organic compounds
Tectorigenin monohydrate: an isoflavone from Belamcanda chinensis
aSchool of Food Science, Henan Institute of Science and Technology, Xinxiang 453003, People's Republic of China, bCollege of Grain and Food, Henan University of Technology, Zhengzhou 450052, People's Republic of China, and cJilin Key Laboratory for Biotechnology of Agricultural Products Processing, Changchun University, Changchun 130022, People's Republic of China
*Correspondence e-mail: benguoliu2008@yahoo.com.cn
The title compound [systematic name: 5,7-dihydroxy-3-(4-hydroxyphenyl)-6-methoxy-4H-chromen-4-one monohydrate], C16H12O6·H2O, is isolated from Belamcanda chinensis and is said to have antimicrobiotic and anti-inflammatory effects. The chromen-4-one system and the benzene ring are inclined at a dihedral angle of 36.79 (6)°. Molecules are linked by inter- and intramolecular O—H⋯O hydrogen bonds.
Related literature
For general background, see: Oh et al. (2001). For a related structure, see: Gao et al. (2008).
Experimental
Crystal data
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Refinement
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Data collection: CrystalClear (Rigaku/MSC, 2005); cell CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536808030833/bt2795sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536808030833/bt2795Isup2.hkl
H atoms bonded to C were positioned geometrically (C—H=0.95–0.98 Å), and refined as riding with Uiso(H)=1.2Ueq(C) or 1.5eq(Cmethyl). The coordinates of the H atoms bonded to O were refined with Uiso(H)=1.5Ueq(O).
Data collection: CrystalClear (Rigaku/MSC, 2005); cell
CrystalClear (Rigaku/MSC, 2005); data reduction: CrystalClear (Rigaku/MSC, 2005); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. A view of the title compound. Displacement ellopsoids are drawn at the 30% probability level and H atoms are shown as small spheres of arbitrary radii. |
C16H12O6·H2O | F(000) = 664 |
Mr = 318.27 | Dx = 1.571 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 2562 reflections |
a = 12.971 (3) Å | θ = 1.6–27.1° |
b = 14.652 (3) Å | µ = 0.13 mm−1 |
c = 7.2930 (15) Å | T = 113 K |
β = 103.81 (3)° | Block, colorless |
V = 1346.0 (5) Å3 | 0.14 × 0.04 × 0.02 mm |
Z = 4 |
Rigaku Saturn CCD area-detector diffractometer | 2967 independent reflections |
Radiation source: rotating anode | 2069 reflections with I > 2σ(I) |
Confocal monochromator | Rint = 0.085 |
Detector resolution: 7.31 pixels mm-1 | θmax = 27.1°, θmin = 1.6° |
ω and ϕ scans | h = −16→16 |
Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2005) | k = −15→18 |
Tmin = 0.973, Tmax = 0.998 | l = −9→7 |
9180 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.045 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.117 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.00 | w = 1/[σ2(Fo2) + (0.0629P)2] where P = (Fo2 + 2Fc2)/3 |
2967 reflections | (Δ/σ)max = 0.001 |
224 parameters | Δρmax = 0.33 e Å−3 |
0 restraints | Δρmin = −0.27 e Å−3 |
C16H12O6·H2O | V = 1346.0 (5) Å3 |
Mr = 318.27 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 12.971 (3) Å | µ = 0.13 mm−1 |
b = 14.652 (3) Å | T = 113 K |
c = 7.2930 (15) Å | 0.14 × 0.04 × 0.02 mm |
β = 103.81 (3)° |
Rigaku Saturn CCD area-detector diffractometer | 2967 independent reflections |
Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2005) | 2069 reflections with I > 2σ(I) |
Tmin = 0.973, Tmax = 0.998 | Rint = 0.085 |
9180 measured reflections |
R[F2 > 2σ(F2)] = 0.045 | 0 restraints |
wR(F2) = 0.117 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.00 | Δρmax = 0.33 e Å−3 |
2967 reflections | Δρmin = −0.27 e Å−3 |
224 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.15492 (10) | 0.72865 (7) | −0.00354 (17) | 0.0204 (3) | |
H1 | 0.1297 (17) | 0.6740 (14) | −0.033 (3) | 0.031* | |
O2 | 0.26095 (9) | 0.56579 (7) | 0.09198 (16) | 0.0191 (3) | |
O3 | 0.45733 (10) | 0.56828 (7) | 0.34259 (17) | 0.0193 (3) | |
H3 | 0.5174 (18) | 0.5889 (13) | 0.420 (3) | 0.029* | |
O4 | 0.45077 (9) | 0.89559 (7) | 0.32487 (17) | 0.0173 (3) | |
O5 | 0.61065 (9) | 0.66388 (7) | 0.53713 (16) | 0.0188 (3) | |
O6 | 1.02531 (10) | 0.87836 (8) | 0.95714 (18) | 0.0221 (3) | |
H6 | 1.0680 (18) | 0.8325 (15) | 0.952 (3) | 0.033* | |
C1 | 0.25505 (13) | 0.72879 (10) | 0.1088 (2) | 0.0159 (4) | |
C2 | 0.30232 (13) | 0.81198 (9) | 0.1645 (2) | 0.0161 (4) | |
H2 | 0.2660 | 0.8676 | 0.1254 | 0.019* | |
C3 | 0.40402 (13) | 0.81206 (9) | 0.2788 (2) | 0.0142 (4) | |
C4 | 0.55224 (13) | 0.89830 (10) | 0.4301 (2) | 0.0157 (4) | |
H4 | 0.5850 | 0.9566 | 0.4520 | 0.019* | |
C5 | 0.61050 (13) | 0.82575 (10) | 0.5063 (2) | 0.0141 (4) | |
C6 | 0.56447 (13) | 0.73485 (10) | 0.4688 (2) | 0.0142 (4) | |
C7 | 0.45876 (13) | 0.73227 (10) | 0.3443 (2) | 0.0141 (4) | |
C8 | 0.40834 (13) | 0.64784 (9) | 0.2855 (2) | 0.0148 (4) | |
C9 | 0.30772 (14) | 0.64647 (9) | 0.1659 (2) | 0.0155 (4) | |
C10 | 0.22428 (15) | 0.50987 (11) | 0.2257 (3) | 0.0243 (5) | |
H10A | 0.1689 | 0.5425 | 0.2702 | 0.036* | |
H10B | 0.2838 | 0.4963 | 0.3332 | 0.036* | |
H10C | 0.1952 | 0.4527 | 0.1648 | 0.036* | |
C11 | 0.71993 (13) | 0.83905 (9) | 0.6228 (2) | 0.0153 (4) | |
C12 | 0.74392 (14) | 0.91262 (9) | 0.7482 (2) | 0.0157 (4) | |
H12 | 0.6895 | 0.9541 | 0.7595 | 0.019* | |
C13 | 0.84645 (14) | 0.92549 (9) | 0.8561 (2) | 0.0172 (4) | |
H13 | 0.8622 | 0.9759 | 0.9401 | 0.021* | |
C14 | 0.92533 (13) | 0.86514 (10) | 0.8412 (2) | 0.0165 (4) | |
C15 | 0.90422 (14) | 0.79282 (10) | 0.7145 (2) | 0.0197 (4) | |
H15 | 0.9594 | 0.7526 | 0.7010 | 0.024* | |
C16 | 0.80091 (14) | 0.78018 (10) | 0.6076 (2) | 0.0185 (4) | |
H16 | 0.7857 | 0.7302 | 0.5225 | 0.022* | |
O7 | 0.04211 (12) | 0.58284 (9) | 0.8508 (2) | 0.0333 (4) | |
H7A | 0.033 (2) | 0.5862 (15) | 0.718 (4) | 0.050* | |
H7B | 0.076 (2) | 0.5390 (18) | 0.876 (4) | 0.050* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0144 (7) | 0.0182 (6) | 0.0251 (7) | 0.0000 (4) | −0.0024 (5) | −0.0017 (4) |
O2 | 0.0203 (7) | 0.0157 (5) | 0.0204 (6) | −0.0030 (4) | 0.0031 (5) | −0.0024 (4) |
O3 | 0.0178 (7) | 0.0122 (5) | 0.0247 (7) | 0.0012 (4) | −0.0012 (5) | 0.0003 (4) |
O4 | 0.0142 (6) | 0.0122 (5) | 0.0233 (6) | 0.0001 (4) | 0.0001 (5) | 0.0003 (4) |
O5 | 0.0170 (6) | 0.0151 (5) | 0.0228 (6) | 0.0026 (4) | 0.0018 (5) | 0.0022 (4) |
O6 | 0.0142 (7) | 0.0193 (6) | 0.0287 (7) | 0.0001 (5) | −0.0033 (5) | −0.0036 (4) |
C1 | 0.0118 (8) | 0.0211 (8) | 0.0142 (8) | 0.0007 (6) | 0.0023 (7) | −0.0008 (5) |
C2 | 0.0150 (9) | 0.0167 (7) | 0.0167 (8) | 0.0031 (6) | 0.0039 (7) | 0.0011 (5) |
C3 | 0.0144 (8) | 0.0137 (7) | 0.0156 (8) | −0.0020 (6) | 0.0060 (7) | −0.0013 (5) |
C4 | 0.0135 (8) | 0.0167 (7) | 0.0169 (8) | −0.0019 (6) | 0.0038 (7) | −0.0018 (5) |
C5 | 0.0129 (8) | 0.0162 (7) | 0.0144 (8) | 0.0003 (6) | 0.0054 (7) | −0.0015 (5) |
C6 | 0.0142 (9) | 0.0158 (7) | 0.0135 (8) | 0.0009 (6) | 0.0052 (7) | 0.0000 (5) |
C7 | 0.0118 (8) | 0.0161 (7) | 0.0149 (8) | 0.0013 (6) | 0.0043 (7) | 0.0006 (5) |
C8 | 0.0165 (9) | 0.0141 (7) | 0.0146 (8) | 0.0008 (6) | 0.0053 (7) | 0.0006 (5) |
C9 | 0.0182 (9) | 0.0141 (7) | 0.0149 (8) | −0.0021 (6) | 0.0054 (7) | −0.0012 (5) |
C10 | 0.0250 (10) | 0.0205 (8) | 0.0285 (10) | −0.0043 (7) | 0.0090 (8) | 0.0021 (6) |
C11 | 0.0152 (9) | 0.0140 (7) | 0.0159 (8) | −0.0019 (6) | 0.0023 (7) | 0.0016 (5) |
C12 | 0.0162 (9) | 0.0136 (7) | 0.0181 (8) | 0.0019 (6) | 0.0056 (7) | 0.0015 (5) |
C13 | 0.0199 (10) | 0.0125 (7) | 0.0186 (8) | −0.0029 (6) | 0.0033 (7) | −0.0018 (5) |
C14 | 0.0132 (8) | 0.0169 (7) | 0.0181 (8) | −0.0018 (6) | 0.0013 (7) | 0.0022 (5) |
C15 | 0.0153 (9) | 0.0183 (7) | 0.0253 (9) | 0.0030 (6) | 0.0045 (7) | −0.0031 (6) |
C16 | 0.0177 (9) | 0.0179 (7) | 0.0192 (9) | −0.0006 (6) | 0.0030 (7) | −0.0047 (5) |
O7 | 0.0329 (9) | 0.0253 (6) | 0.0358 (9) | 0.0005 (6) | −0.0037 (7) | −0.0060 (5) |
O1—C1 | 1.3602 (18) | C5—C11 | 1.483 (2) |
O1—H1 | 0.87 (2) | C6—C7 | 1.453 (2) |
O2—C9 | 1.3784 (16) | C7—C8 | 1.4171 (19) |
O2—C10 | 1.439 (2) | C8—C9 | 1.386 (2) |
O3—C8 | 1.3453 (17) | C10—H10A | 0.9800 |
O3—H3 | 0.90 (2) | C10—H10B | 0.9800 |
O4—C4 | 1.3568 (18) | C10—H10C | 0.9800 |
O4—C3 | 1.3717 (16) | C11—C16 | 1.384 (2) |
O5—C6 | 1.2434 (17) | C11—C12 | 1.400 (2) |
O6—C14 | 1.3823 (18) | C12—C13 | 1.387 (2) |
O6—H6 | 0.88 (2) | C12—H12 | 0.9500 |
C1—C2 | 1.381 (2) | C13—C14 | 1.376 (2) |
C1—C9 | 1.400 (2) | C13—H13 | 0.9500 |
C2—C3 | 1.382 (2) | C14—C15 | 1.390 (2) |
C2—H2 | 0.9500 | C15—C16 | 1.393 (2) |
C3—C7 | 1.3917 (19) | C15—H15 | 0.9500 |
C4—C5 | 1.345 (2) | C16—H16 | 0.9500 |
C4—H4 | 0.9500 | O7—H7A | 0.95 (3) |
C5—C6 | 1.458 (2) | O7—H7B | 0.77 (3) |
C1—O1—H1 | 113.5 (13) | O2—C9—C8 | 121.26 (13) |
C9—O2—C10 | 114.16 (13) | O2—C9—C1 | 118.99 (13) |
C8—O3—H3 | 100.2 (12) | C8—C9—C1 | 119.62 (13) |
C4—O4—C3 | 118.50 (11) | O2—C10—H10A | 109.5 |
C14—O6—H6 | 112.1 (13) | O2—C10—H10B | 109.5 |
O1—C1—C2 | 118.13 (13) | H10A—C10—H10B | 109.5 |
O1—C1—C9 | 120.40 (13) | O2—C10—H10C | 109.5 |
C2—C1—C9 | 121.47 (13) | H10A—C10—H10C | 109.5 |
C1—C2—C3 | 118.09 (13) | H10B—C10—H10C | 109.5 |
C1—C2—H2 | 121.0 | C16—C11—C12 | 118.55 (14) |
C3—C2—H2 | 121.0 | C16—C11—C5 | 120.86 (13) |
O4—C3—C2 | 116.81 (12) | C12—C11—C5 | 120.58 (15) |
O4—C3—C7 | 120.39 (13) | C13—C12—C11 | 120.59 (15) |
C2—C3—C7 | 122.80 (13) | C13—C12—H12 | 119.7 |
C5—C4—O4 | 125.74 (13) | C11—C12—H12 | 119.7 |
C5—C4—H4 | 117.1 | C14—C13—C12 | 119.88 (14) |
O4—C4—H4 | 117.1 | C14—C13—H13 | 120.1 |
C4—C5—C6 | 118.67 (14) | C12—C13—H13 | 120.1 |
C4—C5—C11 | 119.95 (13) | C13—C14—O6 | 117.93 (14) |
C6—C5—C11 | 121.36 (13) | C13—C14—C15 | 120.68 (14) |
O5—C6—C7 | 121.41 (13) | O6—C14—C15 | 121.39 (15) |
O5—C6—C5 | 123.52 (14) | C14—C15—C16 | 118.98 (16) |
C7—C6—C5 | 115.08 (12) | C14—C15—H15 | 120.5 |
C3—C7—C8 | 117.94 (13) | C16—C15—H15 | 120.5 |
C3—C7—C6 | 121.37 (13) | C11—C16—C15 | 121.29 (14) |
C8—C7—C6 | 120.69 (13) | C11—C16—H16 | 119.4 |
O3—C8—C9 | 119.11 (12) | C15—C16—H16 | 119.4 |
O3—C8—C7 | 120.86 (13) | H7A—O7—H7B | 102 (2) |
C9—C8—C7 | 120.03 (13) | ||
O1—C1—C2—C3 | 179.92 (17) | C10—O2—C9—C8 | 73.9 (2) |
C9—C1—C2—C3 | 0.2 (3) | C10—O2—C9—C1 | −110.33 (18) |
C4—O4—C3—C2 | −177.22 (16) | O3—C8—C9—O2 | −5.6 (3) |
C4—O4—C3—C7 | 2.1 (3) | C7—C8—C9—O2 | 173.72 (17) |
C1—C2—C3—O4 | 177.11 (17) | O3—C8—C9—C1 | 178.63 (17) |
C1—C2—C3—C7 | −2.2 (3) | C7—C8—C9—C1 | −2.1 (3) |
C3—O4—C4—C5 | −4.9 (3) | O1—C1—C9—O2 | 6.3 (3) |
O4—C4—C5—C6 | 2.7 (3) | C2—C1—C9—O2 | −173.97 (17) |
O4—C4—C5—C11 | −178.42 (17) | O1—C1—C9—C8 | −177.84 (17) |
C4—C5—C6—O5 | −177.81 (18) | C2—C1—C9—C8 | 1.9 (3) |
C11—C5—C6—O5 | 3.3 (3) | C4—C5—C11—C16 | −139.51 (19) |
C4—C5—C6—C7 | 2.0 (3) | C6—C5—C11—C16 | 39.4 (3) |
C11—C5—C6—C7 | −176.86 (16) | C4—C5—C11—C12 | 39.3 (3) |
O4—C3—C7—C8 | −177.26 (17) | C6—C5—C11—C12 | −141.85 (18) |
C2—C3—C7—C8 | 2.0 (3) | C16—C11—C12—C13 | −0.7 (3) |
O4—C3—C7—C6 | 2.6 (3) | C5—C11—C12—C13 | −179.49 (16) |
C2—C3—C7—C6 | −178.17 (18) | C11—C12—C13—C14 | −0.5 (3) |
O5—C6—C7—C3 | 175.31 (19) | C12—C13—C14—O6 | −177.31 (16) |
C5—C6—C7—C3 | −4.5 (3) | C12—C13—C14—C15 | 2.1 (3) |
O5—C6—C7—C8 | −4.8 (3) | C13—C14—C15—C16 | −2.4 (3) |
C5—C6—C7—C8 | 175.30 (17) | O6—C14—C15—C16 | 176.94 (16) |
C3—C7—C8—O3 | 179.49 (17) | C12—C11—C16—C15 | 0.3 (3) |
C6—C7—C8—O3 | −0.4 (3) | C5—C11—C16—C15 | 179.12 (17) |
C3—C7—C8—C9 | 0.2 (3) | C14—C15—C16—C11 | 1.2 (3) |
C6—C7—C8—C9 | −179.67 (17) |
D—H···A | D—H | H···A | D···A | D—H···A |
O7—H7B···O2i | 0.77 (3) | 2.57 (2) | 2.971 (2) | 114 (2) |
O7—H7A···O6ii | 0.95 (3) | 1.95 (3) | 2.884 (2) | 167 (2) |
O6—H6···O1iii | 0.88 (2) | 1.88 (2) | 2.7368 (17) | 167 (2) |
O3—H3···O5 | 0.90 (2) | 1.71 (2) | 2.5658 (16) | 159.6 (18) |
O1—H1···O7iv | 0.87 (2) | 1.83 (2) | 2.6630 (17) | 160.4 (19) |
Symmetry codes: (i) x, y, z+1; (ii) x−1, −y+3/2, z−1/2; (iii) x+1, y, z+1; (iv) x, y, z−1. |
Experimental details
Crystal data | |
Chemical formula | C16H12O6·H2O |
Mr | 318.27 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 113 |
a, b, c (Å) | 12.971 (3), 14.652 (3), 7.2930 (15) |
β (°) | 103.81 (3) |
V (Å3) | 1346.0 (5) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.13 |
Crystal size (mm) | 0.14 × 0.04 × 0.02 |
Data collection | |
Diffractometer | Rigaku Saturn CCD area-detector diffractometer |
Absorption correction | Multi-scan (CrystalClear; Rigaku/MSC, 2005) |
Tmin, Tmax | 0.973, 0.998 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 9180, 2967, 2069 |
Rint | 0.085 |
(sin θ/λ)max (Å−1) | 0.642 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.045, 0.117, 1.00 |
No. of reflections | 2967 |
No. of parameters | 224 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.33, −0.27 |
Computer programs: CrystalClear (Rigaku/MSC, 2005), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
O7—H7B···O2i | 0.77 (3) | 2.57 (2) | 2.971 (2) | 114 (2) |
O7—H7A···O6ii | 0.95 (3) | 1.95 (3) | 2.884 (2) | 167 (2) |
O6—H6···O1iii | 0.88 (2) | 1.88 (2) | 2.7368 (17) | 167 (2) |
O3—H3···O5 | 0.90 (2) | 1.71 (2) | 2.5658 (16) | 159.6 (18) |
O1—H1···O7iv | 0.87 (2) | 1.83 (2) | 2.6630 (17) | 160.4 (19) |
Symmetry codes: (i) x, y, z+1; (ii) x−1, −y+3/2, z−1/2; (iii) x+1, y, z+1; (iv) x, y, z−1. |
References
Gao, H., Li, G., Zhang, J. & Zeng, J. (2008). Acta Cryst. E64, o1538. Web of Science CSD CrossRef IUCr Journals Google Scholar
Oh, K. B., Kang, H. & Matsuoka, H. (2001). Biosci. Biotechnol. Biochem. 65, 939–942. Web of Science CrossRef PubMed CAS Google Scholar
Rigaku/MSC (2005). CrystalClear. Rigaku/MSC, The Woodlands, Texas, USA. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
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The title compound [systematic name: 5,7-dihydroxy-3-(4-hydroxyphenyl)-6-methoxy-4H-chromen-4-one] was isolated from Belamcanda chinensis and is said to have antimicrobiotic and anti-inflammatory effects. We report here the crystal structure of its monohydrate. The two aromatic ring systems rings are inclined at a dihedral angle of 36.79 (6)°. The molecules are linked by intermolecular O—H···O hydrogen bonds (Table 1).