around CdII [Cd—O = 2.247 (4)–2.474 (3) Å]. In the binuclear monomeric units, the central atoms join together by O atoms of two bridging tridentate (hypydc)2− ligands, and the polymer propagates via two bridging water molecules that link each CdII centre of one monomer to the adjacent neighbour. Propane-1,3-diamine (pn) does not appear in the product but plays a role as a base. Intermolecular O—H⋯O and C—H⋯O hydrogen bonds, and π–π stacking interactions, with distances of 3.725 (3) and 3.766 (3) Å, connect the various components.
Related literature
For a review of proton-transfer compounds, see: Aghabozorg, Manteghi & Sheshmani (2008). For related compounds, see: Aghabozorg et al. (2007); Aghabozorg, Motyeian et al. (2008); Aghabozorg, Roshan et al. (2008); Fu et al. (2004); Odoko et al. (2002); Ranjbar et al. (2002); Wu et al. (2007). For the isostructural Mn compound, see: Ghosh et al. (2005).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2007); cell SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536808030869/om2258sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536808030869/om2258Isup2.hkl
A solution of Cd(NO3)2.6H2O (172 mg, 0.5 mmol) in water (10 ml) was added to an aqueous solution of propane-1,3-diamine(74 mg, 1 mmol) and 4-hydroxypyridine-2,6-dicarboxylic acid (167 mg, 1 mmol) in water (10 ml) in a 1:2:2 molar ratio and heated for two hours. Colourless crystals of the title compound were obtained after allowing the mixture to stand for four months at room temperature.
The H atoms of the OH-groups and the water molecules were located in the difference Fourier map and all O—H distancies were normalized at 0.85 Å. The H(O) atoms were refined in rigid model with fixed thermal (Uiso(H) = 1.2Ueq(O)) parameters. The H(C) atoms were placed in calculated positions with r(C—H) = 0.95 Å and refined in riding model with fixed thermal parameters (Uiso(H) = 1.2Ueq(C)). The Ueq(O or C) are the equivalent thermal parameters of the oxygen and carbon atoms, respectively, to which corresponding H atoms are bonded.
There is a high positive residual density of 1.03 e Å-3 near the Cd2 center (0.77 Å) due to considerable absorption effects which could not be completely corrected.
Data collection: APEX2 (Bruker, 2007); cell
SAINT (Bruker, 2007); data reduction: SAINT (Bruker, 2007); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. The molecular structure of the title compound as a fragment of the polymeric chain. Displacement ellipsoids are drawn at 50% probability level. Symmetry codes to generate atoms with labels: A: -x + 1,-y + 1,-z + 1; B: -x + 1, -y, -z + 1. | |
Fig. 2. Coordination polyhedron of the title compound [i: (1 - x, 1 - y, 1 - z) and ii: (1 - x, -y, 1 - z)] | |
Fig. 3. π–π Stacking interactions of Cg1–Cg2 (Cg1: N1/C1–C5; Cg2: N2/C8–C12) and Cg2–Cg2 of the title compound. The average distances between the planes are 3.725 (3) Å (x, 1 + y, z) and 3.766 (3) Å (1 - x, -y, -z), respectively. | |
Fig. 4. The crystal packing of the title compound along a crystal axis. Hydrogen bonds are shown as dashed lines. | |
Fig. 5. A perspective view of the water cluster arranged in the structure. |
[Cd2(C7H3NO5)2(H2O)4]·4H2O | Z = 2 |
Mr = 731.14 | F(000) = 720 |
Triclinic, P1 | Dx = 2.223 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 9.4499 (6) Å | Cell parameters from 1712 reflections |
b = 10.8633 (7) Å | θ = 2.3–26.6° |
c = 11.2086 (9) Å | µ = 2.04 mm−1 |
α = 87.910 (3)° | T = 100 K |
β = 74.239 (2)° | Prism, colourless |
γ = 80.478 (2)° | 0.15 × 0.12 × 0.08 mm |
V = 1092.08 (13) Å3 |
Bruker SMART APEXII diffractometer | 6313 independent reflections |
Radiation source: fine-focus sealed tube | 4460 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.060 |
ϕ and ω scans | θmax = 30.1°, θmin = 1.9° |
Absorption correction: multi-scan (SADABS; Bruker, 2001) | h = −13→13 |
Tmin = 0.749, Tmax = 0.854 | k = −15→15 |
14393 measured reflections | l = −15→15 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.052 | Hydrogen site location: mixed |
wR(F2) = 0.091 | H-atom parameters constrained |
S = 1.00 | w = 1/[σ2(Fo2) + (0.020P)2 + 3.P] where P = (Fo2 + 2Fc2)/3 |
6313 reflections | (Δ/σ)max < 0.001 |
265 parameters | Δρmax = 1.03 e Å−3 |
0 restraints | Δρmin = −1.01 e Å−3 |
[Cd2(C7H3NO5)2(H2O)4]·4H2O | γ = 80.478 (2)° |
Mr = 731.14 | V = 1092.08 (13) Å3 |
Triclinic, P1 | Z = 2 |
a = 9.4499 (6) Å | Mo Kα radiation |
b = 10.8633 (7) Å | µ = 2.04 mm−1 |
c = 11.2086 (9) Å | T = 100 K |
α = 87.910 (3)° | 0.15 × 0.12 × 0.08 mm |
β = 74.239 (2)° |
Bruker SMART APEXII diffractometer | 6313 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2001) | 4460 reflections with I > 2σ(I) |
Tmin = 0.749, Tmax = 0.854 | Rint = 0.060 |
14393 measured reflections |
R[F2 > 2σ(F2)] = 0.052 | 0 restraints |
wR(F2) = 0.091 | H-atom parameters constrained |
S = 1.00 | Δρmax = 1.03 e Å−3 |
6313 reflections | Δρmin = −1.01 e Å−3 |
265 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cd1 | 0.52233 (4) | 0.41267 (3) | 0.34288 (3) | 0.01222 (9) | |
Cd2 | 0.64542 (4) | 0.07117 (3) | 0.36831 (3) | 0.01104 (9) | |
O1 | 0.7671 (4) | 0.7051 (4) | 0.4236 (3) | 0.0213 (9) | |
O2 | 0.6031 (4) | 0.5739 (3) | 0.4480 (3) | 0.0148 (8) | |
O3 | 0.9775 (4) | 0.7024 (3) | −0.0481 (3) | 0.0161 (8) | |
H3O | 0.9961 | 0.7687 | −0.0219 | 0.019* | |
O4 | 0.6494 (4) | 0.3865 (3) | −0.0651 (3) | 0.0176 (8) | |
O5 | 0.5617 (4) | 0.3419 (3) | 0.1337 (3) | 0.0168 (8) | |
O6 | 0.3269 (5) | 0.5374 (4) | 0.2974 (4) | 0.0362 (12) | |
H6A | 0.3554 | 0.5447 | 0.2191 | 0.043* | |
H6B | 0.2343 | 0.5340 | 0.3225 | 0.043* | |
O7 | 0.4213 (4) | 0.2185 (3) | 0.3620 (3) | 0.0125 (7) | |
H7A | 0.3838 | 0.2156 | 0.3015 | 0.015* | |
H7B | 0.3509 | 0.2240 | 0.4284 | 0.015* | |
O8 | 0.6944 (4) | 0.2700 (3) | 0.4137 (3) | 0.0131 (7) | |
H8A | 0.6943 | 0.2618 | 0.4894 | 0.016* | |
H8B | 0.7838 | 0.2795 | 0.3789 | 0.016* | |
O9 | 0.8938 (4) | 0.1332 (3) | −0.0142 (3) | 0.0154 (7) | |
O10 | 0.8252 (4) | 0.1290 (4) | 0.1920 (3) | 0.0189 (8) | |
O11 | 0.6211 (4) | −0.1986 (3) | −0.1198 (3) | 0.0154 (8) | |
H11O | 0.5712 | −0.2583 | −0.1067 | 0.018* | |
O12 | 0.3580 (4) | −0.2089 (3) | 0.3456 (3) | 0.0146 (7) | |
O13 | 0.4717 (4) | −0.0785 (3) | 0.4216 (3) | 0.0141 (7) | |
O14 | 0.8487 (4) | −0.0278 (4) | 0.4192 (4) | 0.0261 (9) | |
H14A | 0.9137 | −0.0794 | 0.3697 | 0.031* | |
H14B | 0.8540 | −0.0580 | 0.4892 | 0.031* | |
N1 | 0.6853 (5) | 0.5189 (4) | 0.2066 (4) | 0.0119 (4) | |
N2 | 0.6319 (4) | −0.0249 (4) | 0.1969 (4) | 0.0104 (4) | |
C1 | 0.7505 (5) | 0.6044 (5) | 0.2457 (4) | 0.0119 (4) | |
C2 | 0.8515 (5) | 0.6687 (4) | 0.1641 (4) | 0.0119 (4) | |
H2A | 0.8979 | 0.7272 | 0.1945 | 0.014* | |
C3 | 0.8838 (5) | 0.6462 (5) | 0.0370 (4) | 0.0119 (4) | |
C4 | 0.8116 (5) | 0.5594 (4) | −0.0030 (4) | 0.0119 (4) | |
H4A | 0.8286 | 0.5436 | −0.0890 | 0.014* | |
C5 | 0.7155 (5) | 0.4969 (4) | 0.0840 (4) | 0.0119 (4) | |
C6 | 0.7047 (6) | 0.6299 (5) | 0.3840 (5) | 0.0149 (10) | |
C7 | 0.6364 (5) | 0.4018 (5) | 0.0464 (4) | 0.0107 (9) | |
C8 | 0.7203 (5) | −0.0014 (4) | 0.0849 (4) | 0.0104 (4) | |
C9 | 0.7187 (5) | −0.0582 (4) | −0.0220 (4) | 0.0104 (4) | |
H9A | 0.7824 | −0.0395 | −0.0996 | 0.012* | |
C10 | 0.6223 (5) | −0.1432 (4) | −0.0149 (4) | 0.0104 (4) | |
C11 | 0.5281 (5) | −0.1673 (4) | 0.1005 (4) | 0.0104 (4) | |
H11A | 0.4595 | −0.2238 | 0.1076 | 0.012* | |
C12 | 0.5376 (5) | −0.1068 (4) | 0.2040 (4) | 0.0104 (4) | |
C13 | 0.8203 (6) | 0.0931 (5) | 0.0898 (5) | 0.0121 (10) | |
C14 | 0.4476 (6) | −0.1331 (5) | 0.3343 (4) | 0.0113 (10) | |
O15 | 0.9715 (4) | 0.3122 (4) | 0.3047 (3) | 0.0203 (8) | |
H15A | 0.9866 | 0.3760 | 0.3381 | 0.024* | |
H15B | 0.9582 | 0.3302 | 0.2337 | 0.024* | |
O16 | 0.1500 (5) | 0.0936 (4) | 0.3498 (4) | 0.0355 (11) | |
H16A | 0.0945 | 0.0451 | 0.3354 | 0.043* | |
H16B | 0.1150 | 0.1647 | 0.3267 | 0.043* | |
O17 | 0.0340 (6) | 0.5346 (5) | 0.3824 (6) | 0.0617 (17) | |
H17A | −0.0011 | 0.5732 | 0.3266 | 0.074* | |
H17B | 0.0098 | 0.5884 | 0.4407 | 0.074* | |
O18 | 0.1026 (5) | 0.8506 (6) | 0.2576 (4) | 0.0601 (18) | |
H18A | 0.1070 | 0.8458 | 0.1811 | 0.072* | |
H18B | 0.1561 | 0.7904 | 0.2832 | 0.072* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cd1 | 0.0173 (2) | 0.0132 (2) | 0.00806 (18) | −0.00777 (16) | −0.00365 (15) | 0.00109 (14) |
Cd2 | 0.01285 (19) | 0.01276 (19) | 0.00844 (18) | −0.00532 (15) | −0.00244 (15) | −0.00044 (14) |
O1 | 0.031 (2) | 0.028 (2) | 0.0082 (17) | −0.0200 (18) | −0.0008 (16) | −0.0055 (15) |
O2 | 0.0185 (19) | 0.0151 (19) | 0.0115 (18) | −0.0074 (15) | −0.0024 (15) | −0.0002 (14) |
O3 | 0.0175 (19) | 0.0163 (19) | 0.0130 (18) | −0.0089 (15) | 0.0024 (15) | −0.0004 (14) |
O4 | 0.027 (2) | 0.019 (2) | 0.0095 (17) | −0.0118 (16) | −0.0043 (15) | 0.0014 (14) |
O5 | 0.026 (2) | 0.0194 (19) | 0.0077 (17) | −0.0168 (16) | −0.0011 (15) | 0.0009 (14) |
O6 | 0.025 (2) | 0.063 (3) | 0.013 (2) | 0.016 (2) | −0.0060 (18) | −0.002 (2) |
O7 | 0.0106 (17) | 0.0196 (19) | 0.0072 (16) | −0.0046 (14) | −0.0003 (13) | −0.0022 (13) |
O8 | 0.0149 (18) | 0.0188 (19) | 0.0068 (16) | −0.0053 (14) | −0.0036 (14) | 0.0015 (13) |
O9 | 0.0179 (19) | 0.0188 (19) | 0.0115 (17) | −0.0097 (15) | −0.0034 (14) | 0.0001 (14) |
O10 | 0.025 (2) | 0.025 (2) | 0.0087 (17) | −0.0142 (17) | −0.0024 (15) | −0.0027 (15) |
O11 | 0.022 (2) | 0.0192 (19) | 0.0074 (16) | −0.0142 (15) | −0.0021 (14) | −0.0031 (14) |
O12 | 0.022 (2) | 0.0134 (18) | 0.0091 (17) | −0.0050 (15) | −0.0028 (15) | −0.0040 (13) |
O13 | 0.0194 (19) | 0.0139 (18) | 0.0114 (17) | −0.0098 (15) | −0.0038 (15) | −0.0016 (14) |
O14 | 0.027 (2) | 0.032 (2) | 0.018 (2) | −0.0006 (19) | −0.0072 (18) | 0.0077 (17) |
N1 | 0.0120 (10) | 0.0121 (10) | 0.0104 (9) | −0.0027 (7) | −0.0003 (7) | −0.0008 (7) |
N2 | 0.0103 (9) | 0.0122 (10) | 0.0084 (9) | −0.0023 (7) | −0.0017 (7) | 0.0000 (7) |
C1 | 0.0120 (10) | 0.0121 (10) | 0.0104 (9) | −0.0027 (7) | −0.0003 (7) | −0.0008 (7) |
C2 | 0.0120 (10) | 0.0121 (10) | 0.0104 (9) | −0.0027 (7) | −0.0003 (7) | −0.0008 (7) |
C3 | 0.0120 (10) | 0.0121 (10) | 0.0104 (9) | −0.0027 (7) | −0.0003 (7) | −0.0008 (7) |
C4 | 0.0120 (10) | 0.0121 (10) | 0.0104 (9) | −0.0027 (7) | −0.0003 (7) | −0.0008 (7) |
C5 | 0.0120 (10) | 0.0121 (10) | 0.0104 (9) | −0.0027 (7) | −0.0003 (7) | −0.0008 (7) |
C6 | 0.016 (3) | 0.010 (2) | 0.017 (3) | −0.004 (2) | 0.000 (2) | −0.0035 (19) |
C7 | 0.007 (2) | 0.014 (2) | 0.010 (2) | −0.0031 (18) | 0.0009 (18) | −0.0028 (18) |
C8 | 0.0103 (9) | 0.0122 (10) | 0.0084 (9) | −0.0023 (7) | −0.0017 (7) | 0.0000 (7) |
C9 | 0.0103 (9) | 0.0122 (10) | 0.0084 (9) | −0.0023 (7) | −0.0017 (7) | 0.0000 (7) |
C10 | 0.0103 (9) | 0.0122 (10) | 0.0084 (9) | −0.0023 (7) | −0.0017 (7) | 0.0000 (7) |
C11 | 0.0103 (9) | 0.0122 (10) | 0.0084 (9) | −0.0023 (7) | −0.0017 (7) | 0.0000 (7) |
C12 | 0.0103 (9) | 0.0122 (10) | 0.0084 (9) | −0.0023 (7) | −0.0017 (7) | 0.0000 (7) |
C13 | 0.013 (2) | 0.013 (2) | 0.014 (2) | −0.0096 (19) | −0.0051 (19) | 0.0017 (18) |
C14 | 0.013 (2) | 0.011 (2) | 0.011 (2) | −0.0052 (19) | −0.0050 (19) | 0.0063 (18) |
O15 | 0.0175 (19) | 0.033 (2) | 0.0114 (18) | −0.0112 (17) | −0.0013 (15) | −0.0039 (16) |
O16 | 0.052 (3) | 0.037 (3) | 0.018 (2) | −0.012 (2) | −0.009 (2) | 0.0051 (19) |
O17 | 0.036 (3) | 0.055 (4) | 0.098 (5) | 0.003 (3) | −0.026 (3) | −0.040 (3) |
O18 | 0.031 (3) | 0.127 (5) | 0.012 (2) | 0.029 (3) | −0.011 (2) | −0.013 (3) |
Cd1—O6 | 2.267 (4) | O13—C14 | 1.252 (6) |
Cd1—N1 | 2.284 (4) | O13—Cd2ii | 2.312 (3) |
Cd1—O2i | 2.320 (3) | O14—H14A | 0.8500 |
Cd1—O8 | 2.335 (3) | O14—H14B | 0.8500 |
Cd1—O5 | 2.406 (3) | N1—C1 | 1.343 (6) |
Cd1—O7 | 2.435 (3) | N1—C5 | 1.347 (6) |
Cd1—O2 | 2.474 (3) | N2—C12 | 1.346 (6) |
Cd2—O14 | 2.244 (4) | N2—C8 | 1.347 (6) |
Cd2—N2 | 2.263 (4) | C1—C2 | 1.390 (7) |
Cd2—O13ii | 2.312 (3) | C1—C6 | 1.515 (7) |
Cd2—O10 | 2.372 (4) | C2—C3 | 1.395 (7) |
Cd2—O8 | 2.383 (3) | C2—H2A | 0.9500 |
Cd2—O13 | 2.445 (3) | C3—C4 | 1.402 (7) |
Cd2—O7 | 2.450 (3) | C4—C5 | 1.383 (7) |
O1—C6 | 1.241 (6) | C4—H4A | 0.9500 |
O2—C6 | 1.262 (6) | C5—C7 | 1.505 (7) |
O2—Cd1i | 2.320 (3) | C8—C9 | 1.373 (6) |
O3—C3 | 1.320 (5) | C8—C13 | 1.518 (6) |
O3—H3O | 0.8500 | C9—C10 | 1.387 (6) |
O4—C7 | 1.237 (6) | C9—H9A | 0.9500 |
O5—C7 | 1.269 (6) | C10—C11 | 1.400 (6) |
O6—H6A | 0.8500 | C11—C12 | 1.385 (6) |
O6—H6B | 0.8500 | C11—H11A | 0.9500 |
O7—H7A | 0.8501 | C12—C14 | 1.521 (7) |
O7—H7B | 0.8500 | O15—H15A | 0.8500 |
O8—H8A | 0.8500 | O15—H15B | 0.8500 |
O8—H8B | 0.8500 | O16—H16A | 0.8500 |
O9—C13 | 1.286 (6) | O16—H16B | 0.8500 |
O10—C13 | 1.238 (6) | O17—H17A | 0.8499 |
O11—C10 | 1.344 (5) | O17—H17B | 0.8501 |
O11—H11O | 0.8500 | O18—H18A | 0.8500 |
O12—C14 | 1.255 (6) | O18—H18B | 0.8500 |
O6—Cd1—N1 | 90.59 (16) | H8A—O8—H8B | 102.3 |
O6—Cd1—O2i | 90.18 (14) | C13—O10—Cd2 | 116.8 (3) |
N1—Cd1—O2i | 136.84 (13) | C10—O11—H11O | 113.0 |
O6—Cd1—O8 | 170.72 (15) | C14—O13—Cd2ii | 131.0 (3) |
N1—Cd1—O8 | 98.66 (13) | C14—O13—Cd2 | 117.7 (3) |
O2i—Cd1—O8 | 82.57 (12) | Cd2ii—O13—Cd2 | 110.75 (13) |
O6—Cd1—O5 | 81.50 (14) | Cd2—O14—H14A | 121.4 |
N1—Cd1—O5 | 69.20 (13) | Cd2—O14—H14B | 127.6 |
O2i—Cd1—O5 | 153.07 (12) | H14A—O14—H14B | 101.5 |
O8—Cd1—O5 | 102.43 (12) | C1—N1—C5 | 118.9 (4) |
O6—Cd1—O7 | 97.28 (15) | C1—N1—Cd1 | 121.5 (3) |
N1—Cd1—O7 | 141.26 (13) | C5—N1—Cd1 | 119.6 (3) |
O2i—Cd1—O7 | 81.24 (11) | C12—N2—C8 | 118.6 (4) |
O8—Cd1—O7 | 75.95 (12) | C12—N2—Cd2 | 121.3 (3) |
O5—Cd1—O7 | 74.55 (11) | C8—N2—Cd2 | 120.1 (3) |
O6—Cd1—O2 | 96.88 (15) | N1—C1—C2 | 122.2 (4) |
N1—Cd1—O2 | 67.99 (13) | N1—C1—C6 | 116.1 (4) |
O2i—Cd1—O2 | 69.08 (14) | C2—C1—C6 | 121.6 (4) |
O8—Cd1—O2 | 85.97 (12) | C1—C2—C3 | 119.2 (5) |
O5—Cd1—O2 | 137.14 (11) | C1—C2—H2A | 120.4 |
O7—Cd1—O2 | 147.01 (11) | C3—C2—H2A | 120.4 |
O14—Cd2—N2 | 107.13 (15) | O3—C3—C2 | 124.0 (4) |
O14—Cd2—O13ii | 86.47 (13) | O3—C3—C4 | 117.9 (4) |
N2—Cd2—O13ii | 137.82 (13) | C2—C3—C4 | 118.1 (4) |
O14—Cd2—O10 | 82.66 (14) | C5—C4—C3 | 119.3 (4) |
N2—Cd2—O10 | 70.05 (13) | C5—C4—H4A | 120.4 |
O13ii—Cd2—O10 | 152.13 (12) | C3—C4—H4A | 120.4 |
O14—Cd2—O8 | 91.90 (13) | N1—C5—C4 | 122.2 (5) |
N2—Cd2—O8 | 135.50 (13) | N1—C5—C7 | 116.2 (4) |
O13ii—Cd2—O8 | 81.67 (12) | C4—C5—C7 | 121.5 (4) |
O10—Cd2—O8 | 73.16 (12) | O1—C6—O2 | 126.1 (5) |
O14—Cd2—O13 | 103.58 (13) | O1—C6—C1 | 117.7 (4) |
N2—Cd2—O13 | 68.77 (13) | O2—C6—C1 | 116.2 (4) |
O13ii—Cd2—O13 | 69.25 (13) | O4—C7—O5 | 125.0 (5) |
O10—Cd2—O13 | 138.33 (12) | O4—C7—C5 | 118.8 (4) |
O8—Cd2—O13 | 145.76 (12) | O5—C7—C5 | 116.2 (4) |
O14—Cd2—O7 | 163.49 (13) | N2—C8—C9 | 122.7 (4) |
N2—Cd2—O7 | 89.32 (13) | N2—C8—C13 | 113.3 (4) |
O13ii—Cd2—O7 | 82.00 (12) | C9—C8—C13 | 124.1 (4) |
O10—Cd2—O7 | 102.26 (12) | C8—C9—C10 | 118.8 (4) |
O8—Cd2—O7 | 74.81 (11) | C8—C9—H9A | 120.6 |
O13—Cd2—O7 | 83.36 (12) | C10—C9—H9A | 120.6 |
C6—O2—Cd1i | 131.4 (3) | O11—C10—C9 | 118.6 (4) |
C6—O2—Cd1 | 117.6 (3) | O11—C10—C11 | 122.2 (4) |
Cd1i—O2—Cd1 | 110.92 (14) | C9—C10—C11 | 119.2 (4) |
C3—O3—H3O | 113.4 | C12—C11—C10 | 118.3 (4) |
C7—O5—Cd1 | 118.0 (3) | C12—C11—H11A | 120.9 |
Cd1—O6—H6A | 103.6 | C10—C11—H11A | 120.9 |
Cd1—O6—H6B | 129.8 | N2—C12—C11 | 122.3 (4) |
H6A—O6—H6B | 111.7 | N2—C12—C14 | 115.4 (4) |
Cd1—O7—Cd2 | 99.37 (12) | C11—C12—C14 | 122.2 (4) |
Cd1—O7—H7A | 106.8 | O10—C13—O9 | 123.6 (4) |
Cd2—O7—H7A | 119.4 | O10—C13—C8 | 119.1 (4) |
Cd1—O7—H7B | 107.0 | O9—C13—C8 | 117.3 (4) |
Cd2—O7—H7B | 115.1 | O13—C14—O12 | 125.6 (5) |
H7A—O7—H7B | 107.9 | O13—C14—C12 | 116.7 (4) |
Cd1—O8—Cd2 | 104.26 (13) | O12—C14—C12 | 117.6 (4) |
Cd1—O8—H8A | 124.0 | H15A—O15—H15B | 110.3 |
Cd2—O8—H8A | 101.5 | H16A—O16—H16B | 104.2 |
Cd1—O8—H8B | 112.2 | H17A—O17—H17B | 102.7 |
Cd2—O8—H8B | 112.2 | H18A—O18—H18B | 114.0 |
O6—Cd1—O2—C6 | −94.9 (4) | O13ii—Cd2—N2—C12 | −2.7 (5) |
N1—Cd1—O2—C6 | −7.1 (4) | O10—Cd2—N2—C12 | 176.7 (4) |
O2i—Cd1—O2—C6 | 177.6 (5) | O8—Cd2—N2—C12 | −147.3 (3) |
O8—Cd1—O2—C6 | 94.0 (4) | O13—Cd2—N2—C12 | 3.2 (3) |
O5—Cd1—O2—C6 | −10.0 (5) | O7—Cd2—N2—C12 | −79.9 (4) |
O7—Cd1—O2—C6 | 150.2 (3) | O14—Cd2—N2—C8 | −78.0 (4) |
O6—Cd1—O2—Cd1i | 87.55 (17) | O13ii—Cd2—N2—C8 | 177.9 (3) |
N1—Cd1—O2—Cd1i | 175.4 (2) | O10—Cd2—N2—C8 | −2.7 (3) |
O2i—Cd1—O2—Cd1i | 0.0 | O8—Cd2—N2—C8 | 33.3 (4) |
O8—Cd1—O2—Cd1i | −83.58 (15) | O13—Cd2—N2—C8 | −176.2 (4) |
O5—Cd1—O2—Cd1i | 172.46 (14) | O7—Cd2—N2—C8 | 100.6 (4) |
O7—Cd1—O2—Cd1i | −27.3 (3) | C5—N1—C1—C2 | −1.8 (7) |
O6—Cd1—O5—C7 | 86.1 (4) | Cd1—N1—C1—C2 | 179.1 (4) |
N1—Cd1—O5—C7 | −7.8 (3) | C5—N1—C1—C6 | 176.5 (4) |
O2i—Cd1—O5—C7 | 159.4 (3) | Cd1—N1—C1—C6 | −2.5 (6) |
O8—Cd1—O5—C7 | −102.5 (4) | N1—C1—C2—C3 | 1.6 (8) |
O7—Cd1—O5—C7 | −173.9 (4) | C6—C1—C2—C3 | −176.6 (5) |
O2—Cd1—O5—C7 | −4.9 (5) | C1—C2—C3—O3 | 179.8 (4) |
O6—Cd1—O7—Cd2 | 168.82 (13) | C1—C2—C3—C4 | 0.3 (7) |
N1—Cd1—O7—Cd2 | 68.7 (2) | O3—C3—C4—C5 | 178.5 (4) |
O2i—Cd1—O7—Cd2 | −102.13 (13) | C2—C3—C4—C5 | −1.9 (7) |
O8—Cd1—O7—Cd2 | −17.66 (11) | C1—N1—C5—C4 | 0.1 (7) |
O5—Cd1—O7—Cd2 | 89.76 (13) | Cd1—N1—C5—C4 | 179.2 (4) |
O2—Cd1—O7—Cd2 | −76.4 (2) | C1—N1—C5—C7 | −178.9 (4) |
O14—Cd2—O7—Cd1 | 54.7 (5) | Cd1—N1—C5—C7 | 0.2 (6) |
N2—Cd2—O7—Cd1 | −120.54 (14) | C3—C4—C5—N1 | 1.8 (8) |
O13ii—Cd2—O7—Cd1 | 100.87 (13) | C3—C4—C5—C7 | −179.3 (4) |
O10—Cd2—O7—Cd1 | −51.13 (13) | Cd1i—O2—C6—O1 | 3.4 (8) |
O8—Cd2—O7—Cd1 | 17.39 (11) | Cd1—O2—C6—O1 | −173.5 (4) |
O13—Cd2—O7—Cd1 | 170.76 (12) | Cd1i—O2—C6—C1 | −174.8 (3) |
N1—Cd1—O8—Cd2 | −122.31 (14) | Cd1—O2—C6—C1 | 8.2 (6) |
O2i—Cd1—O8—Cd2 | 101.29 (14) | N1—C1—C6—O1 | 177.4 (5) |
O5—Cd1—O8—Cd2 | −51.83 (14) | C2—C1—C6—O1 | −4.2 (8) |
O7—Cd1—O8—Cd2 | 18.52 (11) | N1—C1—C6—O2 | −4.2 (7) |
O2—Cd1—O8—Cd2 | 170.69 (14) | C2—C1—C6—O2 | 174.2 (5) |
O14—Cd2—O8—Cd1 | 171.44 (14) | Cd1—O5—C7—O4 | −170.3 (4) |
N2—Cd2—O8—Cd1 | 54.4 (2) | Cd1—O5—C7—C5 | 10.5 (6) |
O13ii—Cd2—O8—Cd1 | −102.41 (14) | N1—C5—C7—O4 | 173.4 (5) |
O10—Cd2—O8—Cd1 | 89.69 (15) | C4—C5—C7—O4 | −5.6 (7) |
O13—Cd2—O8—Cd1 | −70.8 (2) | N1—C5—C7—O5 | −7.4 (7) |
O7—Cd2—O8—Cd1 | −18.49 (11) | C4—C5—C7—O5 | 173.7 (5) |
O14—Cd2—O10—C13 | 118.3 (4) | C12—N2—C8—C9 | −0.4 (7) |
N2—Cd2—O10—C13 | 7.0 (4) | Cd2—N2—C8—C9 | 179.0 (4) |
O13ii—Cd2—O10—C13 | −173.8 (3) | C12—N2—C8—C13 | 179.6 (4) |
O8—Cd2—O10—C13 | −147.5 (4) | Cd2—N2—C8—C13 | −1.0 (5) |
O13—Cd2—O10—C13 | 16.1 (5) | N2—C8—C9—C10 | 0.0 (7) |
O7—Cd2—O10—C13 | −77.7 (4) | C13—C8—C9—C10 | 180.0 (4) |
O14—Cd2—O13—C14 | −107.3 (4) | C8—C9—C10—O11 | −180.0 (4) |
N2—Cd2—O13—C14 | −3.9 (4) | C8—C9—C10—C11 | 1.0 (7) |
O13ii—Cd2—O13—C14 | 171.9 (5) | O11—C10—C11—C12 | 179.5 (4) |
O10—Cd2—O13—C14 | −13.1 (5) | C9—C10—C11—C12 | −1.4 (7) |
O8—Cd2—O13—C14 | 138.2 (3) | C8—N2—C12—C11 | −0.1 (7) |
O7—Cd2—O13—C14 | 87.9 (4) | Cd2—N2—C12—C11 | −179.6 (4) |
O14—Cd2—O13—Cd2ii | 80.84 (17) | C8—N2—C12—C14 | 177.0 (4) |
N2—Cd2—O13—Cd2ii | −175.8 (2) | Cd2—N2—C12—C14 | −2.5 (6) |
O13ii—Cd2—O13—Cd2ii | 0.0 | C10—C11—C12—N2 | 1.0 (7) |
O10—Cd2—O13—Cd2ii | 175.07 (15) | C10—C11—C12—C14 | −175.9 (4) |
O8—Cd2—O13—Cd2ii | −33.7 (3) | Cd2—O10—C13—O9 | 168.5 (4) |
O7—Cd2—O13—Cd2ii | −83.93 (15) | Cd2—O10—C13—C8 | −10.2 (6) |
O6—Cd1—N1—C1 | 101.9 (4) | N2—C8—C13—O10 | 7.7 (7) |
O2i—Cd1—N1—C1 | 11.0 (5) | C9—C8—C13—O10 | −172.3 (5) |
O8—Cd1—N1—C1 | −77.4 (4) | N2—C8—C13—O9 | −171.1 (4) |
O5—Cd1—N1—C1 | −177.5 (4) | C9—C8—C13—O9 | 8.9 (7) |
O7—Cd1—N1—C1 | −155.7 (3) | Cd2ii—O13—C14—O12 | −7.4 (8) |
O2—Cd1—N1—C1 | 4.7 (4) | Cd2—O13—C14—O12 | −177.3 (4) |
O6—Cd1—N1—C5 | −77.2 (4) | Cd2ii—O13—C14—C12 | 174.0 (3) |
O2i—Cd1—N1—C5 | −168.1 (3) | Cd2—O13—C14—C12 | 4.1 (6) |
O8—Cd1—N1—C5 | 103.6 (4) | N2—C12—C14—O13 | −1.3 (7) |
O5—Cd1—N1—C5 | 3.5 (3) | C11—C12—C14—O13 | 175.8 (5) |
O7—Cd1—N1—C5 | 25.2 (5) | N2—C12—C14—O12 | 180.0 (4) |
O2—Cd1—N1—C5 | −174.4 (4) | C11—C12—C14—O12 | −2.9 (7) |
O14—Cd2—N2—C12 | 101.5 (4) |
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) −x+1, −y, −z+1. |
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H3O···O9iii | 0.85 | 1.74 | 2.536 (5) | 156 |
O6—H6A···O4iv | 0.85 | 1.87 | 2.665 (5) | 156 |
O6—H6B···O17 | 0.85 | 1.83 | 2.677 (8) | 177 |
O7—H7A···O11v | 0.85 | 2.07 | 2.871 (5) | 158 |
O7—H7B···O1i | 0.85 | 1.84 | 2.639 (5) | 156 |
O8—H8A···O12ii | 0.85 | 1.88 | 2.687 (5) | 159 |
O8—H8B···O15 | 0.85 | 1.83 | 2.679 (5) | 176 |
O11—H11O···O5v | 0.85 | 1.76 | 2.547 (5) | 153 |
O14—H14A···O18vi | 0.85 | 1.94 | 2.747 (7) | 159 |
O14—H14B···O16ii | 0.85 | 1.82 | 2.663 (6) | 169 |
O15—H15A···O17vii | 0.85 | 1.96 | 2.802 (7) | 169 |
O15—H15B···O3iii | 0.85 | 2.03 | 2.790 (5) | 149 |
O16—H16A···O18viii | 0.85 | 2.30 | 3.013 (6) | 142 |
O16—H16A···O14ix | 0.85 | 2.51 | 3.228 (6) | 143 |
O16—H16B···O15ix | 0.85 | 1.97 | 2.791 (6) | 161 |
O18—H18A···O9iv | 0.85 | 1.88 | 2.719 (5) | 170 |
O18—H18B···O12x | 0.85 | 2.20 | 2.819 (6) | 129 |
C11—H11A···O4v | 0.95 | 2.31 | 3.224 (6) | 161 |
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) −x+1, −y, −z+1; (iii) −x+2, −y+1, −z; (iv) −x+1, −y+1, −z; (v) −x+1, −y, −z; (vi) x+1, y−1, z; (vii) x+1, y, z; (viii) x, y−1, z; (ix) x−1, y, z; (x) x, y+1, z. |
Experimental details
Crystal data | |
Chemical formula | [Cd2(C7H3NO5)2(H2O)4]·4H2O |
Mr | 731.14 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 100 |
a, b, c (Å) | 9.4499 (6), 10.8633 (7), 11.2086 (9) |
α, β, γ (°) | 87.910 (3), 74.239 (2), 80.478 (2) |
V (Å3) | 1092.08 (13) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 2.04 |
Crystal size (mm) | 0.15 × 0.12 × 0.08 |
Data collection | |
Diffractometer | Bruker SMART APEXII diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2001) |
Tmin, Tmax | 0.749, 0.854 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 14393, 6313, 4460 |
Rint | 0.060 |
(sin θ/λ)max (Å−1) | 0.705 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.052, 0.091, 1.00 |
No. of reflections | 6313 |
No. of parameters | 265 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 1.03, −1.01 |
Computer programs: APEX2 (Bruker, 2007), SAINT (Bruker, 2007), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H3O···O9i | 0.850 | 1.735 | 2.536 (5) | 156 |
O6—H6A···O4ii | 0.850 | 1.865 | 2.665 (5) | 156 |
O6—H6B···O17 | 0.850 | 1.828 | 2.677 (8) | 177 |
O7—H7A···O11iii | 0.850 | 2.065 | 2.871 (5) | 158 |
O7—H7B···O1iv | 0.850 | 1.841 | 2.639 (5) | 156 |
O8—H8A···O12v | 0.850 | 1.875 | 2.687 (5) | 159 |
O8—H8B···O15 | 0.850 | 1.830 | 2.679 (5) | 176 |
O11—H11O···O5iii | 0.850 | 1.760 | 2.547 (5) | 153 |
O14—H14A···O18vi | 0.850 | 1.935 | 2.747 (7) | 159 |
O14—H14B···O16v | 0.850 | 1.823 | 2.663 (6) | 169 |
O15—H15A···O17vii | 0.850 | 1.963 | 2.802 (7) | 169 |
O15—H15B···O3i | 0.850 | 2.029 | 2.790 (5) | 149 |
O16—H16A···O18viii | 0.850 | 2.297 | 3.013 (6) | 142 |
O16—H16A···O14ix | 0.850 | 2.505 | 3.228 (6) | 143 |
O16—H16B···O15ix | 0.850 | 1.974 | 2.791 (6) | 161 |
O18—H18A···O9ii | 0.850 | 1.879 | 2.719 (5) | 170 |
O18—H18B···O12x | 0.850 | 2.204 | 2.819 (6) | 129 |
C11—H11A···O4iii | 0.950 | 2.310 | 3.224 (6) | 161 |
Symmetry codes: (i) −x+2, −y+1, −z; (ii) −x+1, −y+1, −z; (iii) −x+1, −y, −z; (iv) −x+1, −y+1, −z+1; (v) −x+1, −y, −z+1; (vi) x+1, y−1, z; (vii) x+1, y, z; (viii) x, y−1, z; (ix) x−1, y, z; (x) x, y+1, z. |
Compound | Coordination No. | Cd—O bond length (Å) | Cd—N bond length (Å) | |
(enH2)2[Cd(pydc)3].6H2O, 1 (Fu et al., 2004) | 9 | 2.522, 2.541, 2.567 | 2.397, 2.419 | |
[Cd2(pydc)2(H2O)6].2pydcH2, 2 (Odoko et al., 2002) | 7 | 2.376, 2.396 | 2.478, 2.315 | |
[Cd2(pydc)2(CH3OH)2(H2O)]n, 3 (Wu et al., 2007) | 7 | 2.326, 2.331, 2.376, 2.464 | 2.319 | |
Cd(pydc)(H2O)3]2.2H2pydc, 4 (Ranjbar et al., 2002) | 7 | 2.367, 2.390, 2.453 | 2.321 | |
[Cd(py-2,3-dc)(H2O)3]n, 5 (Aghabozorg, Motyeian et al., 2008) | 6 | 2.259, 2.279 | 2.302 |
Cd—O bonds of coordinated water molecules are not considered. |
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
We have reported a number of cases in which a proton is transferred from a carboxylic acid to an amine to form some novel organic compounds. This work was recently reviewed (Aghabozorg, Manteghi & Sheshmani, 2008). With the use of these organic proton transfer compounds as starting materials, several metal organic compounds were prepared. Recently, we have combined the acid, amine and metallic salt in a one-pot reaction, including the title compound in this article, [Cd2(hypydc)2(H2O)4]}n.4nH2O (where hypydcH2 is 4-hydroxypyridine-2,6-dicarboxylic acid). A search of the literature shows that there are similar compounds to the title compound using pydc (pydcH2 = pyridine-2,6-dicarboxylic acid) as ligand to CdII such as (enH2)2[Cd(pydc)3].6H2O, 1 (Fu et al., 2004), or [Cd2(pydc)2(H2O)6].2pydcH2, 2(Odoko et al., 2002), [Cd2(pydc)2(CH3OH)2(H2O)]n, 3 (Wu et al., 2007), [Cd(pydc)(H2O)3]2.2H2pydc, 4 (Ranjbar et al., 2002), [Cd(py-2,3-dc)(H2O)3]n, 5, py-2,3-dc is pyridine-2,3-dicarboxylate, (Aghabozorg, Motyeian et al., 2008) or hypydc as ligand to different metals such as (pydaH)[Cr(hypydc)2].2H2O (Aghabozorg, Roshan, et al., 2008), [Ni(hypydc)(H2O)3].1.5H2O (Aghabozorg, Ghadermazi, et al., 2007).
The molecular structure, coordination polyhedra, π–π stacking, packing diagram and water cluster of the title compound are shown in Figs. 1–5. The extensive hydrogen bonding geometry is given in Table 1. Each of the two CdII atoms in the asymmetric unit is seven-coordinate. The coordination environment is distorted pentagonal bipyramidal, with two O and one N atoms of the (hypydc)2- group as well as one O atom of an inversion-related (hypydc)2- group and a bridging water O atom forming the pentagonal plane. The other bridging water O and one terminal O atom of a coordinated water form the apical groups (Figs. 1 and 2). The sums of the bond angles in the pentagonal plane around Cd1 and Cd2 are 362.05° and 362.89°, respectively. As shown in Fig. 1, the Cd1 and Cd2 atoms join together by O atoms of two bridging water molecules (O7 and O8), and the O atoms of tridentate (hypydc)2- ligands (O2 and O13) bridge Cd1 to Cd1A and Cd2 to Cd2B to make a polymeric feature. The compound is isostructural to {[Mn2(hypydc)2(H2O)4]}n.4nH2O which has been described as propagating in a one-dimensional staircase model (Ghosh et al., 2005).
Compared with the similar structures mentioned above and listed in Table 2, with various coordination numbers of six, seven and nine, the Cd—O distances of the title compound (average 2.388 Å) lie in the same range as compounds 2, 3, and 4 and far from compounds 1 and 5. However, the Cd—N distances (average 2.273 Å) are obviously shorter than all five compounds. Moreover, in the polymeric compound 3, the binuclear units are connected via carboxylate O atoms to build a one-dimensional polymeric chain, and in 5, the chain propagates via linking two oxygen atoms of (py-2,3-dc)2- to cadmium centers, while in the title compound, the bridging water molecules cause propagation of the binuclear unit.
An outstanding feature of the title compound is the presence of π–π stacking interactions between aromatic rings, Cg1–Cg2 (Cg1: N1/C1–C5; Cg2: N2/C8–C12) with distances of 3.725 (3) Å (x, 1 + y, z) and Cg2–Cg2 with distances of 3.767 (3) Å (1 - x, -y, -z), as shown in Fig. 3. Intermolecular O—H···O and C—H···O hydrogen bonds with D···A ranging from 2.534 (5) Å to 3.225 (6) Å (Table 1), ion pairing and π–π stacking interactions are observed. The arrangement of water molecules in the structure consists of an R6 motif coupled to a branched C10 motif as shown in Fig. 5.